Query 038802
Match_columns 532
No_of_seqs 998 out of 2552
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0310 Conserved WD40 repeat- 100.0 1.2E-76 2.6E-81 538.0 46.7 483 29-532 4-487 (487)
2 KOG0319 WD40-repeat-containing 100.0 5.6E-56 1.2E-60 421.6 33.9 433 45-527 317-769 (775)
3 KOG0291 WD40-repeat-containing 100.0 6.3E-50 1.4E-54 380.8 47.6 480 38-530 252-856 (893)
4 KOG0271 Notchless-like WD40 re 100.0 4.3E-50 9.4E-55 353.7 26.8 293 45-349 109-444 (480)
5 KOG0271 Notchless-like WD40 re 100.0 7.2E-50 1.6E-54 352.3 25.8 304 27-342 130-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 1E-48 2.2E-53 349.6 23.5 283 48-342 172-458 (459)
7 KOG0286 G-protein beta subunit 100.0 4.5E-44 9.8E-49 305.3 33.3 285 45-342 49-343 (343)
8 KOG0279 G protein beta subunit 100.0 1.7E-42 3.6E-47 294.0 32.6 286 45-344 9-313 (315)
9 KOG0306 WD40-repeat-containing 100.0 1.1E-41 2.3E-46 324.7 31.3 444 44-518 366-846 (888)
10 KOG0272 U4/U6 small nuclear ri 100.0 8E-43 1.7E-47 311.8 18.7 261 28-301 191-458 (459)
11 KOG0315 G-protein beta subunit 100.0 9.4E-41 2E-45 278.6 29.3 272 65-349 12-293 (311)
12 KOG0285 Pleiotropic regulator 100.0 2.9E-41 6.4E-46 295.5 27.2 288 46-347 146-442 (460)
13 KOG0284 Polyadenylation factor 100.0 1.4E-42 3E-47 308.9 18.1 287 48-347 93-383 (464)
14 KOG0295 WD40 repeat-containing 100.0 3.8E-41 8.3E-46 295.7 26.5 286 45-343 102-405 (406)
15 KOG0273 Beta-transducin family 100.0 2.7E-40 5.8E-45 299.5 28.6 297 48-350 175-488 (524)
16 KOG0273 Beta-transducin family 100.0 9.5E-40 2.1E-44 295.9 30.7 304 26-344 193-523 (524)
17 KOG0319 WD40-repeat-containing 100.0 3.9E-39 8.5E-44 307.1 32.9 319 33-363 83-599 (775)
18 KOG0265 U5 snRNP-specific prot 100.0 5.3E-39 1.2E-43 275.4 28.5 285 46-342 42-336 (338)
19 KOG0263 Transcription initiati 100.0 2.2E-39 4.9E-44 312.0 27.4 244 48-304 375-650 (707)
20 KOG0286 G-protein beta subunit 100.0 1.1E-38 2.3E-43 272.5 27.3 263 27-301 70-343 (343)
21 KOG0276 Vesicle coat complex C 100.0 9.4E-39 2E-43 298.7 27.5 283 46-340 8-295 (794)
22 KOG0315 G-protein beta subunit 100.0 4.5E-38 9.8E-43 262.6 28.6 287 24-323 10-309 (311)
23 cd00200 WD40 WD40 domain, foun 100.0 4.6E-37 1E-41 289.9 37.9 285 45-342 3-289 (289)
24 KOG0318 WD40 repeat stress pro 100.0 3.1E-37 6.7E-42 283.2 33.9 293 46-349 142-565 (603)
25 KOG0279 G protein beta subunit 100.0 8E-38 1.7E-42 265.6 26.9 264 27-303 31-313 (315)
26 KOG0645 WD40 repeat protein [G 100.0 1.1E-36 2.3E-41 257.7 32.2 284 43-344 6-311 (312)
27 KOG0266 WD40 repeat-containing 100.0 2.2E-37 4.7E-42 307.1 32.5 296 35-344 144-454 (456)
28 KOG0316 Conserved WD40 repeat- 100.0 2.7E-37 5.8E-42 255.9 26.5 280 45-342 11-297 (307)
29 KOG0282 mRNA splicing factor [ 100.0 1.1E-38 2.4E-43 290.1 18.3 291 41-342 204-503 (503)
30 KOG0296 Angio-associated migra 100.0 8.4E-37 1.8E-41 268.6 27.8 296 44-349 57-361 (399)
31 KOG0263 Transcription initiati 100.0 1.2E-37 2.6E-42 300.1 24.2 249 88-349 373-654 (707)
32 KOG0318 WD40 repeat stress pro 100.0 7.1E-36 1.5E-40 274.4 33.9 304 29-344 165-602 (603)
33 PLN00181 protein SPA1-RELATED; 100.0 1.6E-35 3.5E-40 315.7 41.4 298 34-343 458-792 (793)
34 KOG0291 WD40-repeat-containing 100.0 1.1E-35 2.3E-40 284.0 33.0 285 48-345 304-613 (893)
35 KOG1539 WD repeat protein [Gen 100.0 4.5E-34 9.8E-39 276.0 41.9 486 30-527 178-907 (910)
36 KOG0278 Serine/threonine kinas 100.0 4.1E-37 8.9E-42 257.0 18.1 289 45-349 8-302 (334)
37 KOG0293 WD40 repeat-containing 100.0 2.7E-36 5.9E-41 269.1 24.1 288 45-346 218-515 (519)
38 KOG0281 Beta-TrCP (transducin 100.0 1.4E-37 3.1E-42 271.4 15.0 273 49-348 195-481 (499)
39 KOG0285 Pleiotropic regulator 100.0 4.4E-36 9.5E-41 263.1 21.8 251 84-349 142-394 (460)
40 KOG0292 Vesicle coat complex C 100.0 1.3E-35 2.8E-40 287.8 26.8 285 49-345 7-322 (1202)
41 KOG0284 Polyadenylation factor 100.0 6.6E-37 1.4E-41 272.8 14.8 261 29-302 113-379 (464)
42 KOG0277 Peroxisomal targeting 100.0 2E-35 4.2E-40 247.7 22.5 280 55-343 12-308 (311)
43 KOG0296 Angio-associated migra 100.0 1.2E-34 2.7E-39 255.0 28.5 302 29-344 81-398 (399)
44 KOG0275 Conserved WD40 repeat- 100.0 4.9E-36 1.1E-40 259.5 17.0 282 48-342 210-507 (508)
45 KOG0265 U5 snRNP-specific prot 100.0 1.1E-34 2.3E-39 249.1 24.1 251 86-349 40-301 (338)
46 KOG0295 WD40 repeat-containing 100.0 3.7E-35 8.1E-40 258.1 21.6 260 31-302 127-405 (406)
47 KOG0276 Vesicle coat complex C 100.0 5.6E-35 1.2E-39 273.5 21.9 267 87-363 7-279 (794)
48 KOG0643 Translation initiation 100.0 1.3E-33 2.8E-38 238.4 27.6 288 44-345 3-318 (327)
49 KOG0313 Microtubule binding pr 100.0 6.8E-34 1.5E-38 251.5 26.5 280 48-344 102-418 (423)
50 KOG0268 Sof1-like rRNA process 100.0 1.9E-34 4.1E-39 253.4 18.4 287 45-349 60-350 (433)
51 KOG0306 WD40-repeat-containing 100.0 5.9E-32 1.3E-36 258.5 35.0 316 32-361 85-642 (888)
52 KOG0281 Beta-TrCP (transducin 100.0 1.4E-34 3E-39 252.7 14.9 258 27-308 210-482 (499)
53 KOG0973 Histone transcription 100.0 5.5E-33 1.2E-37 277.1 28.2 299 46-347 8-358 (942)
54 KOG0266 WD40 repeat-containing 100.0 9.9E-33 2.1E-37 273.8 29.4 262 30-303 177-454 (456)
55 KOG0645 WD40 repeat protein [G 100.0 3.1E-32 6.7E-37 230.7 27.3 261 26-303 29-311 (312)
56 KOG0274 Cdc4 and related F-box 100.0 2.4E-32 5.1E-37 269.7 29.9 277 50-349 207-487 (537)
57 KOG0316 Conserved WD40 repeat- 100.0 1.2E-32 2.6E-37 228.4 22.8 249 85-349 9-262 (307)
58 KOG0288 WD40 repeat protein Ti 100.0 8.7E-34 1.9E-38 253.3 17.2 280 46-342 170-459 (459)
59 KOG0283 WD40 repeat-containing 100.0 5.5E-33 1.2E-37 270.3 23.8 249 85-347 258-579 (712)
60 KOG1446 Histone H3 (Lys4) meth 100.0 5.4E-31 1.2E-35 228.7 33.5 281 48-344 11-303 (311)
61 KOG0277 Peroxisomal targeting 100.0 6.4E-33 1.4E-37 232.6 18.9 245 50-302 59-308 (311)
62 KOG1407 WD40 repeat protein [F 100.0 1.9E-31 4.1E-36 224.7 27.0 276 45-335 14-293 (313)
63 KOG0772 Uncharacterized conser 100.0 2.8E-32 6.1E-37 250.0 23.7 292 45-346 161-489 (641)
64 KOG0292 Vesicle coat complex C 100.0 2.4E-31 5.3E-36 258.3 30.1 302 32-346 29-399 (1202)
65 PTZ00421 coronin; Provisional 100.0 1.6E-30 3.4E-35 256.7 35.8 265 50-325 19-314 (493)
66 KOG0640 mRNA cleavage stimulat 100.0 9E-32 2E-36 231.9 22.9 288 45-344 106-426 (430)
67 KOG0305 Anaphase promoting com 100.0 2.6E-31 5.7E-36 252.3 28.2 275 55-346 181-463 (484)
68 KOG0641 WD40 repeat protein [G 100.0 4.6E-30 1E-34 211.8 31.8 290 43-344 24-349 (350)
69 KOG0299 U3 snoRNP-associated p 100.0 1.8E-31 3.9E-36 241.9 25.6 272 47-333 138-444 (479)
70 PLN00181 protein SPA1-RELATED; 100.0 1.3E-30 2.7E-35 278.3 36.5 262 72-346 457-740 (793)
71 cd00200 WD40 WD40 domain, foun 100.0 1.9E-30 4E-35 244.7 31.3 258 31-301 28-289 (289)
72 KOG0283 WD40 repeat-containing 100.0 3.4E-31 7.3E-36 257.9 25.7 248 44-305 259-578 (712)
73 KOG0282 mRNA splicing factor [ 100.0 5E-32 1.1E-36 247.0 16.3 263 26-301 229-503 (503)
74 KOG0647 mRNA export protein (c 100.0 1.9E-30 4.1E-35 223.2 24.5 269 50-333 26-312 (347)
75 KOG0300 WD40 repeat-containing 100.0 1.8E-30 3.8E-35 224.6 22.7 289 45-346 142-478 (481)
76 KOG0294 WD40 repeat-containing 100.0 7.1E-30 1.5E-34 220.9 26.4 266 66-349 4-286 (362)
77 PTZ00420 coronin; Provisional 100.0 6E-29 1.3E-33 246.4 35.4 246 69-326 50-318 (568)
78 KOG0289 mRNA splicing factor [ 100.0 8.2E-30 1.8E-34 229.3 26.3 279 52-343 220-505 (506)
79 KOG0313 Microtubule binding pr 100.0 4.3E-30 9.3E-35 227.5 23.2 262 28-303 119-418 (423)
80 KOG1446 Histone H3 (Lys4) meth 100.0 8.5E-29 1.9E-33 215.0 30.7 254 84-351 5-269 (311)
81 KOG0305 Anaphase promoting com 100.0 5E-30 1.1E-34 243.7 24.6 257 34-305 197-463 (484)
82 KOG0294 WD40 repeat-containing 100.0 2.4E-29 5.2E-34 217.6 26.1 261 44-321 36-304 (362)
83 PTZ00421 coronin; Provisional 100.0 1E-28 2.2E-33 244.0 34.0 228 45-275 69-314 (493)
84 KOG0274 Cdc4 and related F-box 100.0 1.5E-29 3.3E-34 249.9 28.0 260 30-311 224-490 (537)
85 KOG0301 Phospholipase A2-activ 100.0 1.6E-29 3.5E-34 240.0 26.2 278 45-346 8-290 (745)
86 KOG0264 Nucleosome remodeling 100.0 1.5E-29 3.3E-34 229.6 22.3 251 46-304 119-405 (422)
87 KOG0643 Translation initiation 100.0 1.1E-28 2.4E-33 208.7 25.7 240 88-340 5-257 (327)
88 KOG1407 WD40 repeat protein [F 100.0 3.9E-29 8.4E-34 210.8 21.8 249 87-349 14-266 (313)
89 KOG1036 Mitotic spindle checkp 100.0 1.8E-28 3.9E-33 211.9 26.5 267 51-334 13-294 (323)
90 PF09384 UTP15_C: UTP15 C term 100.0 4.3E-30 9.2E-35 210.0 15.5 147 379-525 1-148 (148)
91 KOG0310 Conserved WD40 repeat- 100.0 2.9E-29 6.4E-34 229.3 22.5 242 46-301 63-307 (487)
92 KOG0293 WD40 repeat-containing 100.0 1.8E-29 4E-34 225.6 20.1 264 27-304 239-514 (519)
93 KOG0264 Nucleosome remodeling 100.0 4.6E-29 9.9E-34 226.5 22.9 248 90-345 121-405 (422)
94 PTZ00420 coronin; Provisional 100.0 7.4E-28 1.6E-32 238.6 33.4 224 111-347 50-296 (568)
95 KOG0278 Serine/threonine kinas 100.0 4.6E-30 9.9E-35 214.9 14.6 247 45-307 53-301 (334)
96 KOG0308 Conserved WD40 repeat- 100.0 9.3E-30 2E-34 239.9 18.4 286 49-346 19-329 (735)
97 KOG0275 Conserved WD40 repeat- 100.0 5.9E-30 1.3E-34 221.9 14.5 262 28-301 229-507 (508)
98 KOG0289 mRNA splicing factor [ 100.0 2.4E-28 5.3E-33 219.9 24.0 241 94-346 220-464 (506)
99 KOG0639 Transducin-like enhanc 100.0 1.1E-28 2.5E-33 225.7 20.3 280 48-343 416-703 (705)
100 KOG0288 WD40 repeat protein Ti 100.0 8.5E-29 1.8E-33 221.5 17.6 256 29-300 192-458 (459)
101 KOG1332 Vesicle coat complex C 100.0 2.2E-28 4.7E-33 204.4 18.4 252 90-346 8-288 (299)
102 KOG2055 WD40 repeat protein [G 100.0 4.7E-27 1E-31 213.3 26.2 284 49-344 211-512 (514)
103 KOG0269 WD40 repeat-containing 100.0 7.5E-28 1.6E-32 231.4 21.8 286 51-346 39-342 (839)
104 KOG2096 WD40 repeat protein [G 100.0 1E-26 2.2E-31 201.5 26.6 289 44-346 79-404 (420)
105 KOG0300 WD40 repeat-containing 100.0 5.8E-28 1.3E-32 209.1 18.9 251 84-347 139-431 (481)
106 KOG0269 WD40 repeat-containing 100.0 2.8E-28 6.1E-33 234.3 15.3 241 53-302 89-339 (839)
107 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.7E-32 225.6 19.2 310 28-350 41-399 (735)
108 KOG0647 mRNA export protein (c 100.0 1.4E-26 3E-31 199.5 23.2 243 91-349 25-286 (347)
109 KOG1408 WD40 repeat protein [F 100.0 5.9E-27 1.3E-31 223.0 22.8 304 32-346 344-715 (1080)
110 KOG0772 Uncharacterized conser 100.0 5.4E-27 1.2E-31 215.6 21.1 256 84-349 158-450 (641)
111 KOG4283 Transcription-coupled 100.0 2.3E-26 5E-31 197.3 23.6 287 48-344 40-365 (397)
112 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.9E-25 1.1E-29 209.9 35.6 270 64-349 2-284 (300)
113 KOG0641 WD40 repeat protein [G 100.0 1.6E-25 3.4E-30 185.1 27.1 244 47-303 85-349 (350)
114 KOG0267 Microtubule severing p 100.0 1.8E-28 3.8E-33 233.9 11.0 256 62-336 3-260 (825)
115 KOG4328 WD40 protein [Function 100.0 2.7E-26 5.9E-31 208.2 23.7 296 39-345 174-496 (498)
116 KOG0973 Histone transcription 100.0 2E-26 4.4E-31 230.4 24.5 245 47-304 65-356 (942)
117 KOG1274 WD40 repeat protein [G 100.0 9.4E-26 2E-30 221.2 28.4 277 48-341 10-297 (933)
118 KOG0270 WD40 repeat-containing 100.0 3E-26 6.5E-31 207.3 23.0 283 55-349 129-454 (463)
119 KOG0299 U3 snoRNP-associated p 100.0 3E-26 6.6E-31 208.1 23.1 239 49-300 200-453 (479)
120 KOG0268 Sof1-like rRNA process 100.0 2.4E-27 5.3E-32 208.8 15.3 263 25-305 80-347 (433)
121 KOG1036 Mitotic spindle checkp 99.9 9.6E-26 2.1E-30 195.1 24.3 240 92-349 12-267 (323)
122 KOG0301 Phospholipase A2-activ 99.9 4.4E-26 9.4E-31 216.9 23.5 251 29-303 30-288 (745)
123 KOG0646 WD40 repeat protein [G 99.9 2.7E-26 5.9E-31 208.9 20.6 253 64-328 51-333 (476)
124 KOG0640 mRNA cleavage stimulat 99.9 1.3E-26 2.9E-31 200.1 16.9 246 46-302 167-425 (430)
125 KOG2106 Uncharacterized conser 99.9 3.3E-24 7.1E-29 196.9 33.1 290 31-341 177-518 (626)
126 KOG1539 WD repeat protein [Gen 99.9 2.8E-24 6.1E-29 208.6 32.7 284 54-349 162-611 (910)
127 KOG1034 Transcriptional repres 99.9 7E-25 1.5E-29 191.1 23.5 292 43-344 30-383 (385)
128 KOG1273 WD40 repeat protein [G 99.9 2E-24 4.3E-29 187.2 26.0 283 54-348 26-326 (405)
129 KOG0646 WD40 repeat protein [G 99.9 2.4E-25 5.3E-30 202.7 21.3 241 32-275 59-330 (476)
130 KOG2106 Uncharacterized conser 99.9 1.3E-23 2.8E-28 193.0 31.6 300 30-348 130-481 (626)
131 KOG1274 WD40 repeat protein [G 99.9 1.7E-24 3.7E-29 212.4 26.5 242 90-346 10-264 (933)
132 KOG2048 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 199.7 31.4 280 50-345 24-320 (691)
133 KOG1332 Vesicle coat complex C 99.9 2.5E-25 5.5E-30 186.1 17.4 247 48-303 8-286 (299)
134 KOG2445 Nuclear pore complex c 99.9 8.9E-24 1.9E-28 182.7 26.0 250 90-345 10-319 (361)
135 KOG0650 WD40 repeat nucleolar 99.9 2.5E-24 5.5E-29 201.5 24.5 285 43-342 392-733 (733)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.8E-23 2.1E-27 194.1 34.1 276 32-324 9-300 (300)
137 KOG0267 Microtubule severing p 99.9 3.8E-26 8.3E-31 218.1 9.8 234 36-276 16-250 (825)
138 KOG1063 RNA polymerase II elon 99.9 8.2E-24 1.8E-28 201.4 25.4 287 48-346 264-650 (764)
139 KOG2445 Nuclear pore complex c 99.9 3.3E-23 7.3E-28 179.2 26.5 268 47-324 9-342 (361)
140 KOG0307 Vesicle coat complex C 99.9 8.4E-25 1.8E-29 219.9 17.9 285 55-348 10-331 (1049)
141 KOG4378 Nuclear protein COP1 [ 99.9 3.1E-24 6.7E-29 196.6 19.6 269 66-347 5-283 (673)
142 KOG0321 WD40 repeat-containing 99.9 8.2E-24 1.8E-28 199.6 22.8 283 56-348 54-395 (720)
143 KOG0270 WD40 repeat-containing 99.9 2.6E-24 5.6E-29 194.8 18.6 238 63-308 192-454 (463)
144 KOG0302 Ribosome Assembly prot 99.9 1.7E-23 3.7E-28 185.6 22.5 239 47-296 147-432 (440)
145 KOG0302 Ribosome Assembly prot 99.9 1.2E-23 2.5E-28 186.7 21.4 243 91-342 149-436 (440)
146 KOG0639 Transducin-like enhanc 99.9 2.1E-24 4.6E-29 197.9 16.9 254 33-302 439-703 (705)
147 KOG1009 Chromatin assembly com 99.9 3.6E-23 7.7E-28 185.5 23.6 297 50-348 12-376 (434)
148 KOG2919 Guanine nucleotide-bin 99.9 6.2E-23 1.3E-27 178.6 23.5 272 54-335 52-361 (406)
149 KOG1408 WD40 repeat protein [F 99.9 9.5E-24 2.1E-28 201.3 19.3 243 50-304 458-714 (1080)
150 KOG1538 Uncharacterized conser 99.9 2.9E-23 6.3E-28 196.6 22.3 272 53-345 14-294 (1081)
151 KOG4328 WD40 protein [Function 99.9 3.1E-23 6.7E-28 188.5 21.1 262 78-349 171-455 (498)
152 KOG4378 Nuclear protein COP1 [ 99.9 6E-24 1.3E-28 194.7 16.3 243 31-275 54-304 (673)
153 KOG4283 Transcription-coupled 99.9 1.6E-23 3.5E-28 179.9 17.1 207 132-349 40-281 (397)
154 KOG2048 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 186.6 29.5 243 93-348 25-279 (691)
155 KOG1063 RNA polymerase II elon 99.9 3.9E-22 8.4E-27 190.1 26.3 306 30-347 285-702 (764)
156 KOG1273 WD40 repeat protein [G 99.9 1E-22 2.3E-27 176.6 20.0 241 96-349 26-285 (405)
157 KOG0307 Vesicle coat complex C 99.9 9.3E-23 2E-27 205.3 22.1 248 50-306 63-330 (1049)
158 KOG0321 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 190.5 22.6 263 31-304 71-392 (720)
159 KOG2096 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 172.3 22.8 248 88-349 81-365 (420)
160 KOG1188 WD40 repeat protein [G 99.9 4.6E-22 1E-26 174.6 20.0 270 64-343 41-345 (376)
161 KOG1445 Tumor-specific antigen 99.9 1.2E-21 2.5E-26 184.8 21.4 121 45-166 73-200 (1012)
162 KOG0290 Conserved WD40 repeat- 99.9 5.7E-21 1.2E-25 164.1 22.9 277 53-340 46-361 (364)
163 KOG1007 WD repeat protein TSSC 99.9 4.6E-21 9.9E-26 164.5 22.0 270 65-345 28-362 (370)
164 KOG1587 Cytoplasmic dynein int 99.9 7.3E-21 1.6E-25 186.8 25.7 265 73-346 222-518 (555)
165 KOG0649 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 156.0 24.5 270 52-342 11-314 (325)
166 COG2319 FOG: WD40 repeat [Gene 99.9 4.6E-19 9.9E-24 177.3 37.8 290 46-347 60-362 (466)
167 KOG4227 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 168.6 22.6 295 40-345 45-388 (609)
168 KOG0644 Uncharacterized conser 99.9 3.3E-22 7.1E-27 194.1 13.3 282 45-349 184-473 (1113)
169 KOG0650 WD40 repeat nucleolar 99.9 1.1E-20 2.4E-25 177.3 21.2 247 85-344 392-680 (733)
170 KOG2055 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 171.2 20.7 278 9-303 214-512 (514)
171 KOG1007 WD repeat protein TSSC 99.9 2.9E-20 6.2E-25 159.6 20.1 250 44-303 56-361 (370)
172 COG2319 FOG: WD40 repeat [Gene 99.9 2.5E-18 5.5E-23 171.9 37.4 303 32-349 85-405 (466)
173 KOG0303 Actin-binding protein 99.9 7E-20 1.5E-24 163.8 21.3 226 88-325 76-320 (472)
174 KOG2919 Guanine nucleotide-bin 99.9 6.2E-20 1.3E-24 160.1 20.2 233 51-294 104-361 (406)
175 KOG0642 Cell-cycle nuclear pro 99.9 6.3E-21 1.4E-25 178.1 15.0 254 46-311 289-569 (577)
176 KOG0303 Actin-binding protein 99.9 1.5E-19 3.2E-24 161.8 22.4 206 129-347 75-297 (472)
177 KOG1963 WD40 repeat protein [G 99.9 9.8E-19 2.1E-23 172.0 29.6 287 48-346 202-540 (792)
178 KOG1034 Transcriptional repres 99.8 3.8E-20 8.3E-25 161.7 16.7 242 48-302 86-382 (385)
179 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-20 3.6E-25 175.4 15.3 251 86-349 287-566 (577)
180 KOG1517 Guanine nucleotide bin 99.8 2.5E-19 5.4E-24 178.6 24.3 283 53-347 1066-1384(1387)
181 KOG1524 WD40 repeat-containing 99.8 6.7E-20 1.4E-24 170.0 18.7 263 49-341 12-283 (737)
182 KOG0322 G-protein beta subunit 99.8 5.3E-20 1.2E-24 156.1 13.8 242 47-302 10-322 (323)
183 KOG1445 Tumor-specific antigen 99.8 9.2E-19 2E-23 165.5 23.2 157 180-346 629-800 (1012)
184 KOG1009 Chromatin assembly com 99.8 5.7E-19 1.2E-23 158.7 19.9 271 27-308 29-377 (434)
185 KOG0322 G-protein beta subunit 99.8 3.6E-19 7.9E-24 151.1 15.7 247 85-343 6-322 (323)
186 KOG4547 WD40 repeat-containing 99.8 2.2E-17 4.8E-22 156.0 29.2 188 60-252 2-221 (541)
187 KOG2110 Uncharacterized conser 99.8 2E-17 4.4E-22 147.3 27.0 236 93-347 5-251 (391)
188 KOG1538 Uncharacterized conser 99.8 9.1E-19 2E-23 166.5 19.5 239 95-346 14-254 (1081)
189 PRK11028 6-phosphogluconolacto 99.8 7.5E-17 1.6E-21 155.2 33.0 265 68-346 7-306 (330)
190 KOG0290 Conserved WD40 repeat- 99.8 1.7E-18 3.8E-23 149.0 18.1 236 48-293 93-356 (364)
191 KOG1240 Protein kinase contain 99.8 1.5E-17 3.2E-22 168.6 25.8 301 39-342 1034-1431(1431)
192 KOG1334 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 162.2 14.1 295 46-348 137-470 (559)
193 KOG0649 WD40 repeat protein [G 99.8 3.9E-17 8.5E-22 137.2 23.7 234 95-349 12-279 (325)
194 KOG1272 WD40-repeat-containing 99.8 1.7E-19 3.7E-24 164.6 10.4 270 53-342 131-407 (545)
195 KOG0771 Prolactin regulatory e 99.8 1.4E-17 3.1E-22 150.9 22.6 199 139-349 148-359 (398)
196 KOG1587 Cytoplasmic dynein int 99.8 1.7E-17 3.6E-22 163.3 23.3 260 35-304 223-517 (555)
197 KOG2110 Uncharacterized conser 99.8 9.9E-16 2.1E-20 136.6 31.9 276 51-346 5-332 (391)
198 KOG1523 Actin-related protein 99.8 2.1E-17 4.5E-22 144.4 19.9 224 50-275 9-260 (361)
199 KOG1188 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 148.3 16.8 193 149-349 41-247 (376)
200 KOG1524 WD40 repeat-containing 99.8 4.6E-18 9.9E-23 157.9 16.1 207 64-299 76-282 (737)
201 KOG1310 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 160.2 14.0 216 44-259 43-311 (758)
202 KOG4227 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 145.2 20.9 250 87-348 50-326 (609)
203 KOG0644 Uncharacterized conser 99.8 5.1E-19 1.1E-23 172.2 8.1 244 84-348 181-430 (1113)
204 KOG2139 WD40 repeat protein [G 99.8 4.7E-16 1E-20 138.1 25.8 280 51-345 98-432 (445)
205 KOG2321 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 151.7 20.7 288 45-345 45-344 (703)
206 PF02239 Cytochrom_D1: Cytochr 99.8 2.9E-15 6.3E-20 143.7 32.3 281 65-349 7-352 (369)
207 KOG1517 Guanine nucleotide bin 99.8 1E-16 2.2E-21 160.2 21.6 261 33-305 1085-1383(1387)
208 KOG1523 Actin-related protein 99.8 2.4E-16 5.1E-21 137.9 21.0 234 90-335 7-269 (361)
209 KOG4497 Uncharacterized conser 99.8 3.8E-16 8.2E-21 137.0 21.9 279 56-350 13-397 (447)
210 KOG1963 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 149.9 28.5 284 50-349 15-380 (792)
211 KOG0771 Prolactin regulatory e 99.7 2.8E-17 6E-22 149.1 14.9 195 97-303 148-354 (398)
212 PF08625 Utp13: Utp13 specific 99.7 2.4E-17 5.2E-22 132.4 12.5 129 400-528 1-139 (141)
213 PRK11028 6-phosphogluconolacto 99.7 4.2E-15 9.1E-20 143.1 29.9 275 33-322 11-327 (330)
214 PRK01742 tolB translocation pr 99.7 6E-16 1.3E-20 153.6 24.0 231 73-325 184-426 (429)
215 KOG2111 Uncharacterized conser 99.7 3.8E-15 8.3E-20 130.4 25.0 236 95-347 7-259 (346)
216 KOG1272 WD40-repeat-containing 99.7 1.6E-17 3.6E-22 151.8 9.3 235 93-346 129-364 (545)
217 KOG1310 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 148.2 15.3 239 85-349 42-308 (758)
218 KOG3881 Uncharacterized conser 99.7 1.7E-15 3.8E-20 136.0 20.9 264 49-325 53-342 (412)
219 PRK01742 tolB translocation pr 99.7 6.3E-16 1.4E-20 153.4 20.1 231 34-275 184-426 (429)
220 KOG2111 Uncharacterized conser 99.7 1.4E-13 3.1E-18 120.7 31.4 277 54-346 8-324 (346)
221 KOG1240 Protein kinase contain 99.7 4.8E-15 1E-19 150.8 25.5 263 78-349 1034-1339(1431)
222 KOG2315 Predicted translation 99.7 3.3E-14 7.1E-19 133.7 26.8 277 51-349 34-395 (566)
223 KOG4497 Uncharacterized conser 99.7 4.4E-14 9.5E-19 124.2 24.9 274 50-338 47-426 (447)
224 KOG2139 WD40 repeat protein [G 99.7 9.8E-15 2.1E-19 129.8 20.7 229 94-336 99-367 (445)
225 KOG2394 WD40 protein DMR-N9 [G 99.7 6.8E-15 1.5E-19 137.3 20.0 251 55-309 127-458 (636)
226 KOG1354 Serine/threonine prote 99.6 3.6E-14 7.8E-19 125.5 18.9 245 49-304 23-360 (433)
227 PRK04922 tolB translocation pr 99.6 1.4E-13 3.1E-18 137.0 23.4 230 35-274 185-432 (433)
228 PRK03629 tolB translocation pr 99.6 2.4E-13 5.2E-18 134.7 24.8 231 35-275 180-428 (429)
229 KOG1409 Uncharacterized conser 99.6 1.1E-13 2.4E-18 122.5 19.5 246 45-304 18-271 (404)
230 PRK03629 tolB translocation pr 99.6 7.7E-13 1.7E-17 131.1 27.9 232 74-324 180-427 (429)
231 PRK04922 tolB translocation pr 99.6 3.6E-13 7.7E-18 134.1 24.8 232 73-324 184-432 (433)
232 PRK02889 tolB translocation pr 99.6 1.8E-13 4E-18 135.7 21.9 221 45-275 189-425 (427)
233 PRK02889 tolB translocation pr 99.6 5.8E-13 1.2E-17 132.1 24.9 233 73-325 176-425 (427)
234 PRK05137 tolB translocation pr 99.6 1.5E-12 3.3E-17 129.8 27.8 231 74-324 183-432 (435)
235 KOG3881 Uncharacterized conser 99.6 2.7E-13 5.9E-18 122.1 19.9 242 93-349 55-325 (412)
236 KOG2394 WD40 protein DMR-N9 [G 99.6 3.5E-14 7.6E-19 132.6 14.7 137 51-188 219-384 (636)
237 KOG1334 WD40 repeat protein [G 99.6 4.1E-14 8.8E-19 130.7 14.7 257 84-349 133-429 (559)
238 PF08662 eIF2A: Eukaryotic tra 99.6 3.5E-13 7.7E-18 117.5 19.7 151 183-348 10-183 (194)
239 KOG2314 Translation initiation 99.6 1.2E-12 2.7E-17 122.9 24.1 281 52-348 250-577 (698)
240 KOG0280 Uncharacterized conser 99.6 1.9E-12 4.1E-17 112.5 23.0 265 72-346 45-335 (339)
241 KOG0280 Uncharacterized conser 99.6 5.7E-13 1.2E-17 115.6 19.9 240 52-301 70-331 (339)
242 PF10282 Lactonase: Lactonase, 99.6 1E-10 2.2E-15 112.7 37.8 271 66-346 2-324 (345)
243 PF02239 Cytochrom_D1: Cytochr 99.6 9.2E-12 2E-16 119.7 29.6 245 55-312 40-356 (369)
244 TIGR02658 TTQ_MADH_Hv methylam 99.5 5.2E-11 1.1E-15 111.7 32.8 261 73-349 27-335 (352)
245 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.8E-17 113.1 20.5 148 55-209 9-179 (194)
246 PRK05137 tolB translocation pr 99.5 5.3E-12 1.2E-16 125.9 26.2 215 115-347 182-415 (435)
247 KOG0974 WD-repeat protein WDR6 99.5 1.6E-12 3.4E-17 131.1 21.1 197 52-253 88-290 (967)
248 KOG0974 WD-repeat protein WDR6 99.5 1.4E-12 3.1E-17 131.3 18.9 273 50-348 6-292 (967)
249 KOG1409 Uncharacterized conser 99.5 5.1E-12 1.1E-16 112.1 19.0 221 27-252 39-271 (404)
250 KOG4547 WD40 repeat-containing 99.5 2.2E-11 4.7E-16 115.9 24.4 195 103-304 3-221 (541)
251 PRK00178 tolB translocation pr 99.5 1.6E-11 3.5E-16 122.7 25.1 222 44-275 191-428 (430)
252 TIGR02800 propeller_TolB tol-p 99.5 1.4E-11 2.9E-16 123.1 24.3 219 44-272 182-416 (417)
253 KOG2321 WD40 repeat protein [G 99.5 4E-12 8.7E-17 120.0 18.8 235 54-304 97-344 (703)
254 COG5354 Uncharacterized protei 99.5 9.2E-11 2E-15 109.6 26.3 280 50-348 70-399 (561)
255 TIGR02800 propeller_TolB tol-p 99.5 5.1E-11 1.1E-15 119.0 27.0 211 74-303 171-397 (417)
256 COG5354 Uncharacterized protei 99.4 1E-10 2.2E-15 109.3 25.9 281 50-348 31-352 (561)
257 KOG1354 Serine/threonine prote 99.4 1.1E-11 2.4E-16 110.0 18.0 246 93-350 25-365 (433)
258 PRK04792 tolB translocation pr 99.4 4E-11 8.8E-16 119.4 24.2 220 45-274 211-446 (448)
259 KOG1912 WD40 repeat protein [G 99.4 2.2E-11 4.8E-16 119.0 20.9 286 53-348 17-368 (1062)
260 PF10282 Lactonase: Lactonase, 99.4 3.6E-09 7.9E-14 102.0 36.2 261 51-322 36-345 (345)
261 KOG1064 RAVE (regulator of V-A 99.4 2.8E-12 6.2E-17 135.4 14.4 195 47-260 2204-2406(2439)
262 TIGR03300 assembly_YfgL outer 99.4 3.7E-10 8E-15 110.9 28.7 262 63-349 65-343 (377)
263 PRK04792 tolB translocation pr 99.4 1.3E-10 2.9E-15 115.7 25.7 232 74-324 199-446 (448)
264 PF04762 IKI3: IKI3 family; I 99.4 7.2E-10 1.6E-14 118.2 31.9 285 49-346 73-458 (928)
265 PRK00178 tolB translocation pr 99.4 3.6E-10 7.8E-15 113.0 28.2 231 74-324 180-427 (430)
266 PRK01029 tolB translocation pr 99.4 6.6E-10 1.4E-14 109.8 29.4 238 73-326 165-426 (428)
267 KOG0309 Conserved WD40 repeat- 99.4 8E-12 1.7E-16 121.2 14.2 287 50-346 23-341 (1081)
268 KOG1064 RAVE (regulator of V-A 99.4 5.2E-12 1.1E-16 133.5 13.3 200 90-314 2205-2409(2439)
269 TIGR03300 assembly_YfgL outer 99.4 1.4E-09 3E-14 106.9 29.5 257 62-341 104-376 (377)
270 KOG4190 Uncharacterized conser 99.3 5.6E-12 1.2E-16 118.4 11.1 279 45-340 729-1032(1034)
271 TIGR02658 TTQ_MADH_Hv methylam 99.3 9.7E-09 2.1E-13 96.6 32.6 239 59-312 53-339 (352)
272 PRK01029 tolB translocation pr 99.3 4.4E-10 9.5E-15 111.1 24.3 225 44-275 177-425 (428)
273 KOG2041 WD40 repeat protein [G 99.3 2.3E-10 5E-15 110.9 20.6 264 51-329 14-323 (1189)
274 KOG0309 Conserved WD40 repeat- 99.3 2.5E-11 5.5E-16 117.9 13.9 244 93-346 24-279 (1081)
275 COG2706 3-carboxymuconate cycl 99.3 1.7E-08 3.6E-13 91.3 30.7 265 72-347 15-324 (346)
276 KOG2315 Predicted translation 99.3 4.1E-09 9E-14 100.0 26.2 272 33-325 104-411 (566)
277 COG5170 CDC55 Serine/threonine 99.3 1.4E-10 3.1E-15 101.6 15.2 241 50-301 25-365 (460)
278 PLN02919 haloacid dehalogenase 99.3 8.7E-09 1.9E-13 112.2 32.2 240 97-348 571-892 (1057)
279 KOG4532 WD40-like repeat conta 99.3 1.8E-09 4E-14 92.9 21.0 233 104-345 83-332 (344)
280 COG2706 3-carboxymuconate cycl 99.3 6.9E-08 1.5E-12 87.4 32.0 280 33-323 15-345 (346)
281 PF04003 Utp12: Dip2/Utp12 Fam 99.2 6.4E-11 1.4E-15 93.3 10.0 102 426-528 4-109 (110)
282 KOG2314 Translation initiation 99.2 5.5E-08 1.2E-12 92.3 28.8 276 53-345 212-526 (698)
283 PLN02919 haloacid dehalogenase 99.2 4.5E-08 9.8E-13 106.7 32.5 239 55-307 571-892 (1057)
284 KOG1832 HIV-1 Vpr-binding prot 99.2 2.1E-11 4.5E-16 120.7 5.9 261 45-334 1095-1379(1516)
285 KOG1645 RING-finger-containing 99.2 2.1E-09 4.5E-14 97.8 17.5 258 75-344 175-461 (463)
286 COG4946 Uncharacterized protei 99.2 4.2E-08 9E-13 91.3 25.9 279 48-346 356-656 (668)
287 KOG2041 WD40 repeat protein [G 99.2 1.1E-09 2.5E-14 106.3 15.9 237 93-335 14-279 (1189)
288 KOG4190 Uncharacterized conser 99.2 2.1E-10 4.7E-15 108.0 10.6 244 86-345 728-989 (1034)
289 PF08450 SGL: SMP-30/Gluconola 99.2 5E-07 1.1E-11 82.9 33.0 217 98-333 4-244 (246)
290 PF15492 Nbas_N: Neuroblastoma 99.1 1.1E-07 2.5E-12 83.5 26.1 233 56-312 2-268 (282)
291 PRK04043 tolB translocation pr 99.1 3.8E-08 8.1E-13 96.7 25.9 191 53-253 189-402 (419)
292 PF04762 IKI3: IKI3 family; I 99.1 2.6E-07 5.7E-12 98.9 34.0 284 50-346 208-566 (928)
293 KOG2114 Vacuolar assembly/sort 99.1 8.5E-08 1.8E-12 95.8 27.6 208 58-269 30-261 (933)
294 PRK11138 outer membrane biogen 99.1 6.8E-08 1.5E-12 95.3 27.0 258 63-343 120-393 (394)
295 KOG3914 WD repeat protein WDR4 99.1 1.2E-09 2.7E-14 99.4 12.4 160 53-217 64-231 (390)
296 KOG4714 Nucleoporin [Nuclear s 99.1 2.3E-09 4.9E-14 92.0 13.2 234 96-342 39-316 (319)
297 KOG4532 WD40-like repeat conta 99.1 5.1E-08 1.1E-12 84.2 21.0 220 55-276 71-314 (344)
298 COG4946 Uncharacterized protei 99.1 1.2E-07 2.5E-12 88.4 24.5 215 102-333 275-507 (668)
299 PF15492 Nbas_N: Neuroblastoma 99.1 3.8E-07 8.3E-12 80.2 26.4 228 99-348 3-263 (282)
300 PRK11138 outer membrane biogen 99.1 1.2E-07 2.7E-12 93.5 26.7 265 63-349 69-358 (394)
301 KOG1912 WD40 repeat protein [G 99.1 3.1E-08 6.6E-13 97.5 21.4 240 95-346 17-306 (1062)
302 KOG4714 Nucleoporin [Nuclear s 99.0 2.6E-09 5.6E-14 91.6 11.5 162 49-210 87-255 (319)
303 PF13360 PQQ_2: PQQ-like domai 99.0 2.1E-07 4.5E-12 85.1 25.3 220 72-310 2-237 (238)
304 KOG2695 WD40 repeat protein [G 99.0 1E-09 2.2E-14 97.8 8.3 164 142-316 218-389 (425)
305 KOG1275 PAB-dependent poly(A) 99.0 1.3E-08 2.7E-13 102.0 16.0 181 104-301 146-340 (1118)
306 KOG3914 WD repeat protein WDR4 99.0 5.5E-09 1.2E-13 95.3 12.3 161 95-260 64-231 (390)
307 PF08450 SGL: SMP-30/Gluconola 99.0 2E-06 4.4E-11 78.9 29.7 207 56-273 4-233 (246)
308 COG5170 CDC55 Serine/threonine 99.0 1.1E-08 2.4E-13 90.0 13.1 237 93-348 26-313 (460)
309 PF13360 PQQ_2: PQQ-like domai 99.0 4.9E-07 1.1E-11 82.7 25.0 217 114-349 2-235 (238)
310 PF07433 DUF1513: Protein of u 99.0 1.8E-06 3.9E-11 78.5 26.9 216 53-275 6-268 (305)
311 KOG2066 Vacuolar assembly/sort 98.9 2.3E-07 5E-12 92.1 22.0 184 93-303 39-233 (846)
312 KOG1275 PAB-dependent poly(A) 98.9 2.9E-08 6.3E-13 99.5 15.9 181 64-250 148-341 (1118)
313 KOG0882 Cyclophilin-related pe 98.9 7.4E-08 1.6E-12 89.1 17.0 279 49-341 7-369 (558)
314 PF00930 DPPIV_N: Dipeptidyl p 98.9 2.3E-06 5E-11 82.9 27.6 260 60-334 1-347 (353)
315 KOG2066 Vacuolar assembly/sort 98.9 8E-08 1.7E-12 95.3 16.8 185 50-251 38-233 (846)
316 KOG1832 HIV-1 Vpr-binding prot 98.9 1.2E-09 2.7E-14 108.5 3.7 221 83-330 1091-1317(1516)
317 PRK04043 tolB translocation pr 98.9 3.3E-06 7.1E-11 83.2 27.6 211 115-346 169-402 (419)
318 KOG2114 Vacuolar assembly/sort 98.9 7.2E-07 1.6E-11 89.4 22.5 200 100-312 30-252 (933)
319 KOG3617 WD40 and TPR repeat-co 98.8 8.8E-08 1.9E-12 95.2 15.2 323 6-361 13-350 (1416)
320 KOG1920 IkappaB kinase complex 98.8 2.8E-06 6.1E-11 88.4 26.6 277 27-324 46-344 (1265)
321 KOG0882 Cyclophilin-related pe 98.8 5.4E-08 1.2E-12 90.0 11.7 205 133-349 7-236 (558)
322 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.5E-05 3.3E-10 69.1 25.3 262 62-345 62-352 (354)
323 cd00216 PQQ_DH Dehydrogenases 98.8 5.3E-06 1.1E-10 83.9 26.5 267 63-349 61-429 (488)
324 KOG2695 WD40 repeat protein [G 98.8 2.4E-08 5.2E-13 89.3 7.6 161 67-231 228-401 (425)
325 KOG4649 PQQ (pyrrolo-quinoline 98.7 3.2E-05 6.8E-10 67.2 25.9 143 63-210 23-166 (354)
326 KOG3621 WD40 repeat-containing 98.7 2.9E-06 6.3E-11 83.5 22.1 289 50-348 32-357 (726)
327 PF08596 Lgl_C: Lethal giant l 98.7 3.3E-05 7.2E-10 74.8 26.8 268 53-335 3-327 (395)
328 PF06433 Me-amine-dh_H: Methyl 98.7 0.0002 4.4E-09 66.2 30.0 246 55-315 39-332 (342)
329 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 59.1 5.9 39 83-121 1-39 (39)
330 PRK02888 nitrous-oxide reducta 98.6 1.9E-05 4.1E-10 78.7 24.5 255 66-333 69-450 (635)
331 KOG1645 RING-finger-containing 98.6 2.6E-06 5.6E-11 78.1 16.8 245 46-303 188-461 (463)
332 PF07433 DUF1513: Protein of u 98.6 0.00025 5.4E-09 64.8 28.8 230 95-340 6-281 (305)
333 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.4E-12 57.7 6.4 39 168-207 1-39 (39)
334 PF11768 DUF3312: Protein of u 98.6 0.00031 6.6E-09 68.6 30.6 112 182-305 209-331 (545)
335 PF04053 Coatomer_WDAD: Coatom 98.6 0.00014 3E-09 71.5 28.2 227 91-348 30-266 (443)
336 PF06433 Me-amine-dh_H: Methyl 98.6 8.1E-05 1.8E-09 68.7 24.7 262 73-349 17-325 (342)
337 KOG1008 Uncharacterized conser 98.5 2.6E-08 5.7E-13 96.1 1.9 200 94-304 57-276 (783)
338 cd00216 PQQ_DH Dehydrogenases 98.5 0.00018 3.9E-09 72.9 29.6 238 64-319 111-440 (488)
339 PF14583 Pectate_lyase22: Olig 98.5 0.00046 1E-08 65.1 29.5 282 50-344 34-381 (386)
340 KOG1008 Uncharacterized conser 98.4 5.8E-08 1.2E-12 93.8 1.4 198 52-252 57-276 (783)
341 PF04053 Coatomer_WDAD: Coatom 98.4 0.00018 3.8E-09 70.8 25.1 220 51-303 32-262 (443)
342 PF06977 SdiA-regulated: SdiA- 98.4 0.0003 6.5E-09 63.3 24.1 202 44-248 14-247 (248)
343 PF11768 DUF3312: Protein of u 98.4 0.00067 1.5E-08 66.3 27.8 75 262-346 257-331 (545)
344 PF00780 CNH: CNH domain; Int 98.4 0.00055 1.2E-08 64.0 27.2 230 61-314 5-266 (275)
345 KOG1920 IkappaB kinase complex 98.4 0.00016 3.4E-09 75.9 23.7 236 93-346 68-324 (1265)
346 PF06977 SdiA-regulated: SdiA- 98.3 0.0018 3.8E-08 58.4 27.2 200 130-341 16-247 (248)
347 PF03178 CPSF_A: CPSF A subuni 98.3 0.001 2.2E-08 63.7 26.2 214 115-343 2-264 (321)
348 PF08553 VID27: VID27 cytoplas 98.3 0.00011 2.4E-09 76.1 20.3 145 104-251 492-647 (794)
349 PF04192 Utp21: Utp21 specific 98.2 1.5E-05 3.2E-10 71.1 11.6 114 411-525 112-235 (237)
350 PF02897 Peptidase_S9_N: Proly 98.2 0.0073 1.6E-07 60.2 33.0 243 52-308 124-409 (414)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0045 9.8E-08 63.1 30.8 271 63-349 69-495 (527)
352 PF03178 CPSF_A: CPSF A subuni 98.2 0.0007 1.5E-08 64.8 23.5 176 158-346 2-204 (321)
353 PF00780 CNH: CNH domain; Int 98.2 0.0024 5.3E-08 59.7 26.0 225 103-349 5-260 (275)
354 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0036 7.8E-08 61.7 28.0 207 56-274 33-269 (410)
355 COG3391 Uncharacterized conser 98.2 0.0074 1.6E-07 59.1 29.6 261 75-349 13-288 (381)
356 COG0823 TolB Periplasmic compo 98.1 0.00024 5.2E-09 69.7 18.9 190 45-241 186-388 (425)
357 COG3391 Uncharacterized conser 98.1 0.007 1.5E-07 59.2 28.9 259 53-326 32-310 (381)
358 PRK02888 nitrous-oxide reducta 98.1 0.00084 1.8E-08 67.3 21.9 136 200-346 214-406 (635)
359 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0028 6.1E-08 61.5 24.2 232 102-345 1-314 (353)
360 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.3E-07 56.2 26.1 245 79-335 16-303 (386)
361 KOG3621 WD40 repeat-containing 98.0 0.00015 3.2E-09 71.9 14.1 144 93-239 33-186 (726)
362 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0059 1.3E-07 60.2 25.5 192 116-328 62-273 (410)
363 KOG4640 Anaphase-promoting com 98.0 3.8E-05 8.3E-10 74.9 9.1 93 51-144 20-114 (665)
364 PF02897 Peptidase_S9_N: Proly 97.9 0.025 5.4E-07 56.4 29.7 242 95-349 125-409 (414)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.015 3.3E-07 59.3 27.9 148 64-214 121-338 (527)
366 PF08596 Lgl_C: Lethal giant l 97.9 0.0021 4.5E-08 62.6 20.7 203 48-251 83-335 (395)
367 KOG3617 WD40 and TPR repeat-co 97.9 0.0001 2.2E-09 74.2 11.6 110 97-210 19-132 (1416)
368 PF08553 VID27: VID27 cytoplas 97.8 0.0026 5.6E-08 66.4 20.3 175 71-251 502-724 (794)
369 COG0823 TolB Periplasmic compo 97.7 0.0015 3.3E-08 64.2 16.5 203 116-335 174-390 (425)
370 KOG2395 Protein involved in va 97.7 0.002 4.4E-08 62.0 16.4 145 103-251 343-500 (644)
371 KOG1897 Damage-specific DNA bi 97.7 0.084 1.8E-06 55.3 28.9 281 51-346 487-817 (1096)
372 COG3386 Gluconolactonase [Carb 97.7 0.035 7.5E-07 52.1 24.5 217 100-334 31-275 (307)
373 PF14727 PHTB1_N: PTHB1 N-term 97.7 0.066 1.4E-06 52.2 32.4 274 63-347 37-363 (418)
374 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0071 1.5E-07 46.2 15.0 100 138-246 2-109 (111)
375 PHA02713 hypothetical protein; 97.6 0.0065 1.4E-07 62.6 19.9 214 74-306 273-536 (557)
376 PRK13616 lipoprotein LpqB; Pro 97.6 0.018 3.9E-07 59.3 21.7 193 72-274 328-550 (591)
377 KOG4640 Anaphase-promoting com 97.5 0.00046 1E-08 67.6 9.3 95 135-232 20-115 (665)
378 KOG4441 Proteins containing BT 97.5 0.013 2.7E-07 60.4 20.2 226 63-305 285-548 (571)
379 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.015 3.3E-07 44.4 15.2 106 181-299 2-110 (111)
380 PRK13616 lipoprotein LpqB; Pro 97.5 0.0097 2.1E-07 61.2 18.9 185 50-245 348-562 (591)
381 KOG4441 Proteins containing BT 97.5 0.018 4E-07 59.2 20.8 226 104-345 284-547 (571)
382 smart00320 WD40 WD40 repeats. 97.5 0.00038 8.2E-09 42.0 5.5 39 83-121 2-40 (40)
383 PF05694 SBP56: 56kDa selenium 97.5 0.071 1.5E-06 51.2 22.5 193 62-255 86-346 (461)
384 KOG2444 WD40 repeat protein [G 97.4 0.00022 4.9E-09 61.1 5.2 144 194-348 33-181 (238)
385 COG3386 Gluconolactonase [Carb 97.4 0.096 2.1E-06 49.2 23.0 209 57-274 30-264 (307)
386 KOG1897 Damage-specific DNA bi 97.4 0.24 5.2E-06 52.0 30.4 283 50-347 529-901 (1096)
387 KOG2079 Vacuolar assembly/sort 97.4 0.0051 1.1E-07 64.4 14.8 102 104-208 98-202 (1206)
388 COG3204 Uncharacterized protei 97.4 0.069 1.5E-06 48.2 19.9 195 45-241 79-302 (316)
389 PHA02713 hypothetical protein; 97.3 0.016 3.5E-07 59.8 18.5 186 62-253 303-535 (557)
390 PRK10115 protease 2; Provision 97.3 0.3 6.4E-06 51.9 33.6 240 52-306 127-397 (686)
391 smart00320 WD40 WD40 repeats. 97.3 0.00072 1.6E-08 40.7 5.3 38 126-164 3-40 (40)
392 KOG2395 Protein involved in va 97.3 0.012 2.7E-07 56.8 15.3 140 193-345 348-501 (644)
393 COG3490 Uncharacterized protei 97.3 0.12 2.7E-06 46.2 22.3 233 53-301 69-346 (366)
394 PF14870 PSII_BNR: Photosynthe 97.3 0.1 2.3E-06 48.6 21.1 154 90-248 141-301 (302)
395 PF05694 SBP56: 56kDa selenium 97.2 0.21 4.6E-06 48.1 23.5 221 104-334 86-393 (461)
396 PRK10115 protease 2; Provision 97.1 0.52 1.1E-05 50.0 31.4 238 95-347 128-397 (686)
397 KOG2444 WD40 repeat protein [G 97.1 0.0012 2.6E-08 56.7 6.0 106 104-210 69-178 (238)
398 KOG2079 Vacuolar assembly/sort 97.1 0.014 3.1E-07 61.2 14.5 101 62-165 98-202 (1206)
399 COG5276 Uncharacterized conser 97.0 0.24 5.3E-06 44.7 26.3 271 51-344 86-369 (370)
400 COG3204 Uncharacterized protei 97.0 0.27 5.9E-06 44.5 20.2 163 132-305 82-265 (316)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.5 1.1E-05 46.2 29.4 90 222-312 307-407 (415)
402 KOG3630 Nuclear pore complex, 96.8 0.012 2.7E-07 62.0 11.7 188 53-241 43-262 (1405)
403 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0054 1.2E-07 39.0 5.6 35 49-84 9-43 (47)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.65 1.4E-05 45.4 26.5 90 98-188 6-118 (415)
405 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0057 1.2E-07 38.9 5.4 33 312-344 9-41 (47)
406 PF15390 DUF4613: Domain of un 96.7 0.11 2.3E-06 51.6 15.8 148 94-250 20-185 (671)
407 PHA03098 kelch-like protein; P 96.6 0.21 4.5E-06 51.7 19.3 184 62-253 294-513 (534)
408 TIGR03074 PQQ_membr_DH membran 96.6 0.74 1.6E-05 49.1 22.9 112 63-175 194-353 (764)
409 PHA03098 kelch-like protein; P 96.5 0.3 6.6E-06 50.5 19.7 145 103-253 293-466 (534)
410 TIGR03074 PQQ_membr_DH membran 96.5 1.5 3.2E-05 46.9 24.3 227 105-350 194-483 (764)
411 PRK13684 Ycf48-like protein; P 96.4 0.98 2.1E-05 43.4 21.4 150 93-249 172-329 (334)
412 COG3490 Uncharacterized protei 96.3 0.77 1.7E-05 41.4 24.0 234 96-344 70-348 (366)
413 KOG4499 Ca2+-binding protein R 96.3 0.23 5.1E-06 43.2 13.8 144 51-198 108-273 (310)
414 PF14870 PSII_BNR: Photosynthe 96.3 1 2.2E-05 42.1 30.0 269 51-341 16-301 (302)
415 PF15390 DUF4613: Domain of un 96.2 0.48 1E-05 47.2 17.4 153 135-304 19-187 (671)
416 KOG3380 Actin-related protein 96.2 0.015 3.3E-07 46.1 5.9 91 394-485 33-138 (152)
417 PHA02790 Kelch-like protein; P 96.1 0.58 1.3E-05 47.5 18.8 181 63-253 272-472 (480)
418 COG3292 Predicted periplasmic 96.1 0.63 1.4E-05 46.1 17.6 271 50-340 163-443 (671)
419 PF05096 Glu_cyclase_2: Glutam 96.1 1.1 2.3E-05 40.6 23.5 181 54-241 47-249 (264)
420 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.88 1.9E-05 44.6 18.4 152 190-345 36-205 (418)
421 PHA02790 Kelch-like protein; P 96.0 0.82 1.8E-05 46.4 19.0 141 104-253 271-425 (480)
422 PRK13684 Ycf48-like protein; P 95.9 1.7 3.6E-05 41.8 29.4 268 51-343 45-330 (334)
423 PF14781 BBS2_N: Ciliary BBSom 95.9 0.69 1.5E-05 36.8 13.8 117 55-174 2-133 (136)
424 KOG1916 Nuclear protein, conta 95.8 0.011 2.3E-07 60.8 4.5 226 114-345 110-375 (1283)
425 PF10168 Nup88: Nuclear pore c 95.8 3.2 7E-05 44.0 23.4 94 94-211 85-181 (717)
426 COG1520 FOG: WD40-like repeat 95.8 2.2 4.7E-05 41.8 28.6 194 62-262 68-278 (370)
427 PF14761 HPS3_N: Hermansky-Pud 95.8 1.2 2.6E-05 38.7 16.2 139 106-250 29-213 (215)
428 KOG2063 Vacuolar assembly/sort 95.7 3.9 8.4E-05 43.9 23.3 235 59-311 22-276 (877)
429 COG5167 VID27 Protein involved 95.6 0.33 7.2E-06 47.2 13.1 146 102-251 476-632 (776)
430 KOG2280 Vacuolar assembly/sort 95.5 0.56 1.2E-05 48.0 15.1 182 157-349 63-251 (829)
431 PF07995 GSDH: Glucose / Sorbo 95.4 2.6 5.7E-05 40.4 29.7 236 95-339 3-330 (331)
432 KOG2280 Vacuolar assembly/sort 95.4 1.7 3.6E-05 44.7 17.9 196 115-325 64-270 (829)
433 PF10647 Gmad1: Lipoprotein Lp 95.4 2.2 4.7E-05 39.1 22.6 135 137-276 25-177 (253)
434 PF12234 Rav1p_C: RAVE protein 95.3 0.92 2E-05 46.7 16.2 110 226-345 33-157 (631)
435 COG5290 IkappaB kinase complex 95.3 0.9 2E-05 46.8 15.5 234 31-276 50-348 (1243)
436 smart00036 CNH Domain found in 95.2 2.8 6.1E-05 39.5 29.5 233 63-313 13-280 (302)
437 KOG2377 Uncharacterized conser 95.1 1.7 3.7E-05 42.0 16.0 134 139-276 26-165 (657)
438 PF04699 P16-Arc: ARP2/3 compl 95.1 0.076 1.6E-06 43.5 6.3 92 394-485 34-138 (152)
439 PF05096 Glu_cyclase_2: Glutam 95.0 2.7 5.8E-05 38.1 25.5 192 84-291 34-249 (264)
440 KOG1916 Nuclear protein, conta 94.9 0.022 4.9E-07 58.6 3.5 162 48-214 129-328 (1283)
441 KOG2247 WD40 repeat-containing 94.9 0.0052 1.1E-07 58.8 -0.8 147 56-207 39-186 (615)
442 PF14781 BBS2_N: Ciliary BBSom 94.9 1.5 3.4E-05 34.9 14.3 118 184-310 4-132 (136)
443 TIGR02604 Piru_Ver_Nterm putat 94.8 1.5 3.3E-05 42.8 16.0 140 53-198 15-202 (367)
444 TIGR02604 Piru_Ver_Nterm putat 94.8 1.9 4.1E-05 42.1 16.7 144 181-335 16-204 (367)
445 KOG2247 WD40 repeat-containing 94.7 0.011 2.4E-07 56.6 0.8 148 97-248 38-185 (615)
446 KOG2377 Uncharacterized conser 94.6 0.78 1.7E-05 44.2 12.5 121 201-332 43-171 (657)
447 KOG3630 Nuclear pore complex, 94.5 0.21 4.5E-06 53.3 9.3 141 53-196 102-260 (1405)
448 PF10168 Nup88: Nuclear pore c 94.3 4.5 9.7E-05 43.0 18.6 93 52-167 85-180 (717)
449 PF10647 Gmad1: Lipoprotein Lp 94.2 4.4 9.4E-05 37.1 22.3 142 95-241 25-184 (253)
450 PF08728 CRT10: CRT10; InterP 94.2 2.7 6E-05 43.8 16.3 110 190-302 113-245 (717)
451 TIGR03548 mutarot_permut cycli 94.0 5.9 0.00013 37.8 21.1 105 147-253 72-196 (323)
452 PF12234 Rav1p_C: RAVE protein 94.0 2.2 4.8E-05 44.0 15.2 109 181-301 32-154 (631)
453 PF02333 Phytase: Phytase; In 93.9 6.6 0.00014 37.9 23.8 188 61-253 66-292 (381)
454 PF10313 DUF2415: Uncharacteri 93.8 0.3 6.6E-06 30.1 5.4 32 136-167 1-34 (43)
455 PF07995 GSDH: Glucose / Sorbo 93.8 6.7 0.00015 37.6 22.9 232 53-298 3-330 (331)
456 KOG4499 Ca2+-binding protein R 93.7 4.6 9.9E-05 35.6 20.1 205 105-324 27-263 (310)
457 PF10313 DUF2415: Uncharacteri 93.7 0.32 7E-06 30.0 5.3 31 52-82 1-34 (43)
458 TIGR03118 PEPCTERM_chp_1 conse 93.6 6 0.00013 36.5 23.4 217 55-274 26-307 (336)
459 PF08728 CRT10: CRT10; InterP 93.2 2.8 6.1E-05 43.7 14.4 112 53-165 102-245 (717)
460 COG5167 VID27 Protein involved 93.1 2.2 4.9E-05 41.8 12.6 143 62-210 478-633 (776)
461 PF07569 Hira: TUP1-like enhan 92.9 0.71 1.5E-05 41.1 8.7 68 58-126 17-98 (219)
462 COG5276 Uncharacterized conser 92.9 7.4 0.00016 35.6 21.9 194 134-346 85-287 (370)
463 COG4257 Vgb Streptogramin lyas 92.7 7.4 0.00016 35.2 22.6 231 53-306 63-308 (353)
464 PF12768 Rax2: Cortical protei 92.5 3.5 7.6E-05 38.2 12.9 93 72-165 15-122 (281)
465 PF07569 Hira: TUP1-like enhan 92.5 0.92 2E-05 40.4 8.9 61 190-250 21-94 (219)
466 KOG1898 Splicing factor 3b, su 92.5 18 0.0004 39.1 19.0 176 159-349 854-1053(1205)
467 TIGR03118 PEPCTERM_chp_1 conse 92.5 8.9 0.00019 35.4 25.4 224 95-324 24-307 (336)
468 COG4590 ABC-type uncharacteriz 92.3 0.37 8E-06 46.2 6.3 160 89-253 216-388 (733)
469 COG3823 Glutamine cyclotransfe 92.1 7.1 0.00015 33.8 13.0 174 62-241 55-248 (262)
470 KOG3616 Selective LIM binding 92.1 6.6 0.00014 40.5 14.9 74 45-121 8-81 (1636)
471 KOG1983 Tomosyn and related SN 92.0 8.4 0.00018 42.8 17.1 232 48-307 32-268 (993)
472 PF10433 MMS1_N: Mono-function 91.9 17 0.00036 37.3 28.0 248 60-324 219-503 (504)
473 PF12768 Rax2: Cortical protei 91.4 6.7 0.00014 36.4 13.3 92 115-208 16-122 (281)
474 PF10214 Rrn6: RNA polymerase 91.3 25 0.00054 38.2 26.5 159 91-252 77-277 (765)
475 KOG1900 Nuclear pore complex, 91.2 5 0.00011 44.2 13.9 138 155-304 96-273 (1311)
476 KOG1983 Tomosyn and related SN 91.2 8.1 0.00017 42.9 15.9 227 94-348 36-268 (993)
477 COG3823 Glutamine cyclotransfe 91.0 9.7 0.00021 33.0 13.9 106 104-213 55-162 (262)
478 PF11635 Med16: Mediator compl 90.8 27 0.0006 37.8 19.6 182 149-339 63-345 (753)
479 smart00036 CNH Domain found in 90.3 16 0.00035 34.5 25.2 227 104-349 12-275 (302)
480 TIGR03547 muta_rot_YjhT mutatr 90.0 19 0.00042 34.7 22.2 53 147-200 63-128 (346)
481 TIGR03548 mutarot_permut cycli 89.8 19 0.00041 34.4 18.7 105 62-169 72-197 (323)
482 KOG1900 Nuclear pore complex, 89.6 4.8 0.0001 44.4 12.1 136 113-253 97-274 (1311)
483 PF10214 Rrn6: RNA polymerase 88.8 39 0.00085 36.8 27.8 126 179-313 146-290 (765)
484 KOG4460 Nuclear pore complex, 88.7 27 0.00059 34.8 16.3 197 64-302 53-273 (741)
485 KOG3616 Selective LIM binding 88.7 6.3 0.00014 40.7 11.5 69 93-165 14-82 (1636)
486 PLN02153 epithiospecifier prot 88.7 24 0.00051 34.0 21.9 63 147-211 85-169 (341)
487 PF10395 Utp8: Utp8 family; I 88.0 37 0.0008 35.5 24.0 157 178-347 129-308 (670)
488 PF14761 HPS3_N: Hermansky-Pud 87.9 18 0.00039 31.7 18.2 103 149-253 29-165 (215)
489 TIGR01063 gyrA DNA gyrase, A s 87.9 45 0.00098 36.3 28.6 254 57-324 490-788 (800)
490 PF12657 TFIIIC_delta: Transcr 87.7 3.8 8.2E-05 35.0 8.4 32 136-167 86-122 (173)
491 PLN00033 photosystem II stabil 87.2 32 0.00069 33.9 26.9 230 53-300 138-396 (398)
492 PF12657 TFIIIC_delta: Transcr 87.0 3.2 7E-05 35.4 7.6 32 315-346 86-123 (173)
493 PF08801 Nucleoporin_N: Nup133 86.9 32 0.00069 34.3 15.8 31 315-345 190-220 (422)
494 PRK14131 N-acetylneuraminic ac 86.6 34 0.00073 33.5 21.7 53 147-200 84-149 (376)
495 TIGR02276 beta_rpt_yvtn 40-res 86.4 3.9 8.5E-05 24.9 5.9 37 286-322 5-41 (42)
496 PRK14131 N-acetylneuraminic ac 86.0 36 0.00079 33.3 21.3 54 103-157 83-149 (376)
497 PF11715 Nup160: Nucleoporin N 85.7 5.8 0.00013 41.2 10.1 74 61-134 156-259 (547)
498 PF11635 Med16: Mediator compl 85.1 62 0.0013 35.1 18.9 181 65-246 64-345 (753)
499 PF07250 Glyoxal_oxid_N: Glyox 84.5 24 0.00051 31.9 12.0 141 160-312 48-206 (243)
500 PF05935 Arylsulfotrans: Aryls 84.1 52 0.0011 33.5 16.1 150 61-217 113-309 (477)
No 1
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-76 Score=537.96 Aligned_cols=483 Identities=44% Similarity=0.663 Sum_probs=451.6
Q ss_pred CCCCCCCcccccccCCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE
Q 038802 29 NLSQTPESKYWSSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 29 ~~~~~~~~~~w~~~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
+.+.+++.++|+.++........++|++++|+|..++=++.+.+-.+.||+..+....+++..+.+.|++++|..||+++
T Consensus 4 ~~~~t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 4 PQSETPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred CcCCCccchhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEE
Confidence 35678899999999999999999999999999998876667777899999999988888899999999999999999999
Q ss_pred EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 109 AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
|+|+..|.|+|||..+...++.+.+|..++..+.|+|.++..+++|++|+.+++||+.+......+.+|++.|+|.+|+|
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred EccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence 99999999999998887788999999999999999998999999999999999999999987668899999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceE
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVT 268 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 268 (532)
.++.+++|||+||+|++||++... .....+.|+.+|.++.+-|.|..+++++++.|++||+.++++.+.....|...|+
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEE
Confidence 888899999999999999999865 6777889999999999999999999999999999999988888888888999999
Q ss_pred EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 269 SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
|+++..+ +..|++++.|+.|++||+.+.+.++.++.+++|.+++.+|+++.++.|.+||.+.+-+...+++
T Consensus 243 cL~l~s~---------~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 243 CLRLASD---------STRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred EEEeecC---------CceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 9999987 6899999999999999999999999999999999999999999999999999999886555443
Q ss_pred cccccccccccCcccccccccCCccceeeecCCCCCCCCCcEEEeCcccccchhHHHhhcccchHHHHHHhhC-CCCChh
Q 038802 349 VESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLN-GKNPEN 427 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~al~~al~-~~~~~~ 427 (532)
.. ..+.++..++..+.+..+++..+++..++++...++.|+..+|+.|++|+|++||+.++. ...|+.
T Consensus 314 ~s-----------~~~~~r~~r~~~~~v~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kkALd~vl~~~~~pel 382 (487)
T KOG0310|consen 314 PS-----------KEPKRRADRSDGFFVKVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKKALDHVLEPKKDPEL 382 (487)
T ss_pred CC-----------ccccccccccccceEeeeccccccccceeEeccccccCCchHHHHHhhhhHHHHHHHHhcccCChhH
Confidence 32 234456677888999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhhchHHHHhcCCChHhHHHHHHHHHhccCCCCchHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Q 038802 428 VVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEE 507 (532)
Q Consensus 428 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~l~~~~~~l~~~~~~ 507 (532)
++++|+||.+|+++..|+.++++..+.+||.||.++++.+||++++.+|...||++|+..+..+|.+.+.+..|+..+++
T Consensus 383 vvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~k~i~~L~~~V~~ 462 (487)
T KOG0310|consen 383 VVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARDIEGSPMLAKLIQALRGKVEQ 462 (487)
T ss_pred HHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhCCC
Q 038802 508 EIRIQQSLQEIQGIISPLLRIAGKR 532 (532)
Q Consensus 508 ~~~~~~~l~~~~g~l~~~~~~~~~~ 532 (532)
|+..|++++++.|+||||.+.+.|+
T Consensus 463 Ev~~q~ellr~~G~ldmL~~~t~~~ 487 (487)
T KOG0310|consen 463 EVRVQKELLRLIGMLDMLGSITMRN 487 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccC
Confidence 9999999999999999999988764
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-56 Score=421.61 Aligned_cols=433 Identities=22% Similarity=0.282 Sum_probs=383.3
Q ss_pred CccCccccCeeEEEE-cCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 45 HQIPGLVSSINSIVF-SPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~-sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
..+.|.++.|.+|+| .|+.+++++++..+.+++|+..+..+. .+.+|++.|.++....+|.+|++|+.|.++++|.++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 456889999999997 567789999999999999998876665 889999999999966788899999999999999884
Q ss_pred CC----ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-----E----EeccCCCCceEEEEEeCCC
Q 038802 124 SR----TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-----V----LDLFGHKDYVRCGDCSPVN 190 (532)
Q Consensus 124 ~~----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~i~~~~~~ 190 (532)
.+ .++....+|...|.+++++......|+++|.|+++++|++...+. . .+...|...|+|++++| +
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-n 474 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-N 474 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-C
Confidence 43 345566799999999999886778999999999999999976221 1 13357999999999999 9
Q ss_pred CCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEE
Q 038802 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTS 269 (532)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 269 (532)
+.+++|||.|++.++|++.+.....++. +|...|.++.|+|..+.+++++ |++|+||.+.+. .++.++.+|...|..
T Consensus 475 dkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLR 552 (775)
T ss_pred CceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccceeEe
Confidence 9999999999999999999655555554 9999999999999999999999 999999999988 999999999999999
Q ss_pred EEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+.|-.+ +..|++++.||.+++|+++++++..++. |...|++++.+|.+.++++|+.||.|.+|.-.+.+.
T Consensus 553 a~F~~~---------~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 553 ASFIRN---------GKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred eeeeeC---------CcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHH
Confidence 999988 6899999999999999999999999998 999999999999999999999999999999888765
Q ss_pred cccccccccccCcccccccccCCccceeeecCCCCCCCCCcEEEeCcccccchhHHHhhcccchHHHHHHhhCCCCChhH
Q 038802 349 VESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLNGKNPENV 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~al~~al~~~~~~~~ 428 (532)
.. ++....+++..+.|+++++|.+++|.+|+.+|+.+..|..+
T Consensus 624 ~~-------------------------------------ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~ 666 (775)
T KOG0319|consen 624 QN-------------------------------------EEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLV 666 (775)
T ss_pred HH-------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhH
Confidence 42 22222233456688999999999999999999999999999
Q ss_pred HHHHHHHHhh---chHHHHhcCCChHhHHHHHHHHHhccCCCCchHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHH
Q 038802 429 VAVMEELVAR---KKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRT-CDALKGHIRNLKRS 504 (532)
Q Consensus 429 ~~~~~~l~~~---~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~-~~~l~~~~~~l~~~ 504 (532)
+.++..+.+. .+|..++..+++++.+-||+|+.+|+||+|++.+++.+|..+|..+.+.-.. -|...++++.|..+
T Consensus 667 f~vi~~~~r~r~~e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PY 746 (775)
T KOG0319|consen 667 FTVINALYRERDPEELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPY 746 (775)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhH
Confidence 9999955444 4699999999999999999999999999999999999999999998876544 49999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHh
Q 038802 505 VEEEIRIQQSLQEIQGIISPLLR 527 (532)
Q Consensus 505 ~~~~~~~~~~l~~~~g~l~~~~~ 527 (532)
+++|.+++.++.+-...||.++-
T Consensus 747 tqRHf~Rid~~~~~~~lLdf~~~ 769 (775)
T KOG0319|consen 747 TQRHFRRIDRLVQDSALLDFTWF 769 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHHhhh
Confidence 99999999999999999998764
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-50 Score=380.85 Aligned_cols=480 Identities=17% Similarity=0.259 Sum_probs=393.2
Q ss_pred cccccCCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC-CC
Q 038802 38 YWSSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS-GL 116 (532)
Q Consensus 38 ~w~~~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~ 116 (532)
+|...+.+-+......|+|.+|++....|++|-.+|...+|.+.....++.+.-...+|..++|+..|.+||.|+.. |.
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccce
Confidence 56655555566666899999999999999999999999999999999999999888999999999999999998754 89
Q ss_pred EEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEE
Q 038802 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVT 196 (532)
Q Consensus 117 i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 196 (532)
+-||+..+...+...++|...+++++++| |+.++++|++||.|++||..++-|..++..|+..|+.+.|+. .++.+++
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999998 9999999
Q ss_pred EeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC-eEEEEEccCCCeeeEEccCCCcceEEEEEec
Q 038802 197 GSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGR 274 (532)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 274 (532)
++-||+|+.||+.......+++.+......|++..|.|.++++|+ |. .|.+|++.++ +.+..+.+|.++|.+++|+|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEcc
Confidence 999999999999988788888877778888999999999999998 65 8999999998 99999999999999999999
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCC-ceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccccccc-
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGK-MKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVESG- 352 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~- 352 (532)
. +..|+++|.|.+|++||+-. ...+.++.+...+++++|+|||+.+++++-||.|.+||.+.......-
T Consensus 489 ~---------~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 489 D---------GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred c---------cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9 67999999999999999754 445666667777777778888877777777877777776653211000
Q ss_pred ----ccc----------------------------------------------------ccccCc---------------
Q 038802 353 ----IEN----------------------------------------------------FWSLGR--------------- 361 (532)
Q Consensus 353 ----~~~----------------------------------------------------~~~~~~--------------- 361 (532)
... .|.+..
T Consensus 560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rk 639 (893)
T KOG0291|consen 560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRK 639 (893)
T ss_pred chhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcccc
Confidence 000 000000
Q ss_pred ----------------------------------ccccccccCCccceeeecCCCCCCCCCc--EEEeCcc---------
Q 038802 362 ----------------------------------VETQKPMLRPTYFRYFQRGQSDKPSEGD--YLVVRPK--------- 396 (532)
Q Consensus 362 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------- 396 (532)
.++-++.++....+|-..|+.+....-| .+.+...
T Consensus 640 mtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~L 719 (893)
T KOG0291|consen 640 MTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDL 719 (893)
T ss_pred ccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEccccc
Confidence 0111122222233333444444322211 1112111
Q ss_pred --cccchhHHHhhcccchHHHHHHhhCCCCChhHHHHHHHHHhhchHHHHhcCCChHhHHHHHHHHHhccCCCCchHHHH
Q 038802 397 --KLKLGEHDKLLKKFRHKEALVSVLNGKNPENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLI 474 (532)
Q Consensus 397 --~~k~~~~~~~l~~~~~~~al~~al~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 474 (532)
...-.....+|++++|.+||.++|++|++..+-.+++.... +.++.+.+.+|..++++||+++.+.+.+.+|.++.+
T Consensus 720 D~~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~-~~Ie~V~~~Lp~~y~erll~~l~~~l~~s~HieF~l 798 (893)
T KOG0291|consen 720 DVDVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPI-KDIELVASSLPTAYLERLLKALSRFLENSPHIEFYL 798 (893)
T ss_pred ccccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCCh-hhhhhhhhcCcHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 11222356799999999999999999999888888776554 779999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhhhC
Q 038802 475 GLMEKVLEMRAKDIRTC-DALKGHIRNLKRSVEEEIRIQQSLQEI-QGIISPLLRIAG 530 (532)
Q Consensus 475 ~~~~~il~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~l~~~-~g~l~~~~~~~~ 530 (532)
.|++.||..|+.++... ..+..+|..|++.|.++.+.+.+|+.. +.+|-.|++.+.
T Consensus 799 ~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv~~~~ 856 (893)
T KOG0291|consen 799 RWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLVSKRQ 856 (893)
T ss_pred HHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhhh
Confidence 99999999999999876 557778999999999999999999998 788888887654
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-50 Score=353.65 Aligned_cols=293 Identities=24% Similarity=0.357 Sum_probs=268.8
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
..+.||.++|.|+.|+|+|+.|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||.++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceE-EEecCCCCCEEEEEeecC----CCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 125 RTPL-RRLKSHTRPVRFVKYPFL----DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 125 ~~~~-~~~~~h~~~i~~~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
++++ ..+.+|...|++++|.|. ...+|++++.||.|+|||+..+.++..+.+|+.+|+|+.|- ...++++||.
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~ 266 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQ 266 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCC
Confidence 8655 578999999999999762 45689999999999999999999999999999999999996 4689999999
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEe-----------cCC-------------------------CEEEEEc-C
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFL-----------PSG-------------------------GLIATAG-G 242 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-----------~~~-------------------------~~l~~~~-d 242 (532)
|++|++|+...+.....+. +|...|+.++.+ |.+ ..+++|+ |
T Consensus 267 DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 9999999998866665555 888899988877 222 3489999 6
Q ss_pred CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEE
Q 038802 243 NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVA 321 (532)
Q Consensus 243 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 321 (532)
.++.+|+.....+++..+.+|..-|+.+.|||+ +.++++++.|..|++||-.+|+.+.+|+ |-++|+.++
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd---------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD---------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCC---------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 799999988777899999999999999999999 7899999999999999999999999998 889999999
Q ss_pred EecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 322 FSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 322 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
|+.|.+.|++|+.|.++++|++++++..
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeec
Confidence 9999999999999999999999988654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-50 Score=352.25 Aligned_cols=304 Identities=24% Similarity=0.354 Sum_probs=277.0
Q ss_pred CCCCCCCCCcccccccCC---CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEE-EEeeccCceeEEEEEc
Q 038802 27 PRNLSQTPESKYWSSFKP---HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKH-SAISSFKDVVTCSSFR 102 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~v~~~~~~ 102 (532)
..+.+-+.++|+|+.... .+..+|...|.|++|+|||+.+|+|+.||.|++||..+++++ ..+.+|...|++++|.
T Consensus 130 l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawe 209 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWE 209 (480)
T ss_pred EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeec
Confidence 445577889999997654 445899999999999999999999999999999999887665 5689999999999997
Q ss_pred c-----CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC
Q 038802 103 P-----DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH 177 (532)
Q Consensus 103 ~-----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 177 (532)
| ..++||+++.||+|+|||+..+.++..+.+|+.+|+|+.|- ...++++||.|++|++|+...|.+...+.+|
T Consensus 210 p~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGH 287 (480)
T KOG0271|consen 210 PLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGH 287 (480)
T ss_pred ccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhccc
Confidence 6 56799999999999999999999999999999999999996 5779999999999999999999999999999
Q ss_pred CCceEEEEEe-----------C------------------------CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC
Q 038802 178 KDYVRCGDCS-----------P------------------------VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG 222 (532)
Q Consensus 178 ~~~v~~i~~~-----------~------------------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 222 (532)
...|+.++.+ | ..+..+++|+.|.++.+|+....+.......+|.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq 367 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ 367 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence 9999999887 1 0123599999999999999876655555556899
Q ss_pred CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 223 KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 223 ~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.-|+.+.||||++++++++ |..|++||.+++ +.+.++.+|-..|+.++|+.| .++|++|+.|.++++||
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaD---------sRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSAD---------SRLLVSGSKDSTLKVWD 437 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccC---------ccEEEEcCCCceEEEEE
Confidence 9999999999999999999 999999999998 889999999999999999998 78999999999999999
Q ss_pred CCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 302 YGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 302 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+++.++...+. |...|.+++|+|||+.+++|+.|..+++|.
T Consensus 438 V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999998888 889999999999999999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=349.57 Aligned_cols=283 Identities=24% Similarity=0.355 Sum_probs=271.3
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccC--CCEEEEEcCCCCEEEEECCCC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPD--GSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 125 (532)
.|-..+|..+.|+++++.+++|+.+|.+++|+..+...+.++.+|.+.|.++.|+|. +..+|+|+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467789999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
.++..+.+|...|..++|+| +|++|+|+|.|.+-++||++++..+....+|+..|.+++|+| +|.+++||+.|..-+|
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRV 329 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhhe
Confidence 99999999999999999999 999999999999999999999999988999999999999999 9999999999999999
Q ss_pred EEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcccc
Q 038802 206 WDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
||++++.++..+. +|..+|.+++|+|+|..+++|+ |++++|||++.. ..+.++.+|..-|+.++|+|..
T Consensus 330 WDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~-------- 399 (459)
T KOG0272|consen 330 WDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQE-------- 399 (459)
T ss_pred eecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccC--------
Confidence 9999988887777 7999999999999999999999 999999999987 7799999999999999999954
Q ss_pred ccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 285 QYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+.+|+|++.|++++||...++.++.++. |.+.|.+++++||++++++++.|.++++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8899999999999999999999999987 899999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.5e-44 Score=305.28 Aligned_cols=285 Identities=24% Similarity=0.358 Sum_probs=261.8
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
..+.||.+.|.++.|++|++++++++.||.+.|||.-+....+.++.....|..++|+|.|+++|+|+-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 56899999999999999999999999999999999999888888988899999999999999999999999999999985
Q ss_pred C------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 125 R------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 125 ~------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
. ...+.+.+|.+-+.|+.|.+ ..+|+++|.|.++.+||+++++.+..+.+|.+.|.+++++|.+++.|++|+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 5 35567889999999999984 667999999999999999999999999999999999999998999999999
Q ss_pred CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc--CCCcceEEEEEecc
Q 038802 199 YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME--SHNKTVTSVCVGRV 275 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~ 275 (532)
-|++.++||+|.+.....+. +|...|++++|.|+|.-+++|+ |++.++||++.. +.+..+. .-..+|++++||..
T Consensus 207 cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEccc
Confidence 99999999999986666665 8999999999999999999999 789999999987 4444443 34458999999998
Q ss_pred CCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 276 GNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 276 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+++|++|..|..+.+||.-.++.+..+. |++.|.++..+|||..+++|+.|..++||.
T Consensus 285 ---------GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 ---------GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---------ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 7899999999999999999888887776 999999999999999999999999999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-42 Score=293.99 Aligned_cols=286 Identities=23% Similarity=0.401 Sum_probs=248.0
Q ss_pred CccCccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCC-----CceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEE
Q 038802 45 HQIPGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQ-----TLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQ 118 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 118 (532)
.++.+|.+.|+.++..+.++ .+++++.|..+.+|++. .|...+.+.+|...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 46789999999999998854 77788999999999864 4778899999999999999999999999999999999
Q ss_pred EEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC-CCCceEEEEEeCCC-CCEEEE
Q 038802 119 VFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG-HKDYVRCGDCSPVN-GDMFVT 196 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~-~~~l~s 196 (532)
+||+.+++..+.|.+|...|.+++|++ ++..+++||.|.+|++||+-.......... +.+.|+|+.|+|.. ..++++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 999999999999999999999999999 889999999999999999875544333333 38999999999943 679999
Q ss_pred EeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEecc
Q 038802 197 GSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRV 275 (532)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 275 (532)
++.|+++++||+++.+....+ .+|.+.++.+.+||||.++++|+ ||.+.+||++.+ +.+..+ .|...|.+++|+|+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPN 244 (315)
T ss_pred ccCCceEEEEccCCcchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCC
Confidence 999999999999985544444 48999999999999999999999 999999999988 666666 57889999999997
Q ss_pred CCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC----------CCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 276 GNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP----------APLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 276 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
.+.+++..+..|+|||+.++.++..++.+ ....+++|++||..|++|-.|+.|++|.+.
T Consensus 245 ----------rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 245 ----------RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 35555555667999999998888776521 235678999999999999999999999875
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=324.67 Aligned_cols=444 Identities=21% Similarity=0.273 Sum_probs=351.0
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
..++.||...|.++++|.+...+++|+ .+.++||+..+.++++++.. +.+.|..|.|.++++++|...|.+.+||+.
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 346789999999999999886666554 58899999999999999975 488999999999999999999999999999
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC-----CeE--EEe-----ccCCCCceEEEEEeCCCC
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG-----ESV--VLD-----LFGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~--~~~-----~~~~~~~v~~i~~~~~~~ 191 (532)
+...+.+++.|.+.|++++.+| ++..+++||.|.+|++||..- +.. +.. .-.-.+.|.|+.++| ++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dg 520 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DG 520 (888)
T ss_pred hhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CC
Confidence 9999999999999999999999 999999999999999999741 111 111 112467899999999 99
Q ss_pred CEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEE
Q 038802 192 DMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSV 270 (532)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 270 (532)
.+|+.+--|.++++|-+.+.+.... ..+|.-||.|+..+||++++++|+ |.+|++|-+.-+ .|-..+.+|...|.++
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFfls-LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLS-LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSV 598 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeee-ecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEE
Confidence 9999999999999999988544333 349999999999999999999999 999999998876 8889999999999999
Q ss_pred EEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 271 CVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.|.|. ...++++|.|+.|+-||-...+.+..+. |...|+|++.+|+|.++++++.|.+|++|....+.-.
T Consensus 599 ~F~P~---------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 599 QFLPK---------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred EEccc---------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 99998 6789999999999999999999998887 8899999999999999999999999999998764211
Q ss_pred -----ccccccccc-cCcccccccccCCccceeeecCCCCCCCCCcEEEeCcccccch-------hHH---H-hhcccch
Q 038802 350 -----ESGIENFWS-LGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLG-------EHD---K-LLKKFRH 412 (532)
Q Consensus 350 -----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-------~~~---~-~l~~~~~ 412 (532)
+...|+... +-..... ..+.... ........++....++ .++ + +.+..+|
T Consensus 670 lEeekE~ErEe~yE~l~~~~e~------------~~~~~~~-~g~~~~~skkTieSvk~aE~i~ea~di~~~e~~~~ee~ 736 (888)
T KOG0306|consen 670 LEEEKEGEREEEYETLLASEEV------------VAGDGSA-DGDAGVASKKTIESVKSAERILEALDIGREELTQLEEY 736 (888)
T ss_pred eehhhhhhhHHHHHHhhhhccc------------ccCCCcc-cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 111111111 0000000 0000000 0111111111111111 122 1 1111222
Q ss_pred -----HHHHHHhhCCCCC-hhHHHHHHHHHhhchHHHHhcCCChHhHHHHHHHHHhccCCCCchHHHHHHHHHHHHhccc
Q 038802 413 -----KEALVSVLNGKNP-ENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAK 486 (532)
Q Consensus 413 -----~~al~~al~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~il~~~~~ 486 (532)
..++..|+. +.| +.++.++..+.. ..|+.++.-+|-.++..+|+|+..++.++...+++.+++-.++++|..
T Consensus 737 ~~g~P~npll~a~~-ks~e~yi~dtl~~Ir~-S~Ld~aLlllPfS~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~~ 814 (888)
T KOG0306|consen 737 SPGHPHNPLLNAYN-KSPEKYIVDTLMKIRA-SELDDALLLLPFSYVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHHK 814 (888)
T ss_pred cCCCCCcHHHHHhc-CCHHHHHHHHHHhcch-hhhhhhheeccHHHHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhhh
Confidence 157778888 566 567777765543 889999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038802 487 DIRTCDALKGHIRNLKRSVEEEIRIQQSLQEI 518 (532)
Q Consensus 487 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 518 (532)
.+...+.+...|++|+..+.+-++........
T Consensus 815 ~it~~~~~kp~l~~i~s~l~~~v~q~rdv~G~ 846 (888)
T KOG0306|consen 815 QITAHKNMKPLLEKIKSKLREIVEQLRDVLGF 846 (888)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999998888877766655443
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-43 Score=311.82 Aligned_cols=261 Identities=23% Similarity=0.384 Sum_probs=243.2
Q ss_pred CCCCCCCCcccccccCC---CccCccccCeeEEEEcCC--CCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEc
Q 038802 28 RNLSQTPESKYWSSFKP---HQIPGLVSSINSIVFSPT--TSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFR 102 (532)
Q Consensus 28 ~~~~~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (532)
...+-++..++|+.-.. .++.||.+.|.++.|+|. +..+|+|+.||++++|++.+...+..+.+|...|..++|+
T Consensus 191 aT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 191 ATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred EEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 34567888999987655 446899999999999998 5589999999999999999989999999999999999999
Q ss_pred cCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE
Q 038802 103 PDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR 182 (532)
Q Consensus 103 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 182 (532)
|+|++|++++.|.+-++||+.++..+....||...|.+++|.| +|.+++|||.|..-+|||++++.++..+.+|...|.
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEeccccccee
Confidence 9999999999999999999999999988999999999999999 999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
+++|+| +|..+||||.|++++|||++......++ ..|..-|+.++|+| .|.+|++++ |+++++|...+. .++.++
T Consensus 350 ~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksL 426 (459)
T KOG0272|consen 350 SVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSL 426 (459)
T ss_pred eEeECC-CceEEeecCCCCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhh
Confidence 999999 9999999999999999999986664444 38999999999999 788999999 999999998877 899999
Q ss_pred cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 261 ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.+|.+.|.++.++++ +.++++++.|.++++|.
T Consensus 427 aGHe~kV~s~Dis~d---------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPD---------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccC---------CceEEEeccCceeeecc
Confidence 999999999999999 68999999999999995
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-41 Score=278.64 Aligned_cols=272 Identities=20% Similarity=0.312 Sum_probs=244.6
Q ss_pred eEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc--eEEEecCCCCCEEEEE
Q 038802 65 HLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT--PLRRLKSHTRPVRFVK 142 (532)
Q Consensus 65 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~ 142 (532)
+|++++.|.+|++|...+|.+..+++...+.|+.+.+.||++.||+++ ...|++||+.++. ++.++.+|...|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 788999999999999999999999998889999999999999999998 5679999998764 6889999999999999
Q ss_pred eecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC
Q 038802 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG 222 (532)
Q Consensus 143 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 222 (532)
|.. ++..+++||+||+++|||++...+-+.+ .|..+|+++..+| +...|++|..+|.|++||+..............
T Consensus 91 F~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred Eee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 998 9999999999999999999986655544 4789999999999 888899999999999999998766666666777
Q ss_pred CcEEEEEEecCCCEEEEEc-CCeEEEEEccCC-----CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe
Q 038802 223 KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG-----GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 223 ~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
.+|.++...|+|.+++++. .|..++|++.+. -.++..++.|.+.+..+.+||+ .++|+++|.|.+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd---------~k~lat~ssdkt 238 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD---------VKYLATCSSDKT 238 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC---------CcEEEeecCCce
Confidence 8999999999999999998 689999998653 2567778899999999999999 789999999999
Q ss_pred EEEEECCCc-eEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 297 MKVFDYGKM-KVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 297 i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
++||+.++. +....+. |..-++.++||.||+||++|++|+.+++|++..++++
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 999999987 4444444 6778999999999999999999999999999998866
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=295.47 Aligned_cols=288 Identities=20% Similarity=0.351 Sum_probs=265.9
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
.+.||.+.|.|+++.|...++++|+.|+++.|||+.+++...++.+|...|..+++++...|+++++.|+.|+.||++..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
+.++.+.+|-+.|.|++.+| .-..|++|+.|.++++||+++...+..+.+|..+|..+.+.| -+..+++||.|++|++
T Consensus 226 kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRL 303 (460)
T ss_pred hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEE
Confidence 99999999999999999999 888999999999999999999999999999999999999999 6677999999999999
Q ss_pred EEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccc
Q 038802 206 WDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQ 285 (532)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 285 (532)
||++.++...... .|...|.+++.+|....+++++-+.|+-|++..+ ..+..+.+|...|+++....++
T Consensus 304 WDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dnik~w~~p~g-~f~~nlsgh~~iintl~~nsD~--------- 372 (460)
T KOG0285|consen 304 WDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDNIKQWKLPEG-EFLQNLSGHNAIINTLSVNSDG--------- 372 (460)
T ss_pred eeeccCceeEeee-cccceeeEEecCCchhhhhccCCccceeccCCcc-chhhccccccceeeeeeeccCc---------
Confidence 9999987766665 8999999999999999999999889999999887 6677799999999999998774
Q ss_pred cEEEEEecCCeEEEEECCCceEEEeee---------cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 286 YRILSVALDGYMKVFDYGKMKVTHSMR---------FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
++++|+.+|.+.+||.+++-..+... .+..|++.+|...|..|++|..|.+|++|+-+...
T Consensus 373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 89999999999999999876554442 34578999999999999999999999999876543
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-42 Score=308.87 Aligned_cols=287 Identities=21% Similarity=0.354 Sum_probs=260.3
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCce
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
..-..+|..+.|.|+|+.|++|+..|.+.+|+..+......++.|.++|.++.|+++|.++++|+.+|.|++|+..- ..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nn 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NN 171 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hh
Confidence 44556899999999999999999999999999877666667789999999999999999999999999999999764 34
Q ss_pred EEEecCC-CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 038802 128 LRRLKSH-TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206 (532)
Q Consensus 128 ~~~~~~h-~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 206 (532)
++.++.| ...|++++|+| +...++++|+||+|+|||....+.-..+.+|.-.|.+++|+| ...++++||.|..|++|
T Consensus 172 Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLW 249 (464)
T ss_pred hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEee
Confidence 5555555 49999999999 778899999999999999999888888899999999999999 88899999999999999
Q ss_pred EcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccc
Q 038802 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQ 285 (532)
Q Consensus 207 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 285 (532)
|.+++.+..... .|...|..+.|+|++++|++++ |..+++||+++. +.+..+.+|...++++.|+|-. .
T Consensus 250 DprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~--------~ 319 (464)
T KOG0284|consen 250 DPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLN--------E 319 (464)
T ss_pred cCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeecccccc--------c
Confidence 999988887776 8999999999999999999999 999999999976 7788999999999999999986 7
Q ss_pred cEEEEEecCCeEEEEECCCceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 286 YRILSVALDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
.+|.+|+.||.|..|.+...+++..+. |...|++++|+|-|..|++|+.|.++++|......
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 899999999999999998666666665 88999999999999999999999999999987653
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-41 Score=295.65 Aligned_cols=286 Identities=22% Similarity=0.391 Sum_probs=268.0
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.|..++|+..|+++++++.|-.+.+||.++
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred -CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 125 -RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 125 -~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
.++++...+|...|.+++|-| .++++++++.|.+|+.|++.++.++.++.+|...|..+..+. +|.++++++.|.++
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl 259 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceE
Confidence 577888889999999999999 889999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecC---------------CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcce
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPS---------------GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTV 267 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~---------------~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i 267 (532)
++|-+.+..+...+. .|..+|.+++|.|. +.++.+++ |++|++||+.++ .++.++.+|...|
T Consensus 260 ~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 260 RVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWV 337 (406)
T ss_pred EEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEeccccee
Confidence 999999876666555 78999999999773 25888888 999999999998 9999999999999
Q ss_pred EEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 268 TSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
..++|+|. |+||+++..|+++++||++++++..++. |+.-+++++|..+..++++|+-|..+++|..
T Consensus 338 r~~af~p~---------Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPG---------GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcCC---------CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999 7899999999999999999999999988 8889999999999999999999999999974
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-40 Score=299.49 Aligned_cols=297 Identities=20% Similarity=0.311 Sum_probs=264.8
Q ss_pred CccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCC--ceEEE--Ee----------eccCceeEEEEEccCCCEEEEEc
Q 038802 48 PGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQT--LEKHS--AI----------SSFKDVVTCSSFRPDGSLLAASD 112 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~--~~~~~--~~----------~~~~~~v~~~~~~~~~~~l~~g~ 112 (532)
..|..+|.+++|+|-.. .+++|+.+...++|++.. ..... .+ ...+..|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999876 889999999999999864 11100 01 01236899999999999999999
Q ss_pred CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCC
Q 038802 113 LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGD 192 (532)
Q Consensus 113 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 192 (532)
.||.+++|+.. |..+.++..|.++|.++.|+. .+++|++++.|+++.+||..++...+.+.-|+.+-..+.|- +..
T Consensus 255 ~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~ 330 (524)
T KOG0273|consen 255 EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SND 330 (524)
T ss_pred cCcEEEEEecC-chhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCc
Confidence 99999999965 778889999999999999998 99999999999999999999999999999899886778887 467
Q ss_pred EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEE
Q 038802 193 MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVC 271 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 271 (532)
-|++++.|+.|+++.+....+...+. +|.++|.++.|+|.|.+|++++ |++++||+.... .....+..|...|..+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~ 408 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIK 408 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEe
Confidence 79999999999999998766666666 6999999999999999999999 899999998766 78899999999999999
Q ss_pred EeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEee-ecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccccc
Q 038802 272 VGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM-RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVE 350 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 350 (532)
|+|.+........+..+++++.|++|++||+..+.+++.+ +|..+|++++|+|+|+++++|+.||.|.+|+.++++...
T Consensus 409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 9999987777778899999999999999999999999999 699999999999999999999999999999999987663
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.5e-40 Score=295.93 Aligned_cols=304 Identities=17% Similarity=0.299 Sum_probs=270.4
Q ss_pred CCCCCCCCCCcccccccC------CC-c------c----CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEE
Q 038802 26 KPRNLSQTPESKYWSSFK------PH-Q------I----PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSA 88 (532)
Q Consensus 26 ~~~~~~~~~~~~~w~~~~------~~-~------~----~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~ 88 (532)
.....+.+...++|+... .+ . . ...+..|++++|+.+|..||+|+.||.++||+.. |..+.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 334445666778887653 10 0 1 1223579999999999999999999999999954 788889
Q ss_pred eeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC
Q 038802 89 ISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE 168 (532)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 168 (532)
+..|.++|.++.|+.+|.||++++.||++.+||..++...+.+..|..+-.++.|- +...+++++.|+.|+++.+...
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999987888997 5667999999999999999999
Q ss_pred eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCC---------CEEEE
Q 038802 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG---------GLIAT 239 (532)
Q Consensus 169 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~ 239 (532)
.++.++.+|.+.|.++.|+| .+.+|+++|+|++++||..........+. .|...|..+.|+|.| ..+++
T Consensus 350 ~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEE
Confidence 99999999999999999999 99999999999999999987755555444 789999999999964 36677
Q ss_pred Ec-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCee
Q 038802 240 AG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLM 318 (532)
Q Consensus 240 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 318 (532)
++ |++|++||+..+ .++..+..|+.+|++++|+|+ +.++++|+.||.|.+|+..++++++.+...+.|.
T Consensus 428 as~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~---------g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~If 497 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPN---------GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIF 497 (524)
T ss_pred eecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCC---------CcEEEecCCCCeeEeccccchheeEeecCCCeEE
Confidence 76 999999999988 899999999999999999999 7899999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCcEEEEeec
Q 038802 319 SVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 319 ~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
.++|+.+|.++..+-+||.+++-|+.
T Consensus 498 el~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999998875
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=307.07 Aligned_cols=319 Identities=22% Similarity=0.336 Sum_probs=256.2
Q ss_pred CCCcccccccCCCcc---C-ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC--
Q 038802 33 TPESKYWSSFKPHQI---P-GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS-- 106 (532)
Q Consensus 33 ~~~~~~w~~~~~~~~---~-~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 106 (532)
..-.++|..-....+ . -|.+||.-++|+|.+..+++|+.|+.+++||+..+.....+++|.+.|.++.|+|+-.
T Consensus 83 s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 83 SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 344456654443222 3 4999999999999999999999999999999999999999999999999999999654
Q ss_pred EEEEEcCCCCEEEEECCCCc-eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE-------------
Q 038802 107 LLAASDLSGLIQVFDVKSRT-PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL------------- 172 (532)
Q Consensus 107 ~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------- 172 (532)
.|++|..|+++++||+.+.. ++..+..|.+.|+++.|.+ ++..++++|.|..+.+||+.+.+...
T Consensus 163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~ 241 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR 241 (775)
T ss_pred heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence 58899999999999998654 4778889999999999998 77788888888888888863111000
Q ss_pred --------------------------------------------------------------------------------
Q 038802 173 -------------------------------------------------------------------------------- 172 (532)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (532)
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG 321 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence
Q ss_pred --------------------------------------eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE--------
Q 038802 173 --------------------------------------DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW-------- 206 (532)
Q Consensus 173 --------------------------------------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw-------- 206 (532)
.+.+|++.|.+++... +|.+|+|||.|.++++|
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcch
Confidence 0114555555555322 34455555555555555
Q ss_pred ---------------------------------------EcccCCc---eeE-----EEecCCCcEEEEEEecCCCEEEE
Q 038802 207 ---------------------------------------DVRVENS---KSV-----MEVNHGKPIEDVMFLPSGGLIAT 239 (532)
Q Consensus 207 ---------------------------------------d~~~~~~---~~~-----~~~~~~~~v~~i~~~~~~~~l~~ 239 (532)
++...+. ... ....|+..|++++++|+.+++++
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 4433110 011 12258899999999999999999
Q ss_pred Ec-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCe
Q 038802 240 AG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPL 317 (532)
Q Consensus 240 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v 317 (532)
|+ |.+.+||++... .....+.+|...|+++.|+|. ...++|+|.|++|+||.+.++.++.++. |...|
T Consensus 481 ~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~---------dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKN---------DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred cccccceeeecccCc-eEEEEeeCCccceEEEEeccc---------cceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 99 999999999965 899999999999999999998 6899999999999999999999999998 89999
Q ss_pred eEEEEecCCCEEEEEecCCcEEEEeecCcccc---ccccccccccCccc
Q 038802 318 MSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV---ESGIENFWSLGRVE 363 (532)
Q Consensus 318 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~ 363 (532)
..+.|-.+|+.|+++++||.|++|++++++.+ ..+..+.|.+....
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 99999999999999999999999999999766 56667799886443
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.3e-39 Score=275.41 Aligned_cols=285 Identities=19% Similarity=0.318 Sum_probs=253.8
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeC-CCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSS-QTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
.++||.+.|+.+.|+|+|.++|+|+.|..|.+|+. ...+....+++|.++|..+.|.+|+..|++++.|.+|+.||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 46899999999999999999999999999999995 44566777889999999999999999999999999999999999
Q ss_pred CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 125 ~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
|+.++.+++|..-|+++.-+..+..++.+|+.|+++++||+++...++++. ....++++.|.. .+..+.+|+-|+.|+
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIK 199 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc-cccceeeccccCcee
Confidence 999999999999999998655456788899999999999999988887775 466799999998 889999999999999
Q ss_pred EEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC---CeeeEEccCCCc----ceEEEEEeccC
Q 038802 205 LWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG---GKMVYSMESHNK----TVTSVCVGRVG 276 (532)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~----~i~~~~~~~~~ 276 (532)
+||++......+.. +|..+|+.+..+|+|.++.+-+ |.++++||++.. .+++..+.+|.. ....++|+|+
T Consensus 200 vWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~- 277 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN- 277 (338)
T ss_pred eeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC-
Confidence 99999877666665 9999999999999999999999 999999999742 355777776543 4567889998
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+..+.+|+.|..+++||......+..+. |.+.|++++|+|...+|.+++.|.+|++=.
T Consensus 278 --------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 278 --------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred --------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 6789999999999999999988887776 889999999999999999999999998743
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-39 Score=311.97 Aligned_cols=244 Identities=24% Similarity=0.402 Sum_probs=228.0
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC-------------------------------ceEEEEeeccCcee
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT-------------------------------LEKHSAISSFKDVV 96 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~-------------------------------~~~~~~~~~~~~~v 96 (532)
..-...++|..|++|++.+|.|..|..|++|.+.. .....++.+|.++|
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 34456899999999999999999999999998752 11344578999999
Q ss_pred EEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 97 TCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
..+.|+|+.++|++|+.|+++++|.+.+..++..+++|..||+++.|+| .+.+++|+|.|++-++|......+.+.+.+
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCe
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGK 255 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~ 255 (532)
|-+.|.|+.|+| +.+++++||.|.+|++||+.++.....+. +|.++|.+++|||+|++|++|+ ||.|.+||+.++ .
T Consensus 534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~ 610 (707)
T KOG0263|consen 534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-S 610 (707)
T ss_pred cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-c
Confidence 999999999999 99999999999999999999988887776 8999999999999999999999 999999999987 8
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
.+..+.+|.+.|.++.|+.+ +..|++||.|.+|++||+..
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~d---------g~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRD---------GNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred chhhhhcccCceeEEEEecC---------CCEEEecCCCCeEEEEEchh
Confidence 89999999999999999999 68999999999999999864
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=272.53 Aligned_cols=263 Identities=22% Similarity=0.346 Sum_probs=239.4
Q ss_pred CCCCCCCCCcccccccCC---CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc------eEEEEeeccCceeE
Q 038802 27 PRNLSQTPESKYWSSFKP---HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL------EKHSAISSFKDVVT 97 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~------~~~~~~~~~~~~v~ 97 (532)
..+.++++..-+|+.+.. +.++-....|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|.+.+.
T Consensus 70 ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS 149 (343)
T KOG0286|consen 70 IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS 149 (343)
T ss_pred EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE
Confidence 344578999999998764 456777889999999999999999999999999998754 45667899999999
Q ss_pred EEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC
Q 038802 98 CSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH 177 (532)
Q Consensus 98 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 177 (532)
|+.|-+| ..|++|+.|.++.+||+++++.+..|.+|.+.|.++.++|.+++.+++|+.|+..++||++.+.++++|.+|
T Consensus 150 cC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 150 CCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred EEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 9999875 478999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe-cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCe
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV-NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGK 255 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~ 255 (532)
...|+++.|.| +|.-|++|+.|+++++||+|.......+.. ....+|++++||..|++|.+|. |.++.+||.-.+ +
T Consensus 229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e 306 (343)
T KOG0286|consen 229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-E 306 (343)
T ss_pred ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-c
Confidence 99999999999 999999999999999999999777666653 3457899999999999999988 889999998776 7
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.+..+.+|...|+++..+|+ +.-+++|+.|..++||.
T Consensus 307 ~vg~L~GHeNRvScl~~s~D---------G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPD---------GMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEeeccCCeeEEEEECCC---------CcEEEecchhHheeecC
Confidence 88899999999999999999 67899999999999994
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-39 Score=298.66 Aligned_cols=283 Identities=19% Similarity=0.326 Sum_probs=262.3
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
.+..++..|.++.|+|..++++++-.+|.|.|||.++...++.+....-+|.+..|-+..+++++|+.|+.|+||+..++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 44568999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC-eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE-SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
+.+..|..|.+-|.+++.+| ...+++++|+|-+|++||.+.+ .+.+++.+|+..|.+++|+|.+.+.|++++-|++|+
T Consensus 88 ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 99999999999999999999 8889999999999999999865 678889999999999999999999999999999999
Q ss_pred EEEcccCCceeEEEecCCCcEEEEEEecCC--CEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCc
Q 038802 205 LWDVRVENSKSVMEVNHGKPIEDVMFLPSG--GLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGE 281 (532)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 281 (532)
+|.+.+..+..++. +|...|+|+++.+.| .+|++|+ |.+++|||..+. .|+.++++|...|..++|+|.
T Consensus 167 VWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~------ 238 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPE------ 238 (794)
T ss_pred EEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCC------
Confidence 99999877777777 999999999999855 5899998 779999999987 899999999999999999998
Q ss_pred cccccEEEEEecCCeEEEEECCCceEEEeeec-CCCeeEEEEecCCCEEEEEecCCcEEE
Q 038802 282 EAMQYRILSVALDGYMKVFDYGKMKVTHSMRF-PAPLMSVAFSPDCMTRVIGTSNGTIFA 340 (532)
Q Consensus 282 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~i 340 (532)
-..+++||.||+++||+..+.+...++.. -..++|++-.+.+..+++|..+|.|.+
T Consensus 239 ---lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 ---LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 67999999999999999999999888874 478999999998888998888877653
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=262.63 Aligned_cols=287 Identities=18% Similarity=0.294 Sum_probs=246.8
Q ss_pred CCCCCCCCCCCCcccccccCCCc---cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce--EEEEeeccCceeEE
Q 038802 24 KPKPRNLSQTPESKYWSSFKPHQ---IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE--KHSAISSFKDVVTC 98 (532)
Q Consensus 24 ~~~~~~~~~~~~~~~w~~~~~~~---~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~ 98 (532)
+....+.+.+.++|+|....... ++...+.|+.+...|+++.||+++. ..|++||+.++. ++.++.+|+..|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 34455667899999999877654 4666778999999999999998875 789999998754 58899999999999
Q ss_pred EEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-cCC
Q 038802 99 SSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGH 177 (532)
Q Consensus 99 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~ 177 (532)
+.|..+|+++++|+.||+++|||+....+.+.++ |.++|+++..+| +...|++|..+|.|++||+.+..+.+.+ ...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 9999999999999999999999999877666665 789999999999 8889999999999999999988766655 345
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE-----EecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM-----EVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
...|.++.+.| +|.+++.+..-|++++|++-+......+ ...|.+.+..+.+||++++|++++ |.+++||+..
T Consensus 167 ~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 167 DTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 57899999999 9999999999999999998764322211 226889999999999999999999 9999999998
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEe
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFS 323 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 323 (532)
+.-+....+.+|+..++.++||.+ +.||++|+.|+.+++||+..++.+..+. |..+..|++..
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~d---------g~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSAD---------GEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccC---------ccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 775667788999999999999999 7899999999999999999999888876 55566666643
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.6e-37 Score=289.88 Aligned_cols=285 Identities=26% Similarity=0.437 Sum_probs=258.1
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
..+.+|.++|++++|+|+++++++++.+|.+.+|+..+++....+..|...+.++.|+|+++++++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 125 ~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
++.+..+..|...+.++.|++ ++.++++++.||.|.+||+.+++....+..|...+.+++|+| ++.++++++.|+.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEE
Confidence 888888999999999999998 778888888899999999999998888889999999999999 788888888899999
Q ss_pred EEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccc
Q 038802 205 LWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEA 283 (532)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 283 (532)
+||+++.+....+. .|...+.++.|+|+++.+++++ ++.+++||+..+ ..+..+..|...+.++.|+++
T Consensus 161 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-------- 230 (289)
T cd00200 161 LWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPD-------- 230 (289)
T ss_pred EEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCC--------
Confidence 99998766555554 6778999999999998888887 999999999876 677778788999999999998
Q ss_pred cccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 284 MQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+.++++++.||.|++||+.+++....+. +...|.+++|+|++.++++++.||.|++|+
T Consensus 231 -~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 -GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5678888889999999999988887776 667899999999999999999999999996
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-37 Score=283.24 Aligned_cols=293 Identities=22% Similarity=0.386 Sum_probs=252.8
Q ss_pred ccCccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 46 QIPGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
++.||...|++++|-|..+ .+++|+.|+.|.+|+-...+...++..|...|+|+.|+|||..+|+.+.||+|.+||=.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4689999999999999988 688999999999999988899999999999999999999999999999999999999999
Q ss_pred CceEEEec---CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE-----------------------------
Q 038802 125 RTPLRRLK---SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL----------------------------- 172 (532)
Q Consensus 125 ~~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----------------------------- 172 (532)
++.+..+. +|++.|.+++|+| |+..++++|.|.+++|||+.+.+++.
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 99999998 8999999999999 99999999999999999997655433
Q ss_pred --------------eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeE----------------------
Q 038802 173 --------------DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSV---------------------- 216 (532)
Q Consensus 173 --------------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------- 216 (532)
.+.+|...|+++..+| ++.+|++|++||.|.-||..++..-..
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 3448999999999999 899999999999999999743211100
Q ss_pred ---------E-------------------------------------------------EecCCCcEEEEEEecCCCEEE
Q 038802 217 ---------M-------------------------------------------------EVNHGKPIEDVMFLPSGGLIA 238 (532)
Q Consensus 217 ---------~-------------------------------------------------~~~~~~~v~~i~~~~~~~~l~ 238 (532)
. .........+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 0 000111235788999999999
Q ss_pred EEc-CCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe-ee-cC
Q 038802 239 TAG-GNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS-MR-FP 314 (532)
Q Consensus 239 ~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~-~~ 314 (532)
.|+ |+.|++|.+.... ........|.++|+++++||+ +.+|+++...+.+.+||+.+.+.... +. |.
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd---------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt 530 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD---------GAYLAAGDASRKVVLYDVASREVKTNRWAFHT 530 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCC---------CcEEEEeccCCcEEEEEcccCceecceeeeee
Confidence 999 9999999998753 334456689999999999999 78999999999999999999877322 22 88
Q ss_pred CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 315 APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 315 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
..|.+++|+|+..++|+|+-|-.|.||+++...+.
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99999999999999999999999999999987655
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-38 Score=265.56 Aligned_cols=264 Identities=18% Similarity=0.297 Sum_probs=227.1
Q ss_pred CCCCCCCCCcccccccC--------CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEE
Q 038802 27 PRNLSQTPESKYWSSFK--------PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTC 98 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~--------~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~ 98 (532)
..+.+.+..+-.|+.-. ...+.||+..|..+..++||++.++++.|+.+++||+.+++..+.+.+|...|.+
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVls 110 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLS 110 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEE
Confidence 33445666666776432 2456899999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC-CCCCEEEEEeecCC-CcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 99 SSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS-HTRPVRFVKYPFLD-KLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 99 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
++|++|++.+++|+.|.+|.+|++........... +.+-|+|+.|+|.. ..+|+++|.|++|++||+++.+....+.+
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 99999999999999999999999875443333332 37899999999943 78999999999999999999999999999
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCee
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKM 256 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 256 (532)
|++.++.++++| ||.+.++|+.||.+.+||++.++. ...+++...|.+++|+|+...|+.+.+..|+|||+.++ .+
T Consensus 191 h~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~-~~ 266 (315)
T KOG0279|consen 191 HSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK-AV 266 (315)
T ss_pred ccccEEEEEECC-CCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch-hh
Confidence 999999999999 999999999999999999998544 66778999999999999998998888889999999876 44
Q ss_pred eEEcc---------CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 257 VYSME---------SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 257 ~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
+..+. .......+++|+++ +..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~d---------G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSAD---------GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCC---------CcEEEeeecCCcEEEEEee
Confidence 44432 12335678899998 6789999999999999864
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=257.65 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=239.1
Q ss_pred CCCccCccccCeeEEEEcCC-CCeEEEEEeCCeEEEEeCCC---ceEEEEe-eccCceeEEEEEccCCCEEEEEcCCCCE
Q 038802 43 KPHQIPGLVSSINSIVFSPT-TSHLFAATHSASLTLFSSQT---LEKHSAI-SSFKDVVTCSSFRPDGSLLAASDLSGLI 117 (532)
Q Consensus 43 ~~~~~~~h~~~V~~i~~sp~-~~~l~~~~~d~~v~i~~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i 117 (532)
..+.+.+|.+.|..++|+|. |..||+|+.|..|+||+... ..+...+ .+|+..|.+++|+|.|++||+|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 34567899999999999998 88999999999999999874 3333333 4689999999999999999999999999
Q ss_pred EEEECCCC--ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC---eEEEeccCCCCceEEEEEeCCCCC
Q 038802 118 QVFDVKSR--TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE---SVVLDLFGHKDYVRCGDCSPVNGD 192 (532)
Q Consensus 118 ~iwd~~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~ 192 (532)
.||.-..+ +++..+.+|...|.|++|++ ++.+|++++.|+.|-||.+..+ .+...+.+|...|..+.|+| ...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Ccc
Confidence 99987644 67889999999999999999 9999999999999999998743 57778899999999999999 889
Q ss_pred EEEEEeCCCeEEEEEcc-cCCceeEEEe-cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEE
Q 038802 193 MFVTGSYDHTVKLWDVR-VENSKSVMEV-NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTS 269 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 269 (532)
+|+++|+|.+|++|+-. ...-.....+ +|...|.+++|+|.|..|++++ |++++||-.... ....|...++.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYD 238 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEe
Confidence 99999999999999876 3333333333 6778999999999999999999 899999997643 11247788999
Q ss_pred EEEeccCCCCCccccccEEEEEecCCeEEEEECCCc------eEEEe--eecCCCeeEEEEecC-CCEEEEEecCCcEEE
Q 038802 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM------KVTHS--MRFPAPLMSVAFSPD-CMTRVIGTSNGTIFA 340 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~--~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i 340 (532)
+.|. + ..|++++.|+.|++|.-... +++.. ..|...|++++|.|. ...|++|+.||.|++
T Consensus 239 v~W~-~----------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 239 VPWD-N----------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred eeec-c----------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 9998 3 36999999999999976542 11111 127779999999995 688999999999999
Q ss_pred Eeec
Q 038802 341 GRRK 344 (532)
Q Consensus 341 w~~~ 344 (532)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9875
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=307.05 Aligned_cols=296 Identities=26% Similarity=0.424 Sum_probs=256.4
Q ss_pred CcccccccCCCccCc-cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce--EEEEeeccCceeEEEEEccCCCEEEEE
Q 038802 35 ESKYWSSFKPHQIPG-LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE--KHSAISSFKDVVTCSSFRPDGSLLAAS 111 (532)
Q Consensus 35 ~~~~w~~~~~~~~~~-h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g 111 (532)
....|.. ...+.+ |...|.++.|+|+|+++++++.++.+++|+..+.+ ....+.+|...|.+++|+|+++++++|
T Consensus 144 ~~~~~~~--~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 144 SSRVFSL--EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred cccccee--eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe
Confidence 3445544 333434 48899999999999999999999999999997777 777778999999999999999999999
Q ss_pred cCCCCEEEEEC-CCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCC
Q 038802 112 DLSGLIQVFDV-KSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN 190 (532)
Q Consensus 112 ~~dg~i~iwd~-~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 190 (532)
+.|++|+|||+ ..+..++++.+|...|++++|+| .++.+++|+.|++|++||++++++...+.+|.+.|++++|++ +
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d 299 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-D 299 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-C
Confidence 99999999999 55689999999999999999999 779999999999999999999999999999999999999999 9
Q ss_pred CCEEEEEeCCCeEEEEEcccCCce--eEEEecCCC-cEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcc
Q 038802 191 GDMFVTGSYDHTVKLWDVRVENSK--SVMEVNHGK-PIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKT 266 (532)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~-~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~ 266 (532)
++++++++.|+.|++||+.++... ......... ++++++|+|++.+++++. |+.+++||+... .......+|...
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNL 378 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCc
Confidence 999999999999999999987632 233322222 699999999999999999 789999999887 777888888775
Q ss_pred eE---EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-c-CCCeeEEEEecCCCEEEEEe--cCCcEE
Q 038802 267 VT---SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-F-PAPLMSVAFSPDCMTRVIGT--SNGTIF 339 (532)
Q Consensus 267 i~---~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~g~--~dg~i~ 339 (532)
+. +...++. +.++++|+.|+.|++||+.++..+..+. | ...+..++++|...++++++ .|+.++
T Consensus 379 ~~~~~~~~~~~~---------~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 379 VRCIFSPTLSTG---------GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred ceeEecccccCC---------CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 42 2233333 7899999999999999999988887776 5 68899999999999999998 788999
Q ss_pred EEeec
Q 038802 340 AGRRK 344 (532)
Q Consensus 340 iw~~~ 344 (532)
+|..+
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99864
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-37 Score=255.91 Aligned_cols=280 Identities=19% Similarity=0.259 Sum_probs=247.4
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
+.+.+|.++|.++.|+-||+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..+++|+.|..|.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC--CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCe
Q 038802 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG--ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 125 ~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
|+.++.+.+|.+.|+.+.|+. +...+++|+-|.++++||-++ .++++.+....+.|.++.+. +..+++||.||+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred CeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 999999999999999999998 889999999999999999875 46888888889999999985 478999999999
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEE--EEeccCCCC
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSV--CVGRVGNES 279 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ 279 (532)
++.||++.+....- ..+.||++++|+++++..++++ |+++++.|-.++ +++....+|...-..+ ++...
T Consensus 167 vRtydiR~G~l~sD---y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l~qs---- 238 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD---YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCLNQS---- 238 (307)
T ss_pred EEEEEeecceeehh---hcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeeeccc----
Confidence 99999998654332 3467999999999999988888 999999997777 8999999998865554 44443
Q ss_pred CccccccEEEEEecCCeEEEEECCCceEEEeeecCC-C-eeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA-P-LMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~-v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
...+++|+.||.|.+||+.+...+..+.+.+ . |.+++++|.-..+++++..+ +..|.
T Consensus 239 -----dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 239 -----DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred -----ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 6789999999999999999999999888654 3 68899999887777776554 44443
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=290.14 Aligned_cols=291 Identities=16% Similarity=0.250 Sum_probs=257.6
Q ss_pred ccCCCccCccccCeeEEEEcC-CCCeEEEEEeCCeEEEEeCCC-ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEE
Q 038802 41 SFKPHQIPGLVSSINSIVFSP-TTSHLFAATHSASLTLFSSQT-LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQ 118 (532)
Q Consensus 41 ~~~~~~~~~h~~~V~~i~~sp-~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 118 (532)
.-..+.+.||...|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..+.+++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 334466799999999999999 888999999999999999876 899999999999999999999999999999999999
Q ss_pred EEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 119 VFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
+||+++|+++..+. -...++|+.|.|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|.+ ++..+++++
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999999886 4567899999996669999999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC--eeeEEccCCCc--ceEEEEEe
Q 038802 199 YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG--KMVYSMESHNK--TVTSVCVG 273 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~~~~~ 273 (532)
.|+++++|+.+.+.........+.....++..+|++.++++-+ |+.|.+|.+.... .....+++|.. --..+.||
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 9999999999986665555555566677899999999999998 9999999975431 22345667754 45678899
Q ss_pred ccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCC-CEEEEEecCCcEEEEe
Q 038802 274 RVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDC-MTRVIGTSNGTIFAGR 342 (532)
Q Consensus 274 ~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~ 342 (532)
|+ +.+|++|+.||.+.+||.++-+.+..++ |.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 442 pD---------G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PD---------GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CC---------CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99 6899999999999999999999998888 77999999999964 6799999999999996
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.4e-37 Score=268.57 Aligned_cols=296 Identities=19% Similarity=0.284 Sum_probs=263.2
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
...+.+|.++|.+++.+|+.+++++|+.|..-.+|+..++.....+.+|++.|+|+.|+.||.+||+|+.+|.|.||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
++.....+...-..|.-+.|+| ....|+.|+.||.+.+|.+.++...+.+.+|+.++++-.|.| +|+.++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 9998888876777889999999 999999999999999999999888889999999999999999 89999999999999
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc--------CCCcceEEEEEec
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME--------SHNKTVTSVCVGR 274 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--------~~~~~i~~~~~~~ 274 (532)
++||+.++.+.............++.++..+..++.|+ ++.+++-+..++ +.+.... .+...+.++.+.|
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999998777766655566778889988888888888 888888887666 5554444 3555566666655
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.... -.+.++|+.||+|.|||+...++.+.+.|+.+|+.+.|-+ ..+|++++.+|.|+.||.+++...
T Consensus 294 ~ss~------lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 294 SSSK------LPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccc------cchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 4321 4678899999999999999999999999999999999999 789999999999999999998765
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-37 Score=300.07 Aligned_cols=249 Identities=23% Similarity=0.384 Sum_probs=226.4
Q ss_pred EeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc-------------------------------eEEEecCCCC
Q 038802 88 AISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-------------------------------PLRRLKSHTR 136 (532)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-------------------------------~~~~~~~h~~ 136 (532)
++......++|..|++|+.+||.|..|..|++|.+...+ ...++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 343445689999999999999999999999999886311 2345779999
Q ss_pred CEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeE
Q 038802 137 PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSV 216 (532)
Q Consensus 137 ~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 216 (532)
+|..+.|+| +.++|+++|.|++|++|.+.+..++..+.+|..+|.++.|+| .|.+|||+|.|++.++|......+..+
T Consensus 453 PVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 999999999 999999999999999999999999999999999999999999 899999999999999999887655555
Q ss_pred EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC
Q 038802 217 MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG 295 (532)
Q Consensus 217 ~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg 295 (532)
+. +|-..|.|+.|+|+..++++|+ |.+|++||..++ ..+..+.+|.++|.+++|||+ +.+|++|+.||
T Consensus 531 fa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~---------Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 531 FA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPC---------GRYLASGDEDG 599 (707)
T ss_pred hc-ccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCC---------CceEeecccCC
Confidence 54 8999999999999999999999 899999999988 789999999999999999998 78999999999
Q ss_pred eEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 296 YMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 296 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.|++||+.+++.+..+. |.+.|.++.||.||..||+|+.|..|++||+......
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999887776 8899999999999999999999999999999866443
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-36 Score=274.35 Aligned_cols=304 Identities=17% Similarity=0.264 Sum_probs=249.5
Q ss_pred CCCCCCCcccccc--cC-CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee---ccCceeEEEEEc
Q 038802 29 NLSQTPESKYWSS--FK-PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS---SFKDVVTCSSFR 102 (532)
Q Consensus 29 ~~~~~~~~~~w~~--~~-~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~ 102 (532)
..+.+..+.++.- |+ ...+..|..-|+|+.|+|||+.+++++.||.+.+||-.+++.+..+. +|++.|.+++|+
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 3455555555541 11 13457799999999999999999999999999999999999999997 899999999999
Q ss_pred cCCCEEEEEcCCCCEEEEECCCCceE-------------------------------------------EEecCCCCCEE
Q 038802 103 PDGSLLAASDLSGLIQVFDVKSRTPL-------------------------------------------RRLKSHTRPVR 139 (532)
Q Consensus 103 ~~~~~l~~g~~dg~i~iwd~~~~~~~-------------------------------------------~~~~~h~~~i~ 139 (532)
||++.+++++.|.+++|||+.+.+++ ..+.+|...|+
T Consensus 245 PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 245 PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 99999999999999999999765432 33458999999
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE-----------ecc---------------------------------
Q 038802 140 FVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL-----------DLF--------------------------------- 175 (532)
Q Consensus 140 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~--------------------------------- 175 (532)
++..+| ++.+|++|+.||.|.-||..++..-. .+.
T Consensus 325 aLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 325 ALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred EEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 999999 88999999999999999986543210 000
Q ss_pred -----------------------------CC--------CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce-eEE
Q 038802 176 -----------------------------GH--------KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK-SVM 217 (532)
Q Consensus 176 -----------------------------~~--------~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 217 (532)
.+ .-...+++++| +++.++.|+.||.+++|.+...... ...
T Consensus 404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred cCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceee
Confidence 00 01235778888 9999999999999999999875533 335
Q ss_pred EecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe
Q 038802 218 EVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 218 ~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
...|..+|+++++||++.+|+++. .+.+.+||..+..........|...|.+++|+|+ ..++++|+.|-.
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~---------n~~vATGSlDt~ 553 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN---------NKLVATGSLDTN 553 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC---------ceEEEeccccce
Confidence 568999999999999999999999 8999999998875555556679999999999999 789999999999
Q ss_pred EEEEECCCceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 297 MKVFDYGKMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 297 i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
|.||+++.....-.++ |...|+.+.|-.+ ..+++.+.|-.|++|++.
T Consensus 554 Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 554 VIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 9999998744333333 7778999999754 688999999999999864
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-35 Score=315.71 Aligned_cols=298 Identities=20% Similarity=0.271 Sum_probs=248.0
Q ss_pred CCcccccccC--------CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc----e----EEEEeeccCceeE
Q 038802 34 PESKYWSSFK--------PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL----E----KHSAISSFKDVVT 97 (532)
Q Consensus 34 ~~~~~w~~~~--------~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~----~----~~~~~~~~~~~v~ 97 (532)
+-.++|+... ...+..|.+.|++++|+|+++++++|+.|+.|+|||.... . ....+. +...+.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 3456666442 2335669999999999999999999999999999997531 1 122222 356799
Q ss_pred EEEEcc-CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 98 CSSFRP-DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 98 ~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
+++|++ ++.+|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||++++..+..+..
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 999987 5789999999999999999999999999999999999999976788999999999999999999988888775
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC--
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG-- 253 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~-- 253 (532)
+ ..+.++.|++.++.+|++|+.||.|++||+++.........+|...|.++.|. ++.++++++ |+.|++||++..
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 4 67899999765799999999999999999987553333344799999999997 667788877 999999999742
Q ss_pred ---CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee--------------cCCC
Q 038802 254 ---GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR--------------FPAP 316 (532)
Q Consensus 254 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~ 316 (532)
..++..+.+|...+..++|+++ +.++++|+.||.|++|+......+..+. +...
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~---------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVS---------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCC---------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 2567888999999999999998 6799999999999999987654433221 2346
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 317 LMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 317 v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
|.+++|+|++..|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999986
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=284.01 Aligned_cols=285 Identities=20% Similarity=0.332 Sum_probs=252.1
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeC-CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHS-ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
.-...+|..++|+..|.++|.|+.. |.+.||++++...+...++|...++|++++|||+++|+|+.||.|+|||..++-
T Consensus 304 Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 304 SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 3345689999999999999998864 799999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC-CCceEEEEEeCCCCCEEEEEeCCC-eEE
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGDCSPVNGDMFVTGSYDH-TVK 204 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~dg-~i~ 204 (532)
|..+|..|+..|+.+.|+. .++.++++|-||+|+.||+...+..+++... .-...|++..| .|.++++|+.|. .|.
T Consensus 384 C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIF 461 (893)
T ss_pred EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEE
Confidence 9999999999999999998 9999999999999999999999998888643 34567888888 899999999887 499
Q ss_pred EEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccc
Q 038802 205 LWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEA 283 (532)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 283 (532)
+|++.+++..-++. +|.+||.+++|+|.+..|++++ |.+|++||+-.....+.++ .+...+..++|.|+
T Consensus 462 vWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPd-------- 531 (893)
T KOG0291|consen 462 VWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPD-------- 531 (893)
T ss_pred EEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCC--------
Confidence 99999987766666 9999999999999999999999 9999999997664455555 46778999999999
Q ss_pred cccEEEEEecCCeEEEEECCCceEEEeee---------------------cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 284 MQYRILSVALDGYMKVFDYGKMKVTHSMR---------------------FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+..+++++.||.|.+||...+..+.++. .....+.+++++||.++++|+....|++|+
T Consensus 532 -G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 -GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred -CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 6789999999999999998765553332 123688999999999999999999999999
Q ss_pred ecC
Q 038802 343 RKK 345 (532)
Q Consensus 343 ~~~ 345 (532)
+.+
T Consensus 611 v~~ 613 (893)
T KOG0291|consen 611 VPE 613 (893)
T ss_pred Cch
Confidence 877
No 35
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=275.96 Aligned_cols=486 Identities=16% Similarity=0.210 Sum_probs=361.1
Q ss_pred CCCCCCcccccccCC---CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC
Q 038802 30 LSQTPESKYWSSFKP---HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS 106 (532)
Q Consensus 30 ~~~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 106 (532)
.+..+..++|+.-.. .++.++.+.|+++.-+|--..++.|..+|+|.|+|++.++.+.+++...+.|+.++|..||.
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence 367888999996655 45688999999999999988999999999999999999999999987679999999999986
Q ss_pred E-EEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe----EEEe-------
Q 038802 107 L-LAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES----VVLD------- 173 (532)
Q Consensus 107 ~-l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~------- 173 (532)
. +|+|+..|.+.+||++..+.+.... .|.+.|....|.| ....+++++.|+.+++|=.+++. .++.
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 5 5667777999999999888777666 7889999999998 88889999999888877432110 0000
Q ss_pred --------------------------------------------------------------------------------
Q 038802 174 -------------------------------------------------------------------------------- 173 (532)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (532)
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence
Q ss_pred ------------c---------cCCC------CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE--EecCCCc
Q 038802 174 ------------L---------FGHK------DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM--EVNHGKP 224 (532)
Q Consensus 174 ------------~---------~~~~------~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~ 224 (532)
+ ..+. ..+++++.++ .|++.+.|+..|+|-+|++.++-....+ ...|..+
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 0 0112 4567888888 8999999999999999999986555554 3479999
Q ss_pred EEEEEEecCCCEEEEEc-CCeEEEEEccCCC----------------------------------------eeeEEccCC
Q 038802 225 IEDVMFLPSGGLIATAG-GNSVKIWDLIGGG----------------------------------------KMVYSMESH 263 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~----------------------------------------~~~~~~~~~ 263 (532)
|+.++...-++.+++++ +|.+++||..... +.+..+.+|
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 99999999888898888 9999999986531 123456789
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC-CcEEEEe
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN-GTIFAGR 342 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g~i~iw~ 342 (532)
...|++++|||+ ++++++++.|++|++||+.++.++-.+..+.+++++.|+|+|.+||+...| .-|++|.
T Consensus 576 ~nritd~~FS~D---------grWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 576 GNRITDMTFSPD---------GRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ccceeeeEeCCC---------CcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999 799999999999999999999999999999999999999999999999999 5599996
Q ss_pred ecCcccc-----------------------------ccccc--------------------------cccccC-------
Q 038802 343 RKKKENV-----------------------------ESGIE--------------------------NFWSLG------- 360 (532)
Q Consensus 343 ~~~~~~~-----------------------------~~~~~--------------------------~~~~~~------- 360 (532)
-++.=.. ...+| ..|..-
T Consensus 647 NkslF~~vs~r~~~~~~~~~~v~lPst~~~~d~e~~~~tLE~~~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelIk 726 (910)
T KOG1539|consen 647 NKSLFKSVSTRAIPADYVPSWVMLPSTCDEDDDEDDEVTLESNDEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELIK 726 (910)
T ss_pred chhHheeccccccCcccccceeecCcccccccchhhhhhhhccccccccCChhHhChhhhhhccCcHHHhhhcccHHHHH
Confidence 5431000 00000 012111
Q ss_pred -cccccccccCCccceeeecCCCCCCCC-----CcEEEeCcccccchhHHHhhcccchHHHHHHhhCCCCChhHHHHHHH
Q 038802 361 -RVETQKPMLRPTYFRYFQRGQSDKPSE-----GDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLNGKNPENVVAVMEE 434 (532)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~k~~~~~~~l~~~~~~~al~~al~~~~~~~~~~~~~~ 434 (532)
.+++..++.++....+|.+........ .+.........+......+-.+-.+.++|..+...++-..++..|..
T Consensus 727 ~RnkPke~PK~pkkaPFFLp~~~s~g~v~e~~~~~~~~~~~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~L~~ 806 (910)
T KOG1539|consen 727 KRNKPKEPPKKPKKAPFFLPKVPSEGLVLETPAAEELNKEEDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFALLKN 806 (910)
T ss_pred hcCCCCCCCCccccCCcccccCCcccccccCcchhhhcchhhhhhhhccccccccchHHHHHhhccccccHHHHHHHHHh
Confidence 234444566666777777633211100 00111111112222222222233556666666666666667777776
Q ss_pred HHhhchHHHHhcCCC--hHhHH---HHHHHHHhccCCCCchHHHHHHHHHHHHhccccccccH---HHHHHHHHHHHHHH
Q 038802 435 LVARKKLMKCVSNLD--NEELG---LLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCD---ALKGHIRNLKRSVE 506 (532)
Q Consensus 435 l~~~~~l~~~~~~~~--~~~~~---~ll~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~---~l~~~~~~l~~~~~ 506 (532)
+.. .+++-.++.|. .+.++ .+++.+...+...+.+++++.++..+++.|+..+-.+| +|.+.++.+.+...
T Consensus 807 ~~p-saiD~eiRsL~d~~~~~~~~~~Fi~~l~~~l~~k~nFEL~qa~~slf~K~H~~~l~~~~~~~dl~e~l~~~~~v~~ 885 (910)
T KOG1539|consen 807 LSP-SAIDFEIRSLNDAGETIEEMVIFIKMLTQMLKTKRNFELVQAYMSLFLKSHGLVLWNHEGPEDLTEELQNWEEVQS 885 (910)
T ss_pred cCc-chheeehhhhhccCcchHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHH
Confidence 655 56776777773 23333 45667788889999999999999999999999996543 79999999999999
Q ss_pred HHHHHHHHHHH-hhhHHHHHHh
Q 038802 507 EEIRIQQSLQE-IQGIISPLLR 527 (532)
Q Consensus 507 ~~~~~~~~l~~-~~g~l~~~~~ 527 (532)
+|-+++++|.. ..|.+..+-+
T Consensus 886 e~wq~le~l~~~~mgvl~~l~n 907 (910)
T KOG1539|consen 886 EEWQRLEELFLYCMGVLAFLKN 907 (910)
T ss_pred HHHHHHHHHHHhhHhHHHHHhh
Confidence 99977777654 4787776543
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-37 Score=256.98 Aligned_cols=289 Identities=20% Similarity=0.282 Sum_probs=259.1
Q ss_pred CccCccccCeeEEEEcC---CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 45 HQIPGLVSSINSIVFSP---TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
.+-.||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+....+.+...-|+++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34479999999999986 777999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-EEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 122 VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 122 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
.-+|..+..+. |...|.+++|+. +.++|++|+.+..+++||++..+ +...+.+|++.|+.+.|.. .++.++++++|
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccC
Confidence 99999999887 999999999998 99999999999999999998654 5667889999999999998 88889999999
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
++|++||.+++.....+ ....+|+++.++++|+++.++..+.|.+||..+. .++...+. ...|.+..++|+
T Consensus 165 ~tVRLWD~rTgt~v~sL--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf-~~lKs~k~-P~nV~SASL~P~----- 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSL--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF-GLLKSYKM-PCNVESASLHPK----- 235 (334)
T ss_pred CceEEEEeccCcEEEEE--ecCCCCcceeeccCCCEEEEecCceeEEeccccc-cceeeccC-ccccccccccCC-----
Confidence 99999999996655554 4567899999999999999999999999999887 55655543 456889999998
Q ss_pred ccccccEEEEEecCCeEEEEECCCceEEEee--ecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHSM--RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
...+++|+.|+.++.||..+++.+..+ .|.++|.|+.|+|||...++|+.||+|++|....++..
T Consensus 236 ----k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 236 ----KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ----CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 678999999999999999999988876 38899999999999999999999999999999877543
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=269.08 Aligned_cols=288 Identities=16% Similarity=0.238 Sum_probs=245.0
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC---ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT---LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
+.+..|.+.|.-+.||++|+|||+++.|.+..||.+.. .+..+++.+|..+|..+.|+||.++|++|+.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 45688999999999999999999999999999997643 456788999999999999999999999999999999999
Q ss_pred CCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC-CCceEEEEEeCCCCCEEEEEeC
Q 038802 122 VKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 122 ~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
+.+|.....+. +|...+.+++|.| |+..+++|+.|+++..||++.. ......+- ...|.+++..+ +|.++++.+.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~ 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY-DGKYVLLVTV 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC-CCcEEEEEec
Confidence 99999888775 3467899999999 9999999999999999998743 34344332 24588999999 9999999999
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcc--eEEEEEeccC
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKT--VTSVCVGRVG 276 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~ 276 (532)
|..|++++..+..... ......+|++++.|.+++++++.- +..+.+||+... +.+..+.+|... +..-||....
T Consensus 375 d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred ccceeeechhhhhhhc--cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCC
Confidence 9999999988743332 234567999999999999888876 899999999965 788888888765 3344454332
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCC-CEEEEEecCCcEEEEeecCc
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDC-MTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~ 346 (532)
..++++||.|+.|+||+..+++++..+. |...|++++|+|.. .++|+|+.||+|+||.....
T Consensus 452 --------~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 452 --------DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred --------cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 5799999999999999999999999987 88899999999965 67899999999999987644
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=271.36 Aligned_cols=273 Identities=19% Similarity=0.365 Sum_probs=238.9
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
.....|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.| +.+.|++|+.|.+|++||+++++++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 356789999996 346999999999999999999999999999999999999 4569999999999999999999999
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe---EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES---VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
.++.+|...|..+.|+ +.+++++|.|.++.+||+.... +.+.+.+|...|+.+.|+ .++++++|.|.+|++
T Consensus 271 ~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV 344 (499)
T ss_pred hHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence 9999999999999995 5689999999999999998654 234567999999999995 469999999999999
Q ss_pred EEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcccc
Q 038802 206 WDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
|++.+.....++. +|...|-|+.+ .|+++++|+ |.+|++||+..+ .++..+++|..-|.++.|.
T Consensus 345 W~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRFd----------- 409 (499)
T KOG0281|consen 345 WSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFD----------- 409 (499)
T ss_pred Eeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheeec-----------
Confidence 9999977666665 89999999887 588999998 999999999988 8999999999999999997
Q ss_pred ccEEEEEecCCeEEEEECCCceEE----------EeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 285 QYRILSVALDGYMKVFDYGKMKVT----------HSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
...+++|+.||+|++||+..+.-- ....|.+.|..+.|. ...+++++.|..|.|||+..+..
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 458999999999999999774321 223477899999985 46899999999999999987643
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=263.10 Aligned_cols=251 Identities=26% Similarity=0.420 Sum_probs=229.2
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEE
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iw 163 (532)
+..+.+.+|.+.|.|+++.|.+.++++|+.|++|.|||+.+++...++.+|...|..+++++ ...++++++.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEE
Confidence 44556789999999999999999999999999999999999999999999999999999998 88899999999999999
Q ss_pred ECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C
Q 038802 164 DVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G 242 (532)
Q Consensus 164 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d 242 (532)
|++..+.++.+.+|-..|.|++.+| .-+.+++|+.|.++++||+++......+. +|..+|.++.+.|.+..+++|+ |
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEecCC
Confidence 9999999999999999999999999 88999999999999999999965555554 8999999999999888888888 9
Q ss_pred CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEE
Q 038802 243 NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVA 321 (532)
Q Consensus 243 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 321 (532)
++|++||++.+ +...++..|...+.+++.+|. ...+++++.| .|+-|++..+..++.+. |...|++++
T Consensus 299 ~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~---------e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 299 STVRLWDLRAG-KTMITLTHHKKSVRALCLHPK---------ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred ceEEEeeeccC-ceeEeeecccceeeEEecCCc---------hhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 99999999988 777888899999999999998 5678888877 59999999999888876 778899999
Q ss_pred EecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 322 FSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 322 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
...|| ++++|+.+|.+.+||.+++-..
T Consensus 368 ~nsD~-v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred eccCc-eEEEcCCceEEEEEecCcCccc
Confidence 98885 8889999999999999988554
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=287.77 Aligned_cols=285 Identities=22% Similarity=0.342 Sum_probs=253.5
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
.-+..|..++|+|..++++++-.+|.|.+||.+-+.++..+..|.++|..++|+|++.++++|+.|-.|++|+..+.+++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
.++.+|-+-|..+.|++ .-..++++|+|.+|+||+..+++++..+.+|...|.|..|+| ..+.++++|-|.+|++||+
T Consensus 87 ftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred hhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEee
Confidence 99999999999999998 888999999999999999999999999999999999999999 8899999999999999998
Q ss_pred ccCCc----------------------------eeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC-eeeE
Q 038802 209 RVENS----------------------------KSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG-KMVY 258 (532)
Q Consensus 209 ~~~~~----------------------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~-~~~~ 258 (532)
..-+. .....-+|...|+-++|+|.-.++++|+ |..|++|.+...+ =.+.
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 42110 0111227999999999999999999999 7899999987542 2456
Q ss_pred EccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeec-CCCeeEEEEecCCCEEEEEecCCc
Q 038802 259 SMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF-PAPLMSVAFSPDCMTRVIGTSNGT 337 (532)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~ 337 (532)
+..+|...|.++-|+|. .+.+++.|.|++|+|||+...+.+++++. .+..+.++-+|..+.+++|- |+-
T Consensus 245 tcrgH~nnVssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsG 314 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSG 314 (1202)
T ss_pred hhhcccCCcceEEecCc---------cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCc
Confidence 67899999999999998 68999999999999999999999999984 46889999999988777665 444
Q ss_pred EEEEeecC
Q 038802 338 IFAGRRKK 345 (532)
Q Consensus 338 i~iw~~~~ 345 (532)
+.+|.+..
T Consensus 315 m~VFkleR 322 (1202)
T KOG0292|consen 315 MIVFKLER 322 (1202)
T ss_pred eEEEEEcc
Confidence 55666553
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.6e-37 Score=272.76 Aligned_cols=261 Identities=20% Similarity=0.328 Sum_probs=229.0
Q ss_pred CCCCCCCcccccccC--C-CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccC-ceeEEEEEccC
Q 038802 29 NLSQTPESKYWSSFK--P-HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK-DVVTCSSFRPD 104 (532)
Q Consensus 29 ~~~~~~~~~~w~~~~--~-~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 104 (532)
..+.+++..+|+-.. - ..+..|.++|.++.|++++.++++|..+|.|++|+..- ..++.+..|. ..|++++|+|+
T Consensus 113 tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpn 191 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPN 191 (464)
T ss_pred eecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCC
Confidence 346889999998532 2 23478999999999999999999999999999999654 4455555555 89999999999
Q ss_pred CCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEE
Q 038802 105 GSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCG 184 (532)
Q Consensus 105 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 184 (532)
...+++++.||+|+|||....+....+.+|.-.|.+++|+| ...++++||.|..|++||.+++.++.++.+|+..|..+
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV 270 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence 99999999999999999998888888999999999999999 88899999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEccCCCeeeEEccC
Q 038802 185 DCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 185 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~ 262 (532)
.|+| ++++|+++|.|..++++|+++.+....+. +|...|+++.|+| ...++++++ ||.|..|.+.........-.+
T Consensus 271 ~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A 348 (464)
T KOG0284|consen 271 KFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA 348 (464)
T ss_pred EEcC-CCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence 9999 88999999999999999999755555544 7999999999999 555777777 999999998754344444568
Q ss_pred CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 263 HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 263 ~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
|...|++++|+|- +..|++|+.|.++++|.-
T Consensus 349 Hd~~iwsl~~hPl---------Ghil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 349 HDGEIWSLAYHPL---------GHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeeeecccc---------ceeEeecCCCcceeeecc
Confidence 9999999999999 679999999999999974
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-35 Score=247.67 Aligned_cols=280 Identities=20% Similarity=0.286 Sum_probs=236.7
Q ss_pred eEEEEcCC-CCeEEEEE-------eCCeEEEEeCCCceEEEEeec--cCceeEEEEEccC-CCEEEEEcCCCCEEEEECC
Q 038802 55 NSIVFSPT-TSHLFAAT-------HSASLTLFSSQTLEKHSAISS--FKDVVTCSSFRPD-GSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 55 ~~i~~sp~-~~~l~~~~-------~d~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~ 123 (532)
.++.|||- .++||+++ ..|++.|.++...+-+..... -.+.+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889984 23455443 368999999864444443332 3688999999995 4677788889999999974
Q ss_pred C-CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCe
Q 038802 124 S-RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 124 ~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
. ..++..++.|...|.++.|++..+..++++|.|++|++|+...++.+.++.+|...|....|+|..+++++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 468889999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
+++||++....... ...|...+.++.|+. +..++++++ |+.|++||+++...++..+.+|.-.|..+.|||..
T Consensus 172 l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~---- 246 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH---- 246 (311)
T ss_pred EEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch----
Confidence 99999998654444 347889999999998 566888888 99999999999888999999999999999999986
Q ss_pred ccccccEEEEEecCCeEEEEECCCc-eEEEeee-cCCCeeEEEEec-CCCEEEEEecCCcEEEEee
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKM-KVTHSMR-FPAPLMSVAFSP-DCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~ 343 (532)
...|++++.|-+++|||.... ..+.+.+ |..-+..++||+ ++.++|+.+.|+.++||+-
T Consensus 247 ----~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ----ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 679999999999999998853 3444454 667788899987 5678999999999999983
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=254.95 Aligned_cols=302 Identities=15% Similarity=0.190 Sum_probs=256.9
Q ss_pred CCCCCCCcccccccCCC---ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC
Q 038802 29 NLSQTPESKYWSSFKPH---QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG 105 (532)
Q Consensus 29 ~~~~~~~~~~w~~~~~~---~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 105 (532)
....+-..-+|+.-... ++.+|.++|+|+.|+.+|.+||+|..+|.|+||...++.....+...-+.+--+.|+|.+
T Consensus 81 TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a 160 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA 160 (399)
T ss_pred ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc
Confidence 33455556688876554 469999999999999999999999999999999999999888887666788889999999
Q ss_pred CEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC-CCCceEEE
Q 038802 106 SLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG-HKDYVRCG 184 (532)
Q Consensus 106 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i 184 (532)
..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.| +++.++++..||+|++||..++++++.+.. ......++
T Consensus 161 ~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 9999999999999999999888999999999999999999 899999999999999999999999988863 23456678
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE-------ecCCCcEEEEEEec---CCCEEEEEc-CCeEEEEEccCC
Q 038802 185 DCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME-------VNHGKPIEDVMFLP---SGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 185 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~i~~~~---~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
.++. .+..++.|+.++.+++-+..+++...... ..+...+.|+.+.| .=.+.|+|+ ||+|.|||+...
T Consensus 240 ~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 240 SLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 8887 88899999999998888876654433332 23445555555555 455778888 999999998764
Q ss_pred CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEE
Q 038802 254 GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIG 332 (532)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g 332 (532)
.++..-.|...|+.+.|-+. .+|++++.+|.|+.||.++|++..++. |..+|.+++++|++++++++
T Consensus 319 --~~R~~c~he~~V~~l~w~~t----------~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 319 --TLRHICEHEDGVTKLKWLNT----------DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred --hhheeccCCCceEEEEEcCc----------chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 34445578899999999874 589999999999999999999999997 88999999999999999999
Q ss_pred ecCCcEEEEeec
Q 038802 333 TSNGTIFAGRRK 344 (532)
Q Consensus 333 ~~dg~i~iw~~~ 344 (532)
+.|+..+||+..
T Consensus 387 s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNTALVFEVP 398 (399)
T ss_pred cCCCeEEEEecC
Confidence 999999999864
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=259.55 Aligned_cols=282 Identities=21% Similarity=0.340 Sum_probs=251.0
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe--------eccCceeEEEEEccCCCEEEEEcCCCCEEE
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI--------SSFKDVVTCSSFRPDGSLLAASDLSGLIQV 119 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 119 (532)
.|..+-+-|..|+|||+||++|+.||-|.+||..+|+..+.+ -.+.++|.|++|+.|..++|+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 456677889999999999999999999999999988765443 346789999999999999999999999999
Q ss_pred EECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 120 FDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 120 wd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
|.+.+|.+++.|. .|+..|+|+.|+. ++..+++++.|.++++.-+.+|+++..+.+|++.|+...|.+ +|..+++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaS 367 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISAS 367 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEec
Confidence 9999999999997 8999999999999 889999999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEEcccCCceeEEEe-cCCCcEEEEEEecCC-CEEEEEc-CCeEEEEEccCCCeeeEEccC---CCcceEEEEE
Q 038802 199 YDHTVKLWDVRVENSKSVMEV-NHGKPIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGGKMVYSMES---HNKTVTSVCV 272 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~ 272 (532)
.||+|++|+.++.++...+.. +...+|.++..-|.+ ..++.|. .+++.|.++.. +.+.++.. ..+...+.+.
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEe
Confidence 999999999999877776654 456789999888843 4566666 88999999854 56666653 3456778889
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+|. +.++++.+.|+.++.|.+.+|.+.+++. |...|..++-+|..+.+++-+.||.+++|.
T Consensus 446 Spk---------GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPK---------GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCC---------CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 998 6899999999999999999999999988 778899999999999999999999999996
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=249.06 Aligned_cols=251 Identities=23% Similarity=0.385 Sum_probs=220.1
Q ss_pred EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC-CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 86 HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK-SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
+..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|++.|..+.|.+ ++..++++|.|.+|+.||
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence 34567899999999999999999999999999999964 3455677889999999999999 999999999999999999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN 243 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~ 243 (532)
+++|+++..+++|.+.|+++.-+..+..++.+|+.||++++||+|+.... ..+....+++++.|...+..+.+|+ |+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~--~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI--KTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh--hccccceeEEEEEecccccceeeccccC
Confidence 99999999999999999999866545678889999999999999984443 3445577899999999999999999 99
Q ss_pred eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC----ceEEEeee-----cC
Q 038802 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK----MKVTHSMR-----FP 314 (532)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~-----~~ 314 (532)
.|++||++.+ .....+.+|..+|+.+..+++ +.++.+-+.|.++++||++. .+++..+. +.
T Consensus 197 ~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~---------gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 197 DIKVWDLRKN-DGLYTLSGHADTITGLSLSRY---------GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred ceeeeccccC-cceEEeecccCceeeEEeccC---------CCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 9999999987 889999999999999999999 67899999999999999876 34455554 23
Q ss_pred CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 315 APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 315 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.....++|+|++.++.+|+.|..+++||......+
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEE
Confidence 45678899999999999999999999999876543
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-35 Score=258.06 Aligned_cols=260 Identities=22% Similarity=0.357 Sum_probs=239.9
Q ss_pred CCCCCcccccccCCC---ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC-ceEEEEeeccCceeEEEEEccCCC
Q 038802 31 SQTPESKYWSSFKPH---QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT-LEKHSAISSFKDVVTCSSFRPDGS 106 (532)
Q Consensus 31 ~~~~~~~~w~~~~~~---~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 106 (532)
+.+..++.|+.++.. .+.||.++|..|+|+..|+++++++.|-.+.+||.++ .++++...+|...|.+++|-|.|.
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 568899999987764 4689999999999999999999999999999999987 677888899999999999999999
Q ss_pred EEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEE
Q 038802 107 LLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDC 186 (532)
Q Consensus 107 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 186 (532)
++++++.|.+|+.|++.++-++.++.+|..-|..+..+. |+.++++++.|.+|++|-+.++++...+..|..+|.|++|
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~w 285 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAW 285 (406)
T ss_pred eeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEe
Confidence 999999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred eCC--------------CCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc
Q 038802 187 SPV--------------NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 187 ~~~--------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
.|. .+.++.+++.|++|++||+.++.+...+. +|...|..++|+|.|++|+++. |+++++||++
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 873 12589999999999999999975555554 8999999999999999999999 7899999999
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
+. ++...+..|..-++++.|..+ ..++++|+-|..+++|..
T Consensus 365 ~~-~cmk~~~ah~hfvt~lDfh~~---------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NL-QCMKTLEAHEHFVTSLDFHKT---------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cc-eeeeccCCCcceeEEEecCCC---------CceEEeccccceeeeeec
Confidence 88 899999999999999999988 569999999999999964
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-35 Score=273.48 Aligned_cols=267 Identities=25% Similarity=0.359 Sum_probs=241.3
Q ss_pred EEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC
Q 038802 87 SAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166 (532)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 166 (532)
+++..+++.|.++.|+|...+++++-.+|.|.|||.++...++.+.-..-||.+..|-+ ..+.+++|++|..|++|+.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecc
Confidence 34556889999999999999999999999999999999999999998899999999998 89999999999999999999
Q ss_pred CCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEEEc-CCe
Q 038802 167 GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIATAG-GNS 244 (532)
Q Consensus 167 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~ 244 (532)
+++.+..+..|.+.|+|++.+| ...+++++|.|-+|++||....-......-+|..-|.+++|+| |.+.+++++ |++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 9999999999999999999999 8889999999999999999875433333448999999999999 667899999 999
Q ss_pred EEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEe
Q 038802 245 VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFS 323 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 323 (532)
|+||.+.+. .+..++++|...|+++++-+.|. ..++++|+.|.+++|||..+..|++++. |...|..+.|+
T Consensus 165 VKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 165 VKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred EEEEEcCCC-CCceeeeccccCcceEEeccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 999999877 88899999999999999998754 6799999999999999999999999998 88999999999
Q ss_pred cCCCEEEEEecCCcEEEEeecCcccc---ccccccccccCccc
Q 038802 324 PDCMTRVIGTSNGTIFAGRRKKKENV---ESGIENFWSLGRVE 363 (532)
Q Consensus 324 ~~~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~ 363 (532)
|.-..+++|+.||+++||+-.+-+.+ ...+++.|.+...+
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 99999999999999999998886433 55667788776433
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-33 Score=238.44 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=243.7
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
+..+.||..+++-+.|+.+|.+|++++.|....+|-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||++
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 45678999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-----CCeEEEEECC-------CCeEEEeccCCCCceEEEEEeCCCC
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-----DGIVKFWDVA-------GESVVLDLFGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~~ 191 (532)
+|+++..++ ...+|..+.|++ ++++++.+.+ .+.|.++|++ ..++...+..+.+.++.+-|.| .+
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~ 159 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LG 159 (327)
T ss_pred CCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cC
Confidence 999999987 577899999999 7877776654 3679999998 4566788888889999999999 99
Q ss_pred CEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEE
Q 038802 192 DMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSV 270 (532)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 270 (532)
.++++|..||.|..||++++.........|...|+.++++|+..++++++ |.+-++||..+. .++.++. -..+|++.
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTA 237 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEee-ecccccce
Confidence 99999999999999999997655555557899999999999999999999 999999999887 6777765 46789999
Q ss_pred EEeccCCCCCccccccEEEEEecCCe--EEEEECCCc------------eEEEeee-cCCCeeEEEEecCCCEEEEEecC
Q 038802 271 CVGRVGNESGEEAMQYRILSVALDGY--MKVFDYGKM------------KVTHSMR-FPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~------------~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
+++|. ...++.|+.... |.--+.+.+ +.+..++ |-+||++++|+|+|+..++|+.|
T Consensus 238 aisP~---------~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 238 AISPL---------LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED 308 (327)
T ss_pred ecccc---------cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC
Confidence 99998 344554443222 221122222 2222333 77899999999999999999999
Q ss_pred CcEEEEeecC
Q 038802 336 GTIFAGRRKK 345 (532)
Q Consensus 336 g~i~iw~~~~ 345 (532)
|.|++..+..
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 9999987764
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.8e-34 Score=251.47 Aligned_cols=280 Identities=18% Similarity=0.282 Sum_probs=240.5
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC---CEEEEEcCCCCEEEEECCC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG---SLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~ 124 (532)
.-|.+.|.++... +.++++|+.||.+++||.. |+...++.+|.++|.+++|.-.+ ..+++++.|.++++|..+.
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 4588888888887 5699999999999999965 89999999999999988876533 3599999999999999876
Q ss_pred Cce----EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC-------------------------CCeEEEecc
Q 038802 125 RTP----LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA-------------------------GESVVLDLF 175 (532)
Q Consensus 125 ~~~----~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------------------------~~~~~~~~~ 175 (532)
+.. +...+||...|.++...+ ++..+++||.|.+|.+|+.. ++.++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 643 344459999999999998 99999999999999999932 123566788
Q ss_pred CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC
Q 038802 176 GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG 254 (532)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~ 254 (532)
+|..+|.++.|++ ...+++++.|.+|+.||+.++...... ..+.++.++.++|...+|++|+ |..+++||.+++.
T Consensus 258 GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee--ecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 9999999999986 778999999999999999996655444 4577899999999999999999 8999999998653
Q ss_pred --eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCce-EEEeee-cCCCeeEEEEecCCCEEE
Q 038802 255 --KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMK-VTHSMR-FPAPLMSVAFSPDCMTRV 330 (532)
Q Consensus 255 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~ 330 (532)
....++.+|...|.++.|+|.. ..+|++++.|+++++||+++-+ ++..+. |...|.++.|+. +..++
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~--------~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~Iv 404 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTN--------EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIV 404 (423)
T ss_pred CceeEEeeecchhhhhheecCCCC--------ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEE
Confidence 4667888999999999999986 7899999999999999999866 666665 889999999975 56999
Q ss_pred EEecCCcEEEEeec
Q 038802 331 IGTSNGTIFAGRRK 344 (532)
Q Consensus 331 ~g~~dg~i~iw~~~ 344 (532)
+|+.|.+|+|+.-.
T Consensus 405 SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 SGGADNKLRIFKGS 418 (423)
T ss_pred eccCcceEEEeccc
Confidence 99999999998754
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=253.43 Aligned_cols=287 Identities=12% Similarity=0.186 Sum_probs=246.3
Q ss_pred CccCccccCeeEEEEcCCC-CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 45 HQIPGLVSSINSIVFSPTT-SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
..+.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 3468999999999999987 6899999999999999999999999999999999999986 578888889999999987
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
. .+.+++.+ .+.+..+.-+. .+..++|||. .|.|||.+...++..+.-..+.|.++.|+|.....|++|+.|+.|
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred C-Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 5 45666543 44566666655 6677888875 499999999999999988889999999999888899999999999
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
.+||+++..+...... ...-+.|+|+|.+-.+++++ |..++.||++....++....+|.+.|.++.|+|.
T Consensus 213 vLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt------- 283 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT------- 283 (433)
T ss_pred EEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-------
Confidence 9999999766655543 44567899999777777777 8899999999988899999999999999999999
Q ss_pred ccccEEEEEecCCeEEEEECCCceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 283 AMQYRILSVALDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
|.-+++||.|.+|+||..+.+.....+. --..|.|+.||-|.+++++|+.||+|++|.-+..++.
T Consensus 284 --G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 284 --GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred --cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 5679999999999999998876544443 3368999999999999999999999999998766554
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=258.48 Aligned_cols=316 Identities=20% Similarity=0.275 Sum_probs=262.3
Q ss_pred CCCCcccccccC---CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE
Q 038802 32 QTPESKYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 32 ~~~~~~~w~~~~---~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
.++.+++|+... ..++.||..+|+++.|+..|..+++|+.|+.|.+||+-...-...+.+|++.|+..-|..+.+++
T Consensus 85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~l 164 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFL 164 (888)
T ss_pred cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEE
Confidence 678899999763 34578999999999999999999999999999999998888888999999999999999888999
Q ss_pred EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEEC-----------------------
Q 038802 109 AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV----------------------- 165 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~----------------------- 165 (532)
++.+.|+.|++||+++..+..+.-.|.+.|+.+++.+ +.+++++.|+.+++|++
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 9999999999999998877666666666666666643 45556666666666655
Q ss_pred --------------------------------------------------------------------------------
Q 038802 166 -------------------------------------------------------------------------------- 165 (532)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (532)
T Consensus 242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ 321 (888)
T KOG0306|consen 242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA 321 (888)
T ss_pred ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 038802 166 -------------------------------------------------------------------------------- 165 (532)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (532)
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~ 401 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNR 401 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEc
Confidence
Q ss_pred CCCeEEEe----------------------------------------ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 166 AGESVVLD----------------------------------------LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 166 ~~~~~~~~----------------------------------------~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
.+.+++++ +.+|.+.|.+++.+| ++..+++||.|.+|++
T Consensus 402 ~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkf 480 (888)
T KOG0306|consen 402 DTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKF 480 (888)
T ss_pred cCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEE
Confidence 32222211 116888999999999 9999999999999999
Q ss_pred EEcccC-----CceeE------EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEe
Q 038802 206 WDVRVE-----NSKSV------MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVG 273 (532)
Q Consensus 206 wd~~~~-----~~~~~------~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 273 (532)
||..-. ..... ....-...|.|+.+||||++|+.+- |++++||-+.+. +...++.+|.-+|.|+.++
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEecc
Confidence 997531 11111 2234567899999999999999998 999999999988 8888899999999999999
Q ss_pred ccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc---
Q 038802 274 RVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV--- 349 (532)
Q Consensus 274 ~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--- 349 (532)
|+ +..++|||.|..|++|-++-|.|-.++- |+..|.++.|.|+...+++++.||.|+-||-.+-+..
T Consensus 560 ~D---------SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 560 PD---------SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred CC---------cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 99 7899999999999999999999987764 8999999999999999999999999999998776554
Q ss_pred ccccccccccCc
Q 038802 350 ESGIENFWSLGR 361 (532)
Q Consensus 350 ~~~~~~~~~~~~ 361 (532)
..+..+.|.+..
T Consensus 631 ~~H~~ev~cLav 642 (888)
T KOG0306|consen 631 DGHHSEVWCLAV 642 (888)
T ss_pred ccchheeeeeEE
Confidence 445555777653
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=252.74 Aligned_cols=258 Identities=21% Similarity=0.351 Sum_probs=224.8
Q ss_pred CCCCCCCCCcccccccC---CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc
Q 038802 27 PRNLSQTPESKYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP 103 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~---~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 103 (532)
-.+...+.++++|+.-. ...+.||+++|.|+.|. .+.+++|++|.+|+|||+++++++.++-+|.+.|..+.|+
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~- 286 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS- 286 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-
Confidence 34456788999999643 35579999999999996 4589999999999999999999999999999999999996
Q ss_pred CCCEEEEEcCCCCEEEEECCCCc---eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCc
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 180 (532)
+.++++++.|.+|.+||+.+.. +.+.+.||...|+.+.| +.++++++|.|.+|++|++.+++.+.++.+|...
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRG 362 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG 362 (499)
T ss_pred -CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhccccc
Confidence 4599999999999999998754 33456799999999999 5569999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCe----
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGK---- 255 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~---- 255 (532)
|-|+.+ .+.++++||.|.+|++||+..+....++. +|+.-|.++.|. .+.+++|+ ||+|++||+..+..
T Consensus 363 IAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 363 IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred ceehhc---cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence 988876 67999999999999999999988887777 899999999994 56788887 99999999976532
Q ss_pred ----eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE
Q 038802 256 ----MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT 308 (532)
Q Consensus 256 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (532)
++.++..|.+.|..+.|. ...+++++.|.+|-|||+.++...
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQFD-----------~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQFD-----------EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccchHHHhhhhccceeEEEeec-----------ceEEEeccCCCeEEEEEcCCCCcc
Confidence 455667799999999996 458999999999999999876554
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.5e-33 Score=277.07 Aligned_cols=299 Identities=20% Similarity=0.265 Sum_probs=250.3
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEE--eCCeEEEEeCCC------------ceEEEEeeccCceeEEEEEccCCCEEEEE
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAAT--HSASLTLFSSQT------------LEKHSAISSFKDVVTCSSFRPDGSLLAAS 111 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~--~d~~v~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 111 (532)
-+..+...|.+|+.+|+|..+++|+ .|+.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 3444556799999999999999999 899999998643 23455677899999999999999999999
Q ss_pred cCCCCEEEEECCC------------------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 038802 112 DLSGLIQVFDVKS------------------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173 (532)
Q Consensus 112 ~~dg~i~iwd~~~------------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 173 (532)
+.|+.|.||+... .+.+..+.+|.+.|..++|+| ++.+++++|.|++|.+||..+.+.+..
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeee
Confidence 9999999998762 136778889999999999999 999999999999999999999999999
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe-----cCCCcEEEEEEecCCCEEEEEc--C---C
Q 038802 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV-----NHGKPIEDVMFLPSGGLIATAG--G---N 243 (532)
Q Consensus 174 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~--d---~ 243 (532)
+.+|.+.|..+.|.| -|++||+-+.|++|++|++.+......+.. ....-+..+.|||||.+|++.. . .
T Consensus 167 l~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 999999999999999 999999999999999999766444443332 2344578899999999999986 2 3
Q ss_pred eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCC----CCccccc----cEEEEEecCCeEEEEECCCceEEEeee--c
Q 038802 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNE----SGEEAMQ----YRILSVALDGYMKVFDYGKMKVTHSMR--F 313 (532)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~--~ 313 (532)
++.|.+- ...+.-..+-+|.+++.++.|+|.--. .+..... ..+++|+.|++|.||.....+++.... +
T Consensus 246 ~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 246 TIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred eeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 7889885 444777888899999999999985211 0111111 278899999999999998888877766 6
Q ss_pred CCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 314 PAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 314 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
...|..++|+|||..|++++.||+|.+.++..++
T Consensus 325 ~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 325 NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6799999999999999999999999999998764
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.9e-33 Score=273.82 Aligned_cols=262 Identities=25% Similarity=0.437 Sum_probs=230.7
Q ss_pred CCCCCCcccccccC-----CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeC-CCceEEEEeeccCceeEEEEEcc
Q 038802 30 LSQTPESKYWSSFK-----PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSS-QTLEKHSAISSFKDVVTCSSFRP 103 (532)
Q Consensus 30 ~~~~~~~~~w~~~~-----~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~~~v~~~~~~~ 103 (532)
.+.+..+++|.... ...+.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|
T Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 35777888888732 3345899999999999999999999999999999999 66689999999999999999999
Q ss_pred CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe--EEEeccCCCCc-
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES--VVLDLFGHKDY- 180 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~- 180 (532)
+|+++++|+.|++|+|||+.+++++..+.+|.+.|++++|++ ++.+|++++.|+.|++||+.++. +...+.++...
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 999999999999999999999999999999999999999999 99999999999999999999998 56777666655
Q ss_pred -eEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCC--cEEEEEEecCCCEEEEEc-CCeEEEEEccCCCee
Q 038802 181 -VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGK--PIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKM 256 (532)
Q Consensus 181 -v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~ 256 (532)
++++.|+| ++.++++++.|+.+++||++.............. .+.+...++.+.++++++ |+.|++||+.++ ..
T Consensus 336 ~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~ 413 (456)
T KOG0266|consen 336 PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GI 413 (456)
T ss_pred ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-ch
Confidence 99999999 9999999999999999999987666666533332 444556678999999999 999999999886 78
Q ss_pred eEEccCC-CcceEEEEEeccCCCCCccccccEEEEEe--cCCeEEEEECC
Q 038802 257 VYSMESH-NKTVTSVCVGRVGNESGEEAMQYRILSVA--LDGYMKVFDYG 303 (532)
Q Consensus 257 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 303 (532)
+..+.+| ...+..+.+++. ..++++++ .|+.+++|...
T Consensus 414 ~~~l~~h~~~~~~~~~~~~~---------~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 LQRLEGHSKAAVSDLSSHPT---------ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhhcCCCCCceeccccCCC---------cCeeeecCcCCCceEEEecCC
Confidence 8889999 888999999998 67888888 78999999754
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=230.68 Aligned_cols=261 Identities=20% Similarity=0.302 Sum_probs=220.2
Q ss_pred CCCCCCCCCCcccccccCCCc-------cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCC--CceEEEEeeccCcee
Q 038802 26 KPRNLSQTPESKYWSSFKPHQ-------IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQ--TLEKHSAISSFKDVV 96 (532)
Q Consensus 26 ~~~~~~~~~~~~~w~~~~~~~-------~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~--~~~~~~~~~~~~~~v 96 (532)
...+-+.+..+++|..-.... -.+|...|.+++|+|.|++|++++.|.++.||.-. ..+++.++.+|...|
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEV 108 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEV 108 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccce
Confidence 344557788899998653211 15799999999999999999999999999999754 357888999999999
Q ss_pred EEEEEccCCCEEEEEcCCCCEEEEECCCC---ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC---CCeE
Q 038802 97 TCSSFRPDGSLLAASDLSGLIQVFDVKSR---TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA---GESV 170 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~ 170 (532)
.|++|+++|.+||+|+.|..|-||.+..+ .+...++.|...|..+.|+| ...+|+++|.|.+|++|+-. .-.+
T Consensus 109 K~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c 187 (312)
T KOG0645|consen 109 KCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWEC 187 (312)
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeE
Confidence 99999999999999999999999999743 57788999999999999999 89999999999999999876 3468
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEE
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWD 249 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd 249 (532)
++++.+|...|.+++|++ .|..|++++.|++++||-..+ .....|..++..+.|. + ..|++++ |+.|++|.
T Consensus 188 ~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 188 VQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFK 259 (312)
T ss_pred EEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEE
Confidence 899999999999999999 899999999999999998653 3334578899999998 4 4666666 99999998
Q ss_pred ccCCC-e-----eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 250 LIGGG-K-----MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 250 ~~~~~-~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
-.... . ....-..|...|+++.|.|.. ..+|++|+.||.|++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~--------~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV--------SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccceEEEcCCC--------CCceeecCCCceEEEEEec
Confidence 65321 1 122345688999999999954 6799999999999999864
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=269.72 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=250.2
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEE-eeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSA-ISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
+...+.+..|+ ..++++++.+++|++||..++..+.. +.+|.+.|.+++|..-+.++++|+.|.++++||..++++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56788888898 44799999999999999999999888 9999999999999887889999999999999999999999
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
..+.+|.+.|.++.. .+..+++|+.|.+|++|++.++..+..+.+|.++|+++.++ +.++++|++|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 999999999999987 56778899999999999999999999999999999999985 799999999999999999
Q ss_pred ccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccE
Q 038802 209 RVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
.+++....+. +|...|.++.+.+. ..+++|+ |+.|++||+++..+++.++.+|..-+..+.+. +.+
T Consensus 359 ~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-----------~~~ 425 (537)
T KOG0274|consen 359 RTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-----------DNF 425 (537)
T ss_pred hhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-----------cce
Confidence 9887777777 69999999988765 7888888 99999999987657899999999988777765 468
Q ss_pred EEEEecCCeEEEEECCCceEEEeeecC--CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSMRFP--APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
|++++.||.|++||..++++++.+... +.|.++++. ...+++++.||.+.+||+.++...
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 999999999999999999999999863 788888776 468999999999999999988655
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=228.44 Aligned_cols=249 Identities=16% Similarity=0.275 Sum_probs=218.6
Q ss_pred EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 85 KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
....+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++.+. ++..+++|+.|..|.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEE
Confidence 3456788899999999999999999999999999999999999999999999999999988 888899999999999999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe-cCCCcEEEEEEecCCCEEEEEc-C
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV-NHGKPIEDVMFLPSGGLIATAG-G 242 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~-d 242 (532)
+++|+..+.+.+|...|+.+.|+. +...+++|+.|.++++||.++....++..+ .....|.++..+ +..+++|+ |
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 999999999999999999999998 899999999999999999998766655544 456788888875 56788888 9
Q ss_pred CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCC--CeeE
Q 038802 243 NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPA--PLMS 319 (532)
Q Consensus 243 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~--~v~~ 319 (532)
|+++.||++.+ ...... ...+|++++|+++ ++..++++.|+++++.|-.+++++..++ |.. .-..
T Consensus 165 GtvRtydiR~G-~l~sDy--~g~pit~vs~s~d---------~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 165 GTVRTYDIRKG-TLSSDY--FGHPITSVSFSKD---------GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred CcEEEEEeecc-eeehhh--cCCcceeEEecCC---------CCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 99999999987 544433 3457999999999 6789999999999999999999998887 443 2345
Q ss_pred EEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 320 VAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 320 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
++++.....+++|+.||.|++||+-.+...
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceee
Confidence 677777889999999999999999877554
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=253.34 Aligned_cols=280 Identities=16% Similarity=0.243 Sum_probs=242.2
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce--EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE--KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
.+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 357899999999999998899999999999999987655 677888888999999999999999999999999999999
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
+.+...++.+|++.|+++.|.. ....+++|+.|.+|+.||+....+..++.. ...+..|.++ +..+++|-.|++|
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~---~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS---ISDVISGHFDKKV 324 (459)
T ss_pred chhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-cccccceEec---ceeeeecccccce
Confidence 9999999999999999999987 555599999999999999999888877653 3445566654 4678999999999
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCC----CcceEEEEEeccCCC
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESH----NKTVTSVCVGRVGNE 278 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~ 278 (532)
++||+++...... .+..+.|+++..+++|..+.+++ |+++.+.|+++. .....+... ....+.++|||+
T Consensus 325 RfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd--- 398 (459)
T KOG0288|consen 325 RFWDIRSADKTRS--VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPD--- 398 (459)
T ss_pred EEEeccCCceeeE--eecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCC---
Confidence 9999998554444 45566999999999999998888 999999999987 444444321 234789999999
Q ss_pred CCccccccEEEEEecCCeEEEEECCCceEEEeeec--C-CCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF--P-APLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+.|+++||.||.|+||++.++++...... . ..|++++|+|.|..+++++.++.+.+|.
T Consensus 399 ------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 ------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 78999999999999999999999888872 2 2699999999999999999999999994
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=270.30 Aligned_cols=249 Identities=22% Similarity=0.365 Sum_probs=208.9
Q ss_pred EEEEee-ccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC--------------------------------C------
Q 038802 85 KHSAIS-SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS--------------------------------R------ 125 (532)
Q Consensus 85 ~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--------------------------------~------ 125 (532)
..+.+. .|.+.|+++.|++||+|||+|+.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 8999999999999999999999999999998744 0
Q ss_pred ----------------------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 126 ----------------------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 126 ----------------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
++++.+.||.+.|.++.|+ .+++|+++|.|.+|++|++...+++..|. |.+.|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1245567999999999999 57789999999999999999999998886 9999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc-
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME- 261 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~- 261 (532)
++|+|.|+++|++|+-||.|+||++.. ...........-|++++|.|+|+..+.|+ +|.+++|+.... +......
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeE
Confidence 999999999999999999999999986 33333335568999999999999999999 999999998765 4433322
Q ss_pred -CC------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeec---CCCeeEEEEecCCCEEEE
Q 038802 262 -SH------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF---PAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 262 -~~------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~ 331 (532)
.| .+.|+++.|.|.. ...+++.+.|..|+|||.++..+++.++. ...-....|+.||++|++
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~--------~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGD--------PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eeccCccccCceeeeeEecCCC--------CCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 11 2279999999875 45788889999999999998888888872 234567889999999999
Q ss_pred EecCCcEEEEeecCcc
Q 038802 332 GTSNGTIFAGRRKKKE 347 (532)
Q Consensus 332 g~~dg~i~iw~~~~~~ 347 (532)
|+.|..|++|+.....
T Consensus 564 ~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSFN 579 (712)
T ss_pred eecCceEEEEeCCCCc
Confidence 9999999999985543
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-31 Score=228.65 Aligned_cols=281 Identities=20% Similarity=0.211 Sum_probs=238.5
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC--CCCEEEEECCCC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL--SGLIQVFDVKSR 125 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~iwd~~~~ 125 (532)
....+.|+++.|+++|.++++++.|..+++||..+++..+++..+.-.+..++|......++.++. |.+|+..++.+.
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 345779999999999999999999999999999999999999999889999999887777777766 889999999999
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
+.++.+.||...|..++.+| -++.+++++.|++|++||++..++...+.....+ .++|.| .|-++|++.....|++
T Consensus 91 kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp-~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP-EGLIFALANGSELIKL 166 (311)
T ss_pred ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC-CCcEEEEecCCCeEEE
Confidence 99999999999999999999 6789999999999999999988877666544444 478999 9999999988889999
Q ss_pred EEcccCCceeEEEe----cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcce---EEEEEeccCC
Q 038802 206 WDVRVENSKSVMEV----NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTV---TSVCVGRVGN 277 (532)
Q Consensus 206 wd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~~~~~ 277 (532)
||+|.-...+...+ +.....+.+.|+|+|++++.+. .+.+.+.|.-++ ....++..+...- ...+|+|+
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPd-- 243 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPD-- 243 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCC--
Confidence 99997643332222 3456789999999999888887 789999998887 6777776665433 67889999
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceEEEeeec--CCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF--PAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
+.++++|+.||+|.+|+++++..+..+.. .+++.++.|+|.-..++++ +..+.+|-..
T Consensus 244 -------s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 244 -------SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred -------CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 68999999999999999999999988874 6799999999976666655 5578888654
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-33 Score=232.62 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=218.0
Q ss_pred cccCeeEEEEcCCC-CeEEEEEeCCeEEEEeCCC-ceEEEEeeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCCCc
Q 038802 50 LVSSINSIVFSPTT-SHLFAATHSASLTLFSSQT-LEKHSAISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 50 h~~~V~~i~~sp~~-~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
-.+.+..++|+++. +.+++++.||++++||... ..++..++.|...|.++.|++ ++..+++++.||+|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 46788999999975 4788899999999999643 457788899999999999998 66778889999999999999999
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 206 (532)
.+.++.+|...|....|+|..++.++++|.|+++++||++.......+..|...+.|+.|+..+.+.++||+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999999999999999999999999987655556889999999999999899999999999999999
Q ss_pred EcccCCceeEEEecCCCcEEEEEEecC-CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcccc
Q 038802 207 DVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 207 d~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
|+++.+.......+|+-.|..+.|||. ..+|++++ |-+++|||.......+.+..-|..-+..+.|++-.
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~-------- 290 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFD-------- 290 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccccc--------
Confidence 999876555445689999999999995 45888888 99999999987767888888899999999999874
Q ss_pred ccEEEEEecCCeEEEEEC
Q 038802 285 QYRILSVALDGYMKVFDY 302 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~ 302 (532)
+.++++++.|+.++||+.
T Consensus 291 ~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Cceeeecccccceeeecc
Confidence 789999999999999984
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=224.71 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=242.4
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEE--eeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSA--ISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd 121 (532)
..+.+|...|.+++|+.+|..+++|+.|+.+.+|+++..+.... ..+|.+.|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987654433 467899999999988 667999999999999999
Q ss_pred CCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 122 VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 122 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
+.++++........+.+ -+.|+| ++.+++.++.|..|.+.|.++.+...... ....+.-++|+. ++++|+..+..|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-SNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-CCCEEEEecCCc
Confidence 99999999887655555 467999 99999999999999999999888776654 455677888885 777777777789
Q ss_pred eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 202 TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
+|.|......++...+. .|.....||.|+|+|+++|+|+ |..+.+||+... .+...+..+.-+|..+.|+.+
T Consensus 170 ~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~d----- 242 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHD----- 242 (313)
T ss_pred eEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEEEEeccC-----
Confidence 99999887755555554 7999999999999999999999 899999999877 788889999999999999999
Q ss_pred ccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
+++|+++|.|..|-|=++++|..+..+++.++...++|+|....||-++.|
T Consensus 243 ----g~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 243 ----GRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ----cceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 789999999999999999999999999999999999999999999888765
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=250.04 Aligned_cols=292 Identities=15% Similarity=0.248 Sum_probs=238.3
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce----EEEEe-eccCceeEEEEEccCCCEEEEEcCCCCEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE----KHSAI-SSFKDVVTCSSFRPDGSLLAASDLSGLIQV 119 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 119 (532)
.++.+|...|.++++.|.|..+++|+.|..|++||+.... ..+.+ ......|.++.|++.|..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 3468899999999999999999999999999999986532 22222 223468999999999999998888889999
Q ss_pred EECCCCceEE------------EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-EEEec-----cCCCCce
Q 038802 120 FDVKSRTPLR------------RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-VVLDL-----FGHKDYV 181 (532)
Q Consensus 120 wd~~~~~~~~------------~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~-----~~~~~~v 181 (532)
+|-....... ..++|...++|.+|+|.+...+++++.||++++||+...+ ....+ .+..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9965433322 2358999999999999888999999999999999997653 22222 2345678
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCcee--EEEecCCC--cEEEEEEecCCCEEEEEc-CCeEEEEEccCCCee
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS--VMEVNHGK--PIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKM 256 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~--~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~ 256 (532)
++++|++ ++..+|+|..||.|.+||.+...... .....|.. .|+|+.||++|++|++-+ |+++++||++...++
T Consensus 321 tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 9999999 99999999999999999986543333 33336666 899999999999999998 999999999998888
Q ss_pred eEEccCC--CcceEEEEEeccCCCCCccccccEEEEEec------CCeEEEEECCCceEEEeeec-CCCeeEEEEecCCC
Q 038802 257 VYSMESH--NKTVTSVCVGRVGNESGEEAMQYRILSVAL------DGYMKVFDYGKMKVTHSMRF-PAPLMSVAFSPDCM 327 (532)
Q Consensus 257 ~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~ 327 (532)
+....+- ..+-+.++|||+ ..++++|.. .|.+.+||..+...+..+.. ...|..+.|+|.=+
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd---------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPD---------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred hhhhcCCCccCCCCccccCCC---------ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 7776553 335678999999 678888865 57899999999999988884 46788999999999
Q ss_pred EEEEEecCCcEEEEeecCc
Q 038802 328 TRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 328 ~l~~g~~dg~i~iw~~~~~ 346 (532)
.|++|+.||.+++|=-.+.
T Consensus 471 Qi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred heeeecCCCceEEEECccc
Confidence 9999999999999855544
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-31 Score=258.30 Aligned_cols=302 Identities=20% Similarity=0.278 Sum_probs=243.6
Q ss_pred CCCCcccccccCC---CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE
Q 038802 32 QTPESKYWSSFKP---HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 32 ~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
.++.+++|+.-.. +.+.+|.++|..++|+|+++.+++|+.|-.|++|+..+.+++.++.+|-+.|..+.|++.-.+|
T Consensus 29 HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI 108 (1202)
T ss_pred cCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceE
Confidence 6788999996554 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-------------------
Q 038802 109 AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES------------------- 169 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------- 169 (532)
+++|.|.+|+||+..+++++..+.||..-|.|..|+| ....++++|-|.+|++||+..-+
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 9999999999999999999999999999999999999 88999999999999999985210
Q ss_pred ----------EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc-eeEEEecCCCcEEEEEEecCCCEEE
Q 038802 170 ----------VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS-KSVMEVNHGKPIEDVMFLPSGGLIA 238 (532)
Q Consensus 170 ----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~ 238 (532)
..+.+.+|...|+-++|+| .-.++++|+.|..|++|.+...+. ..-...+|...|.++-|+|...+++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 1234578999999999999 888999999999999999875322 1122337999999999999999999
Q ss_pred EEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC---------------
Q 038802 239 TAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY--------------- 302 (532)
Q Consensus 239 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~--------------- 302 (532)
+.+ |++|+|||+... ..+.++.......+.++.+|.. +++ +++.|+-+.+|.+
T Consensus 267 SnsEDksirVwDm~kR-t~v~tfrrendRFW~laahP~l---------NLf-AAgHDsGm~VFkleRErpa~~v~~n~Lf 335 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPEL---------NLF-AAGHDSGMIVFKLERERPAYAVNGNGLF 335 (1202)
T ss_pred ecCCCccEEEEecccc-cceeeeeccCCeEEEEEecCCc---------cee-eeecCCceEEEEEcccCceEEEcCCEEE
Confidence 999 999999999876 7788887777788999999874 333 3334444444444
Q ss_pred ------------CCceE--EEeeecC----CCeeEEEEecCCCEEEEE-e-cCCcEEEEeecCc
Q 038802 303 ------------GKMKV--THSMRFP----APLMSVAFSPDCMTRVIG-T-SNGTIFAGRRKKK 346 (532)
Q Consensus 303 ------------~~~~~--~~~~~~~----~~v~~~~~s~~~~~l~~g-~-~dg~i~iw~~~~~ 346 (532)
.+.+- +..+++. .++.+++++|....+..+ . ..|..-++.+.+.
T Consensus 336 Yvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 336 YVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred EEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 33221 2222333 478889999976544433 3 3345555555443
No 65
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-30 Score=256.74 Aligned_cols=265 Identities=17% Similarity=0.217 Sum_probs=209.8
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEE-------------EEeeccCceeEEEEEcc-CCCEEEEEcCCC
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKH-------------SAISSFKDVVTCSSFRP-DGSLLAASDLSG 115 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg 115 (532)
|...|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4556666677777666777776666666765433222 23678999999999999 889999999999
Q ss_pred CEEEEECCCC-------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 116 LIQVFDVKSR-------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 116 ~i~iwd~~~~-------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
+|++||+.++ ..+..+.+|...|.+++|+|..+++|++|+.|++|++||+++++.+..+.+|.+.|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999764 356788899999999999994457999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCc-EEEEEEecCCCEEEEEc-----CCeEEEEEccCCCeeeEEccC
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKP-IEDVMFLPSGGLIATAG-----GNSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~-----d~~i~iwd~~~~~~~~~~~~~ 262 (532)
++.+|++|+.|++|++||+++++...... .|... +..+.|.+++..+++++ |+.|++||+++...+......
T Consensus 179 -dG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 179 -DGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred -CCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 99999999999999999999876554443 45543 45678888877776653 579999999876555555443
Q ss_pred CC-cceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECCCceEEEeee--cCCCeeEEEEecC
Q 038802 263 HN-KTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPD 325 (532)
Q Consensus 263 ~~-~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~ 325 (532)
+. ..+....|+++ +.++++++ .||.|++||+.+++.+.... ...++.+++|.|.
T Consensus 257 d~~~~~~~~~~d~d---------~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDED---------TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCC---------CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 33 34555677887 56777776 59999999999988876654 4467888999885
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9e-32 Score=231.86 Aligned_cols=288 Identities=19% Similarity=0.285 Sum_probs=238.8
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC------------------ceEEEEeeccCceeEEEEEccCCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT------------------LEKHSAISSFKDVVTCSSFRPDGS 106 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~ 106 (532)
..+..|.+++.+.+|+|||.++++|+.|..|+|.|++. ...++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44678999999999999999999999999999999851 135778888999999999999999
Q ss_pred EEEEEcCCCCEEEEECCCCceEEEec--CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec---cCCCCce
Q 038802 107 LLAASDLSGLIQVFDVKSRTPLRRLK--SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL---FGHKDYV 181 (532)
Q Consensus 107 ~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v 181 (532)
.|++|+.|++|++||+......+.++ ....+|.++.|+| .+.+++.|.+..++++||+++.++...- ..|++.|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999997543332222 3567899999999 9999999999999999999998876554 4699999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC-CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEE
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG-KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 259 (532)
+++.+++ .+++.++||.||.|++||--+++++..+...|+ ..|.+..|..+|+++++++ |..+++|.+.++ +++..
T Consensus 265 ~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~ 342 (430)
T KOG0640|consen 265 TQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKE 342 (430)
T ss_pred eEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEE
Confidence 9999999 999999999999999999887777777666664 5789999999999999999 999999999988 77766
Q ss_pred ccCCC-----cceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECCCceEEE--eeecCCCeeEEEEecCCCEEEE
Q 038802 260 MESHN-----KTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYGKMKVTH--SMRFPAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 260 ~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 331 (532)
..+-. .--+...|... ..+++.-. ..+.+.-||.++...+. .+.|.+++..+.-||.+.-+++
T Consensus 343 YtGAg~tgrq~~rtqAvFNht---------EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHT---------EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred EecCCcccchhhhhhhhhcCc---------cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 65431 11233344443 44554443 45789999999866554 4459999999999999999999
Q ss_pred EecCCcEEEEeec
Q 038802 332 GTSNGTIFAGRRK 344 (532)
Q Consensus 332 g~~dg~i~iw~~~ 344 (532)
++.|-.+++|-..
T Consensus 414 csdD~raRFWyrr 426 (430)
T KOG0640|consen 414 CSDDFRARFWYRR 426 (430)
T ss_pred ecccceeeeeeec
Confidence 9999999999765
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-31 Score=252.35 Aligned_cols=275 Identities=25% Similarity=0.369 Sum_probs=235.1
Q ss_pred eEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC-
Q 038802 55 NSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS- 133 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 133 (532)
+-++|+.. +.|++| .+..|++|+..++........+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWss~-n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSSA-NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcccC-CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 44678843 455555 457899999999887666666689999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe-ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD-LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 212 (532)
|...|.+++|+ ...+.+|+.|+.|..+|++..+.... +.+|...|..+.|++ ++.++|+|+.|+.+.|||.....
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcc
Confidence 99999999994 67899999999999999998776555 788999999999999 99999999999999999996644
Q ss_pred ceeEEEecCCCcEEEEEEec-CCCEEEEEc---CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEE
Q 038802 213 SKSVMEVNHGKPIEDVMFLP-SGGLIATAG---GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRI 288 (532)
Q Consensus 213 ~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 288 (532)
....+ ..|...|.+++|+| ...+||+|+ |+.|++||..++ ..+..+. -...|.++.|++.. ..++
T Consensus 335 p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~--------kEi~ 403 (484)
T KOG0305|consen 335 PKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKY--------KELL 403 (484)
T ss_pred ccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCC--------CEEE
Confidence 44444 48999999999999 566888886 789999999877 6666654 46789999999985 3344
Q ss_pred EEE-ecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 289 LSV-ALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 289 ~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
.+. ..++.|.||++.+.+.+..+. |...|..++++|||..+++|+.|.++++|++-..
T Consensus 404 sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 404 STHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 443 346789999999988888776 8899999999999999999999999999999875
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-30 Score=211.76 Aligned_cols=290 Identities=19% Similarity=0.288 Sum_probs=236.5
Q ss_pred CCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC------c---------eEEEEeeccCceeEEEEEccCCCE
Q 038802 43 KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT------L---------EKHSAISSFKDVVTCSSFRPDGSL 107 (532)
Q Consensus 43 ~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~------~---------~~~~~~~~~~~~v~~~~~~~~~~~ 107 (532)
....+......|.+++|+|.|.+.++|+...+++|-.... + -..+.-+.|.+.|+|.+|+|+|.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 3334455677899999999999999999999998864321 1 112233568899999999999999
Q ss_pred EEEEcCCCCEEEEECCCCce-----EEEecCCCCCEEEEEeec---CCCcEEEEEe-CCCeEEEEECCCCeEEEeccCCC
Q 038802 108 LAASDLSGLIQVFDVKSRTP-----LRRLKSHTRPVRFVKYPF---LDKLHLVSGG-DDGIVKFWDVAGESVVLDLFGHK 178 (532)
Q Consensus 108 l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~i~~~~~~~---~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~ 178 (532)
|++|++|.+|++.-+....+ -..+..|.+.|..++|.. ..+.+|++++ .|..|++-|...++..+.+.+|+
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987654332 245678999999999953 1345666654 46778888999999999999999
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec------CCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc
Q 038802 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN------HGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 179 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
+.|.++- +. ++-++++|+.|.+|++||++-.....+.... ..+.|.++++.|.|++|+++. |....+||++
T Consensus 184 ghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 184 GHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred ccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 9997763 33 7899999999999999999986555544321 235799999999999999999 8899999999
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC-----ceEEEeeecCCCeeEEEEecCC
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK-----MKVTHSMRFPAPLMSVAFSPDC 326 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~~ 326 (532)
.+ +.+..+..|...|.++.|+|. ..++++++.|..|++-|+.. ...+..-+|...+..+.|+|..
T Consensus 262 g~-r~iq~f~phsadir~vrfsp~---------a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 262 GG-RMIQRFHPHSADIRCVRFSPG---------AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred CC-ceeeeeCCCccceeEEEeCCC---------ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc
Confidence 87 999999999999999999998 68999999999999999864 2233444588889999999999
Q ss_pred CEEEEEecCCcEEEEeec
Q 038802 327 MTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 327 ~~l~~g~~dg~i~iw~~~ 344 (532)
-.+++.+.|.++.+|-++
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 899999999999999865
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=241.90 Aligned_cols=272 Identities=22% Similarity=0.311 Sum_probs=234.1
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEE----E-------------e-eccCceeEEEEEccCCCEE
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS----A-------------I-SSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~~l 108 (532)
+..|.-+|.|++++|++++.++++.+++|.=|++.+++... . - ..|...+.+++.++||+||
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 46789999999999999999999999999999987766331 1 1 2677899999999999999
Q ss_pred EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 109 AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
|+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-. ....+++++.|++|++|+++....+.++.+|.+.|.++....
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 9999999999999999999999999999999999987 788899999999999999999999999999999999999887
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc-CC---
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME-SH--- 263 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~--- 263 (532)
.+..+.+|+.|+++++|++.. ....+..++.+.+.|++|-.+. .+++|+ +|.|.+|++... +++.+.. +|
T Consensus 297 -reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~ 371 (479)
T KOG0299|consen 297 -RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVI 371 (479)
T ss_pred -ccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeeccc-CceeEeecccccc
Confidence 778888888999999999954 4555556888999999998654 555666 899999999876 4444432 22
Q ss_pred --------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc----eEEEeeecCCCeeEEEEecCCCEEEE
Q 038802 264 --------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM----KVTHSMRFPAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 264 --------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~ 331 (532)
...|++++..|. .+++++|+.+|.|++|-+.++ .++..+...+-|++++|+++|+.+++
T Consensus 372 ~~~~~~~~~~Witsla~i~~---------sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPG---------SDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred CCccccccccceeeeEeccc---------CceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEE
Confidence 237899999988 789999999999999998875 56677778899999999999998877
Q ss_pred Ee
Q 038802 332 GT 333 (532)
Q Consensus 332 g~ 333 (532)
|.
T Consensus 443 gi 444 (479)
T KOG0299|consen 443 GI 444 (479)
T ss_pred ec
Confidence 73
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-30 Score=278.28 Aligned_cols=262 Identities=22% Similarity=0.280 Sum_probs=219.9
Q ss_pred CCeEEEEeCCCceEEEEe-----eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC----c----eEEEecCCCCCE
Q 038802 72 SASLTLFSSQTLEKHSAI-----SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR----T----PLRRLKSHTRPV 138 (532)
Q Consensus 72 d~~v~i~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~----~~~~~~~h~~~i 138 (532)
+|.+++|+..+......+ ..|.+.|.+++|+|+|+++|+|+.||.|+||+..+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 577888888766554433 348899999999999999999999999999997532 1 222333 45679
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME 218 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (532)
.+++|++..+.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~- 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI- 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-
Confidence 9999988668899999999999999999999999999999999999999767899999999999999999886554443
Q ss_pred ecCCCcEEEEEEe-cCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe
Q 038802 219 VNHGKPIEDVMFL-PSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 219 ~~~~~~v~~i~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
.+...+.++.|+ +++.++++|+ |+.|++||+++.......+.+|...|.++.|. + +.++++++.|+.
T Consensus 615 -~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~---------~~~lvs~s~D~~ 683 (793)
T PLN00181 615 -KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D---------SSTLVSSSTDNT 683 (793)
T ss_pred -ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---------CCEEEEEECCCE
Confidence 345689999995 4789999998 99999999987655677788999999999997 3 468999999999
Q ss_pred EEEEECCC------ceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 297 MKVFDYGK------MKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 297 i~iwd~~~------~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
|++||+.. ...+..+. |...+.+++|+|++.+|++|+.||.|++|+....
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999974 34566665 7778999999999999999999999999997654
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.9e-30 Score=244.71 Aligned_cols=258 Identities=27% Similarity=0.470 Sum_probs=230.9
Q ss_pred CCCCCcccccccCC---CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCE
Q 038802 31 SQTPESKYWSSFKP---HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSL 107 (532)
Q Consensus 31 ~~~~~~~~w~~~~~---~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 107 (532)
..++.+.+|+.... ..+.+|...+.++.|+|+++++++++.+|.|++||..+++....+..|...+.++.|++++++
T Consensus 28 ~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 28 SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 35788899986543 346789999999999999999999999999999999988888888899999999999999999
Q ss_pred EEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEe
Q 038802 108 LAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCS 187 (532)
Q Consensus 108 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 187 (532)
+++++.+|.|.+||+.+++....+..|...+.++.|+| ++.++++++.|+.|++||+++++....+..|...+.++.|+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 99998899999999998888888989999999999999 78888888889999999999998888888999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcc
Q 038802 188 PVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKT 266 (532)
Q Consensus 188 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~ 266 (532)
| +++.+++++.|+.|++||++.+....... .|...+.++.|+|++.++++++ ++.+++||+.++ .....+..|...
T Consensus 187 ~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~ 263 (289)
T cd00200 187 P-DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNS 263 (289)
T ss_pred C-CcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCc
Confidence 9 88889999999999999998754444332 6778999999999999999999 999999999876 777888899999
Q ss_pred eEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 267 VTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 267 i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
+.+++|+++ +.++++++.||.+++|+
T Consensus 264 i~~~~~~~~---------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 264 VTSLAWSPD---------GKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEECCC---------CCEEEEecCCCeEEecC
Confidence 999999998 57899999999999996
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=257.91 Aligned_cols=248 Identities=18% Similarity=0.284 Sum_probs=208.2
Q ss_pred CCccC-ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC----------------------------------------
Q 038802 44 PHQIP-GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT---------------------------------------- 82 (532)
Q Consensus 44 ~~~~~-~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~---------------------------------------- 82 (532)
.+.+. .|.++|.++.||+||+|||+|+.|+.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34566 8999999999999999999999999999997643
Q ss_pred --------------------ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEE
Q 038802 83 --------------------LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVK 142 (532)
Q Consensus 83 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 142 (532)
.+++..+.+|.+.|..+.|+.++ +|++++.|.+|++|++....+++.|. |..-|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 01233456899999999999654 89999999999999999999999997 999999999
Q ss_pred eecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec--
Q 038802 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-- 220 (532)
Q Consensus 143 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 220 (532)
|+|.|.+++++|+-||.|+||++...+.+.-... .+.|++++|.| +|+..+.|+.+|.+++|+....+......+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999999999999999999999998877665554 48899999999 8999999999999999999875554444332
Q ss_pred -----CCCcEEEEEEecCCC--EEEEEcCCeEEEEEccCCCeeeEEccCCCcc--eEEEEEeccCCCCCccccccEEEEE
Q 038802 221 -----HGKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKT--VTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 221 -----~~~~v~~i~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
....|+.+.|.|... +|++..|..|+|||.++. .++..++++... -....|+.+ +.+|+++
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~D---------gk~IVs~ 564 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSD---------GKHIVSA 564 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccC---------CCEEEEe
Confidence 123799999998544 788777999999999776 677777765442 346677777 7899999
Q ss_pred ecCCeEEEEECCCc
Q 038802 292 ALDGYMKVFDYGKM 305 (532)
Q Consensus 292 ~~dg~i~iwd~~~~ 305 (532)
+.|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998553
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=5e-32 Score=246.97 Aligned_cols=263 Identities=19% Similarity=0.334 Sum_probs=227.5
Q ss_pred CCCCCCCCCCcccccccC----CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEE
Q 038802 26 KPRNLSQTPESKYWSSFK----PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSF 101 (532)
Q Consensus 26 ~~~~~~~~~~~~~w~~~~----~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 101 (532)
+..+..++..+++|+.+. ..++.||..+|.+++|+++|..+++++.|+.+++||+++|++...+.. ...++|+.|
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf 307 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKF 307 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeec
Confidence 344567899999999876 356799999999999999999999999999999999999999988865 568899999
Q ss_pred ccCC-CEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc-CCCC
Q 038802 102 RPDG-SLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF-GHKD 179 (532)
Q Consensus 102 ~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~ 179 (532)
+||+ +.+++|+.|+.|+.||+.+++.++.+..|-++|..+.|-+ ++..+++.++|+++++|+.+.+-.+..+. .+.-
T Consensus 308 ~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h 386 (503)
T KOG0282|consen 308 HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH 386 (503)
T ss_pred CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhc
Confidence 9988 8899999999999999999999999999999999999999 99999999999999999998876655442 2334
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc---eeEEEecC--CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC
Q 038802 180 YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS---KSVMEVNH--GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 180 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~--~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
...|+..+| ++++++.-+.|..|.+|.+...-. ...+. +| .+.-..+.|||||.+|++|+ +|.+.+||.++.
T Consensus 387 smP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 387 TMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred cCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhc-ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 456899999 999999999999999998653211 11111 33 33456789999999999999 999999999987
Q ss_pred CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 254 GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
+.+..+..|...+..+.|+|.. ...+++++.||.|++||
T Consensus 465 -kl~~~lkah~~~ci~v~wHP~e--------~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -KLVSKLKAHDQPCIGVDWHPVE--------PSKVATCGWDGLIKIWD 503 (503)
T ss_pred -hhhhccccCCcceEEEEecCCC--------cceeEecccCceeEecC
Confidence 8899999999999999999986 67899999999999996
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.9e-30 Score=223.19 Aligned_cols=269 Identities=18% Similarity=0.239 Sum_probs=217.6
Q ss_pred cccCeeEEEEcC-CCCeEEEEEeCCeEEEEeCCC-ceE-EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 50 LVSSINSIVFSP-TTSHLFAATHSASLTLFSSQT-LEK-HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 50 h~~~V~~i~~sp-~~~~l~~~~~d~~v~i~~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
..+.|.+++||| ...++++++.||+|++|+++. +.. -+....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 467899999999 445666899999999999976 232 24456789999999999999999999999999999999984
Q ss_pred eEEEecCCCCCEEEEEeecCCCc--EEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKL--HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
+..+..|.++|.++.|-+ ... .|++||.|++|+.||++...++.++. -.+.+.++++- ..+++.+..+..|.
T Consensus 106 -~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPMAVVATAERHIA 179 (347)
T ss_pred -eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---CceeEEEecCCcEE
Confidence 666778999999999976 444 89999999999999999999888876 45677777763 46888899999999
Q ss_pred EEEcccCCce-eEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC-CeeeEEccCCC---------cceEEEEE
Q 038802 205 LWDVRVENSK-SVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG-GKMVYSMESHN---------KTVTSVCV 272 (532)
Q Consensus 205 iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~---------~~i~~~~~ 272 (532)
+|+++++... ........-.+.|++..++....+.|+ +|.+.|..+... .+.-.+++.|. -.|++++|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9999764322 222334566789999999888778888 999999888763 12334455554 25788999
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEe
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGT 333 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~ 333 (532)
+|. ...|+++|.||++.+||-.....+.+.+ ++.+|++.+|+.+|.+++-+.
T Consensus 260 hP~---------hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 260 HPV---------HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecc---------cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 997 6789999999999999988777666655 889999999999999887653
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.8e-30 Score=224.58 Aligned_cols=289 Identities=18% Similarity=0.243 Sum_probs=246.7
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEEC--
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDV-- 122 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-- 122 (532)
..+.||.+.|..++-....+.+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++.|++..||..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 346899999999999988889999999999999999999999999999999999999999999999999999999962
Q ss_pred ----CC----------------------------------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 123 ----KS----------------------------------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 123 ----~~----------------------------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
.. ..++..+.+|.+.|.+..|.. .++.+++++.|.+..+||
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWD 300 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeee
Confidence 10 013566789999999999998 899999999999999999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN 243 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~ 243 (532)
++++..+..+.+|....+.++-+| ...++++++.|.+.++||++..-.......+|...|+++.|..+.+. ++++ |.
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-VSgSDDr 378 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-VSGSDDR 378 (481)
T ss_pred eccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-eecCCCc
Confidence 999999999999999999999999 89999999999999999999533333333489999999999977654 5555 88
Q ss_pred eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEee-----ecCCCee
Q 038802 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM-----RFPAPLM 318 (532)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~v~ 318 (532)
+|++||+++...++.++.. .++++.++++.. ...++.--.+..|++||++..++...- .|...|.
T Consensus 379 TvKvWdLrNMRsplATIRt-dS~~NRvavs~g---------~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRT-DSPANRVAVSKG---------HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVT 448 (481)
T ss_pred eEEEeeeccccCcceeeec-CCccceeEeecC---------CceEEeccCCceEEEEecCCCccccCCcccccccceeee
Confidence 9999999998778887753 567899999876 567777778889999999876554322 2667899
Q ss_pred EEEEecCC--CEEEEEecCCcEEEEeecCc
Q 038802 319 SVAFSPDC--MTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 319 ~~~~s~~~--~~l~~g~~dg~i~iw~~~~~ 346 (532)
|++|..+. .-|++++-|..+.-|++...
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeccccCcccccccccccceeeeeEeccc
Confidence 99998653 45889999999999998764
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.1e-30 Score=220.91 Aligned_cols=266 Identities=19% Similarity=0.272 Sum_probs=223.8
Q ss_pred EEEEEeCCeEEEEeCCC------------ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC
Q 038802 66 LFAATHSASLTLFSSQT------------LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 66 l~~~~~d~~v~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 133 (532)
+++|+....|.=+++.. ..+...+..|.+++++++. ++.++|+|+.|-+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 66777777766665432 2235566889999999998 688999999999999999999998999999
Q ss_pred CCCCEEEEEeecCCC--cEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC
Q 038802 134 HTRPVRFVKYPFLDK--LHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211 (532)
Q Consensus 134 h~~~i~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~ 211 (532)
|.+.|+++.|.+ .. .+|++|++||.|.+|+.....++..+++|.+.|+.++++| .+++.++.+.|+.+++||+-.+
T Consensus 82 HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence 999999999987 44 3899999999999999999999999999999999999999 9999999999999999999887
Q ss_pred CceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEE
Q 038802 212 NSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 212 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
+......+.+.. +.+.|+|.|.+++.+..+.|-+|.+.+. .....+.. ...+.++.|.. +..+++|
T Consensus 160 r~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A-~v~~~i~~-~~r~l~~~~l~----------~~~L~vG 225 (362)
T KOG0294|consen 160 RVAFVLNLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNA-SVFREIEN-PKRILCATFLD----------GSELLVG 225 (362)
T ss_pred ccceeeccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccH-hHhhhhhc-cccceeeeecC----------CceEEEe
Confidence 776666655443 3499999999999999889999998765 44444433 24566666644 5689999
Q ss_pred ecCCeEEEEECCCceEEEeee-cCCCeeEEEE--ecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 292 ALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAF--SPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~--s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+.|+.|.+||.++..+...+. |+..|-++.+ .|++.+|+++++||.|+|||++.+.+.
T Consensus 226 ~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 226 GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 999999999999988888776 8899999984 467899999999999999999987443
No 77
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6e-29 Score=246.40 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=192.6
Q ss_pred EEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccC-CCEEEEEcCCCCEEEEECCCCc--------eEEEecCCCCCEE
Q 038802 69 ATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPD-GSLLAASDLSGLIQVFDVKSRT--------PLRRLKSHTRPVR 139 (532)
Q Consensus 69 ~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~i~ 139 (532)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 456788999998887888889999999999999996 7899999999999999997542 3456788999999
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe
Q 038802 140 FVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219 (532)
Q Consensus 140 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 219 (532)
+++|+|.....+++++.|++|++||+++++....+. |...|.+++|+| ++.+|++++.|+.|++||++++.....+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~- 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH- 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe-
Confidence 999999433456799999999999999998777665 667899999999 99999999999999999999876554443
Q ss_pred cCCCcEEE-----EEEecCCCEEEEEc-CC----eEEEEEccCCCeeeEEccC--CCcceEEEEEeccCCCCCccccccE
Q 038802 220 NHGKPIED-----VMFLPSGGLIATAG-GN----SVKIWDLIGGGKMVYSMES--HNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 220 ~~~~~v~~-----i~~~~~~~~l~~~~-d~----~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
.|.+.+.+ ..|++++.++++++ ++ .|++||+++...++..... +.+.+... +.++. +.+
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~-~D~~t--------g~l 277 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH-YDEST--------GLI 277 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe-eeCCC--------CCE
Confidence 56655433 33457888888876 53 7999999965566655432 22222222 22332 678
Q ss_pred EEEEecCCeEEEEECCCceE--EEeeecCCCeeEEEEecCC
Q 038802 288 ILSVALDGYMKVFDYGKMKV--THSMRFPAPLMSVAFSPDC 326 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~ 326 (532)
+++|+.|+.|++|++..+.. +..+.+..++.+++|.|..
T Consensus 278 ~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 99999999999999987643 3344466789999999974
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=229.32 Aligned_cols=279 Identities=18% Similarity=0.253 Sum_probs=243.3
Q ss_pred cCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEe
Q 038802 52 SSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRL 131 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 131 (532)
..|+++...|..+.+++|+.|..+.++|..+.+.+..+.+|...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 47888999988789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC--CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 038802 132 KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG--HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209 (532)
Q Consensus 132 ~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 209 (532)
..|..+|+.+..+| .+.||++++.||+..+.|++++..+..... ..-.+++.+|+| ||.+|.+|+.||.+++||+.
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcC
Confidence 89999999999999 999999999999999999999988776543 334589999999 99999999999999999999
Q ss_pred cCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccC-CCcceEEEEEeccCCCCCccccccE
Q 038802 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMES-HNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
++.....+. +|.++|.+++|+.+|.+|+++. |+.|++||++.. +...++.. ....+.+++|.+. +.+
T Consensus 378 s~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~S---------Gt~ 446 (506)
T KOG0289|consen 378 SQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQS---------GTY 446 (506)
T ss_pred CccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCC---------CCe
Confidence 876544444 7999999999999999999999 778999999977 44444433 2347899999988 678
Q ss_pred EEEEecCCeEEEEECC--CceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 288 ILSVALDGYMKVFDYG--KMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
++.++.|=+|++++-. ++..+..+. |.+..+++.|....+++++++.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999888777777733 567776665 6678999999999999999999999888764
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.3e-30 Score=227.47 Aligned_cols=262 Identities=24% Similarity=0.370 Sum_probs=221.5
Q ss_pred CCCCCCCCcccccccCC--CccCccccCeeEEEEcCCCC---eEEEEEeCCeEEEEeCCCceEE----EEeeccCceeEE
Q 038802 28 RNLSQTPESKYWSSFKP--HQIPGLVSSINSIVFSPTTS---HLFAATHSASLTLFSSQTLEKH----SAISSFKDVVTC 98 (532)
Q Consensus 28 ~~~~~~~~~~~w~~~~~--~~~~~h~~~V~~i~~sp~~~---~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~v~~ 98 (532)
.+.+.++..++|+.-.. .++.||.++|.+++|..... .+++++.|.++++|..+.+... ..-.+|...|-+
T Consensus 119 ltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s 198 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS 198 (423)
T ss_pred EEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence 34478899999997654 45689999999888855444 5999999999999988765432 233589999999
Q ss_pred EEEccCCCEEEEEcCCCCEEEEECCC-------------------------CceEEEecCCCCCEEEEEeecCCCcEEEE
Q 038802 99 SSFRPDGSLLAASDLSGLIQVFDVKS-------------------------RTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153 (532)
Q Consensus 99 ~~~~~~~~~l~~g~~dg~i~iwd~~~-------------------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 153 (532)
+...++|..+++|+.|.+|.||+..+ +.++..+.+|..+|.++.|++ ...+++
T Consensus 199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS 276 (423)
T KOG0313|consen 199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYS 276 (423)
T ss_pred EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEe
Confidence 99999999999999999999999321 235667889999999999985 778999
Q ss_pred EeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce--eEEEecCCCcEEEEEEe
Q 038802 154 GGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK--SVMEVNHGKPIEDVMFL 231 (532)
Q Consensus 154 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~ 231 (532)
+|.|.+|+.||+.++....++.+ ...++|++++| ..++|++|+.|..+++||.|++... .....+|..-|.++.|+
T Consensus 277 ~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 99999999999999999888774 56789999999 9999999999999999999986543 33345899999999999
Q ss_pred cCCC-EEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 232 PSGG-LIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 232 ~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
|... .|++++ |+++++||+++...++..+.+|...|.++.|... ..+++||.|.+|+|+.-.
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~----------~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG----------GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC----------ceEEeccCcceEEEeccc
Confidence 9655 566667 9999999999986699999999999999999864 589999999999998643
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-29 Score=215.03 Aligned_cols=254 Identities=20% Similarity=0.319 Sum_probs=214.3
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC--CCeEE
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD--DGIVK 161 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~--dg~i~ 161 (532)
+..+.+....+.|+++.|+++|.++++++.|.++++||..+++.++++..+...+..++|.. ..+.++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 34445555678999999999999999999999999999999999999999999999999987 5566666665 88999
Q ss_pred EEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc
Q 038802 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 162 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 241 (532)
..++.+.+.++.+.||...|++++.+| -++.+++++.|++|++||++..++...+... .-..++|+|.|-++|++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcEEEEec
Confidence 999999999999999999999999999 6799999999999999999986666555532 223578999999999998
Q ss_pred C-CeEEEEEccCCC-eeeEEcc---CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeec-CC
Q 038802 242 G-NSVKIWDLIGGG-KMVYSME---SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF-PA 315 (532)
Q Consensus 242 d-~~i~iwd~~~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~ 315 (532)
+ +.|++||++... .+..++. +.....+.+.|+|+ |++++.+...+.+++.|.-+|....++.. +.
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d---------GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD---------GKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC---------CCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 4 599999998652 3333333 34667899999999 67899999999999999999999988872 21
Q ss_pred ---CeeEEEEecCCCEEEEEecCCcEEEEeecCcccccc
Q 038802 316 ---PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVES 351 (532)
Q Consensus 316 ---~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~ 351 (532)
--.+.+|+||++++++|+.||+|.+|+..+++++..
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 125788999999999999999999999998877643
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-30 Score=243.67 Aligned_cols=257 Identities=19% Similarity=0.305 Sum_probs=226.0
Q ss_pred CCcccccccCCCcc---CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeec-cCceeEEEEEccCCCEEE
Q 038802 34 PESKYWSSFKPHQI---PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISS-FKDVVTCSSFRPDGSLLA 109 (532)
Q Consensus 34 ~~~~~w~~~~~~~~---~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 109 (532)
..+-+|+....... .-+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|+ +..+.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~ls 274 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLS 274 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEE
Confidence 34556766555422 22378999999999999999999999999999999999999988 99999999997 66899
Q ss_pred EEcCCCCEEEEECCCCceEEE-ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 110 ASDLSGLIQVFDVKSRTPLRR-LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 110 ~g~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
+|+.||.|..+|+...+.... +.+|...|..+.|++ ++.++++|+.|+.+.|||.....+...+..|...|.+++|+|
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence 999999999999988765555 889999999999999 999999999999999999988889999999999999999999
Q ss_pred CCCCEEEEEe--CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc---CCeEEEEEccCCCeeeEEccCC
Q 038802 189 VNGDMFVTGS--YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG---GNSVKIWDLIGGGKMVYSMESH 263 (532)
Q Consensus 189 ~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~ 263 (532)
....+||+|+ .|++|++||..++ ...........|.++.|++..+-++++. ++.|.||+..+. +.+..+.+|
T Consensus 354 ~q~~lLAsGGGs~D~~i~fwn~~~g--~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH 430 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRCIKFWNTNTG--ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGH 430 (484)
T ss_pred CccCceEEcCCCcccEEEEEEcCCC--cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCC
Confidence 9999999975 4899999999974 4444556788999999999887666654 579999999887 888999999
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
...|..++++|+ +..+++|+.|.++++|++-+.
T Consensus 431 ~~RVl~la~SPd---------g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 TSRVLYLALSPD---------GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cceeEEEEECCC---------CCEEEEecccCcEEeccccCC
Confidence 999999999999 689999999999999998664
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=217.63 Aligned_cols=261 Identities=18% Similarity=0.244 Sum_probs=212.2
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC--EEEEEcCCCCEEEEE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS--LLAASDLSGLIQVFD 121 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd 121 (532)
...++.|.++|++++.+ ++++++|+.|.+|+|||+.+...+..+..|.+.|+++.|.++.. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 34568899999999996 88999999999999999999999999999999999999999765 899999999999999
Q ss_pred CCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 122 VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 122 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
..+..++..+++|.+.|+.++.+| .+++.++.+.|+.++.||+-+|+.-....- ...-+.+.|+| .|.+|+.++.+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~-~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSP-QGDHFVVSGRN- 189 (362)
T ss_pred cCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcC-CCCEEEEEecc-
Confidence 999999999999999999999999 999999999999999999988876544432 22233489999 89988888876
Q ss_pred eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 202 TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
.|-+|.+.+........ ....+.++.|... ..|++|+ ++.|.+||..+. .+...+.+|...|.++.+-.+..
T Consensus 190 ~i~i~q~d~A~v~~~i~--~~~r~l~~~~l~~-~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~--- 262 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIE--NPKRILCATFLDG-SELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPE--- 262 (362)
T ss_pred EEEEEecccHhHhhhhh--ccccceeeeecCC-ceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCC---
Confidence 49999887644333332 3356777877744 4555555 889999998775 88999999999999998654422
Q ss_pred ccccccEEEEEecCCeEEEEECCCc-----eEEEeeecCCCeeEEE
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKM-----KVTHSMRFPAPLMSVA 321 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~ 321 (532)
+.+|+++|.||.|++||++.. +.+..+.....++|+.
T Consensus 263 ----~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 263 ----HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred ----ceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 689999999999999998765 3344443444444443
No 83
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1e-28 Score=243.95 Aligned_cols=228 Identities=16% Similarity=0.290 Sum_probs=188.6
Q ss_pred CccCccccCeeEEEEcC-CCCeEEEEEeCCeEEEEeCCCc-------eEEEEeeccCceeEEEEEccCC-CEEEEEcCCC
Q 038802 45 HQIPGLVSSINSIVFSP-TTSHLFAATHSASLTLFSSQTL-------EKHSAISSFKDVVTCSSFRPDG-SLLAASDLSG 115 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp-~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg 115 (532)
..+.+|.++|++++|+| ++.+|++|+.|+.|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34689999999999999 7889999999999999998764 3466788999999999999975 6999999999
Q ss_pred CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce-EEEEEeCCCCCEE
Q 038802 116 LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV-RCGDCSPVNGDMF 194 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~l 194 (532)
+|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.+|.+.+ ..+.|.+ ++..+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLI 226 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeE
Confidence 999999999999999999999999999999 99999999999999999999999998888887653 4677888 66666
Q ss_pred EEEe----CCCeEEEEEcccCCceeE-EEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEEcc-CCCcc
Q 038802 195 VTGS----YDHTVKLWDVRVENSKSV-MEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYSME-SHNKT 266 (532)
Q Consensus 195 ~s~s----~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~ 266 (532)
++++ .|+.|++||+++...... ........+....|++++.++++++ |+.|++||+.++ .+..... .+..+
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~~~~s~~~ 305 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCSSYSSVEP 305 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEeeccCCCC
Confidence 6544 478999999987543322 2233445666778899999888765 899999999887 4444433 34556
Q ss_pred eEEEEEecc
Q 038802 267 VTSVCVGRV 275 (532)
Q Consensus 267 i~~~~~~~~ 275 (532)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 788888876
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=249.86 Aligned_cols=260 Identities=23% Similarity=0.417 Sum_probs=228.4
Q ss_pred CCCCCCcccccccCCCc----cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC
Q 038802 30 LSQTPESKYWSSFKPHQ----IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG 105 (532)
Q Consensus 30 ~~~~~~~~~w~~~~~~~----~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 105 (532)
.+.+...+.|+...... +.||.+.|.+++|...+..+++|+.|.++++||..++.+...+.+|.+.|.++... +
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~ 301 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--P 301 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--C
Confidence 45666778999876643 68999999999999878899999999999999999999999999999999999874 4
Q ss_pred CEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEE
Q 038802 106 SLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGD 185 (532)
Q Consensus 106 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 185 (532)
..+++|+.|.+|++|++.++..+..+.+|.++|.++.. ++.++++|+.|++|++||+.+++++.++.+|...|.++.
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 57888999999999999999999999999999999998 578999999999999999999999999999999999998
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccC-CceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccC-
Q 038802 186 CSPVNGDMFVTGSYDHTVKLWDVRVE-NSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMES- 262 (532)
Q Consensus 186 ~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~- 262 (532)
+.+ . +.+++|+.|++|++||+++. ++...+. .|..-+..+.+ .+++|++++ |++|++||..++ .++..+.+
T Consensus 379 ~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~ 452 (537)
T KOG0274|consen 379 VDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG-ECLRTLEGR 452 (537)
T ss_pred ecC-c-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecccC-ceeeeeccC
Confidence 865 3 99999999999999999997 4554444 66666655544 578899988 999999999887 78888888
Q ss_pred CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEee
Q 038802 263 HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM 311 (532)
Q Consensus 263 ~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (532)
|...|..+++. ...+++++.||.+++||+.+++....+
T Consensus 453 ~~~~v~~l~~~-----------~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 453 HVGGVSALALG-----------KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CcccEEEeecC-----------cceEEEEecCCeeEEEecccCchhhhh
Confidence 67889888886 246999999999999999999888766
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=240.04 Aligned_cols=278 Identities=21% Similarity=0.368 Sum_probs=237.7
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEE--EEeeccCceeEE-EEEcc-CCCEEEEEcCCCCEEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKH--SAISSFKDVVTC-SSFRP-DGSLLAASDLSGLIQVF 120 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~g~~dg~i~iw 120 (532)
+.+.||...|..+++.+.. .+++++.||++++|+-...+.. ..+.+|.+.|.+ +++-+ ++-.+++|+.|++|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5678999999999987665 7899999999999997554433 446777787777 88875 55569999999999999
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
...+..++..+++|...|+|+.... ++. +++||.|.++++|-. +++...+.+|+..|.++...| ++ .++|||.|
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaD 160 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSAD 160 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCc
Confidence 9999999999999999999998764 444 999999999999975 566667999999999999998 44 89999999
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
.+|++|.-.+ ...++. +|..-|..+++-+++.++-++.||.|+.|++ ++ .++....+|..-++++....+
T Consensus 161 KtIklWk~~~--~l~tf~-gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~~----- 230 (745)
T KOG0301|consen 161 KTIKLWKGGT--LLKTFS-GHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG-EVLLEMHGHTNFVYSISMALS----- 230 (745)
T ss_pred ceeeeccCCc--hhhhhc-cchhheeeeEEecCCCeEeecCCceEEEEec-cC-ceeeeeeccceEEEEEEecCC-----
Confidence 9999997633 555555 7999999999999887777777999999998 34 788899999999999997666
Q ss_pred ccccccEEEEEecCCeEEEEECCCceEEEeeecCC-CeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA-PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
+..+++++.|++++||+.. ++.+.+.++. .|+++.+-++|. +++|++||.|+||.....
T Consensus 231 ----~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 231 ----DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ----CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 5789999999999999977 8889999887 899999988875 678999999999998854
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-29 Score=229.55 Aligned_cols=251 Identities=22% Similarity=0.323 Sum_probs=212.2
Q ss_pred ccCccccCeeEEEEcCCCCe-EEEEEeCCeEEEEeCCCc----------eEEEEeeccCceeEEEEEccC-CCEEEEEcC
Q 038802 46 QIPGLVSSINSIVFSPTTSH-LFAATHSASLTLFSSQTL----------EKHSAISSFKDVVTCSSFRPD-GSLLAASDL 113 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~-l~~~~~d~~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~ 113 (532)
....|.+.|+.+.+-|..+. +++.+.++.|+|||..+. .+-..+.+|.+.-++++|++. .-.|++|+.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 34679999999999998874 555677899999997542 222367889988888999984 457889999
Q ss_pred CCCEEEEECCCCc-------eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC--CCeEEEeccCCCCceEEE
Q 038802 114 SGLIQVFDVKSRT-------PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA--GESVVLDLFGHKDYVRCG 184 (532)
Q Consensus 114 dg~i~iwd~~~~~-------~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i 184 (532)
|++|++||+.... ....+.+|...|..++|++.+...++++++|+.+.|||++ +.++.+...+|...|.|+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 9999999996532 3456789999999999999899999999999999999999 566677788999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCC-CEEEEEc-CCeEEEEEccCCC--------
Q 038802 185 DCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGG-------- 254 (532)
Q Consensus 185 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~-------- 254 (532)
+|+|.++.+|||||.|++|.+||+|+.........+|...|.++.|+|.. ..|++++ |+.+.+||+..-+
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 99999999999999999999999999777666666899999999999965 4677777 9999999986432
Q ss_pred -----eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 255 -----KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 255 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
.++..-.+|...|..+.|+|.. ...+++.+.|+.+.||.+..
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~e--------PW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNE--------PWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCC--------CeEEEEecCCceEEEeeccc
Confidence 2456677999999999999986 67899999999999999763
No 87
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-28 Score=208.68 Aligned_cols=240 Identities=20% Similarity=0.283 Sum_probs=213.3
Q ss_pred EeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC
Q 038802 88 AISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG 167 (532)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 167 (532)
.+.+|..+++.+.|+.+|.+|.+|+.|.++.+|-..+|+.+.++.+|.+.|+|+..+. +..++++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 4678999999999999999999999999999999989999999999999999999988 889999999999999999999
Q ss_pred CeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-----CCeEEEEEcccCC-------ceeEEEecCCCcEEEEEEecCCC
Q 038802 168 ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-----DHTVKLWDVRVEN-------SKSVMEVNHGKPIEDVMFLPSGG 235 (532)
Q Consensus 168 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~ 235 (532)
|+++..+. ...+|..+.|++ ++++++.++. .+.|.++|++... +...+. .+.+.++.+.|.|-+.
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGE 160 (327)
T ss_pred CcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCC
Confidence 99998887 567899999999 8887776654 3679999998422 222222 4668899999999999
Q ss_pred EEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC
Q 038802 236 LIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP 314 (532)
Q Consensus 236 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (532)
+|++|. +|.|.+||++++...+.....|...|+.++++++ ..++++++.|.+-++||..+.+++.++...
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d---------~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD---------RTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC---------cceEEecccCccceeeeccceeeEEEeeec
Confidence 999999 8999999999987888888999999999999999 789999999999999999999999999999
Q ss_pred CCeeEEEEecCCCEEEEEecCCcEEE
Q 038802 315 APLMSVAFSPDCMTRVIGTSNGTIFA 340 (532)
Q Consensus 315 ~~v~~~~~s~~~~~l~~g~~dg~i~i 340 (532)
.||++.+++|-...++.|+...-.-|
T Consensus 232 ~PvN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred ccccceecccccceEEecCCceeeee
Confidence 99999999998888888765443333
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.9e-29 Score=210.81 Aligned_cols=249 Identities=14% Similarity=0.214 Sum_probs=218.3
Q ss_pred EEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEE--EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 87 SAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLR--RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+... ...+|.+.|-.++|+|.+.+.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567788999999999999999999999999999998765443 34689999999999998999999999999999999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN 243 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~ 243 (532)
++.++++..+....+.+ -+.|+| ++.+++.++.|..|.+.|.++.+... .......+..++|+.++.+++... -|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~--~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVN--EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceee--hhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999887666666 588999 99999999999999999999844333 334456778888987766655555 69
Q ss_pred eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEE
Q 038802 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAF 322 (532)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 322 (532)
+|.|...... +++.++..|.....|+.|+|+ ++++++|+.|..+.+||++..-+++.+. ++-||..++|
T Consensus 170 ~v~ILsypsL-kpv~si~AH~snCicI~f~p~---------GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 170 CVEILSYPSL-KPVQSIKAHPSNCICIEFDPD---------GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred eEEEEecccc-ccccccccCCcceEEEEECCC---------CceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence 9999998876 899999999999999999999 7899999999999999999999888886 7889999999
Q ss_pred ecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 323 SPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 323 s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
|.||++||+|+.|-.|-|=...++.+.
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeE
Confidence 999999999999999999999888765
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.8e-28 Score=211.90 Aligned_cols=267 Identities=21% Similarity=0.331 Sum_probs=216.9
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
.+.|.++.|+|.++.|++++.||.+++|+.........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 568999999999999999999999999999877544444 5789999999987 457899999999999999987644 4
Q ss_pred ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
+..|..+|.|+.+++ ....+++||.|++|++||.+.......+. ....|.++.. .++.|+.|+.|..+.+||+++
T Consensus 90 igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEccc
Confidence 556999999999998 77889999999999999999765555554 3447888876 568899999999999999998
Q ss_pred CCceeE-EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC---eeeEEccCCCc---------ceEEEEEeccC
Q 038802 211 ENSKSV-MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG---KMVYSMESHNK---------TVTSVCVGRVG 276 (532)
Q Consensus 211 ~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~---~~~~~~~~~~~---------~i~~~~~~~~~ 276 (532)
...... ....-.-.+.|+++.|++.=.++++ ||.|.+=.+.... .....+..|.. +|++++|+|-
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~- 243 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI- 243 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-
Confidence 544331 2224566789999999877677777 9988776654431 22334444532 7999999998
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEec
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~ 334 (532)
...++||+.||.|.+||+.+.+.+..+. .+..|.+++|+.||..||+|++
T Consensus 244 --------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 --------HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --------cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 5789999999999999999988887776 6678999999999999999976
No 90
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=99.97 E-value=4.3e-30 Score=210.02 Aligned_cols=147 Identities=39% Similarity=0.603 Sum_probs=142.8
Q ss_pred cCCCCCCCCCcEEEeCcccccchhHHHhhcccchHHHHHHhh-CCCCChhHHHHHHHHHhhchHHHHhcCCChHhHHHHH
Q 038802 379 RGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVL-NGKNPENVVAVMEELVARKKLMKCVSNLDNEELGLLL 457 (532)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~al~~al-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll 457 (532)
||++..+...+.++...++.|++.||++|++|+|++||+.|| ..++|..++++++||.+|++++.|+.++++..++|||
T Consensus 1 rG~~~~~~~~d~~v~~~~~~kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL 80 (148)
T PF09384_consen 1 RGKDYKPEQDDIVVEDKKKKKLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPIL 80 (148)
T ss_pred CCCCCCCCCCceeecCcccccchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHH
Confidence 467778888999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 038802 458 SFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPL 525 (532)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~g~l~~~ 525 (532)
+|+.+++++|||+++++.++..||++|++.+++++.+.++|.+|+..+++|++.+++|+++.|+||||
T Consensus 81 ~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~l~G~ld~L 148 (148)
T PF09384_consen 81 KFLIKNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKELLELQGMLDML 148 (148)
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=229.35 Aligned_cols=242 Identities=20% Similarity=0.284 Sum_probs=212.5
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~ 124 (532)
++......|++++|-.||+++|+|...|.|+|||..+...++.+..|+.+|..+.|+| ++..+++|+.|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3567788999999999999999999999999999877777888999999999999999 456777889899999999999
Q ss_pred CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC-eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE-SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 125 ~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
......+.+|++.|.|.+|+|.++..++|||.||.|++||++.. ..+..+. |..+|..+.+.| .|..+++++. ..|
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lp-sgs~iasAgG-n~v 219 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALP-SGSLIASAGG-NSV 219 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcC-CCCEEEEcCC-CeE
Confidence 88766899999999999999977889999999999999999987 4555554 999999999999 8899999876 479
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
++||+.++.........|...|+|+++..++..|++++ |+.|++||+.+. +.+..+. ..++|.+++.+|+
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~-~~~pvLsiavs~d------- 290 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWK-YPGPVLSIAVSPD------- 290 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeee-cccceeeEEecCC-------
Confidence 99999977666666667999999999999999999999 999999997665 7777764 5789999999998
Q ss_pred ccccEEEEEecCCeEEEEE
Q 038802 283 AMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd 301 (532)
+..++.|..||.+.+-+
T Consensus 291 --d~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 291 --DQTVVIGMSNGLVSIRR 307 (487)
T ss_pred --CceEEEecccceeeeeh
Confidence 67899999999887763
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=225.60 Aligned_cols=264 Identities=18% Similarity=0.251 Sum_probs=217.9
Q ss_pred CCCCCCCCCcccccccCC------CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeec-cCceeEEE
Q 038802 27 PRNLSQTPESKYWSSFKP------HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISS-FKDVVTCS 99 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~------~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~ 99 (532)
..+.+.+.+.-+|..... +++.||..+|..+.||||.++|++|+.+..+.+||+.+|.....+.. +...+.++
T Consensus 239 LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc 318 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSC 318 (519)
T ss_pred EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCccee
Confidence 344567777788876443 56789999999999999999999999999999999999998877743 46789999
Q ss_pred EEccCCCEEEEEcCCCCEEEEECCCCceEEEecCC-CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCC
Q 038802 100 SFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSH-TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHK 178 (532)
Q Consensus 100 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 178 (532)
+|.|||..+++|+.|++|..||++. ......++- ...|.+++..+ |++++++.+.|..|++++.++......+. ..
T Consensus 319 ~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~ 395 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EE 395 (519)
T ss_pred EEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-cc
Confidence 9999999999999999999999874 445455443 35699999999 99999999999999999998765554343 45
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCc--EEEEEEec-CCCEEEEEc-CCeEEEEEccCCC
Q 038802 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKP--IEDVMFLP-SGGLIATAG-GNSVKIWDLIGGG 254 (532)
Q Consensus 179 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~ 254 (532)
.+|++++.+. ++.++++.-.+..+++||+.....+..+. +|... +..-+|-- +..++++|+ |+.|+||+..++
T Consensus 396 ~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg- 472 (519)
T KOG0293|consen 396 QPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG- 472 (519)
T ss_pred CceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-
Confidence 6899999998 99999999999999999998644444333 54433 33335543 457999999 999999998877
Q ss_pred eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 255 KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
+++..+.+|...|++++|+|.. ..+++++|.||+|+||....
T Consensus 473 kll~~LsGHs~~vNcVswNP~~--------p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSWNPAD--------PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeEeecCCcceeeEEecCCCC--------HHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999986 78999999999999998764
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.6e-29 Score=226.47 Aligned_cols=248 Identities=22% Similarity=0.311 Sum_probs=207.2
Q ss_pred eccCceeEEEEEccCC-CEEEEEcCCCCEEEEECCCCc----------eEEEecCCCCCEEEEEeecCCCcEEEEEeCCC
Q 038802 90 SSFKDVVTCSSFRPDG-SLLAASDLSGLIQVFDVKSRT----------PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG 158 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg 158 (532)
-.|.+.|+.+.+.|.. ..+|+++..+.|.|||..... +-..+.+|...-.+++|++.....+++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3578899999999954 566778889999999985421 22367889988889999998888999999999
Q ss_pred eEEEEECCCCe-------EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC-CceeEEEecCCCcEEEEEE
Q 038802 159 IVKFWDVAGES-------VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE-NSKSVMEVNHGKPIEDVMF 230 (532)
Q Consensus 159 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~ 230 (532)
+|++||+.... +...+.+|.+.|..++|++.+.++|++++.|+.+.|||+|++ .........|..+|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997532 345678999999999999989999999999999999999962 2333334489999999999
Q ss_pred ec-CCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE
Q 038802 231 LP-SGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT 308 (532)
Q Consensus 231 ~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (532)
+| ++.+||+|+ |++|++||+++...++.++.+|...|.++.|+|.. ...|++++.|+.+.+||+..-...
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~--------etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN--------ETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC--------CceeEecccCCcEEEEeccccccc
Confidence 99 566888888 99999999999989999999999999999999996 789999999999999998752211
Q ss_pred E------------eee---cCCCeeEEEEecCCCE-EEEEecCCcEEEEeecC
Q 038802 309 H------------SMR---FPAPLMSVAFSPDCMT-RVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 309 ~------------~~~---~~~~v~~~~~s~~~~~-l~~g~~dg~i~iw~~~~ 345 (532)
+ .|. |...|..++|+|.... +++.+.|+.+.||+...
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1 122 6678999999998755 67888999999999873
No 94
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.4e-28 Score=238.65 Aligned_cols=224 Identities=20% Similarity=0.291 Sum_probs=181.4
Q ss_pred EcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe--------EEEeccCCCCceE
Q 038802 111 SDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES--------VVLDLFGHKDYVR 182 (532)
Q Consensus 111 g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~~v~ 182 (532)
|+.+|.|++|+......+..+.+|.++|.+++|+|.++.+|++|+.||+|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56788999999988888889999999999999999557899999999999999997642 3446788999999
Q ss_pred EEEEeCCCCC-EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 183 CGDCSPVNGD-MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 183 ~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
+++|+| ++. ++++++.|++|++||++++.... ...+...|.+++|+|+|.+|++++ |+.|+|||++++ ..+..+
T Consensus 130 sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl 205 (568)
T PTZ00420 130 IIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSF 205 (568)
T ss_pred EEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEE
Confidence 999999 555 56899999999999999865443 334667899999999999999888 899999999987 777888
Q ss_pred cCCCcceEEEEE-----eccCCCCCccccccEEEEEecCC----eEEEEECCC-ceEEEeeecCCCee---EEEEecCCC
Q 038802 261 ESHNKTVTSVCV-----GRVGNESGEEAMQYRILSVALDG----YMKVFDYGK-MKVTHSMRFPAPLM---SVAFSPDCM 327 (532)
Q Consensus 261 ~~~~~~i~~~~~-----~~~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~~~v~---~~~~s~~~~ 327 (532)
.+|.+.+....+ +++ +.++++++.|+ .|+|||+++ .+++..+.++.... .....++|.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d---------~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGD---------DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred ecccCCceeEEEEeeeEcCC---------CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 899886554433 345 56888888774 799999995 56666666443333 333345688
Q ss_pred EEEEEecCCcEEEEeecCcc
Q 038802 328 TRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 328 ~l~~g~~dg~i~iw~~~~~~ 347 (532)
++++|+.|+.|++|++..+.
T Consensus 277 l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEEEEECCCeEEEEEccCCc
Confidence 99999999999999997653
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.6e-30 Score=214.93 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=214.4
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
-++.||.+.|.+..++.+....++++.|-+-++||.-+|..+.++. |...|.+++|+.|.++|++|+.+..++|||++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 4678999999999999998888999999999999999999888774 788999999999999999999999999999976
Q ss_pred C-ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 125 R-TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 125 ~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
. .+...+.+|.+.|..+.|+. ..+.++++++|++|++||.+++..++++. ...+|+++.+++ ++.++.++ +.+.|
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gssV 207 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGSSV 207 (334)
T ss_pred CCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEEe-cCcee
Confidence 4 46677899999999999998 77778888999999999999999999886 567899999998 88766554 56789
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
.+||..+...... ......|.+...+|+...+++|+ |..++.||..++.....-.++|.++|.|+.|+|+
T Consensus 208 ~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd------- 278 (334)
T KOG0278|consen 208 KFWDAKSFGLLKS--YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD------- 278 (334)
T ss_pred EEeccccccceee--ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-------
Confidence 9999988544443 34567899999999999888888 8999999999984433334899999999999999
Q ss_pred ccccEEEEEecCCeEEEEECCCceE
Q 038802 283 AMQYRILSVALDGYMKVFDYGKMKV 307 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (532)
+...++||.||+|++|....++.
T Consensus 279 --GE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 279 --GELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred --CceeeccCCCceEEEEEecCCCc
Confidence 67899999999999998766543
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.3e-30 Score=239.88 Aligned_cols=286 Identities=17% Similarity=0.272 Sum_probs=243.3
Q ss_pred ccccCee---EEEEc-CCCCeEEEEEeCCeEEEEeCCCce------EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEE
Q 038802 49 GLVSSIN---SIVFS-PTTSHLFAATHSASLTLFSSQTLE------KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQ 118 (532)
Q Consensus 49 ~h~~~V~---~i~~s-p~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 118 (532)
.|...|. .+..+ |.+++|++|+.||.|++|+..... ...++..|.+.|+.+....+|+.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444555 44444 456789999999999999875422 3567788999999999999999999999999999
Q ss_pred EEECCCC--ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe--EEE--------ecc-CCCCceEEEE
Q 038802 119 VFDVKSR--TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES--VVL--------DLF-GHKDYVRCGD 185 (532)
Q Consensus 119 iwd~~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~--------~~~-~~~~~v~~i~ 185 (532)
+|+...+ -+..++..|..-|.|+++-..+...+++||-|+.|.+||++++. .+. .+. ++...|.+++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999876 57788899999999999933388999999999999999999772 222 222 7889999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCC
Q 038802 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHN 264 (532)
Q Consensus 186 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 264 (532)
.++ .+..+++|+..+.+++||.++.+....+. +|...|..+..+++|+.+++++ ||+|++||+... +++.++..|.
T Consensus 179 ~N~-t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~ 255 (735)
T KOG0308|consen 179 MNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHK 255 (735)
T ss_pred cCC-cceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEecc
Confidence 998 88899999999999999999976666665 9999999999999999999998 999999999877 8999999999
Q ss_pred cceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC-ceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 265 KTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK-MKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 265 ~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
..|+++..+|+ -..+++|+.||.|..-|+.+ .+....++.+.+|..+..+.+.+-+-+++.|+.|.-|..
T Consensus 256 e~VWaL~~~~s---------f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 256 EGVWALQSSPS---------FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred CceEEEeeCCC---------cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 99999999987 67899999999999999998 555666677788998888866666678889999999987
Q ss_pred cCc
Q 038802 344 KKK 346 (532)
Q Consensus 344 ~~~ 346 (532)
...
T Consensus 327 ~~~ 329 (735)
T KOG0308|consen 327 EPD 329 (735)
T ss_pred ccc
Confidence 654
No 97
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=221.94 Aligned_cols=262 Identities=18% Similarity=0.268 Sum_probs=233.1
Q ss_pred CCCCCCCCcccccccCCC-----------ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee-ccCce
Q 038802 28 RNLSQTPESKYWSSFKPH-----------QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS-SFKDV 95 (532)
Q Consensus 28 ~~~~~~~~~~~w~~~~~~-----------~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~ 95 (532)
.+.+.++.+.+|+..... .+--+.++|.|++|+.|...+|+|+.||.|++|.+.+|.+++.+. .|...
T Consensus 229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG 308 (508)
T KOG0275|consen 229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG 308 (508)
T ss_pred eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC
Confidence 445788999999865442 345688999999999999999999999999999999999999986 89999
Q ss_pred eEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc
Q 038802 96 VTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF 175 (532)
Q Consensus 96 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 175 (532)
|+|+.|+.|+..+++++.|.++++.-+.+|++++.+++|.+-|+...|.+ ++.++++++.||+|++|+..+.+++.+++
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred eeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999998885
Q ss_pred C--CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec--CCCcEEEEEEecCCCEEEEEc-CCeEEEEEc
Q 038802 176 G--HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN--HGKPIEDVMFLPSGGLIATAG-GNSVKIWDL 250 (532)
Q Consensus 176 ~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~ 250 (532)
. ...+|+++...|.+...++.+....++.+.++.. +....+..+ .++...+.+.+|.|.++.+.+ |+.++.|..
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 4 4567889999998899999999999999999864 333333322 356677889999999999998 999999999
Q ss_pred cCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 251 IGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.++ ..-.++.-|...+..++-+|. .+.+++-+.||.+++|.
T Consensus 467 ~sG-~LE~tl~VhEkdvIGl~HHPH---------qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 467 LSG-KLERTLPVHEKDVIGLTHHPH---------QNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecC-ceeeeeecccccccccccCcc---------cchhhhhcccchhhhcC
Confidence 887 788889999999999999998 78899999999999995
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=219.87 Aligned_cols=241 Identities=23% Similarity=0.321 Sum_probs=216.7
Q ss_pred ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 038802 94 DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173 (532)
Q Consensus 94 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 173 (532)
..++++...|....+++|+.|.++.++|..+++.+..++||...|+.+.|+| +...+++++.|..|++|..........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccc
Confidence 4678888888878999999999999999999999999999999999999999 888999999999999999988888888
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc
Q 038802 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 174 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
...|..+|+.+..+| .+.||++++.||+..+.|++++......... ..-.+++.+|+|||.++.+|. |+.++|||+.
T Consensus 299 ~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 889999999999999 9999999999999999999998776666542 345689999999999999999 9999999999
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCC--CeeEEEEecCCCEE
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA--PLMSVAFSPDCMTR 329 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l 329 (532)
+. ..+..+.+|.++|..+.|+.+ |.++++++.|+.|++||++..+...++..+. ++.+++|.+.|.+|
T Consensus 378 s~-~~~a~Fpght~~vk~i~FsEN---------GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 378 SQ-TNVAKFPGHTGPVKAISFSEN---------GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred Cc-cccccCCCCCCceeEEEeccC---------ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 88 588899999999999999998 7999999999999999999988888887554 69999999999999
Q ss_pred EEEecCCcEEEEeecCc
Q 038802 330 VIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 330 ~~g~~dg~i~iw~~~~~ 346 (532)
+.+++|=.|++++-.+.
T Consensus 448 ~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTK 464 (506)
T ss_pred EeecceeEEEEEecccc
Confidence 99987766666654443
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.1e-28 Score=225.70 Aligned_cols=280 Identities=18% Similarity=0.265 Sum_probs=239.9
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc---eEEEEeec--cCceeEEEEEccCCCEEEEEcCCCCEEEEEC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL---EKHSAISS--FKDVVTCSSFRPDGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 122 (532)
..|..-|.++.+|...+++++|+. |.|+|||+... ..+..+.. ....|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 567888899999999999999886 88999998643 22223322 3568999999999999999999999999999
Q ss_pred CCCceE--EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 123 KSRTPL--RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 123 ~~~~~~--~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
.....- ..+....-.+.+++.+| |.+..+++..||.|.|||+.+...++.+.+|.+.+.||.+++ +|..|.||+-|
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCc
Confidence 765432 23333445677889999 999999999999999999999999999999999999999999 99999999999
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (532)
.+|+.||++++...... ...+.|.++.++|++.+++.|- ++.+.|..... .....+.-|.+-|.++.|.+.
T Consensus 573 ntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~c---- 644 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYC---- 644 (705)
T ss_pred cceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCC--ccceeecccccEEEEEEeccc----
Confidence 99999999986554443 4467899999999999999998 67787777543 456677789999999999999
Q ss_pred CccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
+.++++.+.|..+..|...-|..+...+...+|+++++|.|.+++++|+.|..-.+|.+
T Consensus 645 -----GkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 645 -----GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----CceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999999999998888888899999999999999999999998888865
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.5e-29 Score=221.54 Aligned_cols=256 Identities=21% Similarity=0.320 Sum_probs=220.2
Q ss_pred CCCCCCCcccccccCCC-----ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc
Q 038802 29 NLSQTPESKYWSSFKPH-----QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP 103 (532)
Q Consensus 29 ~~~~~~~~~~w~~~~~~-----~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 103 (532)
....+.-+++|+.+... ++.|..++|++++|.++++++++++.|+.+++||+.+.+...++.+|++.|+++.|..
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~ 271 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL 271 (459)
T ss_pred hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc
Confidence 34566778999977654 5688889999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
....+++|+.|.+|++||+....+.+++- ....+.+|+.+ ...+++|-.|++|++||+++..+......+. .|++
T Consensus 272 ~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtS 346 (459)
T KOG0288|consen 272 SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTS 346 (459)
T ss_pred cccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc-ceee
Confidence 77779999999999999999988877765 34556666663 4568899999999999999999999888766 8999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe---cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEE
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV---NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 259 (532)
+..++ ++..+.+++.|.++.+.|+++......+.- ......+.+.|||++.|+++|+ ||.|+||++.++ ++...
T Consensus 347 l~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~ 424 (459)
T KOG0288|consen 347 LDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKV 424 (459)
T ss_pred Eeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence 99999 999999999999999999998665554432 2344588999999999999999 999999999887 77666
Q ss_pred ccCCCc--ceEEEEEeccCCCCCccccccEEEEEecCCeEEEE
Q 038802 260 MESHNK--TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 260 ~~~~~~--~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
+..... .|+++.|+|. +..+++++.++.+.+|
T Consensus 425 l~~s~s~~aI~s~~W~~s---------G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 LSLSTSNAAITSLSWNPS---------GSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCCcceEEEEEcCC---------CchhhcccCCcceEec
Confidence 665444 5999999998 6789999999999999
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-28 Score=204.35 Aligned_cols=252 Identities=21% Similarity=0.281 Sum_probs=206.2
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC---ceEEEecCCCCCEEEEEe-ecCCCcEEEEEeCCCeEEEEEC
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR---TPLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDV 165 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~-~~~~~~~l~s~s~dg~i~iwd~ 165 (532)
..|.+.|..+...-.|+.||+++.|++|+|+.+... +.+.++.+|.+||+.++| +|.-+.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 568888998888888999999999999999999764 467889999999999999 4567899999999999999998
Q ss_pred CCCe--EEEeccCCCCceEEEEEeCCC-CCEEEEEeCCCeEEEEEcccCC--ceeEEEecCCCcEEEEEEecC---C---
Q 038802 166 AGES--VVLDLFGHKDYVRCGDCSPVN-GDMFVTGSYDHTVKLWDVRVEN--SKSVMEVNHGKPIEDVMFLPS---G--- 234 (532)
Q Consensus 166 ~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~---~--- 234 (532)
.+++ .......|...|++++|.|.+ +-.|++++.||.|.+.+.+... ....+...|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8774 344557899999999999943 4578999999999999988651 223344579999999999995 4
Q ss_pred --------CEEEEEc-CCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 235 --------GLIATAG-GNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 235 --------~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
+.|++++ |+.|+||+..++. ..-.++.+|...|..++|.|.... ...++++++.||++.||..+.
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecC
Confidence 4588888 9999999987752 234458899999999999997421 256899999999999997652
Q ss_pred ----ceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 305 ----MKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 305 ----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
.+..-.-.++..++.++||+.|..|++++.|+.|.+|.-+..
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 121111126788999999999999999999999999986543
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=213.32 Aligned_cols=284 Identities=14% Similarity=0.199 Sum_probs=237.2
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC--ceEEEEeeccCceeEEEEEccCCC-EEEEEcCCCCEEEEECCCC
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT--LEKHSAISSFKDVVTCSSFRPDGS-LLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~ 125 (532)
...++|+++.|+|..+.+++++.|+.++||.++. ...++.+.--..+|.+++|.|+|. .+++++.....+.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 3567999999999999999999999999997753 445666666678999999999999 8889999999999999887
Q ss_pred ceEE--EecCCC-CCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCe
Q 038802 126 TPLR--RLKSHT-RPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 126 ~~~~--~~~~h~-~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
+... ...++. ..+.....++ ++++|+..+..|.|.+....+++.+.++. -.+.|..++|+. ++..|++++.+|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGE 367 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCce
Confidence 6433 333443 3566777788 88999999999999999999999888876 567899999997 8999999999999
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccC-----CCeeeEEccCCCcceEEEEEeccC
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIG-----GGKMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
|.+||+++......+.....-.-++++.++++.++|+|+ .|.|.|||..+ ..+++..+..-...|+++.|+++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d- 446 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD- 446 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc-
Confidence 999999997666666655555567888899999999999 69999999642 34677777777889999999999
Q ss_pred CCCCccccccEEEEEec--CCeEEEEECCCceEEEeeecC----CCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 277 NESGEEAMQYRILSVAL--DGYMKVFDYGKMKVTHSMRFP----APLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
...|+.+|. +..+++-.+.+..+...+... +.|+|++|||.|.+++.|..+|.+.+|++.
T Consensus 447 --------~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 --------AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --------hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 456665554 678999999888887777632 579999999999999999999999999975
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=231.45 Aligned_cols=286 Identities=19% Similarity=0.297 Sum_probs=229.5
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc----eEEEEeecc---CceeEEEEEcc-CCCEEEEEcCCCCEEEEEC
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTL----EKHSAISSF---KDVVTCSSFRP-DGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~----~~~~~~~~~---~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~ 122 (532)
....++|..+++-..+++++. ..+.+|.+... ++...+... .-.+..+.|+. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 456778888899888888775 56777765432 111111111 12455677775 6789999999999999999
Q ss_pred CC---CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 123 KS---RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 123 ~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
.. .+.+..|..|...+++++|++...++|++||.||+|++||++..+...++.+....|+.+.|+|..++.|+++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 76 566678889999999999999889999999999999999999999999999999999999999988999999999
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCC
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
.|.+++||+|...........|.++|.|+.|+|++.+||+|+ |+.|+|||+.+.. ....++ ....++.++.|-|..
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~- 275 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPAR- 275 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCc-
Confidence 999999999987666666668999999999999999999999 9999999997542 233333 235689999999986
Q ss_pred CCCccccccEEEEEec--CCeEEEEECCC-ceEEEeee-cCCCeeEEEEec-CCCEEEEEecCCcEEEEeecCc
Q 038802 278 ESGEEAMQYRILSVAL--DGYMKVFDYGK-MKVTHSMR-FPAPLMSVAFSP-DCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~--dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
...|++++. |-.|+|||++. .-+..++. |...++.++|.. |...+.+++.||.|..-.++..
T Consensus 276 -------~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 276 -------SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred -------cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567777765 77899999975 44556665 778889999965 4567889999998876555543
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=201.55 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=216.4
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceE--EEEee--ccCceeEEEEEccCCCEEEE-EcCCCCEE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEK--HSAIS--SFKDVVTCSSFRPDGSLLAA-SDLSGLIQ 118 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~-g~~dg~i~ 118 (532)
...+.+|.+.|++++|+.||++|++++.|+.|++|+++.... .+.+. ..-+..+.+.|+||-+-+++ +-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 345799999999999999999999999999999999876432 11111 11246688999998776554 44556799
Q ss_pred EEECCCC---ceEE---------EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEE
Q 038802 119 VFDVKSR---TPLR---------RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDC 186 (532)
Q Consensus 119 iwd~~~~---~~~~---------~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 186 (532)
+|.+... .... .-+.|.-.+-.+-... ++.+|++++.|..|.+|+++ |+.+..+......-+..++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987432 1111 1123556666666665 88999999999999999998 8888888777777778899
Q ss_pred eCCCCCEEEEEeCCCeEEEEEcccCC---c---eeEE-EecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC-----
Q 038802 187 SPVNGDMFVTGSYDHTVKLWDVRVEN---S---KSVM-EVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG----- 253 (532)
Q Consensus 187 ~~~~~~~l~s~s~dg~i~iwd~~~~~---~---~~~~-~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~----- 253 (532)
+| +|+++++++..--|++|.+--.+ . ...+ ..+|...|..++|+|+...+++.+ ||++++||..-.
T Consensus 237 SP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 SP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99 99999999999999999863221 1 1122 238999999999999999999999 999999997521
Q ss_pred -CeeeEEc----cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee--cCCCeeEEEEecCC
Q 038802 254 -GKMVYSM----ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPDC 326 (532)
Q Consensus 254 -~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~ 326 (532)
.+.+... ....+.-..+.++|.| . +++.+....+++|..++++....++ |...|.+++|+++|
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g---------~-~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSG---------D-SLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCC---------c-EEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 1122221 2223344589999985 3 4455556789999999998888776 88999999999999
Q ss_pred CEEEEEecCCcEEEEeecCc
Q 038802 327 MTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 327 ~~l~~g~~dg~i~iw~~~~~ 346 (532)
+++++++ |..++++.-.++
T Consensus 386 ~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cEEeeec-ceeeeeecCCCc
Confidence 9999866 667887764433
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=209.07 Aligned_cols=251 Identities=22% Similarity=0.318 Sum_probs=225.2
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEE
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iw 163 (532)
...+.+.+|.+.|+.++-......+.+++.|.+.+||.++++.|+..+.+|.+.|+++.|++ .+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHH
Confidence 45667789999999999888778899999999999999999999999999999999999999 99999999999999999
Q ss_pred EC------CC----------------------------------CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 164 DV------AG----------------------------------ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 164 d~------~~----------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
.. .. ..++..+.+|...|.+..|.. .++.+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccc
Confidence 62 10 013556788999999999998 89999999999999
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
.+||+.++.....+. +|....+.++-+|..+++++++ |.+.++||++..-..+..+++|...|++..|..+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d------- 368 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD------- 368 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-------
Confidence 999999987776666 8999999999999999999999 9999999999776778899999999999999876
Q ss_pred ccccEEEEEecCCeEEEEECCCc-eEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 283 AMQYRILSVALDGYMKVFDYGKM-KVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
..+++|+.|.+|++||+++. .++.++..+.+++.++.+..+..++.--.+..|++||++...
T Consensus 369 ---d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 369 ---DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ---CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 57999999999999999984 567889999999999999998899999999999999998654
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=234.34 Aligned_cols=241 Identities=19% Similarity=0.326 Sum_probs=210.7
Q ss_pred CeeEEEEcC-CCCeEEEEEeCCeEEEEeCCC---ceEEEEeeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCCCce
Q 038802 53 SINSIVFSP-TTSHLFAATHSASLTLFSSQT---LEKHSAISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 53 ~V~~i~~sp-~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
.+..+.|+. +.+++|+++..|.|.+||+.. .+.+..+..|...+++++|++ ...+|++|+.||+|++||+...+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455666764 356899999999999999976 556667889999999999998 567889999999999999999988
Q ss_pred EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC-eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 038802 128 LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE-SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 206 (532)
..++.+....|.++.|+|..+..++++.+.|.+.+||++.. ++...+.+|.++|.|+.|+| ++.+|||||.|+.|+||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEE
Confidence 89999999999999999988999999999999999999864 45667789999999999999 99999999999999999
Q ss_pred EcccCCceeEEEecCCCcEEEEEEecCCC-EEEEEc---CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGG-LIATAG---GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 207 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
|+.+........+....+|.++.|-|... .|++++ |-.|+|||++...-+..++..|...++.++|....
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d------ 321 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD------ 321 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC------
Confidence 99988888888888899999999999765 566665 56899999998888899999999999999997632
Q ss_pred ccccEEEEEecCCeEEEEEC
Q 038802 283 AMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~ 302 (532)
...+.+++.||+|..-.+
T Consensus 322 --~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 322 --RINLWSCSKDGTVLQHLF 339 (839)
T ss_pred --ceeeEeecCccHHHHhhh
Confidence 568899999998765443
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=225.59 Aligned_cols=310 Identities=17% Similarity=0.221 Sum_probs=251.0
Q ss_pred CCCCCCCCcccccccCCC---------ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc--eEEEEeeccCcee
Q 038802 28 RNLSQTPESKYWSSFKPH---------QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL--EKHSAISSFKDVV 96 (532)
Q Consensus 28 ~~~~~~~~~~~w~~~~~~---------~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~v 96 (532)
.+...++.++.|+.-... .+..|.+.|+.+....+++.|++++.|.+|++|+...+ -+..++..|.+.|
T Consensus 41 fTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV 120 (735)
T KOG0308|consen 41 FTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV 120 (735)
T ss_pred EecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchh
Confidence 345678889999854322 34679999999999999999999999999999999876 5778889999999
Q ss_pred EEEEE-ccCCCEEEEEcCCCCEEEEECCCCc--eEE--------Eec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 97 TCSSF-RPDGSLLAASDLSGLIQVFDVKSRT--PLR--------RLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 97 ~~~~~-~~~~~~l~~g~~dg~i~iwd~~~~~--~~~--------~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
.|+++ .++..++|+|+-|+.|.+||+.++. .+. .+. ++..+|.+++.++ .+..+++|+..+.+++||
T Consensus 121 kcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 121 KCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred eeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEec
Confidence 99999 7889999999999999999999772 222 223 7889999999998 889999999999999999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN 243 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~ 243 (532)
.++++.+..+.+|++.|+++..++ +|..++++|.||+|++||+....+...+. .|...|+++..+|+-..+.+|+ ||
T Consensus 200 prt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred cccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCcceEEecCCCC
Confidence 999999999999999999999999 99999999999999999999877776654 6788899999999999999999 99
Q ss_pred eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE---------------
Q 038802 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT--------------- 308 (532)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------- 308 (532)
.|..=|+++..+... +.....+|..+..... ..-+.+++.|+.|+-|...-.-.+
T Consensus 278 ~i~~Tdl~n~~~~tl-ick~daPv~~l~~~~~---------~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~ 347 (735)
T KOG0308|consen 278 NIYRTDLRNPAKSTL-ICKEDAPVLKLHLHEH---------DNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNN 347 (735)
T ss_pred cEEecccCCchhheE-eecCCCchhhhhhccc---------cCCceeeeccccceecCCccccccccCCCCCcccccCCC
Confidence 999999988533332 2234556666766644 234577888888888865431110
Q ss_pred ----------EeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccccc
Q 038802 309 ----------HSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVE 350 (532)
Q Consensus 309 ----------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 350 (532)
..++...+|...++-.|.+++++-...|.+.+||+-..+..+
T Consensus 348 ~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 348 HSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence 111122245555666788999999999999999998876553
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=199.47 Aligned_cols=243 Identities=23% Similarity=0.315 Sum_probs=190.9
Q ss_pred ccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCC-CceE-EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC
Q 038802 91 SFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKS-RTPL-RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG 167 (532)
Q Consensus 91 ~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~-~~~~-~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 167 (532)
...+.|.+++||| ...++++|+.||+|++|+++. +..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 4568999999999 556777999999999999976 3333 34457999999999998 899999999999999999999
Q ss_pred CeEEEeccCCCCceEEEEEeCCCCC--EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCe
Q 038802 168 ESVVLDLFGHKDYVRCGDCSPVNGD--MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNS 244 (532)
Q Consensus 168 ~~~~~~~~~~~~~v~~i~~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~ 244 (532)
++ +..+..|.++|.++.|.+ ... +|+|||.|++|+.||+|....... ....+.+.++..- ..+++.+. +..
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t--~~LPeRvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVAT--LQLPERVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred CC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeee--eeccceeeehhcc--CceeEEEecCCc
Confidence 95 556778999999999987 544 899999999999999998554444 4456677777653 34555555 899
Q ss_pred EEEEEccCCCeeeEEccC-CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc--eEEEeee-cC------
Q 038802 245 VKIWDLIGGGKMVYSMES-HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM--KVTHSMR-FP------ 314 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~------ 314 (532)
|.+|+++++......... -.-.+.+++..++. .-.+.|+-+|.+-|..+..+ +.-.+|+ |.
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~---------~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDK---------DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecC---------CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 999999876444333332 23468899988884 44589999999999998875 2223333 22
Q ss_pred ---CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 315 ---APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 315 ---~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
-.|++++|+|....|+++++||.+.+||-+...++
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 14788999999999999999999999998877655
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=223.01 Aligned_cols=304 Identities=17% Similarity=0.250 Sum_probs=242.7
Q ss_pred CCCCcccccccCCC------ccCccccCeeEEEEcCC-----------CCeEEEEEeCCeEEEEeCCCceEEEEe-----
Q 038802 32 QTPESKYWSSFKPH------QIPGLVSSINSIVFSPT-----------TSHLFAATHSASLTLFSSQTLEKHSAI----- 89 (532)
Q Consensus 32 ~~~~~~~w~~~~~~------~~~~h~~~V~~i~~sp~-----------~~~l~~~~~d~~v~i~~~~~~~~~~~~----- 89 (532)
.+...-+|+.-.+. .+.-|...|+.+.--|. ...+.+++.|++|++||+..+..-..+
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 34556678754332 34568888888876651 125889999999999998652111100
Q ss_pred --------------------------------eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCC
Q 038802 90 --------------------------------SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRP 137 (532)
Q Consensus 90 --------------------------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 137 (532)
-.....+.+++.+|+|++||+|..-|+++||++...+....+..|...
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE 503 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE 503 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce
Confidence 011346899999999999999999999999999998888899999999
Q ss_pred EEEEEeecC--CCcEEEEEeCCCeEEEEECCC-CeEEEeccCCCCceEEEEEeCCCC--CEEEEEeCCCeEEEEEcccCC
Q 038802 138 VRFVKYPFL--DKLHLVSGGDDGIVKFWDVAG-ESVVLDLFGHKDYVRCGDCSPVNG--DMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 138 i~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~s~dg~i~iwd~~~~~ 212 (532)
|.|+.|+.. ..++|++++.|.-|.+||+.. ...++++.+|...|+++.|.- ++ ..+++++.|+.|.+--.+...
T Consensus 504 ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 504 ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhcccc
Confidence 999999753 356899999999999999864 456778899999999999987 44 578899999877644333211
Q ss_pred ceeEEE----ecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccC---CCcceEEEEEeccCCCCCcccc
Q 038802 213 SKSVME----VNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMES---HNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 213 ~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
....+. .-....+..+++.|+.+++++++ |..|+|||+.++ +..+.+++ |.+....+...|.
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPS--------- 652 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPS--------- 652 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCC---------
Confidence 112221 12345789999999999999999 999999999988 66777764 6677888888888
Q ss_pred ccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 285 QYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
+-|+++.+.|.++.++|+.+++++..+. |...|+.+.|.+|.+.|++.+.||.|+||++...
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 6899999999999999999999997765 8889999999999999999999999999999875
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.4e-27 Score=215.55 Aligned_cols=256 Identities=25% Similarity=0.391 Sum_probs=202.8
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC----ceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCC
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR----TPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDG 158 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg 158 (532)
.....+.+|+..|.++++.|.|..|++|+.|.+|++||+... +..+.+. .....|.++.|++ .+..|++.+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCc
Confidence 344567888999999999999999999999999999998643 2222332 3456799999999 888888888889
Q ss_pred eEEEEECCCCeEEE------------eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCcee-EEEe----cC
Q 038802 159 IVKFWDVAGESVVL------------DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS-VMEV----NH 221 (532)
Q Consensus 159 ~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~----~~ 221 (532)
..+++|-...+... ..++|...++|.+|+|.+...|+|+++||++++||+...+... ++.. +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 99999976544332 2357999999999999888999999999999999998754332 2221 24
Q ss_pred CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC--eeeEEccCCCc--ceEEEEEeccCCCCCccccccEEEEEecCCe
Q 038802 222 GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG--KMVYSMESHNK--TVTSVCVGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 222 ~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
.-++++++|+|+|+++|+|. ||.|.+|+..+.. .....-..|.. .|+++.||++ +++|++-|.|++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d---------g~~LlSRg~D~t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD---------GNYLLSRGFDDT 387 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc---------cchhhhccCCCc
Confidence 45789999999999999998 9999999975432 22334456777 8999999999 689999999999
Q ss_pred EEEEECCCc-eEEEeee---cCCCeeEEEEecCCCEEEEEec------CCcEEEEeecCcccc
Q 038802 297 MKVFDYGKM-KVTHSMR---FPAPLMSVAFSPDCMTRVIGTS------NGTIFAGRRKKKENV 349 (532)
Q Consensus 297 i~iwd~~~~-~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~------dg~i~iw~~~~~~~~ 349 (532)
+++||++.. +++.... ..-+-+.++|||+.+.|++|++ .|.+++|+..+-+.+
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 999999874 4444433 3346788999999999999875 578999999887655
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.3e-26 Score=197.26 Aligned_cols=287 Identities=19% Similarity=0.309 Sum_probs=225.5
Q ss_pred CccccCeeEEEEcCC-CCeEEEEEeCCeEEEEeCCCce----------EEE-----EeeccCceeEEEEEcc-CCCEEEE
Q 038802 48 PGLVSSINSIVFSPT-TSHLFAATHSASLTLFSSQTLE----------KHS-----AISSFKDVVTCSSFRP-DGSLLAA 110 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~-~~~l~~~~~d~~v~i~~~~~~~----------~~~-----~~~~~~~~v~~~~~~~-~~~~l~~ 110 (532)
..|.+.|+++...+. |+|+++|+.||.|.+||+++.. ... .-.+|.-.|..+.|-| |.-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 568899999999884 7899999999999999987532 111 1235777999999999 6678889
Q ss_pred EcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCC--CcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 111 SDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLD--KLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 111 g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
++-|.++++||..+.+....|+ -.+.|.+-+++|-. ..++++|..|-.|++.|+.+|...+++.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988777776 56678877887732 45788889999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCc------------eeE--EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENS------------KSV--MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~------------~~~--~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
...-.|++|+.||.|++||++.... .+. ....|.+.|..++|..++.++++++ |..+++|+..++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 7777899999999999999985411 111 1235788999999999999999999 999999999876
Q ss_pred CeeeEEcc--CCCcce-EEEEE-eccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCE
Q 038802 254 GKMVYSME--SHNKTV-TSVCV-GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMT 328 (532)
Q Consensus 254 ~~~~~~~~--~~~~~i-~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 328 (532)
......+. .|...+ ..+.. +.+ ...++---.++.+.++++-++..+..+. |-..|.|.++-|+-+.
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~---------s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMD---------SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred cccccccccccccccccceEEEeecc---------cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 43332221 122111 01111 111 2344444556889999999999888887 6678999999999999
Q ss_pred EEEEecCCcEEEEeec
Q 038802 329 RVIGTSNGTIFAGRRK 344 (532)
Q Consensus 329 l~~g~~dg~i~iw~~~ 344 (532)
..+|..|+.|..|-..
T Consensus 350 ~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSPA 365 (397)
T ss_pred hhccccCCcccccccc
Confidence 9999999999999873
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.9e-25 Score=209.94 Aligned_cols=270 Identities=15% Similarity=0.157 Sum_probs=206.4
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE-EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEE
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL-AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVK 142 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 142 (532)
..+++++.|+.+++||..+++....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 467888899999999999998888887654 46789999999876 5677889999999999888777765544 46788
Q ss_pred eecCCCcEEE-EEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCC-eEEEEEcccCCceeEEEec
Q 038802 143 YPFLDKLHLV-SGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH-TVKLWDVRVENSKSVMEVN 220 (532)
Q Consensus 143 ~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~ 220 (532)
|+| +++.++ +++.|+.|++||+.+++.+..+.. ...+.+++|+| ++.++++++.++ .+.+||.++....... .
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--~ 154 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV--L 154 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE--E
Confidence 999 666555 456789999999998887776653 33467899999 999999888775 4677898775433322 2
Q ss_pred CCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEEccCCC-----c--ceEEEEEeccCCCCCccccccEEEEE
Q 038802 221 HGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYSMESHN-----K--TVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 221 ~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
......+++|+|++++++.++ ++.|.+||+.++ +.+..+..+. . ....++|+|++ ...+++.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--------~~~~~~~ 225 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDG--------KTAFVAL 225 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCC--------CEEEEEc
Confidence 334567899999999875543 789999999876 5444443221 1 23468889884 2334445
Q ss_pred ecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEe-cCCcEEEEeecCcccc
Q 038802 292 ALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGT-SNGTIFAGRRKKKENV 349 (532)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~ 349 (532)
+.++.+.+||..+++......+...+.+++|+|+|++|++++ .+|.|.+||..+.+..
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 667789999999998887776677899999999999998874 6899999999987654
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=185.07 Aligned_cols=244 Identities=19% Similarity=0.286 Sum_probs=203.8
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCC--Cce---EEEEeeccCceeEEEEEccC----CCEEEEEc-CCCC
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQ--TLE---KHSAISSFKDVVTCSSFRPD----GSLLAASD-LSGL 116 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~--~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~~g~-~dg~ 116 (532)
-..|.++|+|.+|+|+|.++++|+.|..|++.-.. +.. .-..+..|.+.|..++|-.+ |.+|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 46799999999999999999999999999986543 322 22356779999999999753 45777664 4667
Q ss_pred EEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC-------CCCceEEEEEeCC
Q 038802 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG-------HKDYVRCGDCSPV 189 (532)
Q Consensus 117 i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~ 189 (532)
|++-|...|+..+.+.+|++-|.++ ++- ++..+++|+.|.+|++||++-..++.++.. .+..|.++++.|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp- 241 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP- 241 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-
Confidence 8888889999999999999999887 343 888999999999999999998888877632 236789999999
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC---eeeEEccCCCc
Q 038802 190 NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG---KMVYSMESHNK 265 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~---~~~~~~~~~~~ 265 (532)
.+++|++|-.|....+||++.+..+..+. +|...|.++.|+|...++++++ |..|++-|+...- -++.....|..
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 99999999999999999999877666655 8999999999999999999999 9999999987431 23444557888
Q ss_pred ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 266 TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
.+..+.|+|. ..-+++.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~---------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQ---------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCc---------cceeeeccCcceEEEeccC
Confidence 8999999998 6679999999999999764
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.8e-28 Score=233.93 Aligned_cols=256 Identities=23% Similarity=0.440 Sum_probs=227.9
Q ss_pred CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEE
Q 038802 62 TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFV 141 (532)
Q Consensus 62 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 141 (532)
...+++.+.....+++|+.+. +..|...|.|+.....++.+++|+.|..+-+|.+.....+..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 334455555566777887653 45678889999887788999999999999999998888888899999999999
Q ss_pred EeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecC
Q 038802 142 KYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNH 221 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 221 (532)
.|++ ...+|++|+.+|+|++||++.++.++++.+|...+.++.|+| -+.++++|+.|+.+++||++...+...+. +|
T Consensus 77 ~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~ 153 (825)
T KOG0267|consen 77 TFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYK-SH 153 (825)
T ss_pred ecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeec-CC
Confidence 9999 888999999999999999999999999999999999999999 89999999999999999999766666666 58
Q ss_pred CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEE
Q 038802 222 GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 222 ~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
...|..+.|+|+|++++.++ |..++|||+..+ +....+..|.+.+..+.|+|. ..++.+||.|+++++|
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~---------e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPL---------EVLLAPGSSDRTVRFW 223 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCch---------hhhhccCCCCceeeee
Confidence 99999999999999999999 689999999877 889999999999999999998 7889999999999999
Q ss_pred ECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCC
Q 038802 301 DYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNG 336 (532)
Q Consensus 301 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg 336 (532)
|+++.+.+...+ ....|.+.+|+|++..+++|....
T Consensus 224 dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 224 DLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 999999988876 567999999999999999887654
No 115
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=208.21 Aligned_cols=296 Identities=20% Similarity=0.245 Sum_probs=227.2
Q ss_pred ccccCCCccCccccCeeEEEEcCCCC--eEEEEEeCCeEEEEeCCC----ceEEEEeeccCceeEEEEEcc-CCCEEEEE
Q 038802 39 WSSFKPHQIPGLVSSINSIVFSPTTS--HLFAATHSASLTLFSSQT----LEKHSAISSFKDVVTCSSFRP-DGSLLAAS 111 (532)
Q Consensus 39 w~~~~~~~~~~h~~~V~~i~~sp~~~--~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 111 (532)
.+.+......-+.++|++++|+|..+ .+|+|...|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 33334444567899999999999765 788888899999999952 233556678999999999999 55788999
Q ss_pred cCCCCEEEEECCCCceE--EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-EEeccCCCCceEEEEEeC
Q 038802 112 DLSGLIQVFDVKSRTPL--RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 112 ~~dg~i~iwd~~~~~~~--~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~ 188 (532)
+.||+|++-|++....- .........+..+.|+. +...++.+..=|...+||.+++.. ...+..|...|++++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999876433 33333555677888887 666677777777999999998765 555677889999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCcee---EEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc---CCCeeeEEcc
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKS---VMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI---GGGKMVYSME 261 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~---~~~~~~~~~~ 261 (532)
....+|+|+|.|++.+|||+|...... .....|...|.+..|||.+-.|++.+ |+.|+|||.. ....+..++.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 889999999999999999999754443 55668999999999999776677777 9999999974 2223333332
Q ss_pred CCCc------ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC--CCeeE-EEEecCCCEE-EE
Q 038802 262 SHNK------TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP--APLMS-VAFSPDCMTR-VI 331 (532)
Q Consensus 262 ~~~~------~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~-~~~s~~~~~l-~~ 331 (532)
|.. ......|.|+ ..++++|..-..|-|+|-..++.+..+..+ ..|.+ ..|+|-+..+ +.
T Consensus 413 -Hn~~t~RwlT~fKA~W~P~---------~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDPD---------YNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred -ccCcccccccchhheeCCC---------ccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 222 2345688887 789999999999999999999988776533 34555 4799988844 45
Q ss_pred EecCCcEEEEeecC
Q 038802 332 GTSNGTIFAGRRKK 345 (532)
Q Consensus 332 g~~dg~i~iw~~~~ 345 (532)
|+..|.|+||.-+.
T Consensus 483 ~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 483 GNSSGKIYVFTNKK 496 (498)
T ss_pred CCccceEEEEecCC
Confidence 56678899997654
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2e-26 Score=230.44 Aligned_cols=245 Identities=18% Similarity=0.296 Sum_probs=205.7
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC------------------ceEEEEeeccCceeEEEEEccCCCEE
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT------------------LEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
...|.+.|+|+.|+|||++||+|+.|+.|.||.... .+....+.+|...|..++|+|++.+|
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 467999999999999999999999999999998652 23677789999999999999999999
Q ss_pred EEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC------CCceE
Q 038802 109 AASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH------KDYVR 182 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~ 182 (532)
++++.|++|.|||..+...+..+.+|.+.|-.+.|.| -+++|++-++|++|++|++.+....+.+.++ ...+.
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999 9999999999999999998877676666543 34577
Q ss_pred EEEEeCCCCCEEEEEeC----CCeEEEEEcccCCceeEEEecCCCcEEEEEEecC-----CC------------EEEEEc
Q 038802 183 CGDCSPVNGDMFVTGSY----DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-----GG------------LIATAG 241 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~------------~l~~~~ 241 (532)
-+.|+| +|.+|++... -.++.|.+-.+.+. .....+|..++.++.|+|. .. .+|+|+
T Consensus 224 RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 224 RLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred ecccCC-CcCeecchhhccCCcceeEEEecCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 899999 9999998643 23577777544332 3334589999999999981 11 567777
Q ss_pred -CCeEEEEEccCCCeeeEE-ccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 242 -GNSVKIWDLIGGGKMVYS-MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 242 -d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
|++|.||..... +++.. ..-....|.+++|+|+ +..|+++|.||+|.++.++.
T Consensus 302 qDrSlSVW~T~~~-RPl~vi~~lf~~SI~DmsWspd---------G~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 302 QDRSLSVWNTALP-RPLFVIHNLFNKSIVDMSWSPD---------GFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCccEEEEecCCC-CchhhhhhhhcCceeeeeEcCC---------CCeEEEEecCCeEEEEEcch
Confidence 999999998665 44433 3345678999999999 67899999999999999876
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-26 Score=221.20 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=227.4
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc-eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL-EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
..|...-+.++|.|+|.++++++.||.|++|+..+. +...++..+...|.+++- ++.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468889999999999999999999999999987665 444555557788888775 45599999999999999998887
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 206 (532)
.-..+...+-++++++|+. ++.+++.||+|-.|++.++.+......+.+|..+|.++.|+| ++++||+.+.||.|++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEE
Confidence 6666666778899999998 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EcccCCceeEEE-------ecCCCcEEEEEEecCCC-EEEEEcCCeEEEEEccCCCeeeEEcc--CCCcceEEEEEeccC
Q 038802 207 DVRVENSKSVME-------VNHGKPIEDVMFLPSGG-LIATAGGNSVKIWDLIGGGKMVYSME--SHNKTVTSVCVGRVG 276 (532)
Q Consensus 207 d~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 276 (532)
|+.++.....+. ......+..++|+|+|. +++.+.|+.|++|+..+. .....+. .+...+..+.|+|.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~~~~~~wsPn- 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSKFSDLQWSPN- 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccceEEEEEcCC-
Confidence 998765443332 12355677899999855 555555999999997765 5554443 24445999999999
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
|.||++++.||.|.|||.++.+. -.....|.+++|.|++..+-.-...|...+|
T Consensus 244 --------G~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 --------GKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred --------CcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 78999999999999999998332 2244689999999998877666666665555
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=207.30 Aligned_cols=283 Identities=18% Similarity=0.272 Sum_probs=216.4
Q ss_pred eEEEEcCCCCeEEEEEeCC-----eEEEEeCCCceEEEEeeccC----ceeEEEEEcc-------CCCEEEEEcCCCCEE
Q 038802 55 NSIVFSPTTSHLFAATHSA-----SLTLFSSQTLEKHSAISSFK----DVVTCSSFRP-------DGSLLAASDLSGLIQ 118 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~----~~v~~~~~~~-------~~~~l~~g~~dg~i~ 118 (532)
-.+..-|+.++++++-.+. .|++|+-... ..+..|. ....|++|.. .|+++|.|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 3456667677777665432 4667764431 1122222 3346667643 367999999999999
Q ss_pred EEECCCCc---eEE------------------EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC
Q 038802 119 VFDVKSRT---PLR------------------RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH 177 (532)
Q Consensus 119 iwd~~~~~---~~~------------------~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 177 (532)
|||+.-.. +.. .-.+|+..|.++.|+....+.|++||.|.+|++||+.++++..++..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 99985211 000 123688899999998877889999999999999999999999999999
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC-EEEEEc-CCeEEEEEccCCCe
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG-LIATAG-GNSVKIWDLIGGGK 255 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~-d~~i~iwd~~~~~~ 255 (532)
.+.|.++.|+|..+.++++|++|++|.+.|.|..... -......+.|..++|.|... .++++. ||+++-+|+|..++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCcccc-CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 9999999999988999999999999999999963322 22234577899999999655 344444 89999999999989
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC---CCeeEEEEecCC-CEEEE
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP---APLMSVAFSPDC-MTRVI 331 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~-~~l~~ 331 (532)
++.++..|...|.++++++.. ..++++++.|+.|++|++..-.......+. +...|+++.|+- -.++.
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~--------p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQT--------PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred ceeEEEeccCCcceEEecCCC--------CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEe
Confidence 999999999999999999875 678999999999999998764433222221 346677788875 45778
Q ss_pred EecCCcEEEEeecCcccc
Q 038802 332 GTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 332 g~~dg~i~iw~~~~~~~~ 349 (532)
|+..+.++|||+.+...+
T Consensus 437 GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 437 GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCccceEEEeecccChhH
Confidence 888889999999887655
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=208.14 Aligned_cols=239 Identities=20% Similarity=0.350 Sum_probs=203.0
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
+|...|.+++.+|||+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|......+++++.|++|++|+++....+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 89999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
.++.+|.+.|..+.-.. -...+-+|+.|+++++|++... ....+.+|.+.+-|++|- +...|++||.+|.|.+|++
T Consensus 280 etlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHhCCccceeeechhc-ccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeee
Confidence 99999999999998875 5666666779999999999544 344678899999999997 5788999999999999999
Q ss_pred ccCCceeEEEecCC-----------CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC---eeeEEccCCCcceEEEEEe
Q 038802 209 RVENSKSVMEVNHG-----------KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG---KMVYSMESHNKTVTSVCVG 273 (532)
Q Consensus 209 ~~~~~~~~~~~~~~-----------~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~ 273 (532)
...++..+....|+ ..|++++..|...++++|+ +|.|++|-+..+. .++..+. -.+-|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 88777666655442 2688999999999999999 9999999998773 4445554 57789999999
Q ss_pred ccCCCCCccccccEEEEEecCCeEEEE
Q 038802 274 RVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 274 ~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
++| ...++..+....+--|
T Consensus 435 ~sg--------k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 435 NSG--------KRIVAGIGKEHRLGRW 453 (479)
T ss_pred cCC--------CEEEEeccccccccee
Confidence 995 2344444554444334
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=208.83 Aligned_cols=263 Identities=16% Similarity=0.195 Sum_probs=218.6
Q ss_pred CCCCCCCCCCCcccccccC---CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEE
Q 038802 25 PKPRNLSQTPESKYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSF 101 (532)
Q Consensus 25 ~~~~~~~~~~~~~~w~~~~---~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 101 (532)
....+.+-++.+++|+.-+ ..++..|.+.|..+++.. ..+++++.|.+|+.|.+.. ....++.+ +..+..+.-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccccc
Confidence 4456678999999999765 456789999999999987 5688999999999999775 45666654 566778887
Q ss_pred ccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce
Q 038802 102 RPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV 181 (532)
Q Consensus 102 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 181 (532)
+..+..++||+. .|.|||.....++..+.-....|.++.|+|.....|++|+.|+.|.+||++++.+++.+. -.-.-
T Consensus 156 ~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRT 232 (433)
T KOG0268|consen 156 HRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRT 232 (433)
T ss_pred ccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccc
Confidence 777888999875 499999998899999998889999999999888889999999999999999998887664 23345
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
+.++|+| +...|++|+.|..++.||++..........+|.+.|.++.|||.|+-+++|+ |.+|+||..+.+. .-...
T Consensus 233 N~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiY 310 (433)
T KOG0268|consen 233 NTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIY 310 (433)
T ss_pred cceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhh
Confidence 6799999 9999999999999999999987666666668999999999999999999999 9999999987652 11111
Q ss_pred -cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 261 -ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 261 -~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
..--..|.++.||.| ..++++||.|+.|++|.....
T Consensus 311 htkRMq~V~~Vk~S~D---------skyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMD---------SKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hHhhhheeeEEEEecc---------ccEEEecCCCcceeeeecchh
Confidence 111236899999999 789999999999999985543
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=9.6e-26 Score=195.12 Aligned_cols=240 Identities=22% Similarity=0.310 Sum_probs=192.2
Q ss_pred cCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEE
Q 038802 92 FKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV 171 (532)
Q Consensus 92 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 171 (532)
..+.|..+.|+|.+..|++++.||++++||+........++ |..++.+++|. +...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc--CCceEEEeccCceEEEEEecCCcce
Confidence 36789999999999999999999999999998876555555 99999999998 5667999999999999999987654
Q ss_pred EeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEE-cCCeEEEEEc
Q 038802 172 LDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATA-GGNSVKIWDL 250 (532)
Q Consensus 172 ~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~ 250 (532)
.+..|..+|+|+.+++ ..+.+++||.|++|++||.+. ............|.++..+ |+.|+.| .+..+.+||+
T Consensus 89 -~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN--KVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred -eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc--cccccccccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 3556999999999998 788999999999999999997 3333334455688888775 5555554 4999999999
Q ss_pred cCCCeeeEEc-cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc----eEEEeee-cC---------C
Q 038802 251 IGGGKMVYSM-ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM----KVTHSMR-FP---------A 315 (532)
Q Consensus 251 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~---------~ 315 (532)
++...+.... ..-.-.+.++++.|+ +.=+++++-||.|.+=.++.. +....|+ |. -
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn---------~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPN---------GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecC---------CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9875444222 234557899999996 344788899999888766654 2223333 21 2
Q ss_pred CeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 316 PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 316 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
||++++|+|-...|+||++||.|.+||..+++..
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 7999999999999999999999999999998766
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.4e-26 Score=216.87 Aligned_cols=251 Identities=22% Similarity=0.334 Sum_probs=213.2
Q ss_pred CCCCCCCcccccccCC-----CccCccccCeeE-EEEcC-CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEE
Q 038802 29 NLSQTPESKYWSSFKP-----HQIPGLVSSINS-IVFSP-TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSF 101 (532)
Q Consensus 29 ~~~~~~~~~~w~~~~~-----~~~~~h~~~V~~-i~~sp-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 101 (532)
+.+.++++++|..... +.+.+|.+-|.+ ++|.+ ++-.+++|+.|+.+.+|...+..+..++.+|...|.|++.
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI 109 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeec
Confidence 3456788999986433 445678888887 88886 3335999999999999999999999999999999999998
Q ss_pred ccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce
Q 038802 102 RPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV 181 (532)
Q Consensus 102 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 181 (532)
..++. +++||.|.++++|-.. ++...+++|...|+++++.| .+ .++|||.|.+|++|.- ++.+.++.+|.+.|
T Consensus 110 ~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V 182 (745)
T KOG0301|consen 110 GEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV 182 (745)
T ss_pred CCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhccchhhe
Confidence 88887 9999999999999764 56667999999999999998 55 7999999999999974 78899999999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
+.+++.+ +..|++++.||.|++|++. +...... .+|..-|.++....++..+++++ |++++||+.. .+...+
T Consensus 183 RgL~vl~--~~~flScsNDg~Ir~w~~~-ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I 255 (745)
T KOG0301|consen 183 RGLAVLD--DSHFLSCSNDGSIRLWDLD-GEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVI 255 (745)
T ss_pred eeeEEec--CCCeEeecCCceEEEEecc-Cceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEE
Confidence 9999986 5578999999999999994 3444443 48999999999778888888888 9999999964 667777
Q ss_pred cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 261 ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
.-....|+++++-++| -+++|+.||.|+||...
T Consensus 256 ~lPttsiWsa~~L~Ng----------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNG----------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ecCccceEEEEEeeCC----------CEEEeccCceEEEEEec
Confidence 6666689999998875 48999999999999865
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=208.89 Aligned_cols=253 Identities=17% Similarity=0.234 Sum_probs=214.0
Q ss_pred CeEEEEEe-CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEE
Q 038802 64 SHLFAATH-SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVK 142 (532)
Q Consensus 64 ~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 142 (532)
.+++++.. ...+.+|.+...........-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 46666654 45889999876555544444568899999999999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeCCCeEEEEECC---------CCeEEEeccCCCCceEEEEEeCC-CCCEEEEEeCCCeEEEEEcccCC
Q 038802 143 YPFLDKLHLVSGGDDGIVKFWDVA---------GESVVLDLFGHKDYVRCGDCSPV-NGDMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 143 ~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~dg~i~iwd~~~~~ 212 (532)
|+. |+.+|++||.||.|.+|++- +-++.+.+..|.-+|+++.+.+. ....++|+|.|.++++||+..+.
T Consensus 131 fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 131 FSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 998 99999999999999999863 34678889999999999998873 34689999999999999999854
Q ss_pred ceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC---------------eeeEEccCCCc--ceEEEEEec
Q 038802 213 SKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG---------------KMVYSMESHNK--TVTSVCVGR 274 (532)
Q Consensus 213 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~---------------~~~~~~~~~~~--~i~~~~~~~ 274 (532)
.......+.++.+++.+|.++.+..|+ +|.|.+.++.... ..+..+.+|.+ .|+|++++-
T Consensus 210 --LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 --LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred --eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 444445678999999999999999988 8999988875431 23455678888 999999999
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCE
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMT 328 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 328 (532)
| +..|++|+.||.|+|||+.+.++++++. ..++|+.+.+.|-.+-
T Consensus 288 D---------gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 288 D---------GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERG 333 (476)
T ss_pred C---------ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccc
Confidence 9 6899999999999999999999999988 7799999999765433
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=200.11 Aligned_cols=246 Identities=20% Similarity=0.294 Sum_probs=205.7
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeec--cCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISS--FKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
++-.|.++|+++.|+|....|++|+.|++|++||.......+.++. ...+|.++.|+|.|.+|++|....++++||++
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 4678999999999999999999999999999999876544433332 24689999999999999999999999999999
Q ss_pred CCceEEEe---cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-cCCC-CceEEEEEeCCCCCEEEEEe
Q 038802 124 SRTPLRRL---KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGHK-DYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 124 ~~~~~~~~---~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~-~~v~~i~~~~~~~~~l~s~s 198 (532)
+.++...- .+|++.|+++.+++ .+.+.++||.||.|++||--+++++.++ ..|. ..|.+..|.. +++++++.+
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG 324 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSG 324 (430)
T ss_pred ceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecC
Confidence 98876654 36999999999999 9999999999999999999889998887 3455 4688888887 999999999
Q ss_pred CCCeEEEEEcccCCceeEEEecC----CCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 199 YDHTVKLWDVRVENSKSVMEVNH----GKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
.|..+++|.+.++.....+.-.. ..--+...|+....+++.-. .+.+.-||.++..+.-..-.+|.+.+..+.-
T Consensus 325 ~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 99999999999987777665321 11123456777777877776 5789999999876555555689999999999
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
+|. +.-+++|+.|-..++|--
T Consensus 405 SP~---------~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 405 SPV---------EPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCC---------CCceeeecccceeeeeee
Confidence 999 567999999999999963
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3.3e-24 Score=196.88 Aligned_cols=290 Identities=19% Similarity=0.222 Sum_probs=233.9
Q ss_pred CCCCCcccccccCCCcc---CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe---ec-cCceeEEEEEcc
Q 038802 31 SQTPESKYWSSFKPHQI---PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI---SS-FKDVVTCSSFRP 103 (532)
Q Consensus 31 ~~~~~~~~w~~~~~~~~---~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~-~~~~v~~~~~~~ 103 (532)
+.++-..+|+..+...+ ...+..|....|+|.++.+++....+.+.+|+...+...+.. .. ....|.|++|.+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 45666778987766554 456778899999999887777777899999999887665543 22 236899999999
Q ss_pred CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-------------
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV------------- 170 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------- 170 (532)
+|+ +++|.++|.|.||+..+.+..+....|.+.|.+++... ++. |++|+.|..|..||-. -+.
T Consensus 257 ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 257 NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPI 332 (626)
T ss_pred CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEecccc-ccccccccCchhcCCe
Confidence 986 78999999999999988877777779999999999986 665 6669999999999832 110
Q ss_pred ----------------------------EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC
Q 038802 171 ----------------------------VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG 222 (532)
Q Consensus 171 ----------------------------~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 222 (532)
.....+|.+....++.+| +.+.++|++.|+.+++|+ .....+.....
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~----~~k~~wt~~~~ 407 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN----DHKLEWTKIIE 407 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc----CCceeEEEEec
Confidence 012246888888999999 889999999999999999 24455555667
Q ss_pred CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 223 KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 223 ~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.++.|+.|+|.| .++.|. .|...+.|..+. ..+..-.. ..+++++.|+|+ +.+++.|+.|+.|++|-
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~---------G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPD---------GAFLAVGSHDNHIYIYR 475 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCC---------CCEEEEecCCCeEEEEE
Confidence 899999999999 777777 899999998874 44444444 889999999999 68999999999999999
Q ss_pred CCC-ceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 302 YGK-MKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 302 ~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
+.. +....... +..+|+.++||+|++++.+-+.|-.|..|
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 865 33333332 44899999999999999999999999999
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-24 Score=208.61 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=228.0
Q ss_pred eeEEEEcCCC--CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEe
Q 038802 54 INSIVFSPTT--SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRL 131 (532)
Q Consensus 54 V~~i~~sp~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 131 (532)
|+++. +|.. +.++.|+..|.+.+||+.+++.+.+++++.+.|+++.=+|-=..+|.|..+|+|.+++++.++.+.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 76664 4542 46889999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc-CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 132 KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 132 ~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
+...+.|+.++|..+....+++|+..|.+.+||++..+....+. .|.+.|....|.| ....+++++.|..+++|=..+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 95569999999998556677888888999999999887766554 6777777777777 666777777776666552210
Q ss_pred CC------------------------------------------------------------------------------
Q 038802 211 EN------------------------------------------------------------------------------ 212 (532)
Q Consensus 211 ~~------------------------------------------------------------------------------ 212 (532)
+.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 00
Q ss_pred ---------------------------------ceeEEEecCC------CcEEEEEEecCCCEEEEEc-CCeEEEEEccC
Q 038802 213 ---------------------------------SKSVMEVNHG------KPIEDVMFLPSGGLIATAG-GNSVKIWDLIG 252 (532)
Q Consensus 213 ---------------------------------~~~~~~~~~~------~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~ 252 (532)
....+...+. ..+++++.++.|++.+.|. .|.|-+|++.+
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 0000011122 4578899999999999888 89999999998
Q ss_pred CCeeeEEc---cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe-------------------
Q 038802 253 GGKMVYSM---ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS------------------- 310 (532)
Q Consensus 253 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------- 310 (532)
+ ....++ ..|.++|++++.... +..+++++.+|.+++||..+..++..
T Consensus 480 G-i~r~sf~~~~ah~~~V~gla~D~~---------n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 480 G-IHRKSFGDSPAHKGEVTGLAVDGT---------NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred C-eeecccccCccccCceeEEEecCC---------CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 7 556666 589999999999876 67899999999999999877442221
Q ss_pred ----------------------ee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 311 ----------------------MR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 311 ----------------------~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+. |.+.|++++|||||++|++++.|++|++||+.++...
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 22 6678999999999999999999999999999997544
No 127
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=7e-25 Score=191.11 Aligned_cols=292 Identities=19% Similarity=0.257 Sum_probs=224.6
Q ss_pred CCCccCccccCeeEEEEcC----CCCeEEEEEeCCeEEEEeCCCce---EEEEee--ccCceeEEEEEccC----CCEEE
Q 038802 43 KPHQIPGLVSSINSIVFSP----TTSHLFAATHSASLTLFSSQTLE---KHSAIS--SFKDVVTCSSFRPD----GSLLA 109 (532)
Q Consensus 43 ~~~~~~~h~~~V~~i~~sp----~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~ 109 (532)
..+...+|..+|..++|++ +...+++....+.+.+|+..... .++.+. .|......++|+-| ..++|
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 3455678999999999985 33445555556889999875432 333332 25667788888763 45899
Q ss_pred EEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec---cCCCCceEEEEE
Q 038802 110 ASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL---FGHKDYVRCGDC 186 (532)
Q Consensus 110 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~ 186 (532)
+|+.-|.|+|.|+.++++...+.+|...|+.+.|.|.+.++++++|.|..|++||+++..++..+ .+|.+.|.+++|
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999999988899999999999999999999998887 579999999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEEcccCCce-------------------------eE--EEecCCCcEEEEEEecCCCEEEE
Q 038802 187 SPVNGDMFVTGSYDHTVKLWDVRVENSK-------------------------SV--MEVNHGKPIEDVMFLPSGGLIAT 239 (532)
Q Consensus 187 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------~~--~~~~~~~~v~~i~~~~~~~~l~~ 239 (532)
++ ++.++++++.|.++++|++...+.. +. ....|...|.|+.|. |.++++
T Consensus 190 ~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 190 SL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred cC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 99 9999999999999999999732110 00 111355556666664 577887
Q ss_pred Ec-CCeEEEEEccCCC-------------eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 240 AG-GNSVKIWDLIGGG-------------KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 240 ~~-d~~i~iwd~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
-+ ++.|..|..-.-+ ..+..+.-....|+-+.|+-+.. ...|+.|...|.|.+||++..
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCC
Confidence 77 8999999872111 23344444555677776665532 678999999999999999986
Q ss_pred eEE--Eeee---cCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 306 KVT--HSMR---FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 306 ~~~--~~~~---~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
+.. .++. ....|...+|+.||..|+..+.||.|.-||.-
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 653 2222 34578999999999999999999999999864
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=187.18 Aligned_cols=283 Identities=12% Similarity=0.151 Sum_probs=219.7
Q ss_pred eeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC
Q 038802 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 54 V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 133 (532)
-.|+.|++.|.+||+|+.+|.|.|||+.+...-+.+.+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC----CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH----KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 209 (532)
..++|+.+.|+|.+.+..++.--+..-.+.++..+....--... +..-.+..|.+ .|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecc
Confidence 68899999999966666666555555555565543221111111 11112334677 89999999999999999999
Q ss_pred cCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCe--------eeEEccC--CCcceEEEEEeccCCC
Q 038802 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGK--------MVYSMES--HNKTVTSVCVGRVGNE 278 (532)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~--------~~~~~~~--~~~~i~~~~~~~~~~~ 278 (532)
+.+....+.......|..+.++..|+.++..+ |..|+.|++..-.. +.+.+.. ....=.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d--- 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD--- 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC---
Confidence 97777777666667899999999999998888 99999999863211 0111110 1123356788887
Q ss_pred CCccccccEEEEEec-CCeEEEEECCCceEEEeeecC--CCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 279 SGEEAMQYRILSVAL-DGYMKVFDYGKMKVTHSMRFP--APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+.|+++++. -..++||.-..|.+++.+... .....+.|+|-...+++- ..|.+++|.....+.
T Consensus 261 ------geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 261 ------GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ------ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 566666654 457999999999999988743 467889999987777766 789999999876544
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=202.70 Aligned_cols=241 Identities=18% Similarity=0.289 Sum_probs=205.1
Q ss_pred CCCCcccccccCCCcc---CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE
Q 038802 32 QTPESKYWSSFKPHQI---PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 32 ~~~~~~~w~~~~~~~~---~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
..+.+.+|...+..++ .--.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+|+.|+-||.+|
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 3446778887665544 3456789999999999999999899999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEECC---------CCceEEEecCCCCCEEEEEeecC-CCcEEEEEeCCCeEEEEECCCCeEEEeccCCC
Q 038802 109 AASDLSGLIQVFDVK---------SRTPLRRLKSHTRPVRFVKYPFL-DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHK 178 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~---------~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 178 (532)
++|+.||.|.+|.+. +-++++.+..|+-+|+++...+. ...+++|+|.|.++++||+..+..+.++. ..
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp 217 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FP 217 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cC
Confidence 999999999999873 23578889999999999998762 35689999999999999999999888775 56
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce---------------eEEEecCCC--cEEEEEEecCCCEEEEEc
Q 038802 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK---------------SVMEVNHGK--PIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 179 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------------~~~~~~~~~--~v~~i~~~~~~~~l~~~~ 241 (532)
..+.+++..| .+..++.|+.+|.|.+.++.+.... .....+|.. +|+|++++-||.+|++|+
T Consensus 218 ~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 218 SSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 7899999999 8899999999999999887543211 111235666 999999999999999999
Q ss_pred -CCeEEEEEccCCCeeeEEccCCCcceEEEEEecc
Q 038802 242 -GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRV 275 (532)
Q Consensus 242 -d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 275 (532)
||.|+|||+.+. ++++++....++|+.+.+.|-
T Consensus 297 ~dg~VcvWdi~S~-Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 297 EDGKVCVWDIYSK-QCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCCCEEEEecchH-HHHHHHhhhccccceeEeecc
Confidence 999999999887 888888767889999998654
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-23 Score=192.98 Aligned_cols=300 Identities=17% Similarity=0.285 Sum_probs=238.2
Q ss_pred CCCCCCcccccccCCCcc---CccccCeeEEEEcCC--CCeEEEEE--eCCeEEEEeCCCceEEEEeeccCceeEEEEEc
Q 038802 30 LSQTPESKYWSSFKPHQI---PGLVSSINSIVFSPT--TSHLFAAT--HSASLTLFSSQTLEKHSAISSFKDVVTCSSFR 102 (532)
Q Consensus 30 ~~~~~~~~~w~~~~~~~~---~~h~~~V~~i~~sp~--~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (532)
.+.++.+++|+.....++ ......|+|++|++. |.++++.. .+..+.+||.+.+......+..++.|....|+
T Consensus 130 ~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FH 209 (626)
T KOG2106|consen 130 RPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFH 209 (626)
T ss_pred CcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEec
Confidence 456688999998777665 456778999999984 44555543 34578999999988888888888999999999
Q ss_pred cCC-CEEEEEcCCCCEEEEECCCCceEEE---ecC-CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC
Q 038802 103 PDG-SLLAASDLSGLIQVFDVKSRTPLRR---LKS-HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH 177 (532)
Q Consensus 103 ~~~-~~l~~g~~dg~i~iwd~~~~~~~~~---~~~-h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 177 (532)
|.+ +++++++ .|.+..|+.+.+...++ +.. ...-|.|++|.+ +++ +++|..+|.|.||+..+.+.......|
T Consensus 210 Ptd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH 286 (626)
T KOG2106|consen 210 PTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAH 286 (626)
T ss_pred cCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeec
Confidence 955 5555555 78899999988765544 332 236799999997 665 899999999999999888887777799
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC---------------------------------------ceeEEE
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN---------------------------------------SKSVME 218 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------------------------------------~~~~~~ 218 (532)
.+.|.+++... +|. |++|+.|..|..||-.-.+ ......
T Consensus 287 ~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 287 DGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred CCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 99999999987 665 4559999999999831100 001112
Q ss_pred ecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeE
Q 038802 219 VNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYM 297 (532)
Q Consensus 219 ~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 297 (532)
.+|......++.+|+...+++++ |+.+++|+ .. ++..+.. -..++.++.|+|. + .++.|...|..
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~-k~~wt~~-~~d~~~~~~fhps---------g-~va~Gt~~G~w 430 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH-KLEWTKI-IEDPAECADFHPS---------G-VVAVGTATGRW 430 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CC-ceeEEEE-ecCceeEeeccCc---------c-eEEEeeccceE
Confidence 35777888999999999999999 99999999 22 4444432 3567889999998 4 79999999999
Q ss_pred EEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 298 KVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.+.|.++...+..-....+++++.|+|+|.+||.|+.|+.|++|.+.....
T Consensus 431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 999999977776655678999999999999999999999999999987643
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=212.43 Aligned_cols=242 Identities=18% Similarity=0.278 Sum_probs=205.3
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC-ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR-TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE 168 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 168 (532)
..|...-+.++|.|+|.+|++++.||.|++|+..+. .....+..+...|.+++. ..++|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence 368888999999999999999999999999998665 444444447888888886 5569999999999999999988
Q ss_pred eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEE
Q 038802 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKI 247 (532)
Q Consensus 169 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~i 247 (532)
+.-..+...+-++++++++. +|.+++.||.|-.|++.++.......... +|..+|.++.|+|++++||+++ ||.|++
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 76555556677899999998 99999999999999999998876666555 8999999999999999999998 999999
Q ss_pred EEccCCCeeeEEccC-------C-CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee---cCCC
Q 038802 248 WDLIGGGKMVYSMES-------H-NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR---FPAP 316 (532)
Q Consensus 248 wd~~~~~~~~~~~~~-------~-~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~ 316 (532)
||+.++ .+..++.+ . ...+..++|+|+ +..++..+.|+.|++|+..+++....+. +...
T Consensus 165 w~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk---------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 165 WDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPK---------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EEcccc-hhhhhcccCCccccccccceeeeeeecCC---------CCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 999876 44444332 1 456788999999 4567888889999999999999888776 3445
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 317 LMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 317 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
+..++|+|+|+|||+++.||.|.|||.++-
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 999999999999999999999999999963
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=199.68 Aligned_cols=280 Identities=19% Similarity=0.298 Sum_probs=229.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce-EEEEeecc-CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCce
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE-KHSAISSF-KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
-..+|.+++|+.+.+.||++-.+|.|-||++...- ....+.++ +..|-+++|++ +..|.+.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 35689999999999999999999999999998743 33344554 46899999995 45677777799999999999999
Q ss_pred EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe--ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 128 LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD--LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
...+....+.|++++.+| .+..++.|++||.+..++...++.... +...++.|.+++|+| ++..+++|+.||.|++
T Consensus 103 ~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRI 180 (691)
T ss_pred eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEE
Confidence 999999999999999999 888999999999888888887765543 344568999999999 8889999999999999
Q ss_pred EEcccCCceeEEEe-------cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCC
Q 038802 206 WDVRVENSKSVMEV-------NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 206 wd~~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
||...+........ ....-|+++.|-.++ .+++|. .|+|.+||...+ ..+..+..|.+.|.+++..++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~-- 256 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADN-- 256 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCC--
Confidence 99998766653322 123457888888665 455555 899999998877 888899999999999999988
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceE---E--EeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKV---T--HSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
+++++++|.|+.|.-|...+... . ..-.|...|.+++..++ .+++|+.|+.+.+-....
T Consensus 257 -------~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 257 -------EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -------CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 68999999999999998776533 1 11127778999999887 899999999988866544
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=186.08 Aligned_cols=247 Identities=17% Similarity=0.208 Sum_probs=201.1
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc---eEEEEeeccCceeEEEEEcc--CCCEEEEEcCCCCEEEEEC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL---EKHSAISSFKDVVTCSSFRP--DGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~ 122 (532)
..|.+.|..+...--|+.|+++++|++|+||...+. +.+.++.+|.++|..++|.. -|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 578999999888888999999999999999998653 56788999999999999987 8999999999999999998
Q ss_pred CCCc--eEEEecCCCCCEEEEEeecCC-CcEEEEEeCCCeEEEEECCCC---eEEEeccCCCCceEEEEEeCCC--C---
Q 038802 123 KSRT--PLRRLKSHTRPVRFVKYPFLD-KLHLVSGGDDGIVKFWDVAGE---SVVLDLFGHKDYVRCGDCSPVN--G--- 191 (532)
Q Consensus 123 ~~~~--~~~~~~~h~~~i~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~--~--- 191 (532)
++++ .......|...|++++|.|.+ +-.|++++.||.|.+.+.++. ........|.-.|++++|.|.. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8774 334556899999999999843 457889999999999988754 2233457899999999999841 2
Q ss_pred --------CEEEEEeCCCeEEEEEcccCCceeEE-EecCCCcEEEEEEecCC----CEEEEEc-CCeEEEEEccCCCe--
Q 038802 192 --------DMFVTGSYDHTVKLWDVRVENSKSVM-EVNHGKPIEDVMFLPSG----GLIATAG-GNSVKIWDLIGGGK-- 255 (532)
Q Consensus 192 --------~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~----~~l~~~~-d~~i~iwd~~~~~~-- 255 (532)
..|++|+.|..|+||+.....-.... ..+|..-|..++|.|.- ..+++++ ||++.||..+....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 46999999999999999875333222 33799999999999954 4799999 99999998763311
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
....++.....+..+.||.. ++.|+.++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~s---------Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLS---------GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEecc---------ccEEEEecCCcEEEEEEeC
Confidence 12233445678999999999 6789999999999999743
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.9e-24 Score=182.70 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=197.0
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC----ceEEEecCCCCCEEEEEee-cCCCcEEEEEeCCCeEEEEE
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR----TPLRRLKSHTRPVRFVKYP-FLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~~-~~~~~~l~s~s~dg~i~iwd 164 (532)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|. |.-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 568899999999999999999999999999996433 4666788999999999995 44688999999999999997
Q ss_pred CCC---------CeEEEeccCCCCceEEEEEeCC-CCCEEEEEeCCCeEEEEEcccCCceeEEEe------------cCC
Q 038802 165 VAG---------ESVVLDLFGHKDYVRCGDCSPV-NGDMFVTGSYDHTVKLWDVRVENSKSVMEV------------NHG 222 (532)
Q Consensus 165 ~~~---------~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------~~~ 222 (532)
-.. -....++......|+.+.|.|. -|-.+++++.||.++||+.-..-......+ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1234456677889999999994 356899999999999998754322222111 255
Q ss_pred CcEEEEEEecC---CCEEEEEcCC------eEEEEEccCCC---eeeEEccCCCcceEEEEEeccCCCCCccccccEEEE
Q 038802 223 KPIEDVMFLPS---GGLIATAGGN------SVKIWDLIGGG---KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILS 290 (532)
Q Consensus 223 ~~v~~i~~~~~---~~~l~~~~d~------~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s 290 (532)
.+..|+.|+|. ..+|+.|++. .+.||.....+ ..+.++.+|..+|++++|.|+-. ....+|++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G-----r~y~~lAv 244 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG-----RSYHLLAV 244 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC-----CceeeEEE
Confidence 67789999983 4588888854 89999876554 34566779999999999999842 12467999
Q ss_pred EecCCeEEEEECCC--------------------ceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 291 VALDGYMKVFDYGK--------------------MKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 291 ~~~dg~i~iwd~~~--------------------~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
++.|| |+||.+.. -+.+..+. |.+.|+.+.|+-.|..|++.+.||.|++|+..=
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99999 99999873 12233333 788999999999999999999999999998653
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.5e-24 Score=201.52 Aligned_cols=285 Identities=15% Similarity=0.144 Sum_probs=222.9
Q ss_pred CCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC--EEEEEcCCCCEEEE
Q 038802 43 KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS--LLAASDLSGLIQVF 120 (532)
Q Consensus 43 ~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~iw 120 (532)
....+.||.+.|.||...|.|.+|++|+.||+|+||.+.+|.++.++.. .+.|.|++|+|.+. .||++- ++.+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 3345689999999999999999999999999999999999999998865 67999999999664 444443 2234443
Q ss_pred ECCCC-------------------------------------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCC---CeE
Q 038802 121 DVKSR-------------------------------------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD---GIV 160 (532)
Q Consensus 121 d~~~~-------------------------------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d---g~i 160 (532)
+..-| .-++..-.|...|..+.|+. .|.+|++...+ ..|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceE
Confidence 32111 01223335888999999998 99999997664 568
Q ss_pred EEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEE
Q 038802 161 KFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATA 240 (532)
Q Consensus 161 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 240 (532)
.|+++.......-|....+.|.++.|+| ...+|++++. ..|++||+.......... .....|.+++.+|.|.-|+.+
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEe
Confidence 9999987766666666778899999999 6666666665 579999998743333333 456688999999999988888
Q ss_pred c-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE------CCCceEE---Ee
Q 038802 241 G-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD------YGKMKVT---HS 310 (532)
Q Consensus 241 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd------~~~~~~~---~~ 310 (532)
+ |+.+..||+.-..++..++.-|...+++++|++. -.++++|+.||++.||- +.....+ ..
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r---------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR---------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc---------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 8 9999999998777899999999999999999988 67899999999999984 2222222 22
Q ss_pred ee-c----CCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 311 MR-F----PAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 311 ~~-~----~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+. | ...|..+.|+|...+|++++.||.|++|.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 22 2 24588999999999999999999999983
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=9.8e-23 Score=194.09 Aligned_cols=276 Identities=16% Similarity=0.183 Sum_probs=204.1
Q ss_pred CCCCcccccccCCC---ccCccccCeeEEEEcCCCCeE-EEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCE
Q 038802 32 QTPESKYWSSFKPH---QIPGLVSSINSIVFSPTTSHL-FAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSL 107 (532)
Q Consensus 32 ~~~~~~~w~~~~~~---~~~~h~~~V~~i~~sp~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 107 (532)
.++.+.+|+.-... .+.++ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 86 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKI 86 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCE
Confidence 45677788754332 22333 446789999999976 4566789999999999888777765444 567899999997
Q ss_pred EEEE-cCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCC-eEEEEECCCCeEEEeccCCCCceEEEE
Q 038802 108 LAAS-DLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG-IVKFWDVAGESVVLDLFGHKDYVRCGD 185 (532)
Q Consensus 108 l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~ 185 (532)
++++ +.++.+++||+.+++.+..+.. ...+.+++|+| ++..+++++.++ .+.+||..+++....... .....+++
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 7655 5689999999998887777653 33468899999 888888888765 567789988877655432 23456789
Q ss_pred EeCCCCCEEE-EEeCCCeEEEEEcccCCceeEEEec----C--CCcEEEEEEecCCCEEEEE-c-CCeEEEEEccCCCee
Q 038802 186 CSPVNGDMFV-TGSYDHTVKLWDVRVENSKSVMEVN----H--GKPIEDVMFLPSGGLIATA-G-GNSVKIWDLIGGGKM 256 (532)
Q Consensus 186 ~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~----~--~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~ 256 (532)
|+| ++..++ ++..++.|++||+++++....+... + ......++|+|++++++++ + ++.+.+||+.++ +.
T Consensus 164 ~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~ 241 (300)
T TIGR03866 164 FTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EV 241 (300)
T ss_pred ECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cE
Confidence 999 888775 4456999999999986554433321 1 1123468899999975544 3 678999999876 54
Q ss_pred eEEccCCCcceEEEEEeccCCCCCccccccEEEEE-ecCCeEEEEECCCceEEEeeecCCCeeEEEEec
Q 038802 257 VYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV-ALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 324 (532)
...+ .+...+.+++|+|+ +.+|+++ +.+|.|++||+.+++++..++.....+.++++|
T Consensus 242 ~~~~-~~~~~~~~~~~~~~---------g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 242 LDYL-LVGQRVWQLAFTPD---------EKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEE-EeCCCcceEEECCC---------CCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 4443 23457889999999 4567665 569999999999999999999878889998875
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.8e-26 Score=218.12 Aligned_cols=234 Identities=21% Similarity=0.368 Sum_probs=213.8
Q ss_pred cccccccCCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCC
Q 038802 36 SKYWSSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSG 115 (532)
Q Consensus 36 ~~~w~~~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 115 (532)
.++|+. +.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.|+.|+++..+|++|+.+|
T Consensus 16 Lr~~~~---~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsasg 92 (825)
T KOG0267|consen 16 LRVWDT---REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASG 92 (825)
T ss_pred cccccc---hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCC
Confidence 346653 34567899999999877888999999999999999988888888999999999999999999999999999
Q ss_pred CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEE
Q 038802 116 LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFV 195 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 195 (532)
+|++||++..+.++++.+|...+..+.|+| -+.+.++|+.|+.+++||++...+.+.+.+|...|.++.|+| +|.+++
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~ 170 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVA 170 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceee
Confidence 999999999999999999999999999999 899999999999999999998889999999999999999999 999999
Q ss_pred EEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEec
Q 038802 196 TGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGR 274 (532)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 274 (532)
.|+.|.++++||...++....+. .|.+.+.++.|+|..-+++.|+ |+++++||+++. ..+.........|.+..|.|
T Consensus 171 ~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred ccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecC
Confidence 99999999999998876666655 6899999999999999999999 999999999987 77777777788999999999
Q ss_pred cC
Q 038802 275 VG 276 (532)
Q Consensus 275 ~~ 276 (532)
++
T Consensus 249 ~~ 250 (825)
T KOG0267|consen 249 DG 250 (825)
T ss_pred Cc
Confidence 94
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=8.2e-24 Score=201.41 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=230.2
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc--eEE-----EEeeccCceeEEEEEccCCCEEEEEcCCCCEEEE
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL--EKH-----SAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVF 120 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~--~~~-----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 120 (532)
.||.+.|+++.|+|.+..|++++.|.++.+|...+. --. ..+.+........-|+|+++.+++-+..|-.++|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 599999999999999999999999999999987653 211 1223334568899999999999999999999999
Q ss_pred ECCCC---ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC----eEEEeccCCCCceEEEEEeCCCCCE
Q 038802 121 DVKSR---TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE----SVVLDLFGHKDYVRCGDCSPVNGDM 193 (532)
Q Consensus 121 d~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~ 193 (532)
..+.. .....+.||.+.|.+++|+| .+.+|++.|.|.+-|++-.-.. ..+..-+.|...++|+++-+ ....
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~ 421 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQ 421 (764)
T ss_pred eccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCce
Confidence 84332 33445679999999999999 9999999999999999875422 12333356888999999987 5788
Q ss_pred EEEEeCCCeEEEEEccc-------------------------------------------CCc-----------------
Q 038802 194 FVTGSYDHTVKLWDVRV-------------------------------------------ENS----------------- 213 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~-------------------------------------------~~~----------------- 213 (532)
|++|.....+++|+... +..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 99999999999998510 000
Q ss_pred ---------------eeEEEecCCCcEEEEEEecCCCEEEEEc-C-----CeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 214 ---------------KSVMEVNHGKPIEDVMFLPSGGLIATAG-G-----NSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 214 ---------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
......+|+..|.+++.+|+++++|+++ . ..|++|+..+- ..+..+.+|.-.|+.++|
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEE
Confidence 0000136888999999999999999997 3 26999998776 666789999999999999
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCceE-EE----eeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV-TH----SMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
||+ +.+|++.|.|.++.+|....... .. .-.|..-|++++|+|++.+++|++.|..|++|.....
T Consensus 581 Spd---------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPD---------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCC---------CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999 78999999999999998754221 11 1227778999999999999999999999999999876
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.3e-23 Score=179.15 Aligned_cols=268 Identities=17% Similarity=0.253 Sum_probs=205.5
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC----ceEEEEeeccCceeEEEEEcc--CCCEEEEEcCCCCEEEE
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT----LEKHSAISSFKDVVTCSSFRP--DGSLLAASDLSGLIQVF 120 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iw 120 (532)
..+|.+-|.|+.|.+-|+.+|+|+.|++|+|||..+ ..+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 368999999999999999999999999999999543 455667788999999999976 58999999999999999
Q ss_pred ECCC---------CceEEEecCCCCCEEEEEeecC-CCcEEEEEeCCCeEEEEECCCCe------EEEecc-------CC
Q 038802 121 DVKS---------RTPLRRLKSHTRPVRFVKYPFL-DKLHLVSGGDDGIVKFWDVAGES------VVLDLF-------GH 177 (532)
Q Consensus 121 d~~~---------~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~-------~~ 177 (532)
.-.. .....++....+.|+++.|.|. -+-.+++++.||.++||+....- ..+.+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1234456667889999999984 35678999999999999875432 122222 35
Q ss_pred CCceEEEEEeCC--CCCEEEEEeCC-----CeEEEEEcccCCc--eeEE-EecCCCcEEEEEEecC----CCEEEEEc-C
Q 038802 178 KDYVRCGDCSPV--NGDMFVTGSYD-----HTVKLWDVRVENS--KSVM-EVNHGKPIEDVMFLPS----GGLIATAG-G 242 (532)
Q Consensus 178 ~~~v~~i~~~~~--~~~~l~s~s~d-----g~i~iwd~~~~~~--~~~~-~~~~~~~v~~i~~~~~----~~~l~~~~-d 242 (532)
..+..|+.|+|. ...+|+.|+.+ +.++||....... .... ..+|..+|++++|.|+ ..+||+++ |
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 667789999873 24688888876 4788887655331 1111 2279999999999995 34788888 7
Q ss_pred CeEEEEEccCC-------------------CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 243 NSVKIWDLIGG-------------------GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 243 ~~i~iwd~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
| |+||.+... -+.+..+.+|.+.|..+.|.-. +..|.+.|.||.|++|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------eeEEeecCCCceeeehhhh
Confidence 7 999998731 0345667899999999999988 6889999999999999753
Q ss_pred ---CceEEEeeecCCCeeEEEEec
Q 038802 304 ---KMKVTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 304 ---~~~~~~~~~~~~~v~~~~~s~ 324 (532)
.+++...++.++.+....|++
T Consensus 319 y~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 319 YNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred hhhhheeeeEEeccCCCCCccccc
Confidence 366777777666666655553
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-25 Score=219.87 Aligned_cols=285 Identities=18% Similarity=0.237 Sum_probs=224.6
Q ss_pred eEEEEcCCCC-eEEEEEe----------CCeEEEEeCC--Cce----EEEEeeccCceeEEEEEccCCCE----EEEEcC
Q 038802 55 NSIVFSPTTS-HLFAATH----------SASLTLFSSQ--TLE----KHSAISSFKDVVTCSSFRPDGSL----LAASDL 113 (532)
Q Consensus 55 ~~i~~sp~~~-~l~~~~~----------d~~v~i~~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~g~~ 113 (532)
..++|+|.+. ++++|+. +.++-||.+. +.. ....+. -....+.++|.+.|.. ||.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578999887 6666543 3455555442 222 222222 2457889999997765 888999
Q ss_pred CCCEEEEECCCC------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec--cCCCCceEEEE
Q 038802 114 SGLIQVFDVKSR------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL--FGHKDYVRCGD 185 (532)
Q Consensus 114 dg~i~iwd~~~~------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~ 185 (532)
||.|.+||...- ..+.++..|.+.|..+.|++..++.|++|+.||.|.|||+...+.-.+. ....+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998641 3456677899999999999977889999999999999999875544433 22567899999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCcEEEEEEecCCC-EEEEEc--CC--eEEEEEccCCCeeeEE
Q 038802 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSGG-LIATAG--GN--SVKIWDLIGGGKMVYS 259 (532)
Q Consensus 186 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~-~l~~~~--d~--~i~iwd~~~~~~~~~~ 259 (532)
|+......|++++.+|.+.|||+|..+.+..+... ....+..+.|+|++. .+++++ |+ .|.+||++....++..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 99867789999999999999999986544444322 224578999999764 455554 33 8999999988789999
Q ss_pred ccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCC-EEEEEecCCc
Q 038802 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCM-TRVIGTSNGT 337 (532)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~g~~dg~ 337 (532)
+.+|...|.++.|++.+ ..++++++.|+.|.+|+.++++.+..+. ....+..+.|+|..- .+++++-||.
T Consensus 249 ~~~H~~GilslsWc~~D--------~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQD--------PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred hcccccceeeeccCCCC--------chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 99999999999999985 6899999999999999999999999987 456789999999765 7888999999
Q ss_pred EEEEeecCccc
Q 038802 338 IFAGRRKKKEN 348 (532)
Q Consensus 338 i~iw~~~~~~~ 348 (532)
|.|+.+.+...
T Consensus 321 I~I~sl~~~~~ 331 (1049)
T KOG0307|consen 321 ISIYSLQGTDT 331 (1049)
T ss_pred eeeeeeecCCc
Confidence 99999988753
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-24 Score=196.56 Aligned_cols=269 Identities=19% Similarity=0.299 Sum_probs=214.6
Q ss_pred EEEEEeCCeEEEEeCCCceEEEEeeccC--ceeEEEEEccCCCEEEE--EcCCCCEEEEECCCC--ce--EEEecCCCCC
Q 038802 66 LFAATHSASLTLFSSQTLEKHSAISSFK--DVVTCSSFRPDGSLLAA--SDLSGLIQVFDVKSR--TP--LRRLKSHTRP 137 (532)
Q Consensus 66 l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~--~~--~~~~~~h~~~ 137 (532)
|.+++....+++||.........+..|+ ..+.+++|+.... |++ .+.|..+++|.-... +. +....+. .
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~ 81 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--N 81 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--h
Confidence 4455556789999987766555554443 3588899987664 443 355778899975432 11 1222222 2
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE
Q 038802 138 VRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217 (532)
Q Consensus 138 i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (532)
-.|++... ...++++|+..+.|+|||++...+.+.+.+|.+.|+++.++. .+.++|+++..|.|.+..+.++.....+
T Consensus 82 ~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 82 AFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccce
Confidence 34444433 457899999999999999997777778899999999999998 8899999999999999999987666666
Q ss_pred EecCCCcEEEEEEecCCCE-EEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC
Q 038802 218 EVNHGKPIEDVMFLPSGGL-IATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG 295 (532)
Q Consensus 218 ~~~~~~~v~~i~~~~~~~~-l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg 295 (532)
..+.+..|.-+.|+|..+. |.+++ +|.|.+||+........-.+.|..+...+||+|.. ..++++.|.|.
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn--------e~l~vsVG~Dk 231 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN--------EALLVSVGYDK 231 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc--------cceEEEecccc
Confidence 6666778889999997775 44555 79999999987755566667899999999999986 78999999999
Q ss_pred eEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 296 YMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
.|.+||....+....+....|..+++|+++|.+|++|+..|.|+.||+...+
T Consensus 232 ki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999999999988888899999999999999999999999999999998754
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=8.2e-24 Score=199.61 Aligned_cols=283 Identities=15% Similarity=0.185 Sum_probs=208.8
Q ss_pred EEEEcCC---CCeEEEEEeCCeEEEEeCCCceE------EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 56 SIVFSPT---TSHLFAATHSASLTLFSSQTLEK------HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 56 ~i~~sp~---~~~l~~~~~d~~v~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
+..|++. ...|+.+..+|.|.++|...... ......|.+.|..+.|.|....|++++.|.++++||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3666653 34788888999999999865332 24567899999999999977788899999999999999988
Q ss_pred eEEE--ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe---------------------------EEEeccCC
Q 038802 127 PLRR--LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES---------------------------VVLDLFGH 177 (532)
Q Consensus 127 ~~~~--~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------------------------~~~~~~~~ 177 (532)
+... +.+|.+.|.+++|.|.+...|++|+.||.|.|||++-.. .+..-..+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999999999999999999999986322 01111234
Q ss_pred CCceEE---EEEeCCCCCEEEEEeC-CCeEEEEEcccCCceeEEE------e-cC---CCcEEEEEEecCCCEEEEEc-C
Q 038802 178 KDYVRC---GDCSPVNGDMFVTGSY-DHTVKLWDVRVENSKSVME------V-NH---GKPIEDVMFLPSGGLIATAG-G 242 (532)
Q Consensus 178 ~~~v~~---i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~------~-~~---~~~v~~i~~~~~~~~l~~~~-d 242 (532)
...|.+ +.+.. |...||+++. |+.|++||++......... . .| ...+.++.....|.+|.+.+ |
T Consensus 214 s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred cCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 444444 44444 7888998888 9999999998753322111 1 12 34577788877777666555 9
Q ss_pred CeEEEEEccCCC-eeeEEccCCCcc--eEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe--eecCCCe
Q 038802 243 NSVKIWDLIGGG-KMVYSMESHNKT--VTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS--MRFPAPL 317 (532)
Q Consensus 243 ~~i~iwd~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v 317 (532)
+.|++|++.+.. .++..+.++... -..-..+|+ +.++++|+.|...++|.+.+.+.-.. ..|...|
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd---------~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD---------DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCC---------CceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 999999998653 344444443322 223345677 68999999999999999988554322 3377789
Q ss_pred eEEEEecCC-CEEEEEecCCcEEEEeecCccc
Q 038802 318 MSVAFSPDC-MTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 318 ~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
++++|.|.. .-+++++.|-.+++|++..+-.
T Consensus 364 t~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 364 TTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred EEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 999998753 3467779999999999976633
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=194.85 Aligned_cols=238 Identities=17% Similarity=0.220 Sum_probs=186.9
Q ss_pred CCeEEEEEeCCeEEEEeCCCc---------------------eEEEEeeccCceeEEEEEccC-CCEEEEEcCCCCEEEE
Q 038802 63 TSHLFAATHSASLTLFSSQTL---------------------EKHSAISSFKDVVTCSSFRPD-GSLLAASDLSGLIQVF 120 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iw 120 (532)
|+|+|.|+.+..|.|||+.-. +.-..-.+|++.|.+++|+.+ .+.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999997421 111112468899999999874 4688999999999999
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
|+.++++..++..|.+.|.++.|+|.....|++||.|++|.+.|.+........-...+.|-.++|.|.....+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999998899999999999999999985433333333567788999999888999999999
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecCC-CEEEEEc-CCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
|+++-+|+|+..........|..+|.++++++.. .++++++ ++.|++|++.... +.+..-...-+...|.++.|+-
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~- 430 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV- 430 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc-
Confidence 9999999998754444455899999999999854 4677777 8999999987542 1121111112235566666664
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceEE
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVT 308 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (532)
...++.|+..+.++|||+.+...+
T Consensus 431 -------a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 431 -------AFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred -------ceEEEecCccceEEEeecccChhH
Confidence 567889999999999998876543
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=185.64 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=185.4
Q ss_pred cCccccCeeEEEEcCCCC--eEEEEEeCCeEEEEeCCC----------------ceEEEEeeccCceeEEEEEccC-CCE
Q 038802 47 IPGLVSSINSIVFSPTTS--HLFAATHSASLTLFSSQT----------------LEKHSAISSFKDVVTCSSFRPD-GSL 107 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~--~l~~~~~d~~v~i~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~ 107 (532)
..+|.+.++.+.-++-++ +.++-+..|.|.||++.. .+++.++.+|...=+.++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 467889999998888664 445556789999999732 4567788899999999999992 235
Q ss_pred EEEEcCCCCEEEEECCCCceE---EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC---eEEEeccCCCCce
Q 038802 108 LAASDLSGLIQVFDVKSRTPL---RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE---SVVLDLFGHKDYV 181 (532)
Q Consensus 108 l~~g~~dg~i~iwd~~~~~~~---~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v 181 (532)
|++|..-+.|++|...++.-. ..+.+|+..|..++|+|.....|++||.||+|+|||++.+ .++. .+.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCce
Confidence 888888899999999886532 3456799999999999988899999999999999999987 3343 37899999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce---eEEEecCCCcEEEEEEecCC-CEEEEEc-CCeEEEEEccCCCe-
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK---SVMEVNHGKPIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGGK- 255 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~~- 255 (532)
+.+.|+. ...+|++|+.||+++|||+|+.+.. ..+. .|..+|+++.|+|.. ..+++++ |..|.+||+.....
T Consensus 306 NVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 306 NVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999998 6669999999999999999975432 2333 699999999999943 3444444 99999999863211
Q ss_pred --------------eeEEccCC--CcceEEEEEeccCCCCCccccccEEEEEecCCe
Q 038802 256 --------------MVYSMESH--NKTVTSVCVGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 256 --------------~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
+..-+.-| +..+..+.|++.. ..++++.+.||.
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi--------PG~lvsTa~dGf 432 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI--------PGLLVSTAIDGF 432 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCC--------CCeEEEecccce
Confidence 01111123 4467788888765 678999999984
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=186.70 Aligned_cols=243 Identities=19% Similarity=0.239 Sum_probs=193.3
Q ss_pred ccCceeEEEEEccC--CCEEEEEcCCCCEEEEECCC----------------CceEEEecCCCCCEEEEEeecCCCcEEE
Q 038802 91 SFKDVVTCSSFRPD--GSLLAASDLSGLIQVFDVKS----------------RTPLRRLKSHTRPVRFVKYPFLDKLHLV 152 (532)
Q Consensus 91 ~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~----------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~ 152 (532)
.|.+.++.+.-++- ..+.|+-+..|.|.||++.. .+++.++.+|.+.-..++|+|.....++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 46667777776664 44566667889999999842 2467788899999999999996666799
Q ss_pred EEeCCCeEEEEECCCCeEE---EeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC-ceeEEEecCCCcEEEE
Q 038802 153 SGGDDGIVKFWDVAGESVV---LDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVNHGKPIEDV 228 (532)
Q Consensus 153 s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i 228 (532)
+|..-+.|++|...++.-. ..+.+|+..|-.++|+|.....|++||.||+|+|||+|.+. ...+....|.+.|+-|
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 9988999999998876532 23567999999999999888999999999999999999873 3455556899999999
Q ss_pred EEecCCCEEEEEc-CCeEEEEEccCC--CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 229 MFLPSGGLIATAG-GNSVKIWDLIGG--GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 229 ~~~~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
.|+....+|++|+ ||+++|||++.. ++++..++-|..+|+++.|+|.. ...++++|.|.+|.+||+.--
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e--------~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE--------DSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc--------CceEEeccCCCcEEEEEeecc
Confidence 9999888999999 799999999853 47889999999999999999985 678999999999999998531
Q ss_pred -------------------eEEEeeecCCCeeEEEEecCC-CEEEEEecCCcEEEEe
Q 038802 306 -------------------KVTHSMRFPAPLMSVAFSPDC-MTRVIGTSNGTIFAGR 342 (532)
Q Consensus 306 -------------------~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~ 342 (532)
+++..-.....+..+.|++.- .++++.+.|| +.||.
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111111233467788898763 4677777777 44443
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.1e-24 Score=197.90 Aligned_cols=254 Identities=17% Similarity=0.258 Sum_probs=211.1
Q ss_pred CCCcccccccCCCc------c--CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceE--EEEeeccCceeEEEEEc
Q 038802 33 TPESKYWSSFKPHQ------I--PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEK--HSAISSFKDVVTCSSFR 102 (532)
Q Consensus 33 ~~~~~~w~~~~~~~------~--~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~ 102 (532)
.+-+++|+.-.+.. + ..-..-|.++.+.|||+.|++|+.-.++.|||+..... ...+....-..++++.+
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s 518 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 518 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC
Confidence 45678998655422 2 22356789999999999999999999999999976443 33344434567889999
Q ss_pred cCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE
Q 038802 103 PDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR 182 (532)
Q Consensus 103 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 182 (532)
||.+..+++..||.|.|||+.+...++.|++|.+.+.||..++ ++..|.+|+-|.+|+.||++++..+.... ....|.
T Consensus 519 pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIf 596 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIF 596 (705)
T ss_pred CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhhe
Confidence 9999999999999999999999999999999999999999998 99999999999999999999988766543 567899
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc
Q 038802 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME 261 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~ 261 (532)
++.++| ++++++.|-.++.+.+..... ........|.+-|.++.|.+.|+++++.+ |+.+..|...-+.. +....
T Consensus 597 SLg~cP-~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas-iFqsk 672 (705)
T KOG0639|consen 597 SLGYCP-TGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSK 672 (705)
T ss_pred ecccCC-CccceeeecccCcEEEEecCC--ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc-eeecc
Confidence 999999 999999999999998887665 33334446899999999999999999999 99999999877633 43332
Q ss_pred CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 262 SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 262 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
..+.|.++.++.+ ..++++|+.|..-.||.+
T Consensus 673 -E~SsVlsCDIS~d---------dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFD---------DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccC---------ceEEEecCCCcceEEEEE
Confidence 3568999999988 789999999988888764
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=3.6e-23 Score=185.49 Aligned_cols=297 Identities=19% Similarity=0.246 Sum_probs=229.1
Q ss_pred cccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCCc---------eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEE
Q 038802 50 LVSSINSIVFSPTTS-HLFAATHSASLTLFSSQTL---------EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQV 119 (532)
Q Consensus 50 h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 119 (532)
...+|.++.|.+++. .+++|+.|..|+||-+... +....+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 356899999999877 9999999999999976432 234456789999999999999999999999999999
Q ss_pred EECC--------C--------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 120 FDVK--------S--------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 120 wd~~--------~--------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
|... + ....+.+.+|...|..++|+| ++.++++++-|..+++||+..|+....+..|...+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 9765 2 123456678999999999999 9999999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE------------------EecCCC----cEEEEEEecCCCEEEEEc
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM------------------EVNHGK----PIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------~~~~~~----~v~~i~~~~~~~~l~~~~ 241 (532)
++|.| .++++++-+.|...+.+++......... ..-|+. -...++|+|+|.++++..
T Consensus 171 vawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 171 VAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999 8899999999887777766432211111 111221 235678999999998764
Q ss_pred -----CC-----eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCC----CCc----cccccEEEEEecCCeEEEEECC
Q 038802 242 -----GN-----SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNE----SGE----EAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 242 -----d~-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~----~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
++ ..++|+-....++...+.+...+...+.++|---. ... .--...+++......|.+||.+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 22 34666655555677777777777777777764210 000 0012334444455689999999
Q ss_pred CceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 304 KMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 304 ~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+..++.... |-.+|+.++|++||.+++..+.||...+-.+.+.+.
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 988777665 668999999999999999999999999888877654
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=6.2e-23 Score=178.59 Aligned_cols=272 Identities=17% Similarity=0.272 Sum_probs=214.3
Q ss_pred eeEEEEcCCCCeEEEEEeCCeEEEEeCCCc------------eEEEEe-eccCceeEEEEEc-------cCCCEEEEEcC
Q 038802 54 INSIVFSPTTSHLFAATHSASLTLFSSQTL------------EKHSAI-SSFKDVVTCSSFR-------PDGSLLAASDL 113 (532)
Q Consensus 54 V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~------------~~~~~~-~~~~~~v~~~~~~-------~~~~~l~~g~~ 113 (532)
...+.|+|||..+++-+.|..+.+|++... +....+ ......|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 457899999999999999999999997421 011111 1124678888885 57789999999
Q ss_pred CCCEEEEECCCCceEEEecC--CCC---CEEEEEeecCCCcEEEEEeCCCeEEEEEC-CCCeE--EEec-----cCCCCc
Q 038802 114 SGLIQVFDVKSRTPLRRLKS--HTR---PVRFVKYPFLDKLHLVSGGDDGIVKFWDV-AGESV--VLDL-----FGHKDY 180 (532)
Q Consensus 114 dg~i~iwd~~~~~~~~~~~~--h~~---~i~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~--~~~~-----~~~~~~ 180 (532)
+.-|++||.-+|+....+.+ |.. .-.+++|+| ++.+|++| ....|+++|+ +.|.. +... .+..+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999988777764 333 346899999 99888876 4689999999 44432 1111 234778
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeE
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVY 258 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~ 258 (532)
+.|++|+|.+...++.|++..++-||.-....+.... .+|.+.|+.++|.++|+.|.+|. +..|-.||++....++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 9999999988889999999999888876654444444 48999999999999999999998 78999999998888899
Q ss_pred EccCCCc-ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC-ceEEEeee-cCCCeeEEEEecCCCEEEEEecC
Q 038802 259 SMESHNK-TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK-MKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 259 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
.+..|.. .-..|.|.-+.. +..|++|+.||.|++||+++ +..+..+. +...++.++++|--..+++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~-------~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPK-------GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCC-------CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9988887 666777765532 78999999999999999998 66555554 77899999999997777776654
No 149
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=9.5e-24 Score=201.32 Aligned_cols=243 Identities=22% Similarity=0.304 Sum_probs=207.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc---CCCEEEEEcCCCCEEEEECCC-C
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP---DGSLLAASDLSGLIQVFDVKS-R 125 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~-~ 125 (532)
....|.+++.+|+|++||+|...|.++||++.+.+....+..|...|.|+.|+. ..++||+++.|..|+|||+.. .
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 345799999999999999999999999999999999999999999999999986 457999999999999999964 4
Q ss_pred ceEEEecCCCCCEEEEEeecCCC--cEEEEEeCCCeEEEEECCCCeEEEecc-----CCCCceEEEEEeCCCCCEEEEEe
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDK--LHLVSGGDDGIVKFWDVAGESVVLDLF-----GHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
.++.++.+|...|+++.|.. ++ ..+++++.|..|.+--.+....-..+. .....+..+++.| +..++++++
T Consensus 538 ~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~c 615 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVC 615 (1080)
T ss_pred chhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEe
Confidence 67788999999999999986 44 678999999887653332111111111 1234678899999 899999999
Q ss_pred CCCeEEEEEcccCCceeEEEe--cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEecc
Q 038802 199 YDHTVKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRV 275 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 275 (532)
.|..|+|||+.+++....+.- .|.+....+...|.|.|++++. |.++.++|..++ +++..+.+|...|+.+.|.+|
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeeccc
Confidence 999999999999888877764 4566778899999999999988 999999999988 899999999999999999999
Q ss_pred CCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 276 GNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 276 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
.+.|++.+.||.|.||.+..
T Consensus 695 ---------CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 ---------CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---------chhheeecCCceEEEEECch
Confidence 78999999999999998754
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=196.62 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=212.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK 132 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 132 (532)
.|..++|-|||..|+.+. +..+.+||...|....++++|.+.|+|++|+.||+.+|+|+.|..|.+|+-.-.. +..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-
Confidence 899999999999888776 5789999999999999999999999999999999999999999999999865322 2233
Q ss_pred CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC
Q 038802 133 SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 133 ~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 212 (532)
.|.+.|.|+.|+| -...+++++-. ..-+|....... ...+ ....+.+++|.. +|.+++.|-.||+|.+-+-.. +
T Consensus 91 SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~g-E 164 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTN-DGQYLALGMFNGTISIRNKNG-E 164 (1081)
T ss_pred ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecC-CCcEEEEeccCceEEeecCCC-C
Confidence 5999999999999 78889988753 467887654332 2222 345677888988 999999999999999986543 3
Q ss_pred ceeEEEe--cCCCcEEEEEEecCC-----CEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcccc
Q 038802 213 SKSVMEV--NHGKPIEDVMFLPSG-----GLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 213 ~~~~~~~--~~~~~v~~i~~~~~~-----~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
....+.. +..++|.+++|+|.. ..+++.. +.++.+|.+.. +.+..-..-.-.-.|+.+.++
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~N--------- 233 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTN--------- 233 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccC---------
Confidence 3333332 467899999999953 3666666 66788887753 333322233334568888888
Q ss_pred ccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 285 QYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
+.+++.||.|+.+++|-- .|-.+.+.. .+..|++++..|++++++.|+.||+|-.|++-.
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 689999999999999974 444455544 678999999999999999999999999998754
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.1e-23 Score=188.49 Aligned_cols=262 Identities=21% Similarity=0.262 Sum_probs=205.7
Q ss_pred EeCCCceEEEEeeccCceeEEEEEccCC--CEEEEEcCCCCEEEEECCCC----ceEEEecCCCCCEEEEEeecCCCcEE
Q 038802 78 FSSQTLEKHSAISSFKDVVTCSSFRPDG--SLLAASDLSGLIQVFDVKSR----TPLRRLKSHTRPVRFVKYPFLDKLHL 151 (532)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~~~~~~~~l 151 (532)
+|+.+......+..+...|++++|+|.. +++|+|+..|+|-+||+.+. ..+..+..|.++|.++.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444445555667788999999999943 68999999999999999532 34566778999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEE--EeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEE
Q 038802 152 VSGGDDGIVKFWDVAGESVV--LDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVM 229 (532)
Q Consensus 152 ~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 229 (532)
++.|.||+|++-|+++...- .........+.++.|+. +...++.+..=|...+||+++.........-|...|.+++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 99999999999999876432 22333455677788887 5666666666679999999997665554456788999999
Q ss_pred EecCC-CEEEEEc-CCeEEEEEccCCC--e-eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC--
Q 038802 230 FLPSG-GLIATAG-GNSVKIWDLIGGG--K-MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY-- 302 (532)
Q Consensus 230 ~~~~~-~~l~~~~-d~~i~iwd~~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~-- 302 (532)
++|.. .++++++ |++.+|||++... . ++.....|...|.+..|||.+ +. |++.+.|..|+|||.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~--------gt-l~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG--------GT-LLTTCQDNEIRVFDSSC 400 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC--------Cc-eEeeccCCceEEeeccc
Confidence 99954 5788888 9999999998532 1 334555799999999999996 44 999999999999998
Q ss_pred --CCceEEEeeecCC------CeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 303 --GKMKVTHSMRFPA------PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 303 --~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
....+..++.|.. ......|.|+..++++|-.-..|-|++-..++.+
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence 4455566666543 2445689999999999999999999998887744
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=6e-24 Score=194.71 Aligned_cols=243 Identities=17% Similarity=0.262 Sum_probs=202.2
Q ss_pred CCCCCcccccccCC-Ccc----CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC
Q 038802 31 SQTPESKYWSSFKP-HQI----PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG 105 (532)
Q Consensus 31 ~~~~~~~~w~~~~~-~~~----~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 105 (532)
..+.-+++|..-.+ .++ ....+.-.|++......|+++|+..+.|+|||++...+++.+++|.+.|+++.++...
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D 133 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD 133 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc
Confidence 34555667765433 111 1112234455555555899999999999999999888889999999999999999999
Q ss_pred CEEEEEcCCCCEEEEECCCCceEEEecCC-CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-cCCCCceEE
Q 038802 106 SLLAASDLSGLIQVFDVKSRTPLRRLKSH-TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGHKDYVRC 183 (532)
Q Consensus 106 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~ 183 (532)
.|||+++..|.|.|..+.++.....|... ...|.-+.|+|....+|.+++++|.|.+||+....++..+ ..|..+...
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~g 213 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRG 213 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCc
Confidence 99999999999999999998877777644 3456689999977778889999999999999988777665 679999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccC
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~ 262 (532)
|+|+|.+..+|++.+.|+.|.+||++.......+ ....|..+++|+++|.+|++|. .|.|..||++....++..+..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ceecCCccceEEEecccceEEEeeccccccccee--eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 9999988999999999999999999974444443 4456889999999999999998 899999999998899999999
Q ss_pred CCcceEEEEEecc
Q 038802 263 HNKTVTSVCVGRV 275 (532)
Q Consensus 263 ~~~~i~~~~~~~~ 275 (532)
|...|++++|-+.
T Consensus 292 h~~sVt~vafq~s 304 (673)
T KOG4378|consen 292 HDASVTRVAFQPS 304 (673)
T ss_pred cccceeEEEeeec
Confidence 9999999999876
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-23 Score=179.88 Aligned_cols=207 Identities=18% Similarity=0.321 Sum_probs=173.0
Q ss_pred cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe------------EE---EeccCCCCceEEEEEeCCCCCEEEE
Q 038802 132 KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES------------VV---LDLFGHKDYVRCGDCSPVNGDMFVT 196 (532)
Q Consensus 132 ~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~---~~~~~~~~~v~~i~~~~~~~~~l~s 196 (532)
..|.+.|+++...+..+.++++|+.||.|.+||+++.. ++ ..-.+|.-.|.++.|.|.+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999999899999999999999999997543 11 1124688899999999999999999
Q ss_pred EeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecC---CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 197 GSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS---GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
++.|.++++||..+. .....+..++.|.+-+++|- ..++++|. |-.|++.|+.++ ...+++.+|...|.++.|
T Consensus 120 sSFDhtlKVWDtnTl--Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL--QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccc--eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEe
Confidence 999999999999984 44444566788999999983 33667776 669999999988 889999999999999999
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCc-eEEEee---------------ecCCCeeEEEEecCCCEEEEEecCC
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKM-KVTHSM---------------RFPAPLMSVAFSPDCMTRVIGTSNG 336 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~---------------~~~~~v~~~~~s~~~~~l~~g~~dg 336 (532)
+|.. ...|++|+.||.|++||++.. -+...+ .|.+.|.+++|+.||.++++.+.|.
T Consensus 197 sp~~--------e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 197 SPSS--------EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ccCc--------eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9986 678999999999999998753 222221 2556899999999999999999999
Q ss_pred cEEEEeecCcccc
Q 038802 337 TIFAGRRKKKENV 349 (532)
Q Consensus 337 ~i~iw~~~~~~~~ 349 (532)
.+++|+..+++..
T Consensus 269 r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 269 RIRVWNMESGRNT 281 (397)
T ss_pred ceEEeecccCccc
Confidence 9999999888654
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=186.64 Aligned_cols=243 Identities=14% Similarity=0.188 Sum_probs=203.3
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc-eEEEecCC-CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-PLRRLKSH-TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV 170 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h-~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 170 (532)
..+|.+++|+.+.+.||++-.+|.|-+|++..+- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.++++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 5789999999999999999999999999998753 33344444 5789999999 466799999999999999999999
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCcEEEEEEecCCCEEEEEc-CCeEEEE
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSGGLIATAG-GNSVKIW 248 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~-d~~i~iw 248 (532)
...+....+.|.+++.+| .+..++.|+.||.+..++...+.......+. ..+.|.+++|+|++..+++|+ ||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999999999999999999 8899999999997777777664443333333 458899999999999999998 9999999
Q ss_pred EccCCCeee-E-----EccC-CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEE
Q 038802 249 DLIGGGKMV-Y-----SMES-HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSV 320 (532)
Q Consensus 249 d~~~~~~~~-~-----~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 320 (532)
|...+.... . .+.. ...-|+++.+-.+ ..+++|...|+|.+||...+.++..+. |...|.++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd----------~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD----------STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeec----------CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 998774332 0 1111 2335778888765 479999999999999999999999888 88999999
Q ss_pred EEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 321 AFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 321 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+..+++.++++++.|+.|.-+...+...
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999999988755
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=3.9e-22 Score=190.10 Aligned_cols=306 Identities=18% Similarity=0.326 Sum_probs=242.4
Q ss_pred CCCCCCcccccccCC----------CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC---ceEEEEeeccCcee
Q 038802 30 LSQTPESKYWSSFKP----------HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT---LEKHSAISSFKDVV 96 (532)
Q Consensus 30 ~~~~~~~~~w~~~~~----------~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~v 96 (532)
.+.+...-+|+.-.. -...|..+......|+|+++.+++-+..|..++|...+ ......+.+|.+.|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 456677777775443 22345566799999999999999999999999998332 23445568999999
Q ss_pred EEEEEccCCCEEEEEcCCCCEEEEECCC----CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC-----
Q 038802 97 TCSSFRPDGSLLAASDLSGLIQVFDVKS----RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG----- 167 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----- 167 (532)
..++|+|.|.+|++.+.|.+-++|-.-. ...+..-+-|...++|++|-+ ....+++|.+...+|+|+...
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~ 443 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKS 443 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHH
Confidence 9999999999999999999999986541 123444456888999999987 577899999999999998520
Q ss_pred --------------------------------------CeE---------------------------------EEeccC
Q 038802 168 --------------------------------------ESV---------------------------------VLDLFG 176 (532)
Q Consensus 168 --------------------------------------~~~---------------------------------~~~~~~ 176 (532)
|.. ++.+.+
T Consensus 444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG 523 (764)
T KOG1063|consen 444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG 523 (764)
T ss_pred HHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc
Confidence 000 123458
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCC-----eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEc
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDH-----TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDL 250 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~ 250 (532)
|...|.+++.+| +++++|+++... .|++|+..+......+. .|.-.|+.++|||||++|++.+ |.++.+|..
T Consensus 524 HGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 524 HGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred CceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 999999999999 999999987653 59999988866555443 8999999999999999999999 999999997
Q ss_pred cCCCee---eEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc--eEEE---eeecCCCeeEEEE
Q 038802 251 IGGGKM---VYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM--KVTH---SMRFPAPLMSVAF 322 (532)
Q Consensus 251 ~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~---~~~~~~~v~~~~~ 322 (532)
...... ....+.|..-|+++.|+|+ +.+++|+|.|.+|++|..... +.+. ..++..+|+++++
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pd---------e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPD---------EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcc---------cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 654332 2337789999999999999 678999999999999998876 4333 3457889999999
Q ss_pred ecC-----CCEEEEEecCCcEEEEeecCcc
Q 038802 323 SPD-----CMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 323 s~~-----~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
.|- +..+++|...|.|.+|+.+...
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred eccccccccceEEEEecccEEEEEeccccc
Confidence 763 3478999999999999987554
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1e-22 Score=176.59 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=190.6
Q ss_pred eEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc
Q 038802 96 VTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF 175 (532)
Q Consensus 96 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 175 (532)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++ ++..|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999988888999999999999999 99999999999999999999999988887
Q ss_pred CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC----CcEEEEEEecCCCEEEEEc-CCeEEEEEc
Q 038802 176 GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG----KPIEDVMFLPSGGLIATAG-GNSVKIWDL 250 (532)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~-d~~i~iwd~ 250 (532)
...+|..+.|+|.+.+.+++.-.+..-.+-++..+... .+..... ..-.+..|.+.|+++++|. .|.+.++|.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 67899999999977776666655555556665542222 1111111 1222345889999999998 799999999
Q ss_pred cCCCeeeEEccCCC-cceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC-------ceEE--Eeee---cCCCe
Q 038802 251 IGGGKMVYSMESHN-KTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK-------MKVT--HSMR---FPAPL 317 (532)
Q Consensus 251 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~--~~~~---~~~~v 317 (532)
.+. +++..+.-.. ..|..+.++.. +..++.-+.|..|+.|+++. +++. +.+. ....-
T Consensus 183 ~t~-e~vas~rits~~~IK~I~~s~~---------g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 183 ETL-ECVASFRITSVQAIKQIIVSRK---------GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred chh-eeeeeeeechheeeeEEEEecc---------CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 887 7777776555 67889999888 68999999999999999874 1221 1111 12344
Q ss_pred eEEEEecCCCEEEEEecC-CcEEEEeecCcccc
Q 038802 318 MSVAFSPDCMTRVIGTSN-GTIFAGRRKKKENV 349 (532)
Q Consensus 318 ~~~~~s~~~~~l~~g~~d-g~i~iw~~~~~~~~ 349 (532)
.+++||.+|.|+++|+.. ..++||....+.-+
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCccee
Confidence 678999999999988754 45999999887544
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.3e-23 Score=205.31 Aligned_cols=248 Identities=17% Similarity=0.280 Sum_probs=205.3
Q ss_pred cccCeeEEEEcCCCCe----EEEEEeCCeEEEEeCCCc------eEEEEeeccCceeEEEEEccCC-CEEEEEcCCCCEE
Q 038802 50 LVSSINSIVFSPTTSH----LFAATHSASLTLFSSQTL------EKHSAISSFKDVVTCSSFRPDG-SLLAASDLSGLIQ 118 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~----l~~~~~d~~v~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~ 118 (532)
-....+.++|.+.|.. ++.|..||.|.+||.... ..+.+...|++.|..+.|++.. ++||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 4457789999998876 788889999999997652 3455667899999999999955 5999999999999
Q ss_pred EEECCCCceEEEe--cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCC--ceEEEEEeCCCCCEE
Q 038802 119 VFDVKSRTPLRRL--KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKD--YVRCGDCSPVNGDMF 194 (532)
Q Consensus 119 iwd~~~~~~~~~~--~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l 194 (532)
|||+...+.-..+ ....+.|.+++|+......|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|.+...+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875443333 224678999999987788899999999999999999888877765554 477899999777788
Q ss_pred EEEeCCC---eEEEEEcccCCceeEEEecCCCcEEEEEEecCC-CEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEE
Q 038802 195 VTGSYDH---TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTS 269 (532)
Q Consensus 195 ~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 269 (532)
++++.|. .|.+||+|...........|...|.++.|++.+ .++++++ |+.|.+|+..++ +.+..+......+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceee
Confidence 8887765 599999997554444445899999999999966 7888888 999999999987 888999888889999
Q ss_pred EEEeccCCCCCccccccEEEEEecCCeEEEEECCCce
Q 038802 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMK 306 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 306 (532)
+.|+|.. ...+++++.||.|.||.+.+..
T Consensus 302 v~w~pr~--------P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRN--------PSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCC--------cchhhhheeccceeeeeeecCC
Confidence 9999986 6789999999999999987643
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=190.46 Aligned_cols=263 Identities=14% Similarity=0.195 Sum_probs=197.2
Q ss_pred CCCCCcccccccCC---------CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEE--eeccCceeEEE
Q 038802 31 SQTPESKYWSSFKP---------HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSA--ISSFKDVVTCS 99 (532)
Q Consensus 31 ~~~~~~~~w~~~~~---------~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~v~~~ 99 (532)
..++.+.+++.-.. .....|.+.|..+.|-|....|++++.|.++++||+.+.+.... +.+|...|.++
T Consensus 71 dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~ 150 (720)
T KOG0321|consen 71 DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSE 150 (720)
T ss_pred cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchh
Confidence 35666666653211 22367999999999999777899999999999999999888777 88999999999
Q ss_pred EEcc-CCCEEEEEcCCCCEEEEECCCCc---------------------------eEEEecCCCCCE----EEEEeecCC
Q 038802 100 SFRP-DGSLLAASDLSGLIQVFDVKSRT---------------------------PLRRLKSHTRPV----RFVKYPFLD 147 (532)
Q Consensus 100 ~~~~-~~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~~~i----~~~~~~~~~ 147 (532)
+|.| |...+++|+.||.|.|||+.-.. .+.....+...| +.+.| . |
T Consensus 151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-D 228 (720)
T KOG0321|consen 151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-D 228 (720)
T ss_pred hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-c
Confidence 9999 45678899999999999985321 011112333344 44545 4 7
Q ss_pred CcEEEEEeC-CCeEEEEECCCCeEEEe--------ccCC---CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCcee
Q 038802 148 KLHLVSGGD-DGIVKFWDVAGESVVLD--------LFGH---KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS 215 (532)
Q Consensus 148 ~~~l~s~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 215 (532)
...|+++|. |+.|+|||++....... +..| .-.+.++.... .|.++++.+.|+.|++||+.+.....
T Consensus 229 e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 229 ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCc
Confidence 888999888 99999999987543322 2223 33466777766 66777777779999999998755444
Q ss_pred EEEecCC---CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEE
Q 038802 216 VMEVNHG---KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 216 ~~~~~~~---~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
...+.+. .--..-..+|++.++++++ |...++|.+.+.......+.+|...|++++|.|.. -.-++++
T Consensus 308 ~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~--------~t~v~Tc 379 (720)
T KOG0321|consen 308 VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA--------TTPVATC 379 (720)
T ss_pred hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc--------CCCceee
Confidence 4332211 1112235689999999999 99999999998877888889999999999999975 4568888
Q ss_pred ecCCeEEEEECCC
Q 038802 292 ALDGYMKVFDYGK 304 (532)
Q Consensus 292 ~~dg~i~iwd~~~ 304 (532)
+.|..+++|++.+
T Consensus 380 SdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 380 SDDFRVKIWRLSN 392 (720)
T ss_pred ccCcceEEEeccC
Confidence 9999999999865
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=172.28 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=182.8
Q ss_pred EeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc-----eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEE
Q 038802 88 AISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-----PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKF 162 (532)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~i 162 (532)
.+++|.+.|++++|+.||++||+++.|++|++|++.... +++.- -.-+..+.+.|.|+....++++-...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 467899999999999999999999999999999997532 12111 112345788999966666777777788999
Q ss_pred EECCCC---eEEE---------eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEE
Q 038802 163 WDVAGE---SVVL---------DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMF 230 (532)
Q Consensus 163 wd~~~~---~~~~---------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 230 (532)
|.+... .... .-..|...+..+-... ++.++++++.|..|.+||++ ++....+. .....-+..+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aav 236 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAV 236 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceee
Confidence 987432 1111 1123666676777666 78999999999999999998 44444433 23344567889
Q ss_pred ecCCCEEEEEc-CCeEEEEEccCCC-------eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 231 LPSGGLIATAG-GNSVKIWDLIGGG-------KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 231 ~~~~~~l~~~~-d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
||+|+++++++ .-.|++|.+--+. ..+..+.+|...|..++|+++ ..++++.+.||++++||.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeec
Confidence 99999999999 7889999864211 345778899999999999999 789999999999999997
Q ss_pred CC-------ceEEEeee-----cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 303 GK-------MKVTHSMR-----FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 303 ~~-------~~~~~~~~-----~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+- .+.+.... ..+....++++|.|+.|+.+. ...+.++...+++..
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDY 365 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccc
Confidence 53 12222221 123344899999999888754 447898888877654
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-22 Score=174.62 Aligned_cols=270 Identities=16% Similarity=0.215 Sum_probs=197.0
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc--CCCEEEEEcCCCCEEEEECCCCceEE--EecCCC-CCE
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP--DGSLLAASDLSGLIQVFDVKSRTPLR--RLKSHT-RPV 138 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~-~~i 138 (532)
..+|++.+.|.|++||..+++.+..++++...++.+.|.. .+..+.+|+.||+|++||+++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888999999999999999999999999999999987 46788899999999999998765443 344455 456
Q ss_pred EEEEeecCCCcEEEEEe----CCCeEEEEECCCCeE-EEec-cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC
Q 038802 139 RFVKYPFLDKLHLVSGG----DDGIVKFWDVAGESV-VLDL-FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 212 (532)
.|++-+. ..+.+++|+ .|-.|.+||++..+. +..+ ..|.+.|+++.|+|.++++|++||.||.|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666654 566677765 367899999998776 5444 56999999999999999999999999999999997642
Q ss_pred c--eeEEEecCCCcEEEEEEecCC--CEEEEEcCCeEEEEEccCCCeeeEEccCCCc------ceEE----E-EEeccCC
Q 038802 213 S--KSVMEVNHGKPIEDVMFLPSG--GLIATAGGNSVKIWDLIGGGKMVYSMESHNK------TVTS----V-CVGRVGN 277 (532)
Q Consensus 213 ~--~~~~~~~~~~~v~~i~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~i~~----~-~~~~~~~ 277 (532)
. .....+.+...|.++.|..++ ++.+....++..+|++..+. +...+....- .... + +.+|.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~- 277 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHSPGD- 277 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeecccCCC-
Confidence 2 233345788899999999887 65555558999999998773 3333321100 0000 1 112222
Q ss_pred CCCccccccEEEEEec-CCeEEEEECC---CceE---EEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 278 ESGEEAMQYRILSVAL-DGYMKVFDYG---KMKV---THSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~-dg~i~iwd~~---~~~~---~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
....+.++. -|...++-+. ++.. +..+. |..-|.++.|...+.++++|+.||.+.+|..
T Consensus 278 -------~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 -------KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred -------cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 334444443 5666665443 3322 22222 4456888899888999999999999999996
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-21 Score=184.84 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=101.0
Q ss_pred CccCccccCeeEEEEcCCC-CeEEEEEeCCeEEEEeCCCceEEE------EeeccCceeEEEEEccCCCEEEEEcCCCCE
Q 038802 45 HQIPGLVSSINSIVFSPTT-SHLFAATHSASLTLFSSQTLEKHS------AISSFKDVVTCSSFRPDGSLLAASDLSGLI 117 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~-~~l~~~~~d~~v~i~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 117 (532)
..+.+|.+.|+.+.|+|-. .+||+|+.|..|+||.+..+.... .+.+.+-.|-|+.|+|...-|...+..|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 3467899999999999944 488999999999999987432211 122334578999999966656666668999
Q ss_pred EEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC
Q 038802 118 QVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 166 (532)
+|||+.+++.+..+.+|...|.+..|+. ++..+++++.|..|+|||.+
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEEEcccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCc
Confidence 9999999999999999999999999998 99999999999999999975
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=5.7e-21 Score=164.10 Aligned_cols=277 Identities=15% Similarity=0.159 Sum_probs=207.7
Q ss_pred CeeEEEEcC--CC-CeEEEEEe----CCeEEEEeC--CCceEEEEe-eccCceeEEEEEccCC-----CEEEEEcCCCCE
Q 038802 53 SINSIVFSP--TT-SHLFAATH----SASLTLFSS--QTLEKHSAI-SSFKDVVTCSSFRPDG-----SLLAASDLSGLI 117 (532)
Q Consensus 53 ~V~~i~~sp--~~-~~l~~~~~----d~~v~i~~~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~g~~dg~i 117 (532)
++.++.|+. +. .++|.|+. .+.|.|..+ .+++.+..- ..|.-+++.+.|.|+. ++||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 577888883 33 36777774 456666543 344443322 3577899999999976 3566654 469
Q ss_pred EEEECCCC--ce--EEE-----ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe---EEEeccCCCCceEEEE
Q 038802 118 QVFDVKSR--TP--LRR-----LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES---VVLDLFGHKDYVRCGD 185 (532)
Q Consensus 118 ~iwd~~~~--~~--~~~-----~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~ 185 (532)
++|.+... +. ... -..+.+++++..|+..+.+++.++|-|-+..|||++++. ....+..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99998632 11 111 124678999999998899999999999999999999863 3445678999999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE-ecC-CCcEEEEEEecC-CCEEEEEc-C-CeEEEEEccCCCeeeEEc
Q 038802 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME-VNH-GKPIEDVMFLPS-GGLIATAG-G-NSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 186 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~~v~~i~~~~~-~~~l~~~~-d-~~i~iwd~~~~~~~~~~~ 260 (532)
|....-+.|++.+.||.+++||+|......++. .+. ..+...++|++. -+++|+-. | ..|.|.|++....++..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 998556899999999999999999854433332 222 567888999984 45777766 4 689999999988999999
Q ss_pred cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCce------EEEeeecCCCeeEEEEecC-CCEEEEEe
Q 038802 261 ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMK------VTHSMRFPAPLMSVAFSPD-CMTRVIGT 333 (532)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~v~~~~~s~~-~~~l~~g~ 333 (532)
.+|.+.|+.++|.|.. ...++++|.|..+.+||+...- ++-.+...+.|+.+.|++. +..++.+.
T Consensus 284 ~~H~a~VNgIaWaPhS--------~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHS--------SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccccceEecCCC--------CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 9999999999999986 7899999999999999997632 2333446678999999964 45666554
Q ss_pred cCCcEEE
Q 038802 334 SNGTIFA 340 (532)
Q Consensus 334 ~dg~i~i 340 (532)
++.+.+
T Consensus 356 -~kklei 361 (364)
T KOG0290|consen 356 -GKKLEI 361 (364)
T ss_pred -cCeeeE
Confidence 334433
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=4.6e-21 Score=164.51 Aligned_cols=270 Identities=18% Similarity=0.241 Sum_probs=204.9
Q ss_pred eEEEEEe----CCeEEEEeCCCc--eE-EEEeeccCceeEEEEEcc-CCCEEEEEcCC-------CCEEEEECCCC----
Q 038802 65 HLFAATH----SASLTLFSSQTL--EK-HSAISSFKDVVTCSSFRP-DGSLLAASDLS-------GLIQVFDVKSR---- 125 (532)
Q Consensus 65 ~l~~~~~----d~~v~i~~~~~~--~~-~~~~~~~~~~v~~~~~~~-~~~~l~~g~~d-------g~i~iwd~~~~---- 125 (532)
.+++|+. |+.|.+.+++.. .. ...+..|.+.|..++-+| +.+.|+++..+ ..+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 3455553 577877766543 22 234556778999999999 55677776442 24789988532
Q ss_pred -----ceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-EEec-----cCCCCceEEEEEeC-CCCC
Q 038802 126 -----TPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDL-----FGHKDYVRCGDCSP-VNGD 192 (532)
Q Consensus 126 -----~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~i~~~~-~~~~ 192 (532)
+++..+. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+ .++....++-+|+| .+++
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 2334444 4567899999999 887787765 88999999987765 3222 23566788999999 4666
Q ss_pred EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC-EEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEE
Q 038802 193 MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG-LIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSV 270 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 270 (532)
.+++. .|+++..||+|+.+....+...|+..|..+.|+|+.+ +|++|+ ||.|++||.+....++.++.+|...|+++
T Consensus 186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 66665 5799999999998777777778999999999999876 667777 79999999999889999999999999999
Q ss_pred EEeccCCCCCccccccEEEEEecCCeEEEEECCCc-----------------------------eEEEeee-cCCCeeEE
Q 038802 271 CVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM-----------------------------KVTHSMR-FPAPLMSV 320 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~-~~~~v~~~ 320 (532)
.|.|.. ..++++||.|..|.+|...+- ..+.++. |...|+++
T Consensus 265 Rfn~~h--------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 265 RFNPEH--------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred EecCcc--------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 999986 789999999999999965331 1122333 77899999
Q ss_pred EEecCCC-EEEEEecCCcEEEEeecC
Q 038802 321 AFSPDCM-TRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 321 ~~s~~~~-~l~~g~~dg~i~iw~~~~ 345 (532)
+||.-.. .+++-+.||++.|=++..
T Consensus 337 aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeccCCCeeEEEeccCceEEeecCCh
Confidence 9987554 567789999999877654
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=7.3e-21 Score=186.79 Aligned_cols=265 Identities=20% Similarity=0.228 Sum_probs=200.7
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCCCce--EEE----ecCCCCCEEEEEeec
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKSRTP--LRR----LKSHTRPVRFVKYPF 145 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~--~~~----~~~h~~~i~~~~~~~ 145 (532)
+.+.+|++.........-.....|+|++|+| +..+++.|..+|.|.+||+..+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4789999987633333334478999999999 677888899999999999987654 222 235899999999975
Q ss_pred CCC--cEEEEEeCCCeEEEEECCCCeEEE------ecc------CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC
Q 038802 146 LDK--LHLVSGGDDGIVKFWDVAGESVVL------DLF------GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211 (532)
Q Consensus 146 ~~~--~~l~s~s~dg~i~iwd~~~~~~~~------~~~------~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~ 211 (532)
+. .-++++|.||.|..|+++.-.... ... .....+++++|.+.+.+.|+.|+.+|.|.--+-...
T Consensus 302 -~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 -NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred -cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 43 349999999999999886432210 011 123468899999989999999999999887332221
Q ss_pred Cce-------eEEEecCCCcEEEEEEecCCC-EEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccc
Q 038802 212 NSK-------SVMEVNHGKPIEDVMFLPSGG-LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEA 283 (532)
Q Consensus 212 ~~~-------~~~~~~~~~~v~~i~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 283 (532)
... ......|.++|.++.++|-+. ++.+++|.+++||.......++..+..+...+++++|||..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr------- 453 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR------- 453 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-------
Confidence 111 222346889999999999665 55556699999999874447888888888889999999986
Q ss_pred cccEEEEEecCCeEEEEECCC--ceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 284 MQYRILSVALDGYMKVFDYGK--MKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
...++++..||.+.+||+.. ..++.+.+ .....+.+.|++.|+.|++|...|.+++|++...
T Consensus 454 -pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 454 -PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred -ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 67899999999999999865 33444443 3345667788888999999999999999999754
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=156.01 Aligned_cols=270 Identities=15% Similarity=0.222 Sum_probs=195.0
Q ss_pred cCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC----------ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 52 SSINSIVFSPTTSHLFAATHSASLTLFSSQT----------LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
..|.+-+++|.++++++|..+|.|.++.+.+ ...+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3566778999999999999999999998743 23344558899999999998 44777777 69999998
Q ss_pred CCCCce------EEE--ecCCC-----CCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 122 VKSRTP------LRR--LKSHT-----RPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 122 ~~~~~~------~~~--~~~h~-----~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
...... +.. ...|. ..|+++...| ..+-++.++.|+.++-||+++|+..+.+++|++.|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 643211 111 11122 4688998998 555666667899999999999999999999999999998754
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCceeEEEec---------CCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEE
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN---------HGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~ 259 (532)
....+++|+.||++++||.++.+....+... -+..|-+++ -+..++++|++..+.+|.++.. .+...
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss-e~t~v 242 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS-ESTCV 242 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC-CceEE
Confidence 5667899999999999999998777666431 122344444 4567999999999999999976 44444
Q ss_pred ccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCC-CEEEEEecCCc
Q 038802 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDC-MTRVIGTSNGT 337 (532)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~g~~dg~ 337 (532)
+. -...+..+.|.. +.+++++..+.|.-|.+.. .+..... .....++..|+... +++-.++....
T Consensus 243 fp-ipa~v~~v~F~~-----------d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~ 309 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVD-----------DCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNK 309 (325)
T ss_pred Ee-cccceeEeeeec-----------ceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEeccccee
Confidence 42 345667777764 4788888888899888653 3333333 22345555554332 45555666667
Q ss_pred EEEEe
Q 038802 338 IFAGR 342 (532)
Q Consensus 338 i~iw~ 342 (532)
+.|+.
T Consensus 310 ~~i~~ 314 (325)
T KOG0649|consen 310 LHILK 314 (325)
T ss_pred eeeee
Confidence 77654
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=4.6e-19 Score=177.31 Aligned_cols=290 Identities=27% Similarity=0.475 Sum_probs=232.5
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce-EEEEeeccCc-eeEEEEE-ccCCC-EEEEEcC-CCCEEEE
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE-KHSAISSFKD-VVTCSSF-RPDGS-LLAASDL-SGLIQVF 120 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~g~~-dg~i~iw 120 (532)
...+|...+.++.|.+.+..++.++.|+.+.+|+..... ....+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998876 6666666443 7777777 78887 5555444 9999999
Q ss_pred ECCC-CceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCC-EEEEE
Q 038802 121 DVKS-RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGD-MFVTG 197 (532)
Q Consensus 121 d~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~ 197 (532)
+... ......+..|...|.+++|+| ++..+++++. |+.+++|++..+..+..+.+|...|.+++|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9988 788888999999999999999 7778888885 99999999999888888999999999999998 776 55666
Q ss_pred eCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccC
Q 038802 198 SYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
+.|+.|++||...+.........|.... ...|+|++.++++++ ++.+++|++............|...+.++.|.|+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 295 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD- 295 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC-
Confidence 9999999998885444332233555554 338999998888777 8999999998764434444678899999999996
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEeee---cCCCeeEEEEecCCCEEEEE-ecCCcEEEEeecCcc
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR---FPAPLMSVAFSPDCMTRVIG-TSNGTIFAGRRKKKE 347 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~ 347 (532)
+..+++++.|+.+.+||..+........ +...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 296 --------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 296 --------GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred --------CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 4567778889999999998877665554 55568999994333566655 688999999998876
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=168.57 Aligned_cols=295 Identities=12% Similarity=0.129 Sum_probs=224.6
Q ss_pred cccCCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC------ceEEEEee-ccCceeEEEEEccCCCEEEEEc
Q 038802 40 SSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT------LEKHSAIS-SFKDVVTCSSFRPDGSLLAASD 112 (532)
Q Consensus 40 ~~~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~ 112 (532)
+.|..+.+.+|.+.|+++.|+.++++|++|+.|-.+++|+++. .+++.... .|...|.|++|...+..+++|.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 4555677899999999999999999999999999999999753 34444443 3558999999999999999999
Q ss_pred CCCCEEEEECCCCceEEEecC--CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-EE--EeccCCCCceEEEEEe
Q 038802 113 LSGLIQVFDVKSRTPLRRLKS--HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-VV--LDLFGHKDYVRCGDCS 187 (532)
Q Consensus 113 ~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~--~~~~~~~~~v~~i~~~ 187 (532)
.+|+|...|+++.+.+..+.. ..+.|..+..+| ..+.+++.+.++.|.+||.+... .. ...........++.|+
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 999999999999888777652 335899999999 68889999999999999998654 11 1122344567788999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcccCCceeEEE---ecC---CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 188 PVNGDMFVTGSYDHTVKLWDVRVENSKSVME---VNH---GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 188 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
|..+.++++.+..+-+-+||.+......... .+. ...-.++.|+|+|+.+.+-- ...-.+||+.+...++..+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 9888999999999999999998743322111 011 12235688999999888877 5567788987754445444
Q ss_pred cCC------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC----------ce-------------EEEee
Q 038802 261 ESH------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK----------MK-------------VTHSM 311 (532)
Q Consensus 261 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~-------------~~~~~ 311 (532)
... ...+.+++|..+ .-+++|+.+-.|++|.+.. |. ....+
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 311 235677888765 4599999999999998743 11 11222
Q ss_pred e-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 312 R-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 312 ~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
+ |..-++.+.|+|...+|++.+....+++|.-..
T Consensus 354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ecccccccceeecCCcceEeccchhhheecccccc
Confidence 2 667788999999999999999999999997543
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=194.10 Aligned_cols=282 Identities=18% Similarity=0.270 Sum_probs=229.5
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
..+.||.++|+|+.|...|.++++|+.|..++||..++..+.....+|.+.|+.++.+.++.++++++.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-----cCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-----FGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 125 ~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
+.++..+.+|++.|++++|+| ..+.+.||++++||.+- ...... ....+.+.++.+.. ++.-++||+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSR 336 (1113)
T ss_pred CchHHHHhccccceeeeccCc-----cccCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccc-cccccccccC
Confidence 999999999999999999999 34888999999999871 111111 11234566666766 7888999999
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecC-CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCC
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
|+.-..|.+...... ...+.-+.++.+ ..+.+++- +-.+++|++.++ ...+.+.+|...+..+.++|-+
T Consensus 337 d~ea~n~e~~~l~~~-------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn- 407 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWR-------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFN- 407 (1113)
T ss_pred CcccccchhhHhhhh-------ccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCC-
Confidence 999988876542111 111111111111 13445554 678999999887 8888899999999999999986
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.....+++.||...|||+-.+..++.+. ..+.+....||+||..++....-|.++|....-.+..
T Consensus 408 -------~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 408 -------PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred -------cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 6678899999999999999988877665 4567788899999999999999999999887665544
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-20 Score=177.30 Aligned_cols=247 Identities=20% Similarity=0.227 Sum_probs=197.8
Q ss_pred EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 85 KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
+-..+.+|++.|.|+...|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|....-++.++.+..+.+.+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 344578999999999999999999999999999999999999999987 5668999999994444444444444444444
Q ss_pred CCCC-------------------------------------eEEEeccCCCCceEEEEEeCCCCCEEEEEeCC---CeEE
Q 038802 165 VAGE-------------------------------------SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD---HTVK 204 (532)
Q Consensus 165 ~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d---g~i~ 204 (532)
..-| .-++....|...|+.+.|+. .|++|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence 2111 01223345888999999998 99999987664 4688
Q ss_pred EEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcccc
Q 038802 205 LWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAM 284 (532)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (532)
|+++.......-+. ...+.|.++.|+|...+++.++...|+|||+... ..+..+......|..++++|.
T Consensus 550 iHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq-elvKkL~tg~kwiS~msihp~--------- 618 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ-ELVKKLLTGSKWISSMSIHPN--------- 618 (733)
T ss_pred EEecccccccCchh-hcCCceeEEEecCCCceEEEEeccceEEEehhHH-HHHHHHhcCCeeeeeeeecCC---------
Confidence 99987654443333 4567899999999999999999999999999875 777777778889999999998
Q ss_pred ccEEEEEecCCeEEEEECCC-ceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 285 QYRILSVALDGYMKVFDYGK-MKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
+.-|+.|+.|+.+..||+.- .++.+++. |...+++++|++.-.++++|+.||.+.|+.-.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 56799999999999999975 35556666 77899999999999999999999999998643
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=171.17 Aligned_cols=278 Identities=16% Similarity=0.169 Sum_probs=209.5
Q ss_pred CCCcccCccCCCCCCCCCCCCCCCCCCcccccccCC-----CccCccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCC
Q 038802 9 QPTTVSKNFPVKPKLKPKPRNLSQTPESKYWSSFKP-----HQIPGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQT 82 (532)
Q Consensus 9 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~ 82 (532)
.+-++.+++|..|- .-....++..+++..-.. +.+.-...+|.+.+|.|+|. .+++++....++.||+.+
T Consensus 214 ~~I~sv~FHp~~pl----llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHPTAPL----LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCce----EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 34444455554443 222345666666653211 22233456999999999999 888888889999999988
Q ss_pred ceEEE--EeeccC-ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCe
Q 038802 83 LEKHS--AISSFK-DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGI 159 (532)
Q Consensus 83 ~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~ 159 (532)
.+..+ .+.++. ..+.....+|++++|+..+..|.|.+....+++.+..++ -.+.|..++|+. ++..|++++.+|.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGE 367 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCce
Confidence 66543 233333 467778899999999999999999999999999998887 578899999997 8899999999999
Q ss_pred EEEEECCCCeEEEeccCCC-CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC----CceeEEE-ecCCCcEEEEEEecC
Q 038802 160 VKFWDVAGESVVLDLFGHK-DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE----NSKSVME-VNHGKPIEDVMFLPS 233 (532)
Q Consensus 160 i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~~~~~~v~~i~~~~~ 233 (532)
|.+||++...+++.+.... -.-++++.++ ++.+||+||..|.|.|||..+. .+.++.. ..-...|+++.|+++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 9999999999988875322 2235677777 8999999999999999996542 1222222 145678999999999
Q ss_pred CCEEEEEc---CCeEEEEEccCCCeeeEEccC---CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 234 GGLIATAG---GNSVKIWDLIGGGKMVYSMES---HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 234 ~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
+++|+.++ .+.+++-.+.+. .....+.. .-+.++|++|+|. +.+++.|..+|.+.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~aFSP~---------sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCMAFSPN---------SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceEEEEecCC---------CceEEeecCCCceeeEeec
Confidence 99999988 468999888764 33333332 3356899999998 6799999999999999864
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2.9e-20 Score=159.64 Aligned_cols=250 Identities=16% Similarity=0.232 Sum_probs=190.8
Q ss_pred CCccCccccCeeEEEEcCCCCeEE-EEEeC-------CeEEEEeCCCc---------eEEEEee-ccCceeEEEEEccCC
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLF-AATHS-------ASLTLFSSQTL---------EKHSAIS-SFKDVVTCSSFRPDG 105 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~-~~~~d-------~~v~i~~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~ 105 (532)
...+..|.+.|..++-+|..+.++ ++..+ ..+.||.+... +.+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 355678899999999999776544 44332 25789987542 2233333 345689999999999
Q ss_pred CEEEEEcCCCCEEEEECCCCce-EEEec-----CCCCCEEEEEeec-CCCcEEEEEeCCCeEEEEECCCCeEEEec-cCC
Q 038802 106 SLLAASDLSGLIQVFDVKSRTP-LRRLK-----SHTRPVRFVKYPF-LDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGH 177 (532)
Q Consensus 106 ~~l~~g~~dg~i~iwd~~~~~~-~~~~~-----~h~~~i~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~ 177 (532)
..+++-. |..|.+|+++.+.. +..+. .|....++-+|+| .+++.+++ ..|+++..||+++.++...+ ..|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh
Confidence 9999877 88999999987654 33332 3556778889999 45555555 46899999999998877666 568
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecC-CCEEEEEc-CCeEEEEEccCCC-
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAG-GNSVKIWDLIGGG- 254 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~-d~~i~iwd~~~~~- 254 (532)
...|..+.|+|+...+|++|+.||.|++||.|..+.......+|...|+++.|+|. .+++++++ |..|.+|....-.
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88999999999777789999999999999999876666666689999999999994 45666666 8899998753210
Q ss_pred ---------------------------eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 255 ---------------------------KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 255 ---------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
..+.++..|...|++++|+... +-.+++-+.||.+.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad--------PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD--------PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC--------CeeEEEeccCceEEeecCC
Confidence 1344677899999999999864 6788899999999876654
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2.5e-18 Score=171.93 Aligned_cols=303 Identities=28% Similarity=0.504 Sum_probs=237.9
Q ss_pred CCCCcccccccCCC-c---cCccc-cCeeEEEE-cCCCC-eEEEEEe-CCeEEEEeCCC-ceEEEEeeccCceeEEEEEc
Q 038802 32 QTPESKYWSSFKPH-Q---IPGLV-SSINSIVF-SPTTS-HLFAATH-SASLTLFSSQT-LEKHSAISSFKDVVTCSSFR 102 (532)
Q Consensus 32 ~~~~~~~w~~~~~~-~---~~~h~-~~V~~i~~-sp~~~-~l~~~~~-d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~ 102 (532)
.+..+.+|+..... . +.++. ..+..+.+ ++++. .++..+. ++.+.+|+... ......+..|...|.+++|+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence 56777888865553 2 23323 37788887 88887 4555444 89999999998 78888899999999999999
Q ss_pred cCCCEEEEEcC-CCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCc-EEEEEeCCCeEEEEECCCCeEEE-eccCCCC
Q 038802 103 PDGSLLAASDL-SGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKL-HLVSGGDDGIVKFWDVAGESVVL-DLFGHKD 179 (532)
Q Consensus 103 ~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~ 179 (532)
|++.++++++. |+.+++|+...+..+..+.+|...|.+++|+| ++. .+++++.|+.|++||...+.... .+.+|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 99999998886 99999999998888999999999999999998 666 55666999999999998888877 6888888
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc-eeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeee
Q 038802 180 YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS-KSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMV 257 (532)
Q Consensus 180 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~ 257 (532)
.. ...|+| ++.++++++.|+.+++||++.... .... ..|...+.++.|+|++..+++++ |+.+.+||.... ...
T Consensus 244 ~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 319 (466)
T COG2319 244 SV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-KLL 319 (466)
T ss_pred ce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC-ceE
Confidence 75 448888 778889999999999999987655 2333 57789999999999888888766 778999998776 333
Q ss_pred EEc--cCCCcceEEEEEeccCCCCCccccccEEEEE-ecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEE-Ee
Q 038802 258 YSM--ESHNKTVTSVCVGRVGNESGEEAMQYRILSV-ALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVI-GT 333 (532)
Q Consensus 258 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~ 333 (532)
... ..|...+..+.+ +.. +..++.+ ..|+.+.+|+...............+..+.+++ ...++. +.
T Consensus 320 ~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 389 (466)
T COG2319 320 SSLTLKGHEGPVSSLSF-SPD--------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGS 389 (466)
T ss_pred EEeeecccCCceEEEEE-CCC--------CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEec
Confidence 333 377778999998 531 2345555 688999999998877333333333488999998 544444 68
Q ss_pred cCCcEEEEeecCcccc
Q 038802 334 SNGTIFAGRRKKKENV 349 (532)
Q Consensus 334 ~dg~i~iw~~~~~~~~ 349 (532)
.++.+.+|+.......
T Consensus 390 ~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 390 TDGTVRLWDLSTGSLL 405 (466)
T ss_pred CCCceEEEecccCeee
Confidence 8999999999887654
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=7e-20 Score=163.80 Aligned_cols=226 Identities=19% Similarity=0.275 Sum_probs=178.6
Q ss_pred EeeccCceeEEEEEcc-CCCEEEEEcCCCCEEEEECCCC-------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCe
Q 038802 88 AISSFKDVVTCSSFRP-DGSLLAASDLSGLIQVFDVKSR-------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGI 159 (532)
Q Consensus 88 ~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~ 159 (532)
.+.+|+++|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|..+.|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 6678999999999999998653 4567788999999999999988899999999999
Q ss_pred EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC-CcEEEEEEecCCCEEE
Q 038802 160 VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG-KPIEDVMFLPSGGLIA 238 (532)
Q Consensus 160 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~ 238 (532)
|.+||+.+++.+.++. |.+.|.++.|+. +|.+|++++.|..|+|||.++++....-. .|. ..-..+.|-.+|.++.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceee
Confidence 9999999999988887 999999999998 99999999999999999999977666553 443 3445667778888666
Q ss_pred EEc----CCeEEEEEccCCCeee--EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceE----E
Q 038802 239 TAG----GNSVKIWDLIGGGKMV--YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV----T 308 (532)
Q Consensus 239 ~~~----d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~ 308 (532)
+|- +..+.+||..+...++ ..+. ....|.---+.++. +-..++|-.|+.|+.|.+.+-.+ +
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt--------~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDT--------SIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCC--------CEEEEEecCCcceEEEEecCCCceeEEe
Confidence 653 4689999987654443 2332 23345555566663 44556677799999999887542 3
Q ss_pred EeeecCCCeeEEEEecC
Q 038802 309 HSMRFPAPLMSVAFSPD 325 (532)
Q Consensus 309 ~~~~~~~~v~~~~~s~~ 325 (532)
.+|....+-..+.|-|.
T Consensus 304 n~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cccccCCcccccccccc
Confidence 44455567777777775
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=6.2e-20 Score=160.06 Aligned_cols=233 Identities=19% Similarity=0.274 Sum_probs=185.3
Q ss_pred ccCeeEEEEc-------CCCCeEEEEEeCCeEEEEeCCCceEEEEeec--cCc---eeEEEEEccCCCEEEEEcCCCCEE
Q 038802 51 VSSINSIVFS-------PTTSHLFAATHSASLTLFSSQTLEKHSAISS--FKD---VVTCSSFRPDGSLLAASDLSGLIQ 118 (532)
Q Consensus 51 ~~~V~~i~~s-------p~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~g~~dg~i~ 118 (532)
...|...+|- |+..++++.+.+.-|++||.-+|+...++.. |.+ ...+++|+|||.+|++|. ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3467777775 6778999999999999999999998887765 333 457899999999999987 67899
Q ss_pred EEEC-CCCceEEE--e-----cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCC
Q 038802 119 VFDV-KSRTPLRR--L-----KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN 190 (532)
Q Consensus 119 iwd~-~~~~~~~~--~-----~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 190 (532)
+||+ ..|..... . .+..+.|.|++|+|.+...++.|+...++-||.-..+.++..+.+|.+.|+.+.|.+ +
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-d 261 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-D 261 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-C
Confidence 9999 44432211 1 234788999999998888999999999999999999999999999999999999999 9
Q ss_pred CCEEEEEeC-CCeEEEEEcccCCceeEEEecCCC-cEEE--EEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCc
Q 038802 191 GDMFVTGSY-DHTVKLWDVRVENSKSVMEVNHGK-PIED--VMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNK 265 (532)
Q Consensus 191 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~--i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 265 (532)
|+.|++|+. |..|..||+|...........|.. .-.. ....|++++|++|+ ||.|++||+.+.+..+..+..|..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 999999886 678999999975433322222322 2223 34568999999997 999999999986677888888999
Q ss_pred ceEEEEEeccCCCCCccccccEEEEEecC
Q 038802 266 TVTSVCVGRVGNESGEEAMQYRILSVALD 294 (532)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~l~s~~~d 294 (532)
.++.++++|. -.++++++..
T Consensus 342 ~vNgvslnP~---------mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNPI---------MPILATSSGQ 361 (406)
T ss_pred cccceecCcc---------cceeeeccCc
Confidence 9999999997 3456666543
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.3e-21 Score=178.14 Aligned_cols=254 Identities=20% Similarity=0.276 Sum_probs=196.7
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC--------ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCE
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT--------LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLI 117 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 117 (532)
++..|.+.|++++|+|..+.+++++.||.+.+|+++. .+.+.++.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6678999999999999999999999999999999832 46788899999999999999999999999999999
Q ss_pred EEEECCCC----------ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC--CCCceEEEE
Q 038802 118 QVFDVKSR----------TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG--HKDYVRCGD 185 (532)
Q Consensus 118 ~iwd~~~~----------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~ 185 (532)
+.|++... .....+.||.+.|+.+++++ ....|++++.||+++.|+.....+ .++.. ..+.-.+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99966321 23456789999999999998 888899999999999999876665 33322 223334566
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec------CCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeE
Q 038802 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN------HGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVY 258 (532)
Q Consensus 186 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~ 258 (532)
+-.....+.++...-+.--++++.......++... ....+.-+.++|.+.+.+++. |+.|+++|..++ .++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILH 525 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccch
Confidence 55422233333333333334444433333332211 124567788899999999988 899999998887 8889
Q ss_pred EccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEee
Q 038802 259 SMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM 311 (532)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (532)
....|...++++++.|+ +.+|++++.||.+++|.+....++...
T Consensus 526 s~~a~~~svtslai~~n---------g~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPN---------GPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred heeeccceecceeecCC---------CceEEeecCCceeehhhccchheeecc
Confidence 99999999999999999 679999999999999998776665443
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.5e-19 Score=161.76 Aligned_cols=206 Identities=17% Similarity=0.313 Sum_probs=169.0
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC-------eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE-------SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
-.+.+|+++|..++|+|.+...|++||+|.+|.||++..+ +++..+.+|...|.-+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3456899999999999999999999999999999998754 356678899999999999998889999999999
Q ss_pred eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcc-eEEEEEeccCCCC
Q 038802 202 TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKT-VTSVCVGRVGNES 279 (532)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ 279 (532)
+|.+||+.++... +.+.|..-|.+++|+.+|.++++++ |..|+|||.+++ +.+..-.+|.+. -..+.|-.+
T Consensus 155 ~v~iWnv~tgeal--i~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~---- 227 (472)
T KOG0303|consen 155 TVSIWNVGTGEAL--ITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLAS---- 227 (472)
T ss_pred eEEEEeccCCcee--eecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEecc----
Confidence 9999999985544 4456999999999999999999999 999999999988 777777778763 345556555
Q ss_pred CccccccEEEEEec----CCeEEEEECCCce---EEEeeecCCCeeEEEEecCCCEEE-EEecCCcEEEEeecCcc
Q 038802 280 GEEAMQYRILSVAL----DGYMKVFDYGKMK---VTHSMRFPAPLMSVAFSPDCMTRV-IGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 280 ~~~~~~~~l~s~~~----dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~ 347 (532)
+. +++.+. +..+-+||..+.+ ....+...+.|.---|.+|...++ +|-.||.|+.|.+....
T Consensus 228 -----g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 -----GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred -----Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 34 555543 6789999977643 345555667777777889888765 56679999999998875
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.8e-19 Score=172.03 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=218.1
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC----ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT----LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
..|.-.++|.++||+++++|+|..||+|.+|.--. ....+.+.-|.+.|++++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45667799999999999999999999999996322 23455677789999999999999999999999999999999
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC-----------CCCceEEEEEeCCCCC
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG-----------HKDYVRCGDCSPVNGD 192 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~ 192 (532)
+++ .+-+..-.++|..+.++| ++.+.+....|..|.+....+.....++.+ ..+-.+.++++| ..+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~ 358 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTN 358 (792)
T ss_pred CCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCC
Confidence 987 444555788999999999 888899999999999998765544333322 234467788888 677
Q ss_pred EEEEEeCCCeEEEEEcccCCceeEEEe----------cCCCcEEEEEEecCCCEEEEEc---------CC--eEEEEEcc
Q 038802 193 MFVTGSYDHTVKLWDVRVENSKSVMEV----------NHGKPIEDVMFLPSGGLIATAG---------GN--SVKIWDLI 251 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~l~~~~---------d~--~i~iwd~~ 251 (532)
.++-.+..|.|.+||+-+......+.. .+...+++++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 788888999999999987655543322 1223577788888899999873 23 58889765
Q ss_pred CCC---eee-EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC----------ceE--EEeeecCC
Q 038802 252 GGG---KMV-YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK----------MKV--THSMRFPA 315 (532)
Q Consensus 252 ~~~---~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~--~~~~~~~~ 315 (532)
... .+. ....+|...+...++.+... ....++++.||.++||-+.. +.+ +..+ |..
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~r-------s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~ 510 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTR-------SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKT 510 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcc-------cceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccC
Confidence 432 122 22357888877777776532 34899999999999998733 222 2222 677
Q ss_pred CeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 316 PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 316 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
++++++|+.||..|+ .+.|+.|.+||..+.
T Consensus 511 ~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 511 PITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 999999999996555 566789999999985
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=3.8e-20 Score=161.73 Aligned_cols=242 Identities=18% Similarity=0.247 Sum_probs=188.9
Q ss_pred CccccCeeEEEEcCC----CCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC-CEEEEEcCCCCEEEEEC
Q 038802 48 PGLVSSINSIVFSPT----TSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG-SLLAASDLSGLIQVFDV 122 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~ 122 (532)
..|......++|+-+ .+++|+|+.-|.|+|.|+.+++....+.+|...|+.+.|.|+. +++++++.|..|++|++
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 357778888888754 4589999999999999999999999999999999999999954 78889999999999999
Q ss_pred CCCceEEEec---CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-------------------------E---
Q 038802 123 KSRTPLRRLK---SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-------------------------V--- 171 (532)
Q Consensus 123 ~~~~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------------------------~--- 171 (532)
++..++..+. +|.+.|.++.|++ ++.++++++.|.++++|++...+. .
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 9999998875 6999999999999 899999999999999999973211 0
Q ss_pred EeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcc-cCCc---------eeEE--Ee-cCCCcEEEE--EEecCCCE
Q 038802 172 LDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR-VENS---------KSVM--EV-NHGKPIEDV--MFLPSGGL 236 (532)
Q Consensus 172 ~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---------~~~~--~~-~~~~~v~~i--~~~~~~~~ 236 (532)
.+...|..+|.|+.|. ++++++-|-++.|..|..- -.+. .... .+ -....|+-+ +|.|-++.
T Consensus 245 st~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 0223477788888774 5899999999999999872 1111 0000 11 123345544 55667889
Q ss_pred EEEEc-CCeEEEEEccCCCeee-EEcc--CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 237 IATAG-GNSVKIWDLIGGGKMV-YSME--SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 237 l~~~~-d~~i~iwd~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
||.+. .|.|.+||++....+. .++. .....|...+|+.+ +..|+..+.|++|.-||.
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d---------gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD---------GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc---------CcEEEEEeCCCcEEEEEe
Confidence 99988 8999999998764321 1221 23457899999999 678999999999999985
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.6e-20 Score=175.37 Aligned_cols=251 Identities=22% Similarity=0.271 Sum_probs=189.5
Q ss_pred EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC--------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCC
Q 038802 86 HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS--------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD 157 (532)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d 157 (532)
..++..|.+.|..++|.|....|++++.||++.+|+++. -+++.+|.+|.++|.|+++.+ ++.++++|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence 346677889999999999999999999999999999932 246788999999999999998 99999999999
Q ss_pred CeEEEEECCCC----------eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCcEE
Q 038802 158 GIVKFWDVAGE----------SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIE 226 (532)
Q Consensus 158 g~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~v~ 226 (532)
|+|+.|++... .....+.||.+.|..+++++ ..+.|++++.||+++.|+...... +++... ..+.-.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999966421 23446789999999999999 788899999999999999876544 333221 222234
Q ss_pred EEEEecCCC-EEEEEc-CCeEEEEEccCCCeeeEEccC-------CCcceEEEEEeccCCCCCccccccEEEEEecCCeE
Q 038802 227 DVMFLPSGG-LIATAG-GNSVKIWDLIGGGKMVYSMES-------HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYM 297 (532)
Q Consensus 227 ~i~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 297 (532)
++.+-.... ..++.. -+.-.++++... ..+..+.. ....+..+.+.|. ..+.+++..|+.|
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~---------~~~~~~~hed~~I 513 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPT---------ADITFTAHEDRSI 513 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCC---------CCeeEecccCCce
Confidence 455543221 111111 233334443332 11222211 1234667777777 6789999999999
Q ss_pred EEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 298 KVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 298 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+++|..++++++... |...++++++.|+|-+|++|+.||.+.+|++......
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 999999999998876 8899999999999999999999999999999766543
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.5e-19 Score=178.59 Aligned_cols=283 Identities=17% Similarity=0.243 Sum_probs=209.8
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccC---ceeEEEEEcc--CCCEEEEEcCCCCEEEEECCC---
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK---DVVTCSSFRP--DGSLLAASDLSGLIQVFDVKS--- 124 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~--- 124 (532)
+-..+.|+|-.+.++++.....|+|||.+.++....+..+. ..|+.+.+-. |..++++|+.||.|+||+-..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 35667889988889998888899999999998887776543 5788888865 567899999999999997532
Q ss_pred --CceEEEecC-------CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc-CCCCceEEEEEeCCCCCEE
Q 038802 125 --RTPLRRLKS-------HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF-GHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 125 --~~~~~~~~~-------h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l 194 (532)
.+.+..+.+ ..+.-.-+.|.. ...+|+++|+-..|+|||.....++..+. +....|+++..+...++.+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 233333221 112224567877 55567777778999999999888877763 4556788887776578999
Q ss_pred EEEeCCCeEEEEEcccCCce--eEEEecCCCc--EEEEEEecCCCE-EEEEc-CCeEEEEEccCC-CeeeEEccCCC--c
Q 038802 195 VTGSYDHTVKLWDVRVENSK--SVMEVNHGKP--IEDVMFLPSGGL-IATAG-GNSVKIWDLIGG-GKMVYSMESHN--K 265 (532)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~-l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~--~ 265 (532)
++|..||.|++||.|..... ......|... |..+.+.+.|-- |++++ +|.|++||++.. .....++..|. +
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 99999999999999875442 2223356666 999999886653 77777 999999999973 22223333333 3
Q ss_pred -ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee--------cCCCeeEEEEecCCCEEEEEecCC
Q 038802 266 -TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR--------FPAPLMSVAFSPDCMTRVIGTSNG 336 (532)
Q Consensus 266 -~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~g~~dg 336 (532)
..+++..++. ...+++|+. +.|+||++.... +..++ ..+.+.|++|+|..-.+++|+.|.
T Consensus 1305 s~lTal~VH~h---------apiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1305 SALTALTVHEH---------APIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred ccceeeeeccC---------CCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 5899999988 678888887 999999976533 22222 224689999999999999999999
Q ss_pred cEEEEeecCcc
Q 038802 337 TIFAGRRKKKE 347 (532)
Q Consensus 337 ~i~iw~~~~~~ 347 (532)
.|.||...++.
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999876543
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=6.7e-20 Score=169.96 Aligned_cols=263 Identities=16% Similarity=0.271 Sum_probs=191.1
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEE-cc-------CCCEEEEEcCCCCEEEE
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSF-RP-------DGSLLAASDLSGLIQVF 120 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~g~~dg~i~iw 120 (532)
.|...|.|+.|+.+...+.+ +.|..+.+|+--+......+....+.|....+ -+ ....++.+++||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 56777889999988765554 45566666654333332222222222221111 11 23578888999999998
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
+ ..++..+.+..|.+.+.+-.|+| ++.-|+++++||.|++|. ++|-...++.....+|.|++|.|...+.+++.+
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-- 165 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-- 165 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--
Confidence 8 55777788899999999999999 999999999999999998 456555556667789999999995566666654
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (532)
+.+.+=.+......... ..|++-|.++.|++...++++|+ |-..+|||-.. ..+.+-..|..+|++++|.|+.
T Consensus 166 ~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd~--- 239 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPEK--- 239 (737)
T ss_pred CeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecccC--cccccCChhccceeeeeecccc---
Confidence 45666666543333333 48999999999999999999999 78999999643 6788888999999999999972
Q ss_pred CccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
.++.++. .++++ .-...+.|..++||+||..+++|+..|.+.+=
T Consensus 240 -------~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 -------DYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -------ceeeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 3333332 23331 11234688999999999999999999987654
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.3e-20 Score=156.11 Aligned_cols=242 Identities=17% Similarity=0.218 Sum_probs=188.1
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee-ccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS-SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
+.+|.+.|+++.|-.++. |.+|...|.|.+|++++......+. .+...|+.+..-|+ ..+.+-+.|+.+.+|++.-+
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 458999999999998875 8999999999999999988888888 56789999998887 46778888999999988642
Q ss_pred ceEE--------------Ee-------------c--------------------------CCCCCEEEEEeecCC--CcE
Q 038802 126 TPLR--------------RL-------------K--------------------------SHTRPVRFVKYPFLD--KLH 150 (532)
Q Consensus 126 ~~~~--------------~~-------------~--------------------------~h~~~i~~~~~~~~~--~~~ 150 (532)
..+. .+ . +..+.+.|..+.... .-+
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 1110 00 0 112334444432222 235
Q ss_pred EEEEeCCCeEEEEECCCCe----------EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce----eE
Q 038802 151 LVSGGDDGIVKFWDVAGES----------VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK----SV 216 (532)
Q Consensus 151 l~s~s~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~ 216 (532)
++.|.++|.|.+||+.++. .......|..+|.++.+.+ .-+.=++|+.+..+..|++...... ..
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccce
Confidence 6778899999999999873 3334456999999999987 5555567777888999988653221 12
Q ss_pred EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC
Q 038802 217 MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG 295 (532)
Q Consensus 217 ~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg 295 (532)
.. -....|..+.+-||++++|+++ |+.|+||+.++. .++..+.-|...|++++|+|+ ...+++++.|+
T Consensus 247 ~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd---------~~lmAaaskD~ 315 (323)
T KOG0322|consen 247 IT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPD---------CELMAAASKDA 315 (323)
T ss_pred EE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCC---------CchhhhccCCc
Confidence 22 2345688899999999999999 999999999998 889999999999999999999 67899999999
Q ss_pred eEEEEEC
Q 038802 296 YMKVFDY 302 (532)
Q Consensus 296 ~i~iwd~ 302 (532)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=9.2e-19 Score=165.51 Aligned_cols=157 Identities=15% Similarity=0.262 Sum_probs=122.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce------eEEEecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEcc
Q 038802 180 YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK------SVMEVNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 180 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~ 251 (532)
.|+.+.|.|.+...|+.++.||.|++|.+..+... ......|...|+++.|+| -...|++++ |-+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 45778888888889999999999999998754321 222337899999999999 445777777 9999999999
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceE-EEeeec--CCCeeEEEEecCCCE
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV-THSMRF--PAPLMSVAFSPDCMT 328 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~--~~~v~~~~~s~~~~~ 328 (532)
+. +....+.+|.+.|.+++|||+ +.++++.+.||+|++|+.++++. +..-+. ...--.+.|.-||++
T Consensus 709 ~~-~~~~~l~gHtdqIf~~AWSpd---------Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 709 NA-KLYSRLVGHTDQIFGIAWSPD---------GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred hh-hhhheeccCcCceeEEEECCC---------CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 88 778889999999999999999 68999999999999999887653 222211 122245678889999
Q ss_pred EEEEecCC----cEEEEeecCc
Q 038802 329 RVIGTSNG----TIFAGRRKKK 346 (532)
Q Consensus 329 l~~g~~dg----~i~iw~~~~~ 346 (532)
+++.+.|. .|.+|+-.+-
T Consensus 779 viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 779 VIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEEecccccchhhhhhhhhhhc
Confidence 88877654 4777776654
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=5.7e-19 Score=158.74 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=199.1
Q ss_pred CCCCCCCCCcccccccCC------------CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCC--------C----
Q 038802 27 PRNLSQTPESKYWSSFKP------------HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQ--------T---- 82 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~------------~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~--------~---- 82 (532)
..+.-.+..+++|..... ..+.+|..+|+++.|+|+|..||+|+.+|.|.+|-.. +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 344557788899986443 2357899999999999999999999999999999754 2
Q ss_pred ----ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCC
Q 038802 83 ----LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG 158 (532)
Q Consensus 83 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg 158 (532)
......+.+|.+.|+.++|+|++.++++|+.|..+++||+..|.....+..|..-+..++|.| -++++++-+.|.
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr 187 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDR 187 (434)
T ss_pred CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCc
Confidence 234556778999999999999999999999999999999999999999999999999999999 888999999988
Q ss_pred eEEEEECCCCeEEEecc-------------------CCC----CceEEEEEeCCCCCEEEEEeC----CC-----eEEEE
Q 038802 159 IVKFWDVAGESVVLDLF-------------------GHK----DYVRCGDCSPVNGDMFVTGSY----DH-----TVKLW 206 (532)
Q Consensus 159 ~i~iwd~~~~~~~~~~~-------------------~~~----~~v~~i~~~~~~~~~l~s~s~----dg-----~i~iw 206 (532)
..+.+++...+.+.... -|. .....++|+| +|.++++.+. ++ +.++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEee
Confidence 77777665433222110 011 1234577888 8888887542 22 23444
Q ss_pred EcccCCceeEEEecCCCcEEEEEEec------------------CCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceE
Q 038802 207 DVRVENSKSVMEVNHGKPIEDVMFLP------------------SGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVT 268 (532)
Q Consensus 207 d~~~~~~~~~~~~~~~~~v~~i~~~~------------------~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 268 (532)
+-...+...........++..+.|+| -+-.++.++.+.|.+||..+.......-.-|-..++
T Consensus 267 srk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iT 346 (434)
T KOG1009|consen 267 SRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAIT 346 (434)
T ss_pred ccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeec
Confidence 43322222222222334444444444 234567777899999998876333333445899999
Q ss_pred EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE
Q 038802 269 SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT 308 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (532)
.++|+++ +..++..|.||...+.-++..++-
T Consensus 347 Diaws~d---------g~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 347 DIAWSDD---------GSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceeecCC---------CcEEEEeccCCceEEEEEcchhcc
Confidence 9999999 678999999999888877776654
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=3.6e-19 Score=151.07 Aligned_cols=247 Identities=16% Similarity=0.258 Sum_probs=186.5
Q ss_pred EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEE
Q 038802 85 KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iw 163 (532)
+...+.+|.+.|+++.|..+++ |.+|...|.|.+|++.+......+. .|...|+.+.--| + ..+.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 4456678999999999987765 9999999999999999998888888 5778899888877 4 568999999999999
Q ss_pred ECCCCeEEE--------------ec---------------------------------------cCCCCceEEEEEeCCC
Q 038802 164 DVAGESVVL--------------DL---------------------------------------FGHKDYVRCGDCSPVN 190 (532)
Q Consensus 164 d~~~~~~~~--------------~~---------------------------------------~~~~~~v~~i~~~~~~ 190 (532)
++..+..+. .+ .+..+.+.|..+...+
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 986422110 00 0112334444432222
Q ss_pred C--CEEEEEeCCCeEEEEEcccCCceeEE---------EecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC-e--
Q 038802 191 G--DMFVTGSYDHTVKLWDVRVENSKSVM---------EVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG-K-- 255 (532)
Q Consensus 191 ~--~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~-~-- 255 (532)
+ -++++|..+|.+.+||+.++.....+ ...|..+|.++.+.+.-..=++++ +..+..|++.... .
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 2 25677888999999999886322211 225889999999987554445555 6788889886431 1
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEec
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~ 334 (532)
.-....-....|..+.+-|| ++.++++|.|+.|+||+.++..++..++ |.+.|++++|+|+...+|+++.
T Consensus 243 ~~~e~~lknpGv~gvrIRpD---------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPD---------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEecCCCccceEEccC---------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 11222223446788889898 7899999999999999999999999998 8899999999999999999999
Q ss_pred CCcEEEEee
Q 038802 335 NGTIFAGRR 343 (532)
Q Consensus 335 dg~i~iw~~ 343 (532)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 186
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.2e-17 Score=155.99 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=155.1
Q ss_pred cCCCCeEEEEEeCCeEEEEeCCCceEEEEeecc---CceeEEEEEc--------------------cCCCEEEEEcCCCC
Q 038802 60 SPTTSHLFAATHSASLTLFSSQTLEKHSAISSF---KDVVTCSSFR--------------------PDGSLLAASDLSGL 116 (532)
Q Consensus 60 sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~g~~dg~ 116 (532)
.|...++|..+.||.+++||...++....+... .+..++..|. .|...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999988877766432 3444555552 13447888999999
Q ss_pred EEEEECCCCceEEEec--CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEE
Q 038802 117 IQVFDVKSRTPLRRLK--SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 117 i~iwd~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 194 (532)
|.+|++..++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+......++...+....+.+++++| ++..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEE
Confidence 9999999998887775 6999999999987 788899999999999999999999999999999999999999 89999
Q ss_pred EEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecC-----CCEEEEEc--CCeEEEEEccC
Q 038802 195 VTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-----GGLIATAG--GNSVKIWDLIG 252 (532)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~--d~~i~iwd~~~ 252 (532)
++++ +.|++||+++.+....+. +|.++|.++.|--+ |.++.++. +..+.+|-...
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9987 689999999866555555 99999999999876 67777766 45677787654
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2e-17 Score=147.26 Aligned_cols=236 Identities=14% Similarity=0.200 Sum_probs=184.4
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCC--eEEEEECCCCeE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG--IVKFWDVAGESV 170 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~ 170 (532)
...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+ ..+++..+.+. .+++++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 34567778999999999999998 6788876544322222233345555564 45666655544 499999988887
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe--cCCCcEEEEEEecCCCEEEEEc---CCeE
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAG---GNSV 245 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~---d~~i 245 (532)
+..+. ....|.++.++. +.|+++-.+ .|+|||+++.+....+.. .+...+.++.+++.+.+++--+ .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 77665 456788888864 556665554 499999999776666544 3566677777777777888765 4899
Q ss_pred EEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe-EEEEECCCceEEEeee---cCCCeeEEE
Q 038802 246 KIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY-MKVFDYGKMKVTHSMR---FPAPLMSVA 321 (532)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~ 321 (532)
.+||+.+- +++..+..|.+++-+++|+++ |.+|+|+|..|+ |||+.+.+++.+..|+ ....|.+++
T Consensus 156 ~l~d~~nl-~~v~~I~aH~~~lAalafs~~---------G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 156 VLFDTINL-QPVNTINAHKGPLAALAFSPD---------GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred EEEEcccc-eeeeEEEecCCceeEEEECCC---------CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 99999887 889999999999999999999 689999999997 7999999999999987 346789999
Q ss_pred EecCCCEEEEEecCCcEEEEeecCcc
Q 038802 322 FSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 322 ~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
|+||+++|++.++.++|++|++....
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999998875
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=9.1e-19 Score=166.46 Aligned_cols=239 Identities=19% Similarity=0.284 Sum_probs=189.8
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL 174 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 174 (532)
.|..++|.|||..|+.+. +..+.+||...|..+.++++|.+.|.|++|+. ++..+++|+.|..|.+|+..-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccccee-e-
Confidence 789999999999888776 55799999999999999999999999999998 9999999999999999986533222 2
Q ss_pred cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC
Q 038802 175 FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
..|.+.|.|+.|+| -...+++++-. ..-+|.... ..+........+.+++|..||++++.|- +|+|.+-+-...
T Consensus 90 YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~q---K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQ---KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eccCCeeeEeecCc-hHHHhhhcchh-hccccChhh---hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 35999999999999 77888888764 477887654 2222334466789999999999999998 999999874432
Q ss_pred Ce-eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEE
Q 038802 254 GK-MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIG 332 (532)
Q Consensus 254 ~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 332 (532)
.+ .+....+...+|++++|+|.... .....++......++.++.+.....-..-...-...|+++.++|.++..|
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~----G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGE----GRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCC----CccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEc
Confidence 22 23333457789999999998532 22467888889999999987654433333344567899999999999999
Q ss_pred ecCCcEEEEeecCc
Q 038802 333 TSNGTIFAGRRKKK 346 (532)
Q Consensus 333 ~~dg~i~iw~~~~~ 346 (532)
+.|+.+.+|..+.-
T Consensus 241 Gsdk~L~~fTR~Gv 254 (1081)
T KOG1538|consen 241 GSDKQLSLFTRDGV 254 (1081)
T ss_pred cCCCceEEEeecCe
Confidence 99999999987654
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=7.5e-17 Score=155.25 Aligned_cols=265 Identities=9% Similarity=0.089 Sum_probs=178.5
Q ss_pred EEEeCCeEEEEeCCC-ce--EEEEeeccCceeEEEEEccCCCEEEEEc-CCCCEEEEECCC-Cce--EEEecCCCCCEEE
Q 038802 68 AATHSASLTLFSSQT-LE--KHSAISSFKDVVTCSSFRPDGSLLAASD-LSGLIQVFDVKS-RTP--LRRLKSHTRPVRF 140 (532)
Q Consensus 68 ~~~~d~~v~i~~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~ 140 (532)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +.. ..... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 335689999999964 33 444443 345677899999999987764 578899999963 332 22222 3345678
Q ss_pred EEeecCCCcEEEEEe-CCCeEEEEECCCC----eEEEeccCCCCceEEEEEeCCCCCEEE-EEeCCCeEEEEEcccCCce
Q 038802 141 VKYPFLDKLHLVSGG-DDGIVKFWDVAGE----SVVLDLFGHKDYVRCGDCSPVNGDMFV-TGSYDHTVKLWDVRVENSK 214 (532)
Q Consensus 141 ~~~~~~~~~~l~s~s-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~ 214 (532)
++|+| +++.+++++ .++.|.+|++++. +.+..+. +.....+++++| ++++++ +...++.|.+||+.+....
T Consensus 85 i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 85 ISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 99999 787777766 4889999999642 2233332 223456788999 777775 4555699999999763221
Q ss_pred -----eEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCC-C--eeeEEccCC------CcceEEEEEeccCCC
Q 038802 215 -----SVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGG-G--KMVYSMESH------NKTVTSVCVGRVGNE 278 (532)
Q Consensus 215 -----~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~-~--~~~~~~~~~------~~~i~~~~~~~~~~~ 278 (532)
.............+.|+|+|++++++. ++.|.+||+... + ..+..+..+ ......+.++|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd--- 238 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD--- 238 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC---
Confidence 111223345567899999999987776 689999999732 1 223333221 122346888998
Q ss_pred CCccccccEEEEEe-cCCeEEEEECCCc----eEEEeeecCCCeeEEEEecCCCEEEEEec-CCcEEEEeecCc
Q 038802 279 SGEEAMQYRILSVA-LDGYMKVFDYGKM----KVTHSMRFPAPLMSVAFSPDCMTRVIGTS-NGTIFAGRRKKK 346 (532)
Q Consensus 279 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~ 346 (532)
+++++++. .++.|.+|++... +.+...........+.++|||++|+++.. ++.|.+|+++..
T Consensus 239 ------g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 239 ------GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred ------CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 56677664 4789999998542 23333333345678999999999998775 889999998643
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1.7e-18 Score=148.95 Aligned_cols=236 Identities=18% Similarity=0.224 Sum_probs=178.2
Q ss_pred CccccCeeEEEEcCCCC----eEEEEEeCCeEEEEeCCC--ceEE--EEe-----eccCceeEEEEEcc-CCCEEEEEcC
Q 038802 48 PGLVSSINSIVFSPTTS----HLFAATHSASLTLFSSQT--LEKH--SAI-----SSFKDVVTCSSFRP-DGSLLAASDL 113 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~----~l~~~~~d~~v~i~~~~~--~~~~--~~~-----~~~~~~v~~~~~~~-~~~~l~~g~~ 113 (532)
..|.-+++.+.|.|+.. .+++ +.+..+++|.+.. .+.. ..+ ..+..++++..|+. |.++|.+++-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA-TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh-cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 46888999999999863 2333 3346799998763 2111 111 23557999999987 7889999999
Q ss_pred CCCEEEEECCCCc---eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc---CCCCceEEEEEe
Q 038802 114 SGLIQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF---GHKDYVRCGDCS 187 (532)
Q Consensus 114 dg~i~iwd~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~ 187 (532)
|-+..|||++++. ....+-.|...|..++|.....+.++++|.||.|++||++..+....+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 3556778999999999997667899999999999999998765433332 224577789999
Q ss_pred CCCCCEEEEEeCCC-eEEEEEcccCCceeEEEecCCCcEEEEEEecC-CCEEEEEc-CCeEEEEEccCCCe-----eeEE
Q 038802 188 PVNGDMFVTGSYDH-TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAG-GNSVKIWDLIGGGK-----MVYS 259 (532)
Q Consensus 188 ~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~-d~~i~iwd~~~~~~-----~~~~ 259 (532)
+.+.+++|+-..|. .|.+.|+|..........+|.+.|+.++|.|. ...+++++ |..+.+||+..... ++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 98889998876654 69999999876555555689999999999994 56888888 67999999975432 2222
Q ss_pred ccCCCcceEEEEEeccCCCCCccccccEEEEEec
Q 038802 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293 (532)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~ 293 (532)
.. -.+.|+.+.|++.. +..++.+..
T Consensus 332 y~-a~~EVNqi~Ws~~~--------~Dwiai~~~ 356 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQ--------PDWIAICFG 356 (364)
T ss_pred hh-ccceeeeeeecccC--------CCEEEEEec
Confidence 22 46789999999774 556666553
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-17 Score=168.64 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=207.4
Q ss_pred ccccC--CCccCccccCeeEEEEcCCC-CeEEEEEeCCeEEEEeCCCc-------eEEEEeeccCceeEEEEEccCCCEE
Q 038802 39 WSSFK--PHQIPGLVSSINSIVFSPTT-SHLFAATHSASLTLFSSQTL-------EKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 39 w~~~~--~~~~~~h~~~V~~i~~sp~~-~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
|+.-. ...+..|...|..++.++.. +++++|+.||+|++||.... +...++......+.++.+.+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 76432 24568899999999988766 89999999999999997542 2333444456789999999999999
Q ss_pred EEEcCCCCEEEEECCCC-------ceEEEecCC--CCCEEEEEeecCCCc-EEEEEeCCCeEEEEECCCCeEEEecc--C
Q 038802 109 AASDLSGLIQVFDVKSR-------TPLRRLKSH--TRPVRFVKYPFLDKL-HLVSGGDDGIVKFWDVAGESVVLDLF--G 176 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~-------~~~~~~~~h--~~~i~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~--~ 176 (532)
|+|+.||.|.+.+++.. .+.+....+ ...|..-+|...... .++.+..-+.|..||++......+++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998752 112222222 223344445443444 78888899999999998776555443 3
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCC---CEEEEEc---CCeEEEEEc
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG---GLIATAG---GNSVKIWDL 250 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~---d~~i~iwd~ 250 (532)
..+.|++++.+| .++++++|+..|.+.+||+|-......+..++..++..+..+|-. ...++++ .+.|.+|++
T Consensus 1194 ~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 457899999999 889999999999999999998777777777888889888888732 4555544 368999999
Q ss_pred cCCCeeeEEccCCCcceEEEEE-e-------ccC---CCCCccccccEEEEEecCCeEEEEECCCceEE-----------
Q 038802 251 IGGGKMVYSMESHNKTVTSVCV-G-------RVG---NESGEEAMQYRILSVALDGYMKVFDYGKMKVT----------- 308 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~-~-------~~~---~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------- 308 (532)
.++ .+...+....+ +..+.+ . |.. ........+..+++|+.|+.|+.||....+..
T Consensus 1273 ~~g-~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1273 ETG-LRQTVLWASDG-APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred ccC-cceEEEEcCCC-CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence 877 33333322100 000000 0 000 00001112568999999999999997542111
Q ss_pred ------------------E----------------------------eeecCCCeeEEEEecC-CCEEEEEecCCcEEEE
Q 038802 309 ------------------H----------------------------SMRFPAPLMSVAFSPD-CMTRVIGTSNGTIFAG 341 (532)
Q Consensus 309 ------------------~----------------------------~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw 341 (532)
. ...|..+|+++++... ..++++++.||.|++|
T Consensus 1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 0 0014456777776644 4588999999999999
Q ss_pred e
Q 038802 342 R 342 (532)
Q Consensus 342 ~ 342 (532)
+
T Consensus 1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred C
Confidence 5
No 192
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=162.18 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=228.9
Q ss_pred ccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe-eccCceeEEEEEcc--CCCEEEEEcCCCCEEEEEC
Q 038802 46 QIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI-SSFKDVVTCSSFRP--DGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~ 122 (532)
.|.+|.+.|+.+.|+..|..+++|+.|..|.+||+..+.....+ .+|...|....|-| +...+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 46889999999999999999999999999999999988776665 57888888888988 4568999999999998776
Q ss_pred CC-Cce--EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec---cCCCC---ceEEEEEeCCCCCE
Q 038802 123 KS-RTP--LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL---FGHKD---YVRCGDCSPVNGDM 193 (532)
Q Consensus 123 ~~-~~~--~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~i~~~~~~~~~ 193 (532)
.. +.+ ...+..|.++|.-++.-|....-|.+++.|+.+.-+|++.+.+...+ ..+.. ...+++..|.+.+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 43 322 34556799999999999988889999999999999999876543332 23333 56789999988889
Q ss_pred EEEEeCCCeEEEEEcccCCce------eEEE-----ecCCCcEEEEEEecCC-CEEEEEcCCeEEEEEccCC-C------
Q 038802 194 FVTGSYDHTVKLWDVRVENSK------SVME-----VNHGKPIEDVMFLPSG-GLIATAGGNSVKIWDLIGG-G------ 254 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~------~~~~-----~~~~~~v~~i~~~~~~-~~l~~~~d~~i~iwd~~~~-~------ 254 (532)
+++|+.|-.+++||.+.-... ..+. -.....|++++|+.++ .++++-.|-.|++|.-..+ +
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 999999999999998753222 1111 1335578999999655 4666666889999953211 1
Q ss_pred ----eeeEE-ccCCCc--ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC-CCeeEEEEecCC
Q 038802 255 ----KMVYS-MESHNK--TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP-APLMSVAFSPDC 326 (532)
Q Consensus 255 ----~~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~ 326 (532)
..+.. +++|.. .|..+-|-.-. ..++++|+.-|.|.||+-.+++.+..+..+ .-|+|+.-+|--
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPr--------sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPR--------SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCc--------cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 11222 567755 56666654321 689999999999999999999998887732 478999999999
Q ss_pred CEEEEEecCCcEEEEeecCccc
Q 038802 327 MTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 327 ~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
..||+.+-|..|+||.-.+.+.
T Consensus 449 PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred chhhccCCccceeeecCCcccc
Confidence 9999999999999999866544
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.9e-17 Score=137.19 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=175.8
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCC----------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKS----------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
.|..-+|+|.+++|++|..+|.|.++.+.+ ...+...++|.++|..++|. ..+|++|++ |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 456668999999999999999999998853 23455568999999999995 456777765 9999998
Q ss_pred CCCCeE------EEe--ccCC-----CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEe
Q 038802 165 VAGESV------VLD--LFGH-----KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFL 231 (532)
Q Consensus 165 ~~~~~~------~~~--~~~~-----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 231 (532)
.+.... +.. ...| -..|+++...| ..+-+++++.|+.++.||+++++....+. +|...|.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeec
Confidence 754321 111 1112 23578899999 55555566689999999999987766665 999999999884
Q ss_pred cCCCEEEEEc-CCeEEEEEccCCCeeeEEccCC----------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEE
Q 038802 232 PSGGLIATAG-GNSVKIWDLIGGGKMVYSMESH----------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 232 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
.....+++|+ ||++++||.++. +++..+... ...|.+++.+. ..+++|+ ...+.+|
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------dWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------DWLVCGG-GPKLSLW 232 (325)
T ss_pred ccCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEeccC-----------ceEEecC-CCceeEE
Confidence 4444555666 999999999988 666665432 23456666553 4666665 5579999
Q ss_pred ECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 301 DYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 301 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.++..++...+..+.++..+.|..| .+++++....|.-|.+...-+.
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a 279 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQA 279 (325)
T ss_pred eccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeeccEEEE
Confidence 9999999999999999999999765 6777888888999998876443
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.7e-19 Score=164.60 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=218.8
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK 132 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 132 (532)
.-..+.|+.+|.+++.|+..|.|-.+|+.+++....+.. ...|.++.|-.+.+++|++- ...++|||- .|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence 456899999999999999999999999999998888765 56789999999988888876 567999994 477788887
Q ss_pred CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC
Q 038802 133 SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN 212 (532)
Q Consensus 133 ~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 212 (532)
.| ..|..+.|.| ..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+| -+..+-+|...|+|.+|...+..
T Consensus 208 ~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc
Confidence 55 4588999999 888999999999999999999999999988888999999999 77889999999999999988754
Q ss_pred ceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEE
Q 038802 213 SKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 213 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
+...+ ..|.++|.++++.++|+++++++ |..++|||++... .+.+... ..+...+++|..| ++++
T Consensus 285 PLvKi-LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls~Sqkg-----------lLA~ 350 (545)
T KOG1272|consen 285 PLVKI-LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLSLSQKG-----------LLAL 350 (545)
T ss_pred hHHHH-HhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccceeec-CCCcccccccccc-----------ceee
Confidence 44333 47999999999999999999999 9999999999874 3333333 3456678888664 6667
Q ss_pred ecCCeEEEEE-CCCce-----EEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEe
Q 038802 292 ALDGYMKVFD-YGKMK-----VTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 292 ~~dg~i~iwd-~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
+....|.||. .-.+. +.-.-...++|..+.|.|-...|-.|...|.=.+.=
T Consensus 351 ~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV 407 (545)
T KOG1272|consen 351 SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV 407 (545)
T ss_pred ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence 7777899995 22211 111112456999999999988888888777554443
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.4e-17 Score=150.89 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=161.7
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME 218 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (532)
.+++|++ ++..+++|+.||++|+|+..+...+.....|...|.+++|+| ++.+|++-+.| ..+||+.+++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6789998 889999999999999999888888888888999999999999 99999999999 89999999975554444
Q ss_pred -ecCCCcEEEEEEecCC---CEEEEEc---CCeEEEEEccCCCe----eeEEccCCCcceEEEEEeccCCCCCccccccE
Q 038802 219 -VNHGKPIEDVMFLPSG---GLIATAG---GNSVKIWDLIGGGK----MVYSMESHNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 219 -~~~~~~v~~i~~~~~~---~~l~~~~---d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
...+.....+.|+.++ .+.+.+. .+.|+.||+..... .......-...|++++.+++ +++
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d---------Gkf 295 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD---------GKF 295 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC---------CcE
Confidence 3455567788888776 3333332 46777777653322 22222233457999999999 789
Q ss_pred EEEEecCCeEEEEECCCceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
++.|+.||.|-|++..+.+.++.++ |...|+.+.|+||.+++++.+.|....+..+.-....
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~ 359 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTM 359 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccc
Confidence 9999999999999999999998887 7889999999999999999999999999988765443
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=1.7e-17 Score=163.32 Aligned_cols=260 Identities=19% Similarity=0.207 Sum_probs=190.9
Q ss_pred CcccccccCCCc---cCccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCCceE--EE----EeeccCceeEEEEEccC
Q 038802 35 ESKYWSSFKPHQ---IPGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQTLEK--HS----AISSFKDVVTCSSFRPD 104 (532)
Q Consensus 35 ~~~~w~~~~~~~---~~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~~~~--~~----~~~~~~~~v~~~~~~~~ 104 (532)
..-+|+.-.+.. ...-..+|+|+.|+|..+ +++.|+.+|.|.+||+..+.. .. ....|.++++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 567887554422 244677999999999765 666777899999999987654 22 23468899999999875
Q ss_pred CC--EEEEEcCCCCEEEEECCCCce------EEEec------CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC--
Q 038802 105 GS--LLAASDLSGLIQVFDVKSRTP------LRRLK------SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE-- 168 (532)
Q Consensus 105 ~~--~l~~g~~dg~i~iwd~~~~~~------~~~~~------~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-- 168 (532)
.. -+++++.||.|..|+++.-.. ..... .-...++++.|.+.+...++.|+++|.|..-+-...
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 44 499999999999998764321 11111 123568999999989999999999999987443222
Q ss_pred -e-----EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC-EEEEEc
Q 038802 169 -S-----VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG-LIATAG 241 (532)
Q Consensus 169 -~-----~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~ 241 (532)
. ....+..|.++|+++.++|....+|.+++ |.++++|..............+...+++++|||... .++++.
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 1 23355678999999999997777777776 899999997733333333335667799999999765 555555
Q ss_pred -CCeEEEEEccCC-CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 242 -GNSVKIWDLIGG-GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 242 -d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
+|.+.+||+... ..++.+...+....+.+.|++. +..+++|...|.+.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~---------g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN---------GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCC---------CcEEEEecCCCcEEEEEcCc
Confidence 899999999743 2455555555666778888887 67899999999999999864
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=9.9e-16 Score=136.62 Aligned_cols=276 Identities=15% Similarity=0.211 Sum_probs=197.9
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC--CCEEEEECCCCceE
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS--GLIQVFDVKSRTPL 128 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~ 128 (532)
...+..+.|+.+...|..|+.|| .++|+................|--+-|+ ..++|..+.+ ..+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34677788999998888888877 5788877655433322223345555565 4466655544 35899999988888
Q ss_pred EEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC---CCCceEEEEEeCCCCCEEEEEe--CCCeE
Q 038802 129 RRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG---HKDYVRCGDCSPVNGDMFVTGS--YDHTV 203 (532)
Q Consensus 129 ~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~s~s--~dg~i 203 (532)
..+. ...+|.++.+ +.+.|+++=.+. |+|||+++.+.++++.. +...+.++++++ .+.+++.-+ ..|.|
T Consensus 82 Ce~~-fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEe-cCCceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceE
Confidence 7776 5677999998 455677776654 99999999999998854 344455555554 455666432 35889
Q ss_pred EEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC-C-eEEEEEccCCCeeeEEccCC--CcceEEEEEeccCCCC
Q 038802 204 KLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-N-SVKIWDLIGGGKMVYSMESH--NKTVTSVCVGRVGNES 279 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d-~-~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~ 279 (532)
.+||..+-+....+. .|.+++.+++|+++|.+||++++ | .|+||++.++ +.+.++... ...|.+++|+|+
T Consensus 156 ~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~Fs~d---- 229 (391)
T KOG2110|consen 156 VLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSFSPD---- 229 (391)
T ss_pred EEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEECCC----
Confidence 999999866666666 89999999999999999999994 4 6899999888 566666432 346899999999
Q ss_pred CccccccEEEEEecCCeEEEEECCCceE-------------------------------------EEeee--cCCCeeEE
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYGKMKV-------------------------------------THSMR--FPAPLMSV 320 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------------------~~~~~--~~~~v~~~ 320 (532)
..+|.+.|..++|++|.++.... ..+.+ ..+.-..+
T Consensus 230 -----s~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~ 304 (391)
T KOG2110|consen 230 -----SQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNIC 304 (391)
T ss_pred -----CCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceE
Confidence 67899999999999998765110 00001 01111223
Q ss_pred EEe--cCCCEEEEEecCCcEEEEeecCc
Q 038802 321 AFS--PDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 321 ~~s--~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
.+. +....+.+++.||.++.|.++.+
T Consensus 305 ~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 305 SLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 344 46788999999999999999875
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2.1e-17 Score=144.42 Aligned_cols=224 Identities=17% Similarity=0.227 Sum_probs=176.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc---eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC-CC
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTL---EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK-SR 125 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~ 125 (532)
...+|+|.+|++|+..+|++.....|.||..... +...++..|...|++++|+|.++.|++|+.|..-++|... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4569999999999999999999999999987653 5678889999999999999999999999999999999983 33
Q ss_pred --ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEE----EeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 126 --TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV----LDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 126 --~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
++...+..++...+++.|+| .++.|++||....|.||-++...-- +.-..+...|++++|+| ++-++++|+.
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~ 166 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST 166 (361)
T ss_pred eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence 34445566899999999999 8999999999999999987654422 23355778899999999 9999999999
Q ss_pred CCeEEEEEccc-----CC-----------ceeEEEe-cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc
Q 038802 200 DHTVKLWDVRV-----EN-----------SKSVMEV-NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME 261 (532)
Q Consensus 200 dg~i~iwd~~~-----~~-----------~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~ 261 (532)
|+.+++|..-- .. .....+. ...+.+..+.|+|+|..|+-.+ |..+.+-|.....+.+....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 99999987421 00 0011111 4567899999999999998888 99999999766533344444
Q ss_pred CCCcceEEEEEecc
Q 038802 262 SHNKTVTSVCVGRV 275 (532)
Q Consensus 262 ~~~~~i~~~~~~~~ 275 (532)
...-+..++.|..+
T Consensus 247 ~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 247 TAQLPLLSVSWISE 260 (361)
T ss_pred hccCCceeeEeecC
Confidence 33456677776554
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.8e-18 Score=148.25 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=161.3
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCC-CCCEEEEEeCCCeEEEEEcccCCceeEEEecC--CCcE
Q 038802 149 LHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPV-NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNH--GKPI 225 (532)
Q Consensus 149 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~v 225 (532)
..++++-..|.|++||..+++.+..+.++...++.+.|... .+..+.+|+.||+|++||+|.......+.... +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56888888999999999999999999999999999999863 46789999999999999999876666655433 3477
Q ss_pred EEEEEecCCCEEEEEc-----CCeEEEEEccCCCeeeEE-ccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEE
Q 038802 226 EDVMFLPSGGLIATAG-----GNSVKIWDLIGGGKMVYS-MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKV 299 (532)
Q Consensus 226 ~~i~~~~~~~~l~~~~-----d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 299 (532)
.+++.+..+++++++. +-.+.+||++...+++.. .+.|...|++++|+|.. .++|++||.||.|.+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~--------pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD--------PNLLLSGSVDGLVNL 192 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC--------CCeEEeecccceEEe
Confidence 7888777888998886 247999999988664443 46799999999999987 789999999999999
Q ss_pred EECCC----ceEEEeeecCCCeeEEEEecCC-CEEEEEecCCcEEEEeecCcccc
Q 038802 300 FDYGK----MKVTHSMRFPAPLMSVAFSPDC-MTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 300 wd~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
||+.. -.+.+++.+...|.++.|..++ +.+.+-+..+...+|+++.+..+
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 99875 3356677788889999999876 56888899999999999987644
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=157.92 Aligned_cols=207 Identities=14% Similarity=0.230 Sum_probs=165.5
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEe
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKY 143 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 143 (532)
..++.+++||.+.|.+ ..++..+.+..|.+.+.|-.|+|||.-|++++.||.|++|.- +|-.-.++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 3688889999999998 567888899999999999999999999999999999999984 44444445556788999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCC
Q 038802 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGK 223 (532)
Q Consensus 144 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 223 (532)
.|+.++.+++.+ +.+.+=-+.....+...+.|.+-|.++.|++ ..+++++|+.|-..++||-.. ........|..
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G--~~Lf~S~~~ey 228 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG--ANLFTSAAEEY 228 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccC--cccccCChhcc
Confidence 995555555544 5666666666666677889999999999999 899999999999999999764 33344447899
Q ss_pred cEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEE
Q 038802 224 PIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKV 299 (532)
Q Consensus 224 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 299 (532)
+|++++|+|+ +.++.++-++.+ .-....+.|..++||+| +..++.|+..|.+.+
T Consensus 229 ~ITSva~npd-~~~~v~S~nt~R------------~~~p~~GSifnlsWS~D---------GTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYNTAR------------FSSPRVGSIFNLSWSAD---------GTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeccc-cceeeeeeeeee------------ecCCCccceEEEEEcCC---------CceeeccccCceEEE
Confidence 9999999999 666666644544 12234678999999999 567888888887654
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.4e-18 Score=160.22 Aligned_cols=216 Identities=17% Similarity=0.239 Sum_probs=166.5
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe-eccCceeEEEEEcc--CCCEEEEEcCCCCEEEE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI-SSFKDVVTCSSFRP--DGSLLAASDLSGLIQVF 120 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iw 120 (532)
...+.||.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4568999999999999999999999999999999999887777766 67999999999999 56789999999999999
Q ss_pred ECCC----------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-------E---EeccCCCCc
Q 038802 121 DVKS----------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-------V---LDLFGHKDY 180 (532)
Q Consensus 121 d~~~----------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~---~~~~~~~~~ 180 (532)
|+.. ......+..|...|..++-.|...+.+.++++||+|+-+|++.... . ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 2345556789999999999995568999999999999999986321 1 111122234
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC------------------ceeEEEecCC-----------CcEEEEEEe
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN------------------SKSVMEVNHG-----------KPIEDVMFL 231 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~~~~~~~~-----------~~v~~i~~~ 231 (532)
..|++++|.+..+|++|+.|-..++||.+... +...+..+|- ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 67899999889999999999999999954210 0111111121 124667899
Q ss_pred cCCCEEEEEc-CCeEEEEEccCCCeeeEE
Q 038802 232 PSGGLIATAG-GNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 232 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 259 (532)
|+|.-|+..- +..|+++|+..+..+...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 9998665554 679999999877444433
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.5e-17 Score=145.20 Aligned_cols=250 Identities=16% Similarity=0.197 Sum_probs=187.0
Q ss_pred EEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC------CceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCe
Q 038802 87 SAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS------RTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGI 159 (532)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~ 159 (532)
+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|++|.. .+..+++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 34567999999999999999999999999999999853 34454443 3568999999998 8889999999999
Q ss_pred EEEEECCCCeEEEeccC--CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce--eEEEecCCCcEEEEEEecCC-
Q 038802 160 VKFWDVAGESVVLDLFG--HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK--SVMEVNHGKPIEDVMFLPSG- 234 (532)
Q Consensus 160 i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~- 234 (532)
|...|+++.+.+..+.. ..+.|..+..+| ..+.|++.+.+|.|.+||.+..... .......+....++.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999999988876642 234899999999 6899999999999999999875422 23333566778999999955
Q ss_pred CEEEEEc-CCeEEEEEccCCCeeeEEccCC------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceE
Q 038802 235 GLIATAG-GNSVKIWDLIGGGKMVYSMESH------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307 (532)
Q Consensus 235 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (532)
.+|++++ .+.+.+||.+....++....+. ...-.++.|+|. +..+++.-....-.+||+-+.++
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~---------G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS---------GNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC---------CCeehhhhccCCCEEeeeecccc
Confidence 4666666 6789999998764444333221 112256789998 45666666555566788776443
Q ss_pred -EEeeecC-------CCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 308 -THSMRFP-------APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 308 -~~~~~~~-------~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+..+.|. ..+.+++|..|. .+++|+.+=.|++|++.....
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 3333332 246677887664 489999999999999986543
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=5.1e-19 Score=172.22 Aligned_cols=244 Identities=13% Similarity=0.214 Sum_probs=195.3
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEE
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iw 163 (532)
+.++.+.+|-+.|+|+.|...|.++++|+.|..++||..+++.++....||.+.|+.++.+. ++.+++++|.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEE
Confidence 33455678999999999999999999999999999999999999999999999999999987 88899999999999999
Q ss_pred ECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce---eEEEecCCCcEEEEEEecCCCEEEEE
Q 038802 164 DVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK---SVMEVNHGKPIEDVMFLPSGGLIATA 240 (532)
Q Consensus 164 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~ 240 (532)
.+.++.++..+.+|++.|++++|+| +.+.+.||++++||.+-.... .-.....+.-+.++.|..++.-++++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999 448889999999998821000 11122345667788888888888888
Q ss_pred c-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCee
Q 038802 241 G-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLM 318 (532)
Q Consensus 241 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 318 (532)
+ |+.-..|.+... ..+...+.-+..+.+. ..+.+++-.+-.+++|++.++...+... |...+.
T Consensus 335 s~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~--------~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y 399 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQL-------AWRSNLLIFVTRSSDL--------SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY 399 (1113)
T ss_pred cCCcccccchhhHh-------hhhccceEEEeccccc--------cccceeeeeeeEeeeeecccchhhhhhccccccee
Confidence 8 787777765321 1222222222222221 3467788888999999999999888776 778999
Q ss_pred EEEEecCCCE-EEEEecCCcEEEEeecCccc
Q 038802 319 SVAFSPDCMT-RVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 319 ~~~~s~~~~~-l~~g~~dg~i~iw~~~~~~~ 348 (532)
.+.++|-+.. ..+++.||...|||+-.+-.
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 9999996654 55889999999999987643
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.7e-16 Score=138.12 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=196.8
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee-ccCceeEEEEEccC-CCEEEEEcCCCCEEEEECCCC---
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS-SFKDVVTCSSFRPD-GSLLAASDLSGLIQVFDVKSR--- 125 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~--- 125 (532)
+..+..++|++.-..+++++.|-.|++||-.. +....++ .....|+|++|.|. ++-|++|+..| |++|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34677899999777889999999999999766 4333443 34568999999994 46777777554 999986431
Q ss_pred -c----------eEEEecCCCCCEEEEEeecCCCcEEEEEeC-CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCE
Q 038802 126 -T----------PLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDM 193 (532)
Q Consensus 126 -~----------~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 193 (532)
. .+....+| .+|+++.|++ ++..+++++. |..|.+||..++..+.-.....+.++-+.|+| ++++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDV 252 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCE
Confidence 1 12223344 6899999999 8888888875 67899999999887765544567788899999 9999
Q ss_pred EEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeee--------------EE
Q 038802 194 FVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMV--------------YS 259 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~--------------~~ 259 (532)
|++++-|+..++|+........... -..+.|...+|+|.|.+|+-+..|.-.+|.+.-.++.. ..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999999654432222222 23449999999999998887776666777664321110 00
Q ss_pred c-----cC----CCcceEEEEEeccCCCCCccccccEEEEEecC--------CeEEEEECCCceEEEee----ecCCCee
Q 038802 260 M-----ES----HNKTVTSVCVGRVGNESGEEAMQYRILSVALD--------GYMKVFDYGKMKVTHSM----RFPAPLM 318 (532)
Q Consensus 260 ~-----~~----~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~----~~~~~v~ 318 (532)
+ .. -.+.+.+++|.|. +.++++.-.. +.|.+||......+... .......
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDps---------GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~ 402 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPS---------GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPA 402 (445)
T ss_pred chhhhhhcCcccccCccceeeECCC---------CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCc
Confidence 0 11 1457789999999 5677766543 34677887664444333 1222345
Q ss_pred EEEEec---CCCEEEEEecCCcEEEEeecC
Q 038802 319 SVAFSP---DCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 319 ~~~~s~---~~~~l~~g~~dg~i~iw~~~~ 345 (532)
.++|+| +|.+|..+-+.|.+.-|.+.-
T Consensus 403 ~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 403 YISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred eEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 566765 578888888899988887753
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.5e-17 Score=151.68 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=211.7
Q ss_pred CccCccccCeeEEEEcCCCCeEE-EEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLF-AATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
.+-.+|...-+.|..+|||+|++ +|..-..|++||+.+......-......|.-.-.+.|-..++.-..|.+|-+....
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 33467888899999999999765 56678899999998765543332223455555555555555555557766554322
Q ss_pred CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 124 SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 124 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
|.... ++ -...-.+++++..+.. |+.++....|+-++++.|..+..+....+.++++..++ ...+|++|+.||.|
T Consensus 125 -G~hy~-~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 125 -GRHYR-TR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVV 199 (703)
T ss_pred -Ceeee-ee-cCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceE
Confidence 22111 11 1223356677653444 55555667799999999999988888889999999999 88899999999999
Q ss_pred EEEEcccCCceeEEEec-----CC-----CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 204 KLWDVRVENSKSVMEVN-----HG-----KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~-----~~-----~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
..||.++......+... |. ..|+++.|+.+|-.+++|. +|.+.|||++.....+..-.+..-+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 99999986555444332 22 2499999999999999998 8999999999885555444455668999999
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
.+.+. ...+++. ....++|||-.+++....+.....++.+++-|++.+++++-.++.+..|=+..
T Consensus 280 ~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 280 QDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccCC-------CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 87642 3445544 45689999999999999999888899999999999999999998877776554
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.9e-15 Score=143.71 Aligned_cols=281 Identities=18% Similarity=0.176 Sum_probs=183.8
Q ss_pred eEEEE-EeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEe
Q 038802 65 HLFAA-THSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKY 143 (532)
Q Consensus 65 ~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 143 (532)
++++. ..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence 44443 457999999999999999998766655567899999999999999999999999999999987544 4578999
Q ss_pred ecCCCcEEEEEe-CCCeEEEEECCCCeEEEeccCC-------CCceEEEEEeCCCCCEEE-EEeCCCeEEEEEcccCCce
Q 038802 144 PFLDKLHLVSGG-DDGIVKFWDVAGESVVLDLFGH-------KDYVRCGDCSPVNGDMFV-TGSYDHTVKLWDVRVENSK 214 (532)
Q Consensus 144 ~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~ 214 (532)
++ ++++++++. .++.+.++|.++.+.+..+... ...+.++..+| ....++ +--..+.|.+.|....+..
T Consensus 86 s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 86 SP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp ---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred cC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccccc
Confidence 99 888777665 6899999999999988877432 34567787788 555444 4444588888898776555
Q ss_pred eEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEEcc----CCCc-----------ceEE--------
Q 038802 215 SVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYSME----SHNK-----------TVTS-------- 269 (532)
Q Consensus 215 ~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~----~~~~-----------~i~~-------- 269 (532)
...............|+|++++++++. ++.|.++|..++ +.+..+. .|.. +++.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 555556677788999999999877764 678999998765 3332211 1111 1111
Q ss_pred ---EEEecc-------------------CCCCCccccccEEEEE----ecCCeEEEEECCCceEEEeeecC--CCeeEEE
Q 038802 270 ---VCVGRV-------------------GNESGEEAMQYRILSV----ALDGYMKVFDYGKMKVTHSMRFP--APLMSVA 321 (532)
Q Consensus 270 ---~~~~~~-------------------~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~ 321 (532)
+.-.+. +-....++++.++++. ...++|.++|..+.+.+..+... ..+..+.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 000000 0000002335677776 44589999999999988888633 3599999
Q ss_pred EecCCCEEEEEecCC--cEEEEeecCcccc
Q 038802 322 FSPDCMTRVIGTSNG--TIFAGRRKKKENV 349 (532)
Q Consensus 322 ~s~~~~~l~~g~~dg--~i~iw~~~~~~~~ 349 (532)
|++||+.+..+..++ .|.+||..+.+..
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 999999877665544 5999999988765
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1e-16 Score=160.23 Aligned_cols=261 Identities=15% Similarity=0.237 Sum_probs=191.9
Q ss_pred CCCcccccccCCCccCcc------ccCeeEEEEcC--CCCeEEEEEeCCeEEEEeCC-----CceEEEEeecc-------
Q 038802 33 TPESKYWSSFKPHQIPGL------VSSINSIVFSP--TTSHLFAATHSASLTLFSSQ-----TLEKHSAISSF------- 92 (532)
Q Consensus 33 ~~~~~~w~~~~~~~~~~h------~~~V~~i~~sp--~~~~l~~~~~d~~v~i~~~~-----~~~~~~~~~~~------- 92 (532)
...+++|+..+...+.+. ...|+.+.+-. |..++++|+.||.|+||+-. +.+.+....+-
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 446788987777766543 34688888865 34589999999999999642 22333332221
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe--
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-- 169 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-- 169 (532)
.+.-.-++|.....+|++++.-..|+|||......+..+. +....|+++.-+...++.+++|..||.|++||.+...
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 1222446787766667766668899999999877777665 3456678777665578999999999999999987543
Q ss_pred -EEEeccCCCCc--eEEEEEeCCCCC-EEEEEeCCCeEEEEEcccCCceeEEEec----CCCcEEEEEEecCCCEEEEEc
Q 038802 170 -VVLDLFGHKDY--VRCGDCSPVNGD-MFVTGSYDHTVKLWDVRVENSKSVMEVN----HGKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 170 -~~~~~~~~~~~--v~~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~ 241 (532)
.+...+.|++. |..+.+.+ .|- .+++|+.||.|++||+|........... -++..+++..++...++|+|+
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred ccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 46667888888 99999988 443 5999999999999999985333333222 144699999999999999999
Q ss_pred CCeEEEEEccCCCeeeEEcc-------CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 242 GNSVKIWDLIGGGKMVYSME-------SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 242 d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
.+.|+||++... .+..+. ...+.+.|++|+|. .-++++|+.|.+|.||.....
T Consensus 1324 ~q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~---------~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1324 AQLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPH---------RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceEEEEecChh--hhcccccCcccccCcCCCcceeeecch---------hHhhhhccCCceEEEeecCCc
Confidence 999999998643 222222 12346799999998 678999999999999987654
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=2.4e-16 Score=137.86 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=183.9
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC---ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR---TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 166 (532)
.....+|+|.+|++|+..+|++.....|.||..... +..++++.|...|++++|+| ..+.|++|+.|..-++|...
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccC
Confidence 334579999999999999999999999999998654 46788899999999999999 88899999999999999983
Q ss_pred -CC--eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce---eEEEecCCCcEEEEEEecCCCEEEEE
Q 038802 167 -GE--SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK---SVMEVNHGKPIEDVMFLPSGGLIATA 240 (532)
Q Consensus 167 -~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~ 240 (532)
.+ ++...+..++...+++.|+| +++.|++||.-..|.+|-++....= ..+...+.+.|.+++|+|++-++++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 34555667899999999999 9999999999999999988753321 22344677889999999999999999
Q ss_pred c-CCeEEEEEccCC-----------------CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 241 G-GNSVKIWDLIGG-----------------GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 241 ~-d~~i~iwd~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
+ |+..+||..--. +..+.++....+.+..+.|+|. +..|+-.+.|+.+.+-|.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s---------G~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS---------GNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC---------CCEeeEecCCCceEEeec
Confidence 9 999999874210 1223334456778999999999 678999999999999998
Q ss_pred CCce-EEEeee-cCCCeeEEEEecCCCEEEEEecC
Q 038802 303 GKMK-VTHSMR-FPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 303 ~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
.... .+.... ..-|..++.|-.+.. ++.++.|
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 7654 333333 336778888876644 3444444
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.8e-16 Score=136.96 Aligned_cols=279 Identities=13% Similarity=0.155 Sum_probs=203.3
Q ss_pred EEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEE-cCCCCEEEEECCCCceEEEecCC
Q 038802 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAAS-DLSGLIQVFDVKSRTPLRRLKSH 134 (532)
Q Consensus 56 ~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h 134 (532)
-++|||+|+++|+++.- ++.|-|..+.+.++.+.. -+.|.-+.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 47899999999998864 888999888776554433 4677888999988777655 67889999999988888889888
Q ss_pred CCCEEEEEeecCCC-cEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC-------------
Q 038802 135 TRPVRFVKYPFLDK-LHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD------------- 200 (532)
Q Consensus 135 ~~~i~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d------------- 200 (532)
..++.+++|+| ++ ..|.+..-|-.|.+|.+.+.+....-. ....+..++|+| ++++.+..+.-
T Consensus 91 ~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 99999999999 66 666677789999999999877654332 334457888998 88887765431
Q ss_pred -----------------------CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCC--
Q 038802 201 -----------------------HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGG-- 254 (532)
Q Consensus 201 -----------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~-- 254 (532)
..+.+||.-- ...+.....+-++..+.|+|.+++++.|+ |+.+++.+--+-+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchh--hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 2344554321 11222233456788999999999999999 9888775421100
Q ss_pred ----------------------e-----------------------------------eeEEc------cCCCcceEEEE
Q 038802 255 ----------------------K-----------------------------------MVYSM------ESHNKTVTSVC 271 (532)
Q Consensus 255 ----------------------~-----------------------------------~~~~~------~~~~~~i~~~~ 271 (532)
+ .+..+ ......+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0 00001 11122455677
Q ss_pred EeccCCCCCccccccEEEEEecC--CeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 272 VGRVGNESGEEAMQYRILSVALD--GYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
|++| ..++++-... +.+-+||+...++...+....+|....|+|....|+.......+++|.......+
T Consensus 326 fs~D---------s~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 326 FSCD---------STYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ecCC---------ceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 7777 5666665443 5799999999888777777889999999999999998888889999998775544
Q ss_pred c
Q 038802 350 E 350 (532)
Q Consensus 350 ~ 350 (532)
.
T Consensus 397 ~ 397 (447)
T KOG4497|consen 397 G 397 (447)
T ss_pred e
Confidence 3
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=149.87 Aligned_cols=284 Identities=15% Similarity=0.211 Sum_probs=207.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC---CEEEEEcCCCCEEEEECCCCc
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG---SLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~ 126 (532)
-...-..-.|++|+++++..+ +..|.||...++.++..+..|..+++.+.+.|.. .++++++.+|.|++||...+.
T Consensus 15 ~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred ccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 333334456999999877665 5889999999999999999999999999998854 467799999999999998887
Q ss_pred eEEEecCCCCCEEEEEe-----------------------------------------------------------ecCC
Q 038802 127 PLRRLKSHTRPVRFVKY-----------------------------------------------------------PFLD 147 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~-----------------------------------------------------------~~~~ 147 (532)
.++++..+. ++.++.+ ++ .
T Consensus 94 Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ 171 (792)
T KOG1963|consen 94 LLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-S 171 (792)
T ss_pred EEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-C
Confidence 776654221 1111111 11 1
Q ss_pred CcEEEEEeCCCeEEEEECCCCeEEEe----ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc---CCceeEEEec
Q 038802 148 KLHLVSGGDDGIVKFWDVAGESVVLD----LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV---ENSKSVMEVN 220 (532)
Q Consensus 148 ~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~ 220 (532)
+. +.....+..+.+|+...+..... -..|...++|.+++| +++++++|..||.|.+|.--. .........=
T Consensus 172 ge-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 172 GE-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred ce-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 11 12222334456666655331110 124777789999999 999999999999999996432 1122222224
Q ss_pred CCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEE
Q 038802 221 HGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKV 299 (532)
Q Consensus 221 ~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 299 (532)
|...|.+++|+++|.+|.+|+ .+.+.+|.+.+++ ..-+..-.++|..+.++|+ +.+......|..|.+
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~d---------s~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPD---------SDLYSLVLEDNQIHL 318 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCC---------CCeEEEEecCceEEE
Confidence 778999999999999999999 8999999998874 3445556789999999999 567788888999999
Q ss_pred EECCCceEEEeeecC------------CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 300 FDYGKMKVTHSMRFP------------APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 300 wd~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
....+.+...++.+. +-.+.++++|.-+.++..+..|.|.+||+-+....
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 988776655444322 23567889997778888899999999999887543
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.8e-17 Score=149.07 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=154.9
Q ss_pred EEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 97 TCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
.+++|+++|..+++|+.||+++||+..+...+.....|.+.|.++.|+| |+..|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999999999999999888888888888999999999999 99999999999 999999999976665542
Q ss_pred --CCCceEEEEEeCCCC---C--EEEEEeCCCeEEEEEcccCCc----eeEEEecCCCcEEEEEEecCCCEEEEEc-CCe
Q 038802 177 --HKDYVRCGDCSPVNG---D--MFVTGSYDHTVKLWDVRVENS----KSVMEVNHGKPIEDVMFLPSGGLIATAG-GNS 244 (532)
Q Consensus 177 --~~~~v~~i~~~~~~~---~--~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~ 244 (532)
.......+.|+. ++ . +++....-+.|+.||+..... ...........|.+++++++|++++.|+ ||.
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 233455666765 44 2 233333445677777654433 1122223456899999999999999999 999
Q ss_pred EEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 245 VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
|.|++..+.......-+.|...|+.+.|+|+ ..++++.+.|....+..+.
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd---------sr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD---------SRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCC---------cCcccccccCCceeEEEEe
Confidence 9999998875566666789999999999999 6788888888888877654
No 212
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.74 E-value=2.4e-17 Score=132.41 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=120.1
Q ss_pred chhHHHhhcccchHHHHHHhhCCCCChhHHHHHHHHH---hh------chHHHHhcCCChHhHHHHHHHHHhccCCCCch
Q 038802 400 LGEHDKLLKKFRHKEALVSVLNGKNPENVVAVMEELV---AR------KKLMKCVSNLDNEELGLLLSFMQKHSTVPRYS 470 (532)
Q Consensus 400 ~~~~~~~l~~~~~~~al~~al~~~~~~~~~~~~~~l~---~~------~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 470 (532)
.|++.+++++++|.+|+..|+++++|..++.+++++. .. ..++.+++.++.+++..||+|+++|++|+|++
T Consensus 1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~ 80 (141)
T PF08625_consen 1 EQELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS 80 (141)
T ss_pred CchHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH
Confidence 3678999999999999999999999999999999998 21 45999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 038802 471 GLLIGLMEKVLEMRAKDI-RTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPLLRI 528 (532)
Q Consensus 471 ~~~~~~~~~il~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~g~l~~~~~~ 528 (532)
.+++.++..||..|.++- .+.|.+.+.++.|..+.++|.+++.+|.+-...||.++..
T Consensus 81 ~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~syllDy~l~~ 139 (141)
T PF08625_consen 81 HVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKSYLLDYTLQQ 139 (141)
T ss_pred HHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999765 5669999999999999999999999999999999998763
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=4.2e-15 Score=143.11 Aligned_cols=275 Identities=10% Similarity=0.156 Sum_probs=174.8
Q ss_pred CCCcccccccCCC-----ccCccccCeeEEEEcCCCCeEEEEE-eCCeEEEEeCC-CceE--EEEeeccCceeEEEEEcc
Q 038802 33 TPESKYWSSFKPH-----QIPGLVSSINSIVFSPTTSHLFAAT-HSASLTLFSSQ-TLEK--HSAISSFKDVVTCSSFRP 103 (532)
Q Consensus 33 ~~~~~~w~~~~~~-----~~~~h~~~V~~i~~sp~~~~l~~~~-~d~~v~i~~~~-~~~~--~~~~~~~~~~v~~~~~~~ 103 (532)
+..+..|+.-... ....+.+....++++|++++|++++ .++.|.+|++. ++.. ..... ..+....++|+|
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 4556666652111 1122345677899999999887765 47889999986 3332 22222 234567899999
Q ss_pred CCCEEEEEcC-CCCEEEEECCC-C---ceEEEecCCCCCEEEEEeecCCCcEEE-EEeCCCeEEEEECCCCeEEE-----
Q 038802 104 DGSLLAASDL-SGLIQVFDVKS-R---TPLRRLKSHTRPVRFVKYPFLDKLHLV-SGGDDGIVKFWDVAGESVVL----- 172 (532)
Q Consensus 104 ~~~~l~~g~~-dg~i~iwd~~~-~---~~~~~~~~h~~~i~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~----- 172 (532)
+++++++++. ++.|.+|++.+ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...+.
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 9999887764 78999999964 2 2223332 334467788999 776665 55567999999997633221
Q ss_pred --eccCCCCceEEEEEeCCCCCEEEEEeC-CCeEEEEEcccC--CceeEEEec-------CCCcEEEEEEecCCCEEEEE
Q 038802 173 --DLFGHKDYVRCGDCSPVNGDMFVTGSY-DHTVKLWDVRVE--NSKSVMEVN-------HGKPIEDVMFLPSGGLIATA 240 (532)
Q Consensus 173 --~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~ 240 (532)
... .......+.|+| ++++++++.. +++|.+||+... ......... +......+.++|++++++++
T Consensus 168 ~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 168 EVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred ceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 111 123456789999 8898877766 899999999742 222222211 11123368899999998888
Q ss_pred c--CCeEEEEEccCCCe---eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECC--Cce--EEEe
Q 038802 241 G--GNSVKIWDLIGGGK---MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYG--KMK--VTHS 310 (532)
Q Consensus 241 ~--d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~~~--~~~~ 310 (532)
. ++.|.+|++...+. .+..... ......+.++|+ +.+|++++ .+++|.+|+++ ++. .+..
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d---------g~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS---------GKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC---------CCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 5 67999999865432 2222221 123457899998 45666555 48999999874 333 3334
Q ss_pred eecCCCeeEEEE
Q 038802 311 MRFPAPLMSVAF 322 (532)
Q Consensus 311 ~~~~~~v~~~~~ 322 (532)
+.......+++|
T Consensus 316 ~~~g~~P~~~~~ 327 (330)
T PRK11028 316 YAVGQGPMWVSV 327 (330)
T ss_pred cccCCCceEEEE
Confidence 433444455554
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=6e-16 Score=153.58 Aligned_cols=231 Identities=15% Similarity=0.179 Sum_probs=162.9
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCCce--EEEecCCCCCEEEEEeecCC
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSRTP--LRRLKSHTRPVRFVKYPFLD 147 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~~~~~ 147 (532)
..|.+||..... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+| +
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D 258 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D 258 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence 589999986544 55677788899999999999999987643 3699999988753 3334443 34689999 8
Q ss_pred CcEEEEEe-CCCeEEE--EECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe-CCCeEEEEEcccCCceeEEEecCCC
Q 038802 148 KLHLVSGG-DDGIVKF--WDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS-YDHTVKLWDVRVENSKSVMEVNHGK 223 (532)
Q Consensus 148 ~~~l~s~s-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~ 223 (532)
+..|+.++ .+|.+.+ ||+.++.. ..+..+...+.+..|+| ++..++.++ .+|...+|++.......... .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 87777654 6776555 56666654 44555777788999999 888766554 57888888876433322222 3332
Q ss_pred cEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 224 PIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 224 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
.+..|+|+|+.++..+...+.+||+.++. .......+ ....+.|+|+ +.+++.++.+|...+|++.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~-~~~lt~~~--~~~~~~~sPd---------G~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNVVKQDLTSGS-TEVLSSTF--LDESPSISPN---------GIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCEEEEECCCCC-eEEecCCC--CCCCceECCC---------CCEEEEEEcCCCceEEEEE
Confidence 45789999999988875556679998763 22222222 2356789999 6788888889988888753
Q ss_pred --CceEEEeee-cCCCeeEEEEecC
Q 038802 304 --KMKVTHSMR-FPAPLMSVAFSPD 325 (532)
Q Consensus 304 --~~~~~~~~~-~~~~v~~~~~s~~ 325 (532)
++.....+. +.+.+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 566677665 5677888999984
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.8e-15 Score=130.36 Aligned_cols=236 Identities=17% Similarity=0.244 Sum_probs=169.7
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCC--CEEEEEeecCCCcEEEEEeCC------CeEEEEECC
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTR--PVRFVKYPFLDKLHLVSGGDD------GIVKFWDVA 166 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~~~~~~~~l~s~s~d------g~i~iwd~~ 166 (532)
....++|+.|...+++|..+| .+||+.+--+....-+.+.+ .+..+-|- .+-+.++||.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345589999999999998776 89999875333222222222 23333342 22333344433 469999976
Q ss_pred CCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc-CCceeEEEe-cCCCcEEEEEEecCCCEEEEEc--C
Q 038802 167 GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV-ENSKSVMEV-NHGKPIEDVMFLPSGGLIATAG--G 242 (532)
Q Consensus 167 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~--d 242 (532)
..+++.++. ...+|.++.+.+ +.+++.- .+.|++|...+ .+....+.. .......+++-..+..+||.-+ -
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 677777665 677899999976 4555543 57899999873 333333332 2244444444443555666656 5
Q ss_pred CeEEEEEccCCCe-eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe-EEEEECCCceEEEeee---cCCCe
Q 038802 243 NSVKIWDLIGGGK-MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY-MKVFDYGKMKVTHSMR---FPAPL 317 (532)
Q Consensus 243 ~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~---~~~~v 317 (532)
|.|.|-|+..... ....+.+|.+.|.+++++.+ |.+++|+|..|+ |||||..+++.+..++ ....|
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~---------Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ---------GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC---------ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 8999999986533 35778899999999999988 689999999997 8999999999999987 44689
Q ss_pred eEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 318 MSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 318 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
.+++|||++.+|+++|..|+|+||.+....
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999999999999998754
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=151.81 Aligned_cols=235 Identities=16% Similarity=0.163 Sum_probs=195.5
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
.-..+.+.++.+|++|+.|+..|.+..+|..+++....+. -...|.++.|.. +..++++ .....++|||- .|..++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AV-AQK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAV-AQKKYVYVYDN-NGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHh-hhhceEEEecC-CCcEEe
Confidence 3456788999999999999999999999999998888776 456788999986 6655555 46688999994 577888
Q ss_pred eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc
Q 038802 173 DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 173 ~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
.+..|. .|..+.|.| ..-+|++++..|.++.-|+.+++....+. ...+.+..++-+|-+..+-+|. .|+|.+|...
T Consensus 205 Clk~~~-~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 205 CLKRHI-RVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred ehhhcC-chhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 887664 588899999 78889999999999999999987776665 3466788899999888888887 8999999987
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEE
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 331 (532)
.. .++..+..|.++|.++++.+. +.|++|.|.|..++|||+++...++++..+.+...+++|..| .| +
T Consensus 282 sk-ePLvKiLcH~g~V~siAv~~~---------G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lL-A 349 (545)
T KOG1272|consen 282 SK-EPLVKILCHRGPVSSIAVDRG---------GRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LL-A 349 (545)
T ss_pred Cc-chHHHHHhcCCCcceEEECCC---------CcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ce-e
Confidence 76 777788899999999999999 789999999999999999998888888778888999998765 33 4
Q ss_pred EecCCcEEEEeecCc
Q 038802 332 GTSNGTIFAGRRKKK 346 (532)
Q Consensus 332 g~~dg~i~iw~~~~~ 346 (532)
.+....|.||.-.-.
T Consensus 350 ~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 350 LSYGDHVQIWKDALK 364 (545)
T ss_pred eecCCeeeeehhhhc
Confidence 445558999975443
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=148.19 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=167.9
Q ss_pred EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCC-CcEEEEEeCCCeEEE
Q 038802 85 KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLD-KLHLVSGGDDGIVKF 162 (532)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~-~~~l~s~s~dg~i~i 162 (532)
....+.+|.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|.. ..++++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445678999999999999999999999999999999998888877764 899999999998853 457889999999999
Q ss_pred EECCC----------CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE---------ecCCC
Q 038802 163 WDVAG----------ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME---------VNHGK 223 (532)
Q Consensus 163 wd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~~ 223 (532)
+|+.. ......+..|.+.|..++..|..++.|.+++.||+|+-+|++.......-. ...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99974 234455677999999999999666999999999999999998742211100 01123
Q ss_pred cEEEEEEecCC-CEEEEEc-CCeEEEEEccCCCeeeEEccCC----CcceEEEE-EeccCCCCCccccccEEEEEecCCe
Q 038802 224 PIEDVMFLPSG-GLIATAG-GNSVKIWDLIGGGKMVYSMESH----NKTVTSVC-VGRVGNESGEEAMQYRILSVALDGY 296 (532)
Q Consensus 224 ~v~~i~~~~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~-~~~~~~~~~~~~~~~~l~s~~~dg~ 296 (532)
...++.++|.. .+|+.|+ |-..++||.+...+....-..+ .....|+. |+|.+ + ...+|.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-----------l--kn~~gn 268 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-----------L--KNSQGN 268 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-----------c--cCcccc
Confidence 45788999955 4677777 7799999965331111110000 11111221 22221 1 111121
Q ss_pred EEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 297 MKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+.. ....++-+.|+|+|.-|++.-....|+++++..++..
T Consensus 269 ~~~-------------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 269 LDR-------------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccc-------------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 100 1123567889999988888777778999999887654
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.7e-15 Score=136.01 Aligned_cols=264 Identities=21% Similarity=0.254 Sum_probs=196.7
Q ss_pred ccccCeeEEEEcCCCC--eEEEEEeCCeEEEEeCCCceEEEEe------eccCceeEEEEEccCCCEEEEEcCCCCEEEE
Q 038802 49 GLVSSINSIVFSPTTS--HLFAATHSASLTLFSSQTLEKHSAI------SSFKDVVTCSSFRPDGSLLAASDLSGLIQVF 120 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~--~l~~~~~d~~v~i~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 120 (532)
.-...|++++|.-+++ .+...+.+..+..+..........+ .....+|..++.. |+ .|++|..+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEE
Confidence 4456788888876665 4444446667777776655444332 3345566666653 33 67778889999999
Q ss_pred ECCCCc----eEEEecCCCCCEEEEEeecCCCcEEEEEeCC--CeEEEEECCCCeEEEeccCC---------CCceEEEE
Q 038802 121 DVKSRT----PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD--GIVKFWDVAGESVVLDLFGH---------KDYVRCGD 185 (532)
Q Consensus 121 d~~~~~----~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~i~ 185 (532)
..+.+. .+..+..+ .++..+.-++.....+++|+.. ..+.+||+++.+.+..-..- .-.++++.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 987442 33334433 4566677777567778889998 88999999988666544321 22567888
Q ss_pred EeCCC--CCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccC
Q 038802 186 CSPVN--GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 186 ~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~ 262 (532)
|.+ . ...|++++.-+.+++||.+.+..+.....-...+++++...|++++++++. -+.+..||++.+.-....+.+
T Consensus 210 Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 210 FLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 5 688999999999999999975444333334578999999999999999998 799999999988444555889
Q ss_pred CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecC
Q 038802 263 HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPD 325 (532)
Q Consensus 263 ~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 325 (532)
-.+.|.++..+|. ..+++++|.|..|+|+|+.+.++++..-....++++-+.++
T Consensus 289 ~tGsirsih~hp~---------~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPT---------HPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCC---------CceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 9999999999998 68999999999999999999888877766677777777654
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=6.3e-16 Score=153.45 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=161.0
Q ss_pred CCcccccc--cCCCccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE
Q 038802 34 PESKYWSS--FKPHQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL 108 (532)
Q Consensus 34 ~~~~~w~~--~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 108 (532)
.++.+|+. .....+..|...+.+.+|+|||+.++.++.+ ..|++||+.+++... +....+...+.+|+|||+.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEE
Confidence 56667763 2334567888899999999999999988754 379999998875422 22222334568999999988
Q ss_pred EEEc-CCCCEEEE--ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEe-CCCeEEEEECCCC-eEEEeccCCCCceEE
Q 038802 109 AASD-LSGLIQVF--DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGG-DDGIVKFWDVAGE-SVVLDLFGHKDYVRC 183 (532)
Q Consensus 109 ~~g~-~dg~i~iw--d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 183 (532)
+.++ .+|.+.|| |+.++. ...+..+...+....|+| ++..|+.++ .+|...+|+++.. .....+ .+.. .+
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~ 337 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS 337 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC
Confidence 8764 67766555 665554 455666777788999999 777666544 5788888876432 122222 3333 45
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEcc-CCCeeeEEcc
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLI-GGGKMVYSME 261 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~-~~~~~~~~~~ 261 (532)
..|+| +++.++.++.++ +.+||+.++....... . ....++.|+|+|++++.++ ++.+.+|++. ..+.....+.
T Consensus 338 ~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 338 AQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSS-T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred ccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecC-C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 78999 999998887765 5569998765432221 1 2345678999999999887 7777777753 2236778888
Q ss_pred CCCcceEEEEEecc
Q 038802 262 SHNKTVTSVCVGRV 275 (532)
Q Consensus 262 ~~~~~i~~~~~~~~ 275 (532)
.|.+.+...+|+|.
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 88888899999885
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.4e-13 Score=120.66 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=183.9
Q ss_pred eeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE-EEcCC------CCEEEEECCCCc
Q 038802 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA-ASDLS------GLIQVFDVKSRT 126 (532)
Q Consensus 54 V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d------g~i~iwd~~~~~ 126 (532)
..+++|+.|...+++|..+| .+||+.+..+....-..+.+.+.-+..--..++|| +|+.+ ..+.|||=....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999999888887655 89999887544333333333222222222344555 44433 469999966667
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC-CCeEEEeccCCCCceEEEEEeCCC-CCEEEE-EeCCCeE
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA-GESVVLDLFGHKDYVRCGDCSPVN-GDMFVT-GSYDHTV 203 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s-~s~dg~i 203 (532)
++.++. ...+|.++.+.+ ..+++.- .+.|++|... +.+.++.+.....+---++..|.. ..+||. |-.-|.|
T Consensus 87 ~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 777776 678899999964 3455554 5789999987 455555554332222223334423 334443 4456899
Q ss_pred EEEEcccCCc-eeEEEecCCCcEEEEEEecCCCEEEEEc-CC-eEEEEEccCCCeeeEEccC--CCcceEEEEEeccCCC
Q 038802 204 KLWDVRVENS-KSVMEVNHGKPIEDVMFLPSGGLIATAG-GN-SVKIWDLIGGGKMVYSMES--HNKTVTSVCVGRVGNE 278 (532)
Q Consensus 204 ~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~-~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 278 (532)
++-|+...+. .......|...|.|++.+.+|..+|+++ .| -|+|||..++ ..+.++.. ....|.+++|||+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~--- 237 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPN--- 237 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCC---
Confidence 9999987555 3455558999999999999999999999 55 6999999988 55555542 3457999999999
Q ss_pred CCccccccEEEEEecCCeEEEEECCCceEEE------------------------eee-cCCCeeEEEEecCCCEEEEEe
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGKMKVTH------------------------SMR-FPAPLMSVAFSPDCMTRVIGT 333 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------~~~-~~~~v~~~~~s~~~~~l~~g~ 333 (532)
..+|+++|..|+++||.+....... .+. ..++..-++|..+.+.++..+
T Consensus 238 ------~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 238 ------SSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred ------ccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 7899999999999999876522110 011 123444456666656666667
Q ss_pred cCCcEEEEeecCc
Q 038802 334 SNGTIFAGRRKKK 346 (532)
Q Consensus 334 ~dg~i~iw~~~~~ 346 (532)
.||..+=+.+...
T Consensus 312 ~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 312 ADGSYYKFKFDPK 324 (346)
T ss_pred eCCcEEEEEeccc
Confidence 7777766666544
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=4.8e-15 Score=150.81 Aligned_cols=263 Identities=11% Similarity=0.072 Sum_probs=187.1
Q ss_pred EeCCCceEEEEeeccCceeEEEEEccCC-CEEEEEcCCCCEEEEECCCC-------ceEEEecCCCCCEEEEEeecCCCc
Q 038802 78 FSSQTLEKHSAISSFKDVVTCSSFRPDG-SLLAASDLSGLIQVFDVKSR-------TPLRRLKSHTRPVRFVKYPFLDKL 149 (532)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~i~~~~~~~~~~~ 149 (532)
|+. .|..+..+..|...|..++.+++. .++++|+.||+|++||...- +...++..-...+.++.+.+ +++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGD 1111 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCC
Confidence 553 377888888899999998888754 99999999999999998531 23334444567889999988 889
Q ss_pred EEEEEeCCCeEEEEECCCC--e-----EEEeccCCC-Cc-eEEEEEeCCCCC-EEEEEeCCCeEEEEEcccCCceeEEEe
Q 038802 150 HLVSGGDDGIVKFWDVAGE--S-----VVLDLFGHK-DY-VRCGDCSPVNGD-MFVTGSYDHTVKLWDVRVENSKSVMEV 219 (532)
Q Consensus 150 ~l~s~s~dg~i~iwd~~~~--~-----~~~~~~~~~-~~-v~~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~ 219 (532)
.++.++.||.|.+.+++.. . +......+. +. |..-++...... .++.+..-+.|..||+++.........
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999999999999998752 1 222222222 22 333334332344 788888889999999998544433332
Q ss_pred -cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc-cCCCcceEEEEEeccCCCCCccccccEEEEEe--cC
Q 038802 220 -NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM-ESHNKTVTSVCVGRVGNESGEEAMQYRILSVA--LD 294 (532)
Q Consensus 220 -~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~--~d 294 (532)
...+.|++++.+|.+.+++.|+ .|.+.+||++-. .++... .++..++..+..+|.... ....++++ ..
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~------~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQ------ESVSVSAGSSSN 1264 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCC------CceEEEecccCC
Confidence 2456899999999999999999 799999999976 455444 356678888888876421 24455444 46
Q ss_pred CeEEEEECCCceEEEeeecCC--------------------CeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 295 GYMKVFDYGKMKVTHSMRFPA--------------------PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 295 g~i~iwd~~~~~~~~~~~~~~--------------------~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+.|.+|++.++.+...+-... ......+...+.++.+|++|+.|+.||....+..
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 789999999986665553221 1122334444678999999999999999887654
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.3e-14 Score=133.74 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=183.9
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEE-----cC-----CCCEEEE
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAAS-----DL-----SGLIQVF 120 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-----~~-----dg~i~iw 120 (532)
..+++..+++++|++++.+ .+..++|++..++..+.+... ..++++.|+|-|.+|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3347788999999866655 468899999988865444433 288999999999998762 11 2357799
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCC-CCCEEEE---
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPV-NGDMFVT--- 196 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s--- 196 (532)
+++++.....+......-++..|++ +..+ +.--..+.+.+|++.+.+.+.. .-|...|+.+.++|. ....+|+
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl-~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSI-DESL-AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCccccccc-chhh-hhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEcc
Confidence 9998555444443322226888887 5443 3222345688888765332211 123444555555552 1122222
Q ss_pred --EeCCCeEEE---------------------------------------------------------EEcccCCceeEE
Q 038802 197 --GSYDHTVKL---------------------------------------------------------WDVRVENSKSVM 217 (532)
Q Consensus 197 --~s~dg~i~i---------------------------------------------------------wd~~~~~~~~~~ 217 (532)
++.-+.+++ .++.. .....
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g--~s~~V 265 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG--ESVSV 265 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC--ceEEE
Confidence 111223333 33331 23333
Q ss_pred EecCCCcEEEEEEecCCCEEEEEcC---CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecC
Q 038802 218 EVNHGKPIEDVMFLPSGGLIATAGG---NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD 294 (532)
Q Consensus 218 ~~~~~~~v~~i~~~~~~~~l~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d 294 (532)
.....++|.++.|+|+++-++++.+ ..+.|||++. .++..+ ..++-+++-|+|. +.+++.+|.+
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~---------g~ii~lAGFG 332 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPH---------GNIILLAGFG 332 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCC---------CCEEEEeecC
Confidence 4456789999999999987777653 5899999875 455555 3567789999999 5677777764
Q ss_pred ---CeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEec------CCcEEEEeecCcccc
Q 038802 295 ---GYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTS------NGTIFAGRRKKKENV 349 (532)
Q Consensus 295 ---g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~iw~~~~~~~~ 349 (532)
|.|-|||+.+.+++..+.... -+-+.|+|||++++|++. |+.++||+.....-.
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred CCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 889999999998888876443 356789999999999875 688999999876433
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=4.4e-14 Score=124.16 Aligned_cols=274 Identities=14% Similarity=0.131 Sum_probs=198.0
Q ss_pred cccCeeEEEEcCCCCeEEEE-EeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE-EEcCCCCEEEEECCCCce
Q 038802 50 LVSSINSIVFSPTTSHLFAA-THSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA-ASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~ 127 (532)
.-+.|..+.|..|.-+++++ ..++.|.+|++...+-...+....+++..++|+|||+.|. +..-+-.|.+|.+.+.+.
T Consensus 47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 35678889999988876665 5578999999999888888988899999999999996555 566688999999987665
Q ss_pred EEEecCCCCCEEEEEeecCCCcEEEEEeC------------------------------------CCeEEEEECCCCeEE
Q 038802 128 LRRLKSHTRPVRFVKYPFLDKLHLVSGGD------------------------------------DGIVKFWDVAGESVV 171 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~~~~~~~l~s~s~------------------------------------dg~i~iwd~~~~~~~ 171 (532)
... +-.+..+..++|+| ++++.+.++. +..+.+||---.-.+
T Consensus 127 ~~~-~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 127 YLL-PHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred EEe-cccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee
Confidence 432 32344567888988 8877666542 234555653222222
Q ss_pred EeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC---------------------------------------
Q 038802 172 LDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN--------------------------------------- 212 (532)
Q Consensus 172 ~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------------------------------------- 212 (532)
..+. -.-.+..+.|+| .+++++.|++|+.+++.+--+.+
T Consensus 205 ~aYe-~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 205 YAYE-RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred eeee-eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 2221 234678899999 99999999999998875521000
Q ss_pred -------------------ceeEE--E-----ecCCCcEEEEEEecCCCEEEEEcC---CeEEEEEccCCCeeeEEccCC
Q 038802 213 -------------------SKSVM--E-----VNHGKPIEDVMFLPSGGLIATAGG---NSVKIWDLIGGGKMVYSMESH 263 (532)
Q Consensus 213 -------------------~~~~~--~-----~~~~~~v~~i~~~~~~~~l~~~~d---~~i~iwd~~~~~~~~~~~~~~ 263 (532)
..... . .+....+.-++|++|..++++-.| +.+-+||++.. +. ...-..
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l-~avLiQ 360 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-KL-HAVLIQ 360 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-hh-hhhhhh
Confidence 00000 0 012335667899999999999886 47999999875 33 333345
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcE
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTI 338 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 338 (532)
..+|....|.|. ...++.+.....+++|......++..-...-.|..+.|.-+|..++..+.|-.-
T Consensus 361 k~piraf~WdP~---------~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 361 KHPIRAFEWDPG---------RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred ccceeEEEeCCC---------CceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 668999999998 556777777778999998887666665555789999999999999999988643
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.8e-15 Score=129.83 Aligned_cols=229 Identities=14% Similarity=0.214 Sum_probs=163.9
Q ss_pred ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC----
Q 038802 94 DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE---- 168 (532)
Q Consensus 94 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---- 168 (532)
..+..++|++.-..+|++..|-.|++||-.+ ++...++ .....|+|++|.|.....|+.|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4678899999777788999999999999776 4444554 3456899999999777878888764 5899976421
Q ss_pred eE----------EEeccCCCCceEEEEEeCCCCCEEEEEeC-CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEE
Q 038802 169 SV----------VLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLI 237 (532)
Q Consensus 169 ~~----------~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 237 (532)
.. +....+| .+|+++.|.+ ++..+++++. |..|.+||..++....... ...+.+.-+.|||||.++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEE
Confidence 11 1222345 6899999999 8999998886 5679999999987776664 446788899999999999
Q ss_pred EEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc-----------
Q 038802 238 ATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM----------- 305 (532)
Q Consensus 238 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------- 305 (532)
.++. |+..++|..........-.- ..+.|...+|+|.| ..+|++++..-.++-......
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcG--------sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCG--------SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCC--------CEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence 9988 99999997654433333232 34489999999997 456666665544433222110
Q ss_pred e--EEEee------e----cCCCeeEEEEecCCCEEEEEecCC
Q 038802 306 K--VTHSM------R----FPAPLMSVAFSPDCMTRVIGTSNG 336 (532)
Q Consensus 306 ~--~~~~~------~----~~~~v~~~~~s~~~~~l~~g~~dg 336 (532)
+ ++..+ . ..+++.+++|.|.|.+|++.-..+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0 01111 0 235788999999999999876544
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=6.8e-15 Score=137.26 Aligned_cols=251 Identities=18% Similarity=0.201 Sum_probs=173.1
Q ss_pred eEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEE----EeeccCceeEEEEE-----ccCCCEEEEEcCCCCEEEEECCCC
Q 038802 55 NSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS----AISSFKDVVTCSSF-----RPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
....++-.|.+|+.. ....+++|+...+.... ...-.....+|-+| .|++--+..|-.-|.|.+.|....
T Consensus 127 ~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 344444445555433 23567788766322111 11111122344445 346667888888899999987653
Q ss_pred ceEEEec----CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC--------------Ce--------------EEEe
Q 038802 126 TPLRRLK----SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG--------------ES--------------VVLD 173 (532)
Q Consensus 126 ~~~~~~~----~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~--------------~~~~ 173 (532)
+..+.+. -.+..|+|+.|-|.+...++++-.+|.+++||... +. ++..
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 2222121 13578999999997888888899999999997631 10 1111
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccC
Q 038802 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIG 252 (532)
Q Consensus 174 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~ 252 (532)
.....+.|...+|+| ++.+||+.+.||.++|||..+.+...... .--+...|++|||||+++++|+ |+-|.||.+..
T Consensus 286 w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 112345788899999 99999999999999999998855444433 3456789999999999999999 99999999988
Q ss_pred CCeeeEEccCCCcceEEEEEeccCCCCC----------------------------c-----------cccccEEEEEec
Q 038802 253 GGKMVYSMESHNKTVTSVCVGRVGNESG----------------------------E-----------EAMQYRILSVAL 293 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------------~-----------~~~~~~l~s~~~ 293 (532)
. +.+..-++|.+.|..++|.|-..... . .....++.+.+.
T Consensus 364 r-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq 442 (636)
T KOG2394|consen 364 R-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ 442 (636)
T ss_pred c-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence 7 89999999999999999984211000 0 013467889999
Q ss_pred CCeEEEEECCCceEEE
Q 038802 294 DGYMKVFDYGKMKVTH 309 (532)
Q Consensus 294 dg~i~iwd~~~~~~~~ 309 (532)
|-.+.+||+....+..
T Consensus 443 DTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 443 DTQLCLWDLTEDVLVP 458 (636)
T ss_pred cceEEEEecchhhccc
Confidence 9999999998755443
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.6e-14 Score=125.46 Aligned_cols=245 Identities=20% Similarity=0.285 Sum_probs=176.1
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce-----EEEEeeccC------------ceeEEEEEccCC--CEEE
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE-----KHSAISSFK------------DVVTCSSFRPDG--SLLA 109 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 109 (532)
...+-|.++.|...|.+|++|..+|+|.+|.-.... ....++.|. ..|..+.|.+++ ..++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345678999999999999999999999999643322 233344443 468889998865 4566
Q ss_pred EEcCCCCEEEEECCCCce-----------------------------------EEEe-cCCCCCEEEEEeecCCCcEEEE
Q 038802 110 ASDLSGLIQVFDVKSRTP-----------------------------------LRRL-KSHTRPVRFVKYPFLDKLHLVS 153 (532)
Q Consensus 110 ~g~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~h~~~i~~~~~~~~~~~~l~s 153 (532)
..+.|.+|++|.+..... .+.+ ..|+.-|.++.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 777899999998743210 0111 25788899999987 6666665
Q ss_pred EeCCCeEEEEECCCCe---EEEeccCC-----CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce----eEEEe--
Q 038802 154 GGDDGIVKFWDVAGES---VVLDLFGH-----KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK----SVMEV-- 219 (532)
Q Consensus 154 ~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~-- 219 (532)
+ +|=.|.+|+++-.. .+..++.+ +.-|++..|+|...+.|+-.+..|+|++-|+|..... ..+..
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5 67899999986322 12223333 3568899999988889999999999999999853111 11110
Q ss_pred ---------cCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCc---------------ceEEEEEecc
Q 038802 220 ---------NHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNK---------------TVTSVCVGRV 275 (532)
Q Consensus 220 ---------~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~i~~~~~~~~ 275 (532)
+--..|..+.|+++|+++++-+=-+|++||+....+++.+..-|.. .-..++|+.+
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1234688999999999999877789999999766677777766642 1234677766
Q ss_pred CCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 276 GNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 276 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
+.+++||+....+++++...
T Consensus 341 ---------~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 341 ---------DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred ---------cceEecccccceEEEecCCC
Confidence 67999999999999999554
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.4e-13 Score=136.96 Aligned_cols=230 Identities=20% Similarity=0.234 Sum_probs=156.6
Q ss_pred Ccccccc--cCCCccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE
Q 038802 35 ESKYWSS--FKPHQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA 109 (532)
Q Consensus 35 ~~~~w~~--~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 109 (532)
.+.+|+. ..+..+..+...+.+.+|+|||+.++.++.+ ..|++||+.+++.. .+..+.+...+..|+|||+.|+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEE
Confidence 4555653 2344567788889999999999999987743 47999999877653 3334445556789999999876
Q ss_pred -EEcCCC--CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CCe--EEEEECCCCeEEEeccCCCCceEE
Q 038802 110 -ASDLSG--LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DGI--VKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 110 -~g~~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
+.+.+| .|++||+.+++. ..+..+.......+|+| ++..++.++. +|. |.++|+.+++... +..+......
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~ 340 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR 340 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 445555 599999988764 44555655667889999 8887776664 444 7777877765433 2223344557
Q ss_pred EEEeCCCCCEEEEEeCCC---eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C---CeEEEEEccCCCee
Q 038802 184 GDCSPVNGDMFVTGSYDH---TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G---NSVKIWDLIGGGKM 256 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~ 256 (532)
.+|+| +++.++..+.++ .|.+||+.++... .+ .+........|+|+|+.++..+ + +.+.++++.. ..
T Consensus 341 ~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--~~ 414 (433)
T PRK04922 341 ASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG--RV 414 (433)
T ss_pred EEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--Cc
Confidence 89999 888888765443 5999999775443 22 2333455679999999877665 2 3577777743 34
Q ss_pred eEEccCCCcceEEEEEec
Q 038802 257 VYSMESHNKTVTSVCVGR 274 (532)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~ 274 (532)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 555555556677777765
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.4e-13 Score=134.68 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=157.8
Q ss_pred Ccccccc--cCCCccCccccCeeEEEEcCCCCeEEEEEe---CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE
Q 038802 35 ESKYWSS--FKPHQIPGLVSSINSIVFSPTTSHLFAATH---SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA 109 (532)
Q Consensus 35 ~~~~w~~--~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 109 (532)
++.+|+. .....+..+...+.+.+|+|||+.++..+. +..+++|++.+++... +....+.+....|+|||+.|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEE
Confidence 4455553 234456667778999999999998887653 3579999998875433 223334455789999999888
Q ss_pred EE-cCCC--CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCC-C--eEEEEECCCCeEEEeccCCCCceEE
Q 038802 110 AS-DLSG--LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD-G--IVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 110 ~g-~~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
.. +.+| .|++||+.+++... +..+...+....|+| +++.|+.++.+ + .|.++|+.++... .+..+.....+
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 54 4455 58899998876544 444455678899999 88877766654 3 4555677766543 33334444567
Q ss_pred EEEeCCCCCEEEEEeCC---CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC---eEEEEEccCCCee
Q 038802 184 GDCSPVNGDMFVTGSYD---HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN---SVKIWDLIGGGKM 256 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~---~i~iwd~~~~~~~ 256 (532)
..|+| +++.++..+.+ ..|.+||+.++..... . ......+..|+|||+.++.++ ++ .+.++++.. ..
T Consensus 336 ~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~ 409 (429)
T PRK03629 336 ADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVL-T--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RF 409 (429)
T ss_pred EEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEe-C--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CC
Confidence 88999 88888776543 3588899887643322 2 122345678999999888877 44 367777643 45
Q ss_pred eEEccCCCcceEEEEEecc
Q 038802 257 VYSMESHNKTVTSVCVGRV 275 (532)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~ 275 (532)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 5667778888888888873
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.61 E-value=1.1e-13 Score=122.52 Aligned_cols=246 Identities=13% Similarity=0.219 Sum_probs=184.2
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEe-CCCceEEEEee-ccCceeEEEEEccCCCEEEEEcCCCCEEEEEC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFS-SQTLEKHSAIS-SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 122 (532)
..+.||.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. .-..+++++.+.++...|++|-..|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 34689999999999999988999999999999994 34444433332 23478999999999999999999999988866
Q ss_pred C----CCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 123 K----SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 123 ~----~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
. .....+.+..|...+..+.|+. ....+++.+.|..+.---.+.+..+..+.- ...-+++.+.- .+...|.
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd 172 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA---LYAFVGD 172 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee---EEEEecc
Confidence 3 3455666778999999999987 788899999998876554555443322211 11111222211 1455566
Q ss_pred CCCeEEEEEcccCCceeEE-EecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccC
Q 038802 199 YDHTVKLWDVRVENSKSVM-EVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
..|.|..-.+.......+. ..+|...+.+++|.|....+.++. |..+.+||+.........+.+|...|..++..+.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~- 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH- 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh-
Confidence 6666666655543333333 347999999999999999999988 8999999998766677888899999999988777
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCC
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
...+++++.||.|.+||++.
T Consensus 252 --------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 --------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred --------heeeeeccCCCeEEEEeccc
Confidence 67899999999999999764
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.7e-13 Score=131.10 Aligned_cols=232 Identities=12% Similarity=0.119 Sum_probs=154.1
Q ss_pred eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc---CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD---LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
.|.++|.+.... +.+..+...+.+.+|+|||+.|+..+ .+..|.+|++.+++... +....+.+....|+| ++..
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCE
Confidence 788898875443 34455677899999999999998653 24579999998875433 222333445689999 7776
Q ss_pred EEEE-eCCC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC-CeEEEE--EcccCCceeEEEecCCCc
Q 038802 151 LVSG-GDDG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD-HTVKLW--DVRVENSKSVMEVNHGKP 224 (532)
Q Consensus 151 l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d-g~i~iw--d~~~~~~~~~~~~~~~~~ 224 (532)
|+.. +.+| .|.+||+.+++.... ..+...+....|+| +++.|+..+.+ +...+| |+.++.... +. .....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt-~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEE-ee-cCCCC
Confidence 6654 4455 599999988776543 33445677899999 88888776654 444444 665543322 22 23445
Q ss_pred EEEEEEecCCCEEEEEc--C--CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe---E
Q 038802 225 IEDVMFLPSGGLIATAG--G--NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY---M 297 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~--d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~---i 297 (532)
..+..|+|+|+.++..+ + ..|.+||+.++. . ..+... .......|+|+ +.+++.++.++. +
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~-~~Lt~~-~~~~~p~~SpD---------G~~i~~~s~~~~~~~l 400 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLTDT-FLDETPSIAPN---------GTMVIYSSSQGMGSVL 400 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEeCCC-CCCCCceECCC---------CCEEEEEEcCCCceEE
Confidence 56789999999887765 2 368889987763 2 223221 22346789999 567777776654 7
Q ss_pred EEEECCCceEEEeeecCCCeeEEEEec
Q 038802 298 KVFDYGKMKVTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~v~~~~~s~ 324 (532)
.++++..........+++.+...+|+|
T Consensus 401 ~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCCcCCcccCC
Confidence 777875444333333677888889987
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.6e-13 Score=134.11 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=154.9
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCc
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKL 149 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 149 (532)
..|.+||... ...+.+..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+..|+| ++.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCC
Confidence 3688999864 4445566677889999999999999977633 469999998776533 333445556789999 776
Q ss_pred EE-EEEeCCC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CCe--EEEEEcccCCceeEEEecCCC
Q 038802 150 HL-VSGGDDG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DHT--VKLWDVRVENSKSVMEVNHGK 223 (532)
Q Consensus 150 ~l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~ 223 (532)
.+ ++.+.+| .|++||+.+++.. .+..+.......+|+| +++.++.++. +|. |.++|+.++..... . .+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t-~~g~ 336 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERL-T-FQGN 336 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-e-cCCC
Confidence 55 4556665 5999999887654 4555555566789999 8888777664 444 66666665443322 2 2233
Q ss_pred cEEEEEEecCCCEEEEEc-C-C--eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec---CCe
Q 038802 224 PIEDVMFLPSGGLIATAG-G-N--SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL---DGY 296 (532)
Q Consensus 224 ~v~~i~~~~~~~~l~~~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~ 296 (532)
.....+|+|+|+.++..+ + + .|.+||+.++ ... .+. +........|+|+| ..++..+. .+.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~~~~~p~~spdG---------~~i~~~s~~~g~~~ 404 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGSLDESPSFAPNG---------SMVLYATREGGRGV 404 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCCCCCCceECCCC---------CEEEEEEecCCceE
Confidence 455789999999888764 3 2 6999998766 332 332 22244567899994 55554444 245
Q ss_pred EEEEECCCceEEEeee-cCCCeeEEEEec
Q 038802 297 MKVFDYGKMKVTHSMR-FPAPLMSVAFSP 324 (532)
Q Consensus 297 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 324 (532)
|.++++.... ...+. +.+.+...+|+|
T Consensus 405 L~~~~~~g~~-~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV-RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence 8888885543 33333 456677778876
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.8e-13 Score=135.67 Aligned_cols=221 Identities=18% Similarity=0.204 Sum_probs=149.0
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE-EEcCCCCEEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA-ASDLSGLIQVF 120 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iw 120 (532)
..+..+...+.+.+|+|||+.++.++.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4456778899999999999999887643 469999998886543 333445667899999999887 45677776666
Q ss_pred E--CCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CCeEEEEE--CCCCeEEEeccCCCCceEEEEEeCCCCCEEE
Q 038802 121 D--VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DGIVKFWD--VAGESVVLDLFGHKDYVRCGDCSPVNGDMFV 195 (532)
Q Consensus 121 d--~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 195 (532)
. +.++. ...+..+.+......|+| ++..++..+. +|...+|. +.++...... .+........|+| ++++++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 5 44443 455655666667788999 8877776554 45555554 4454432222 2223344678999 999988
Q ss_pred EEeCCC---eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CC--eEEEEEccCCCeeeEEccCCCcceE
Q 038802 196 TGSYDH---TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GN--SVKIWDLIGGGKMVYSMESHNKTVT 268 (532)
Q Consensus 196 s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~ 268 (532)
..+.++ .|.+||+.++...... .........|+|+|+.|+.++ +| .+.+.++. + .....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCC
Confidence 777654 6999999876543222 223346789999999888776 33 35566653 2 44555555666777
Q ss_pred EEEEecc
Q 038802 269 SVCVGRV 275 (532)
Q Consensus 269 ~~~~~~~ 275 (532)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 7788764
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.8e-13 Score=132.15 Aligned_cols=233 Identities=14% Similarity=0.160 Sum_probs=150.9
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCc
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKL 149 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 149 (532)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+| ++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCC
Confidence 367778864 44445566677889999999999999876542 359999998886543 333445567889999 776
Q ss_pred EEE-EEeCCCeEEEE--ECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CCeEEEEEcc--cCCceeEEEecCCC
Q 038802 150 HLV-SGGDDGIVKFW--DVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DHTVKLWDVR--VENSKSVMEVNHGK 223 (532)
Q Consensus 150 ~l~-s~s~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~~~~~~~~~~ 223 (532)
.|+ +.+.+|...+| |+.++. ...+..+........|+| +++.++..+. +|...+|.+. ++.. .... ....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-~~g~ 328 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT-FTGS 328 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEe-cCCC
Confidence 665 56778776665 454444 445555555667788999 8887776554 4666677654 3222 2222 2233
Q ss_pred cEEEEEEecCCCEEEEEc-CC---eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec-CC--e
Q 038802 224 PIEDVMFLPSGGLIATAG-GN---SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL-DG--Y 296 (532)
Q Consensus 224 ~v~~i~~~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~ 296 (532)
......|+|+|++++..+ ++ .|.+||+.++ ... .+... .......|+|++ ..|+.++. .| .
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~~-~lt~~-~~~~~p~~spdg---------~~l~~~~~~~g~~~ 396 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QVT-ALTDT-TRDESPSFAPNG---------RYILYATQQGGRSV 396 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-CeE-EccCC-CCccCceECCCC---------CEEEEEEecCCCEE
Confidence 345678999999988765 32 6999998876 322 23222 234678999994 45555544 33 3
Q ss_pred EEEEECCCceEEEeee-cCCCeeEEEEecC
Q 038802 297 MKVFDYGKMKVTHSMR-FPAPLMSVAFSPD 325 (532)
Q Consensus 297 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~ 325 (532)
+.+.++ ++.....+. ..+.+...+|+|-
T Consensus 397 l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 555566 344444444 4466777788873
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-12 Score=129.79 Aligned_cols=231 Identities=15% Similarity=0.151 Sum_probs=158.5
Q ss_pred eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC---CCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL---SGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
.|.++|.. +...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+| ++..
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~~ 259 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGRK 259 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCCE
Confidence 78888875 4445567778889999999999999887653 468999999887653 4445667778899999 7766
Q ss_pred E-EEEeCCCe--EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CC--eEEEEEcccCCceeEEEecCCCc
Q 038802 151 L-VSGGDDGI--VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DH--TVKLWDVRVENSKSVMEVNHGKP 224 (532)
Q Consensus 151 l-~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 224 (532)
| ++.+.++. |.+||+.++... .+..+........|+| +++.++..+. +| .|.++|+..+..... . .+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t-~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRI-S-FGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEe-e-cCCCc
Confidence 5 45666655 778898877653 4555666677899999 8888877664 33 588888766443332 2 23455
Q ss_pred EEEEEEecCCCEEEEEc-C---CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec-C-----
Q 038802 225 IEDVMFLPSGGLIATAG-G---NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL-D----- 294 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~-d----- 294 (532)
+....|+|+|+.++... + ..|.+||+.++. ...+. ....+....|+|+| ..++..+. .
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt-~~~~~~~p~~spDG---------~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERILT-SGFLVEGPTWAPNG---------RVIMFFRQTPGSGGA 403 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--eEecc-CCCCCCCCeECCCC---------CEEEEEEccCCCCCc
Confidence 67789999999888765 2 268888875542 22232 22346788999995 44544333 2
Q ss_pred CeEEEEECCCceEEEeeecCCCeeEEEEec
Q 038802 295 GYMKVFDYGKMKVTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 295 g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 324 (532)
..+.++|+..+.. ..+..++.+...+|+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCcccCC
Confidence 3588888876654 3444455566777776
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.7e-13 Score=122.08 Aligned_cols=242 Identities=15% Similarity=0.156 Sum_probs=185.4
Q ss_pred CceeEEEEEccCCC--EEEEEcCCCCEEEEECCCCceEEEe------cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 93 KDVVTCSSFRPDGS--LLAASDLSGLIQVFDVKSRTPLRRL------KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 93 ~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~------~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
...|+.++|.-+++ .+..++.+..+..+.+....+.... ....++|..++.. ...|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence 45778888876553 4555556667777777655444332 3456677777764 34688889999999999
Q ss_pred CCCCe----EEEeccCCCCceEEEEEeCCCCCEEEEEeCC--CeEEEEEcccCCceeEEEe--------c--CCCcEEEE
Q 038802 165 VAGES----VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD--HTVKLWDVRVENSKSVMEV--------N--HGKPIEDV 228 (532)
Q Consensus 165 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~--------~--~~~~v~~i 228 (532)
...+. .+..+..+ ..+..+.-++....++++|+.. ..+.+||+.+. ..++.- + -.-.++++
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccc
Confidence 87432 22233323 4455666667677888889998 88999999875 333321 1 12345678
Q ss_pred EEecC--CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 229 MFLPS--GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 229 ~~~~~--~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
.|-+. ...+++++ -+.+++||.+.+.+++..+.....+++++...|. +.++++|..-|.+..||++.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~---------gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS---------GNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC---------CcEEEEecccchhheecccCc
Confidence 88887 77888888 7999999999988999999999999999999999 678999999999999999999
Q ss_pred eEEEe-ee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 306 KVTHS-MR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 306 ~~~~~-~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+.... ++ ..+.|.++..+|.++++++++-|..|+|+|.++.+..
T Consensus 280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 98866 54 6789999999999999999999999999999996543
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=3.5e-14 Score=132.58 Aligned_cols=137 Identities=26% Similarity=0.397 Sum_probs=115.2
Q ss_pred ccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCC--------------ce--------------EEEEeeccCceeEEEEE
Q 038802 51 VSSINSIVFSPTTS-HLFAATHSASLTLFSSQT--------------LE--------------KHSAISSFKDVVTCSSF 101 (532)
Q Consensus 51 ~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~--------------~~--------------~~~~~~~~~~~v~~~~~ 101 (532)
...|+|+.|-|.++ .++++-.+|.+++||..- +. ++..+.-..+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999765 455566789999997421 11 11111222457889999
Q ss_pred ccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce
Q 038802 102 RPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV 181 (532)
Q Consensus 102 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 181 (532)
+|||++||+.+.||.++|||..+.+.+..++..-+...|++|+| |+++|++|++|--|.||.+..++.+..-.+|...|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 99999999999999999999999888888888888999999999 99999999999999999999999999999999999
Q ss_pred EEEEEeC
Q 038802 182 RCGDCSP 188 (532)
Q Consensus 182 ~~i~~~~ 188 (532)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999983
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=130.68 Aligned_cols=257 Identities=19% Similarity=0.221 Sum_probs=190.2
Q ss_pred eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCC-CcEEEEEeCCCeEE
Q 038802 84 EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLD-KLHLVSGGDDGIVK 161 (532)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~-~~~l~s~s~dg~i~ 161 (532)
.....+..|.+.|..+.|+..|..|++|+.|..|.+||..+++....+. +|...|....|-|.. ..-+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3445678899999999999999999999999999999999887776664 788888888887743 34689999999999
Q ss_pred EEECCCCe-E--EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe--cCCC---cEEEEEEecC
Q 038802 162 FWDVAGES-V--VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV--NHGK---PIEDVMFLPS 233 (532)
Q Consensus 162 iwd~~~~~-~--~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~---~v~~i~~~~~ 233 (532)
+=.+.... + ...+..|.++|.-++.-|....-|.+++.|+.+.-+|+++......+.. .+.. ...+++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87764332 2 3345679999999999998888999999999999999998655443332 2333 5678899995
Q ss_pred CC-EEEEEc-CCeEEEEEccCCCe-----eeEEcc------CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEE
Q 038802 234 GG-LIATAG-GNSVKIWDLIGGGK-----MVYSME------SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 234 ~~-~l~~~~-d~~i~iwd~~~~~~-----~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
.. .+++++ |..+++||.+.-.+ .+..+. ...-.|++++++.++ +. +.++-.|-.|+++
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--------sE-lLaSYnDe~IYLF 363 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG--------SE-LLASYNDEDIYLF 363 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc--------cc-eeeeecccceEEe
Confidence 55 677777 88999999874321 122222 223469999999875 34 5555567789998
Q ss_pred ECCC--c----------eEEEe-ee-cC--CCeeEEE-EecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 301 DYGK--M----------KVTHS-MR-FP--APLMSVA-FSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 301 d~~~--~----------~~~~~-~~-~~--~~v~~~~-~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.-.- + ..+.. ++ |. ..|..+- |.|...|+++|+.=|.|+||+.++++..
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 5332 2 11112 33 22 3466665 4688899999999999999999988765
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.5e-13 Score=117.51 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=111.7
Q ss_pred EEEEeCCCCCEEEEEeC----------CCeEEEEEcccC-CceeEEEecCCCcEEEEEEecCCCEEEEEc---CCeEEEE
Q 038802 183 CGDCSPVNGDMFVTGSY----------DHTVKLWDVRVE-NSKSVMEVNHGKPIEDVMFLPSGGLIATAG---GNSVKIW 248 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~----------dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---d~~i~iw 248 (532)
.+.|+| +|++|+.-.. -|...+|.++.. ...........++|.+++|+|+|+.+++.. +..|.+|
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 567887 6766554332 134556655432 234444445566899999999999776553 4689999
Q ss_pred EccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec---CCeEEEEECCCceEEEeeecCCCeeEEEEecC
Q 038802 249 DLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL---DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPD 325 (532)
Q Consensus 249 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 325 (532)
|++ . +.+..+. ...+..+.|+|+ +.++++++. .|.|.+||.++.+.+....+.. ++.++|+||
T Consensus 89 d~~-~-~~i~~~~--~~~~n~i~wsP~---------G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPd 154 (194)
T PF08662_consen 89 DVK-G-KKIFSFG--TQPRNTISWSPD---------GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPD 154 (194)
T ss_pred cCc-c-cEeEeec--CCCceEEEECCC---------CCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCC
Confidence 996 3 5666654 456789999999 567887764 4679999999999998887764 689999999
Q ss_pred CCEEEEEec------CCcEEEEeecCccc
Q 038802 326 CMTRVIGTS------NGTIFAGRRKKKEN 348 (532)
Q Consensus 326 ~~~l~~g~~------dg~i~iw~~~~~~~ 348 (532)
|+++++++. |+.++||++.....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCeEe
Confidence 999999875 78899999976543
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-12 Score=122.87 Aligned_cols=281 Identities=15% Similarity=0.126 Sum_probs=195.6
Q ss_pred cCeeEEEEcCCCCeEEEEEe-----------CCeEEEEeCCCceEEEEeeccCc--ee-EEEEEccCCCEEEEEcCCCCE
Q 038802 52 SSINSIVFSPTTSHLFAATH-----------SASLTLFSSQTLEKHSAISSFKD--VV-TCSSFRPDGSLLAASDLSGLI 117 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~-----------d~~v~i~~~~~~~~~~~~~~~~~--~v-~~~~~~~~~~~l~~g~~dg~i 117 (532)
-.|.-+.|||+.+||++-+. ...+.|||+.+|...+.+....+ .+ .-+.||.|++++|.-.. .+|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 36889999999999999763 25899999999999888876332 22 34689999999997765 569
Q ss_pred EEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-----CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCC
Q 038802 118 QVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-----DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGD 192 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 192 (532)
.||+..+..++..-.-.-..|....|+| .++.|+.-+. -..+.+-.+.+++.+++..-|.-.=..+.|-. +|+
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gd 406 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGD 406 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCc
Confidence 9999876444433333456788899999 7777775432 23577777788877777665554444566665 777
Q ss_pred EEEEEe----------CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC----CeEEEEEccCC-C--e
Q 038802 193 MFVTGS----------YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG----NSVKIWDLIGG-G--K 255 (532)
Q Consensus 193 ~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d----~~i~iwd~~~~-~--~ 255 (532)
+|+.-- .-..+.|+.++. +.+++........|...+|-|.|..+++-+. .++.+|-+.+. . .
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrire-KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIRE-KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeec-cCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 776532 112356676664 3455556677889999999999987766552 48999988732 2 2
Q ss_pred eeEEccCCCcceEEEEEeccCCCCCccccccEEEEE---ecCCeEEEEECCC--ceEEEeeecCCCeeEEEEecCCCEEE
Q 038802 256 MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV---ALDGYMKVFDYGK--MKVTHSMRFPAPLMSVAFSPDCMTRV 330 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~ 330 (532)
++..+. ....+.+.|+|.| .+++.+ |..|.+.++|... .+.+....| ...+.+.|.|.|+|++
T Consensus 486 lVk~~d--k~~~N~vfwsPkG---------~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 486 LVKELD--KKFANTVFWSPKG---------RFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVV 553 (698)
T ss_pred hhhhhc--ccccceEEEcCCC---------cEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEE
Confidence 333333 3567899999994 555554 4478999999874 333333333 3457889999999999
Q ss_pred EEec------CCcEEEEeecCccc
Q 038802 331 IGTS------NGTIFAGRRKKKEN 348 (532)
Q Consensus 331 ~g~~------dg~i~iw~~~~~~~ 348 (532)
++++ |...++|++.....
T Consensus 554 T~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EeeehhhhccccceEEEEeecHHH
Confidence 9986 44577888877643
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.9e-12 Score=112.45 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCeEEEEeCCCceEEE--Ee-eccCceeEEEEEcc---CCC-EEEEEcCCCCEEEEECCCCceEEEecCCC------CCE
Q 038802 72 SASLTLFSSQTLEKHS--AI-SSFKDVVTCSSFRP---DGS-LLAASDLSGLIQVFDVKSRTPLRRLKSHT------RPV 138 (532)
Q Consensus 72 d~~v~i~~~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~i 138 (532)
.|.+.+|++...+... ++ ......+..+.|+. +|. .++-+...|.|.++..........+.+-+ ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887654433 11 22245667777764 555 55666778999999876544444443321 124
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCeE--EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc-ee
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV--VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS-KS 215 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~ 215 (532)
.++.|++ .+..++++-.+|.+.+-+...... ++..+.|.-......|+..+++++++|+.|+.+..||+|.++. .-
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 5778888 788899999999998666554433 3477899999999999987889999999999999999995432 22
Q ss_pred EEEecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec
Q 038802 216 VMEVNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293 (532)
Q Consensus 216 ~~~~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~ 293 (532)
....-|...|.+|.-+| .+.++++|+ |..|++||.++.++++..-. -.+.|+.+..+|.. ...++.++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~--------~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEI--------FHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchh--------hhHHHHHHH
Confidence 22346888999998887 577999999 99999999998777776654 35789999999974 234445555
Q ss_pred CCeEEEEECCCceEE-----Eeee-cCCCeeEEEEecCCCEEEEEe-cCCcEE-EEeecCc
Q 038802 294 DGYMKVFDYGKMKVT-----HSMR-FPAPLMSVAFSPDCMTRVIGT-SNGTIF-AGRRKKK 346 (532)
Q Consensus 294 dg~i~iwd~~~~~~~-----~~~~-~~~~v~~~~~s~~~~~l~~g~-~dg~i~-iw~~~~~ 346 (532)
-.-.+|-+.+..... ...+ |.+-+..-.|.....++++++ .|..++ +|-..++
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 555677776653222 2222 555566666754445677754 455544 6765544
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=5.7e-13 Score=115.62 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=166.9
Q ss_pred cCeeEEEEcC---CCC-eEEEEEeCCeEEEEeCCCceEEEEeeccC------ceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 52 SSINSIVFSP---TTS-HLFAATHSASLTLFSSQTLEKHSAISSFK------DVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 52 ~~V~~i~~sp---~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
+.+..+.|.. +|. .++-+-..|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455566643 344 45566678899999766544444443321 1246788999999999999999999666
Q ss_pred CCCCce--EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC-CCeEEEe-ccCCCCceEEEEEeCCCCCEEEEE
Q 038802 122 VKSRTP--LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA-GESVVLD-LFGHKDYVRCGDCSPVNGDMFVTG 197 (532)
Q Consensus 122 ~~~~~~--~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~ 197 (532)
...... ++.++.|..+++...|+..+.+.+++||+|+.+..||++ .++.+.. ...|...|.+|.-+|..+.+++||
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 555443 347889999999999998788999999999999999998 3344433 466899999999999788999999
Q ss_pred eCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCC--CEEEEEcCCeEEEEEccCCC-e---eeEEccCCCcceEEEE
Q 038802 198 SYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG--GLIATAGGNSVKIWDLIGGG-K---MVYSMESHNKTVTSVC 271 (532)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~d~~i~iwd~~~~~-~---~~~~~~~~~~~i~~~~ 271 (532)
++|-.|++||.|+.. .+.+...-.+.|+.+..+|.- .+++++--+..+|-+...+. + .......|.+-+..-.
T Consensus 230 sYDe~i~~~DtRnm~-kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMG-KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred ccccceeeeehhccc-CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 999999999999643 333333556899999999943 34555444555666655432 2 3344456666666666
Q ss_pred EeccCCCCCccccccEEEEEec-CCeEE-EEE
Q 038802 272 VGRVGNESGEEAMQYRILSVAL-DGYMK-VFD 301 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~s~~~-dg~i~-iwd 301 (532)
|... ...++|++. |..++ +|-
T Consensus 309 Wd~~---------~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 309 WDSK---------DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccc---------cceeeeeeccccceeeeee
Confidence 6322 346777653 44433 554
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=1e-10 Score=112.72 Aligned_cols=271 Identities=16% Similarity=0.188 Sum_probs=177.5
Q ss_pred EEEEEeC----CeEEEEeC--CCceEEEEe-eccCceeEEEEEccCCCEEEEEcC----CCCEEEEECCCC--c--eEEE
Q 038802 66 LFAATHS----ASLTLFSS--QTLEKHSAI-SSFKDVVTCSSFRPDGSLLAASDL----SGLIQVFDVKSR--T--PLRR 130 (532)
Q Consensus 66 l~~~~~d----~~v~i~~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~--~--~~~~ 130 (532)
+++|+.. +.|++|++ .+++....- .........++++|++++|++... +|.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 68888877 444433221 123455677899999999998865 578999988654 2 3333
Q ss_pred ecCCCCCEEEEEeecCCCcEEEEEe-CCCeEEEEECCC-CeEEEe---cc----------CCCCceEEEEEeCCCCCEEE
Q 038802 131 LKSHTRPVRFVKYPFLDKLHLVSGG-DDGIVKFWDVAG-ESVVLD---LF----------GHKDYVRCGDCSPVNGDMFV 195 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~~l~ 195 (532)
..........++++| ++.+++++. .+|.|.++++.. +..... +. .......++.++| ++++++
T Consensus 82 ~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~ 159 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVY 159 (345)
T ss_dssp EEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEE
T ss_pred eccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEE
Confidence 332344567789999 777777776 589999999986 433221 11 1234567899999 888777
Q ss_pred EEeC-CCeEEEEEcccCCce----eEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccC-CCe--eeEEccC---
Q 038802 196 TGSY-DHTVKLWDVRVENSK----SVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIG-GGK--MVYSMES--- 262 (532)
Q Consensus 196 s~s~-dg~i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~-~~~--~~~~~~~--- 262 (532)
+... ...|.+|++...... ..........-..+.|+|+++++.+.. ++.|.+|++.. .+. .+.....
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 6543 447999999765421 233446677889999999999887776 78999999882 212 1222211
Q ss_pred ---CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC--Cc--eEEEeeec-CCCeeEEEEecCCCEEEEEe-
Q 038802 263 ---HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG--KM--KVTHSMRF-PAPLMSVAFSPDCMTRVIGT- 333 (532)
Q Consensus 263 ---~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~g~- 333 (532)
.......+.++|++ ..++++...++.|.+|++. ++ +.+..+.. ......++++|+|++|+++.
T Consensus 240 ~~~~~~~~~~i~ispdg--------~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDG--------RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp TSCSSSSEEEEEE-TTS--------SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred cccccCCceeEEEecCC--------CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 12257889999995 3344455567899999983 23 34444443 34589999999999999887
Q ss_pred cCCcEEEEeecCc
Q 038802 334 SNGTIFAGRRKKK 346 (532)
Q Consensus 334 ~dg~i~iw~~~~~ 346 (532)
.++.|.+|+++..
T Consensus 312 ~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 312 DSNTVSVFDIDPD 324 (345)
T ss_dssp TTTEEEEEEEETT
T ss_pred CCCeEEEEEEeCC
Confidence 5568999998644
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=9.2e-12 Score=119.70 Aligned_cols=245 Identities=16% Similarity=0.222 Sum_probs=157.0
Q ss_pred eEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc-CCCCEEEEECCCCceEEEecC
Q 038802 55 NSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD-LSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~ 133 (532)
..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||++++++. .++.+.++|.++.+.++.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 457899999999999999999999999999999987744 568899999999999775 588999999999998887753
Q ss_pred C-------CCCEEEEEeecCCCc-EEEEEeCCCeEEEEECCCCeEEE-eccCCCCceEEEEEeCCCCCEEEEE-eCCCeE
Q 038802 134 H-------TRPVRFVKYPFLDKL-HLVSGGDDGIVKFWDVAGESVVL-DLFGHKDYVRCGDCSPVNGDMFVTG-SYDHTV 203 (532)
Q Consensus 134 h-------~~~i~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i 203 (532)
. ...+..+..+| ... ++++.-+.+.|.+.|....+.+. .............|+| ++++++.+ ..+..|
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i 196 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKI 196 (369)
T ss_dssp -EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEE
T ss_pred ccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeeccccccee
Confidence 2 34677888888 555 44444555888888977654332 2222344566788999 88876654 445567
Q ss_pred EEEEcccCCceeEEE-----------------------------------------------------ec-CCCcEEEEE
Q 038802 204 KLWDVRVENSKSVME-----------------------------------------------------VN-HGKPIEDVM 229 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~-----------------------------------------------------~~-~~~~v~~i~ 229 (532)
-++|..+.+...... +. .+.+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 777765432211110 00 1112 4567
Q ss_pred EecCCCEEEEE---c--CCeEEEEEccCCCeeeEEccC-CCcceEEEEEeccCCCCCccccccEEEEEecC-CeEEEEEC
Q 038802 230 FLPSGGLIATA---G--GNSVKIWDLIGGGKMVYSMES-HNKTVTSVCVGRVGNESGEEAMQYRILSVALD-GYMKVFDY 302 (532)
Q Consensus 230 ~~~~~~~l~~~---~--d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~i~iwd~ 302 (532)
.+|+++++.+. + .+.|.++|..+. +.+.++.. ....+..+.|+++| ....+|.-.+ |.|.+||.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG--------~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDG--------KEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTS--------SEEEEEEE--TTEEEEEET
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCC--------CEEEEEEecCCCEEEEEEC
Confidence 78999999988 3 379999999887 66666642 22358999999996 3334444333 48999999
Q ss_pred CCceEEEeee
Q 038802 303 GKMKVTHSMR 312 (532)
Q Consensus 303 ~~~~~~~~~~ 312 (532)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999999886
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.55 E-value=5.2e-11 Score=111.68 Aligned_cols=261 Identities=13% Similarity=0.094 Sum_probs=174.5
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC----------CCCEEEEECCCCceEEEecCCCC------
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL----------SGLIQVFDVKSRTPLRRLKSHTR------ 136 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~------ 136 (532)
++|.+.|..+++.+.++.....+-. + ++|||+.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999988876444433 4 9999999887755 78899999999999988764222
Q ss_pred -CEEEEEeecCCCcEEEEEe-C-CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc
Q 038802 137 -PVRFVKYPFLDKLHLVSGG-D-DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213 (532)
Q Consensus 137 -~i~~~~~~~~~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (532)
....++++| +++++++.. . +..|.+.|+.+++.+..+.-.. ...-...+ +..++ +-+.||......+.....
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~--e~~~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA--NDTFF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec--CCccE-EEeecCceEEEEecCCCc
Confidence 234678899 888888665 3 7899999999999988776422 22112222 22222 333455555443332211
Q ss_pred eeEEE--ecCC--CcEE-EEEEec-CCCEEEEEcCCeEEEEEccCCC----eeeEEccC-------CCcceEEEEEeccC
Q 038802 214 KSVME--VNHG--KPIE-DVMFLP-SGGLIATAGGNSVKIWDLIGGG----KMVYSMES-------HNKTVTSVCVGRVG 276 (532)
Q Consensus 214 ~~~~~--~~~~--~~v~-~i~~~~-~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~-------~~~~i~~~~~~~~~ 276 (532)
..... .-+. .++. .-.|.+ +|+++..+..|.|.+.|+.... .....+.. ..+...-+++++++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 11111 1011 1110 004455 8888888888999999965431 22222211 12233448899885
Q ss_pred CCCCccccccEEEE-E---------ecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCC-EEEEEe-cCCcEEEEeec
Q 038802 277 NESGEEAMQYRILS-V---------ALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCM-TRVIGT-SNGTIFAGRRK 344 (532)
Q Consensus 277 ~~~~~~~~~~~l~s-~---------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~iw~~~ 344 (532)
.+++. . ...+.|.++|..+++.+..+.....+..++++|||+ .|++.. .++.|.++|..
T Consensus 260 ---------~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 260 ---------DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred ---------CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 44444 3 122589999999999999999888999999999999 887766 57889999998
Q ss_pred Ccccc
Q 038802 345 KKENV 349 (532)
Q Consensus 345 ~~~~~ 349 (532)
+.+..
T Consensus 331 t~k~i 335 (352)
T TIGR02658 331 TGKEL 335 (352)
T ss_pred CCeEE
Confidence 88665
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.8e-12 Score=113.12 Aligned_cols=148 Identities=20% Similarity=0.365 Sum_probs=110.2
Q ss_pred eEEEEcCCCCeEEEEEe----------CCeEEEEeCC-CceEEEEeec-cCceeEEEEEccCCCEEEEE--cCCCCEEEE
Q 038802 55 NSIVFSPTTSHLFAATH----------SASLTLFSSQ-TLEKHSAISS-FKDVVTCSSFRPDGSLLAAS--DLSGLIQVF 120 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~----------d~~v~i~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g--~~dg~i~iw 120 (532)
..+.|+|+|.+|++-.. -+...+|-++ .......+.. ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999998776544 1234444442 1233344433 34579999999999987654 457799999
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCC---CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEE
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD---GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTG 197 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 197 (532)
|++ ++.+..+. ...+..+.|+| +++++++|+.+ |.|.+||+++.+.+.... |. .++.++|+| +|++|+++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCEEEEE
Confidence 997 56666654 56788999999 89999988743 679999999888887765 33 478999999 99999998
Q ss_pred eC------CCeEEEEEcc
Q 038802 198 SY------DHTVKLWDVR 209 (532)
Q Consensus 198 s~------dg~i~iwd~~ 209 (532)
+. |..++||+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeccceeccccEEEEEec
Confidence 75 6778999985
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=5.3e-12 Score=125.91 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=146.7
Q ss_pred CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC---CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCC
Q 038802 115 GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD---DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 191 (532)
..|.++|... ...+.+..|...+.+..|+| +++.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+| ++
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG 257 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DG 257 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CC
Confidence 3788888754 44556667888999999999 8888877653 468999999887653 3444566777899999 88
Q ss_pred CEEE-EEeCCCe--EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC--C--eEEEEEccCCCeeeEEccCCC
Q 038802 192 DMFV-TGSYDHT--VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG--N--SVKIWDLIGGGKMVYSMESHN 264 (532)
Q Consensus 192 ~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~~ 264 (532)
+.++ +.+.++. |.+||+.++.... ...+........|+|+|+.++..++ | .|.+||+.++ . ...+..+.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~--Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR--LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-N-PRRISFGG 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE--ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-C-eEEeecCC
Confidence 7665 5555655 7777887654322 2234455677899999998877662 3 6888887654 2 23333344
Q ss_pred cceEEEEEeccCCCCCccccccEEEEEecC---CeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC------
Q 038802 265 KTVTSVCVGRVGNESGEEAMQYRILSVALD---GYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN------ 335 (532)
Q Consensus 265 ~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------ 335 (532)
..+....|+|+| ..++..+.+ ..|.+||+.++.. ..+.....+....|+|||+.|+..+.+
T Consensus 334 ~~~~~~~~SpdG---------~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 334 GRYSTPVWSPRG---------DLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred CcccCeEECCCC---------CEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 556778899994 556555433 3688889865543 333333457788999999998765543
Q ss_pred CcEEEEeecCcc
Q 038802 336 GTIFAGRRKKKE 347 (532)
Q Consensus 336 g~i~iw~~~~~~ 347 (532)
..++++++..+.
T Consensus 404 ~~L~~~dl~g~~ 415 (435)
T PRK05137 404 PKLYTVDLTGRN 415 (435)
T ss_pred ceEEEEECCCCc
Confidence 257777775543
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.6e-12 Score=131.07 Aligned_cols=197 Identities=22% Similarity=0.256 Sum_probs=157.4
Q ss_pred cCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCc----eeEEEEEccCCCEEEEEcCCCCEEEEECCCCce
Q 038802 52 SSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKD----VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
+.|....+.-+...++.++.++.+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3444455555677899999999999999988776665544321 222334567778999999999999999874443
Q ss_pred EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE-eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 038802 128 LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL-DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 206 (532)
-..+.+|.+.|.++.|+. ++.+++++|+|.++++|++++.+... ...+|+..|..+++.| + .+++++.|.+.++|
T Consensus 168 p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW 243 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVW 243 (967)
T ss_pred cceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEE
Confidence 346889999999999998 99999999999999999999988776 6688999999999998 4 99999999999999
Q ss_pred EcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC
Q 038802 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 207 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
+.... ....+.......+..++..++..+.++++ |+.+++||+...
T Consensus 244 ~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 244 GVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 76542 22244434567899999999999999998 899999998653
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=131.34 Aligned_cols=273 Identities=14% Similarity=0.128 Sum_probs=190.7
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccC-ceeEEEEEcc------CCCEEEEEcCCCCEEEEEC
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK-DVVTCSSFRP------DGSLLAASDLSGLIQVFDV 122 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~------~~~~l~~g~~dg~i~iwd~ 122 (532)
|-+++++..+-. ++|++|. ...+.+||..++..+..+.... -.+. .+ .+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecch
Confidence 445566666654 4676654 5789999998876655443211 1111 11 2334555544444433322
Q ss_pred CCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCc----eEEEEEeCCCCCEEEEEe
Q 038802 123 KSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY----VRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 123 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----v~~i~~~~~~~~~l~s~s 198 (532)
.. +....+.. .|....+.. ....++.++.+..+.+||...+.....+...... ..-+-.++ +.-++++|+
T Consensus 79 ~~-~~~~~~s~---wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gs 152 (967)
T KOG0974|consen 79 SN-QIIERFSD---WIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGS 152 (967)
T ss_pred hh-hhhhhccc---cccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEecc
Confidence 21 11222222 222233443 6777888899999999999887766655432211 11122344 667899999
Q ss_pred CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCC
Q 038802 199 YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
.-+.|.+|+.. .........+|.+.|.++.++-+|+++++.+ |.++++|++.+........-+|...++.+++.|+
T Consensus 153 v~~~iivW~~~-~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPH-EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred ccccEEEEecc-ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 99999999998 4445555669999999999999999999999 7899999999885555567789999999999975
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceEEEeee-c-CCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-F-PAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.+++++.|.+.++|+.+.-+. ..+. | ...|+.++..++....++++.||.+++|++.....
T Consensus 230 ---------~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 230 ---------RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ---------eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 799999999999997554433 3554 3 35899999999999999999999999999987643
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=5.1e-12 Score=112.10 Aligned_cols=221 Identities=14% Similarity=0.273 Sum_probs=166.2
Q ss_pred CCCCCCCCCcccccccCCCcc-----CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeC----CCceEEEEeeccCceeE
Q 038802 27 PRNLSQTPESKYWSSFKPHQI-----PGLVSSINSIVFSPTTSHLFAATHSASLTLFSS----QTLEKHSAISSFKDVVT 97 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~~~~-----~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~----~~~~~~~~~~~~~~~v~ 97 (532)
....+.+..+++|.....-+. ..-..+++++.++++...|++|-..|++.-+.+ +.....+....|...|.
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~ 118 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVS 118 (404)
T ss_pred eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhccee
Confidence 345578888899987665443 223568899999999999999999999998865 34455666778999999
Q ss_pred EEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEEC--CCCeEEEecc
Q 038802 98 CSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV--AGESVVLDLF 175 (532)
Q Consensus 98 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~ 175 (532)
.+-|+-...++++.+.|..+.---.+++..+..+.. ....+++.|.- .+.+.|...|.|..-.+ ..-..+.++.
T Consensus 119 ~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~ 194 (404)
T KOG1409|consen 119 AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFN 194 (404)
T ss_pred eEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEc
Confidence 999999999999999998775444455544332221 11112222321 15556666666665544 4456788899
Q ss_pred CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccC
Q 038802 176 GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIG 252 (532)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~ 252 (532)
+|.+.+.+++|.| ....+++|..|..+.+||+-..+.......+|...|..+...+--+.+.+++ ||.|.+|++..
T Consensus 195 ~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 195 GHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999 8899999999999999999877777777778999999998888777888887 99999999864
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=2.2e-11 Score=115.88 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=153.6
Q ss_pred cCCCEEEEEcCCCCEEEEECCCCceEEEecC---CCCCEEEEEee------c-------------CCCcEEEEEeCCCeE
Q 038802 103 PDGSLLAASDLSGLIQVFDVKSRTPLRRLKS---HTRPVRFVKYP------F-------------LDKLHLVSGGDDGIV 160 (532)
Q Consensus 103 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~~------~-------------~~~~~l~s~s~dg~i 160 (532)
|...++|....||.+++|+...++....+.. -.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776653 23445555552 1 255678889999999
Q ss_pred EEEECCCCeEEEecc--CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEE
Q 038802 161 KFWDVAGESVVLDLF--GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIA 238 (532)
Q Consensus 161 ~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 238 (532)
.+|++..++....+. .|.+.|.++.++. +-.+|.+++.|+.+..|+.......+... .....+.+++++|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEE
Confidence 999999999887774 6999999999987 88899999999999999998866666655 5677889999999999998
Q ss_pred EEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 239 TAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 239 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
+++ +.|++||+.+. +.+..+.+|.++|.++.|...-.. .....+|.+...+..+.+|-+..
T Consensus 161 ~as-~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g---~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS-RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDG---IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc-ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccc---cccceeeeccccccceeEEEEEc
Confidence 876 78999999988 899999999999999999876100 00133445555666788886543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.6e-11 Score=122.70 Aligned_cols=222 Identities=18% Similarity=0.174 Sum_probs=147.0
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEE-EcCCC--CE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAA-SDLSG--LI 117 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg--~i 117 (532)
...+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34456777889999999999999877644 379999998876543 3333445567899999998874 44454 58
Q ss_pred EEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEE
Q 038802 118 QVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 194 (532)
++||+.++... .+..+........|+| ++..++..+. +| .|+++|+.+++...... .........|+| +++.+
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Sp-dg~~i 345 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSA-DGKTL 345 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECC-CCCEE
Confidence 88899877643 4555555667788999 7776665553 33 58888887776433222 122334578999 88888
Q ss_pred EEEeCC-C--eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CC--eEEEEEccCCCeeeEEccCCCcce
Q 038802 195 VTGSYD-H--TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GN--SVKIWDLIGGGKMVYSMESHNKTV 267 (532)
Q Consensus 195 ~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i 267 (532)
+..+.+ + .|.+||+.++....... ........|+|+|+.++.++ ++ .+.++++.. .....+..+.+.+
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g--~~~~~l~~~~g~~ 420 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVRILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING--RVRLPLPTAQGEV 420 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEEEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCCCCCc
Confidence 776643 3 58888988754332221 22233568999999887766 33 466777643 3334454555666
Q ss_pred EEEEEecc
Q 038802 268 TSVCVGRV 275 (532)
Q Consensus 268 ~~~~~~~~ 275 (532)
...+|+|.
T Consensus 421 ~~p~ws~~ 428 (430)
T PRK00178 421 REPSWSPY 428 (430)
T ss_pred CCCccCCC
Confidence 77777763
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=1.4e-11 Score=123.08 Aligned_cols=219 Identities=21% Similarity=0.237 Sum_probs=146.9
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEE-EcCCC--CE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAA-SDLSG--LI 117 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg--~i 117 (532)
...+..+...+.+.+|+|||++++.++.+ ..|++||+.+++... +..+...+.+++|+|||+.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 34566677789999999999999987754 489999998875543 3345566778999999987764 44444 58
Q ss_pred EEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCC-C--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEE
Q 038802 118 QVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD-G--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 194 (532)
++||+.++.. ..+..+........|+| ++..|+.++.. + .|.++|+.+++.. .+..+...+....|+| +++++
T Consensus 261 ~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~sp-dg~~i 336 (417)
T TIGR02800 261 YVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSP-DGDLI 336 (417)
T ss_pred EEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECC-CCCEE
Confidence 8899887654 34444555556778999 78777665543 3 6888888876643 3333555667889999 88888
Q ss_pred EEEeCCC---eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C-C--eEEEEEccCCCeeeEEccCCCcce
Q 038802 195 VTGSYDH---TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G-N--SVKIWDLIGGGKMVYSMESHNKTV 267 (532)
Q Consensus 195 ~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~i 267 (532)
+.++.++ .|.+||+.++...... .........|+|+|+.|+.++ + + .+.+.+... .....+..+.+.+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g--~~~~~~~~~~g~~ 411 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERVLT---DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG--RFRARLPLGNGDV 411 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEEcc---CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC--ceeeECCCCCCCc
Confidence 8888776 7889998774332221 122345568999999887776 3 2 455555432 3344444444444
Q ss_pred EEEEE
Q 038802 268 TSVCV 272 (532)
Q Consensus 268 ~~~~~ 272 (532)
..+.|
T Consensus 412 ~~~~w 416 (417)
T TIGR02800 412 REPAW 416 (417)
T ss_pred CCCCC
Confidence 44433
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4e-12 Score=119.97 Aligned_cols=235 Identities=16% Similarity=0.203 Sum_probs=170.2
Q ss_pred eeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC
Q 038802 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 54 V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 133 (532)
|.-.-++-|-..++.-..|..|-+.... |. ...+.. ...-..++++.-..-|++++....|+-++++.|..+..+..
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak~-G~-hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAKY-GR-HYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhhc-Ce-eeeeec-CcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 3334444444444444555666554422 11 111111 12234455555444455555567799999999999999998
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc------CCCC-----ceEEEEEeCCCCCEEEEEeCCCe
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF------GHKD-----YVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~-----~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
..++++++..++ ...+|++|+.+|.|-.||.++...+.++. .|.+ .|+++.|+. +|-.+++|+.+|.
T Consensus 174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGS 251 (703)
T ss_pred ccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCc
Confidence 889999999998 77889999999999999998876555442 2333 499999997 7999999999999
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEEEEecC--CCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCC
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPS--GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 280 (532)
+.|||+++.++..+.......+|..+.|.+. +..+++.....++|||-.++ +....++.. ..+..+|+.|+
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G-k~~asiEpt-~~lND~C~~p~----- 324 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG-KPMASIEPT-SDLNDFCFVPG----- 324 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccC-Cceeecccc-CCcCceeeecC-----
Confidence 9999999977666665566778999999875 45777777789999998777 677776653 44999999998
Q ss_pred ccccccEEEEEecCCeEEEEECCC
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
..+++++-.++.+..|=+..
T Consensus 325 ----sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 ----SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ----CceEEEecCCCcceeEEccc
Confidence 56888898888877765544
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=9.2e-11 Score=109.56 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=192.5
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCC---------------eEEEEeCCCceEEEEeeccCce--eE-EEEEccCCCEEEEE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSA---------------SLTLFSSQTLEKHSAISSFKDV--VT-CSSFRPDGSLLAAS 111 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~---------------~v~i~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~g 111 (532)
-...|..+.|+|.++||.+-+..+ .+.+||..++..+..+..-..+ .+ -+.|+-+.+++|--
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 345789999999999999876443 4999999999999988776555 44 67899988888754
Q ss_pred cCCCCEEEEECCCCceE-EEecC-CCCCEEEEEeecC-CCcEEEE-----EeCCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 112 DLSGLIQVFDVKSRTPL-RRLKS-HTRPVRFVKYPFL-DKLHLVS-----GGDDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 112 ~~dg~i~iwd~~~~~~~-~~~~~-h~~~i~~~~~~~~-~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
. ...++|+++ ++... ..+.. ....|....|+|. ++..|+. .+.++++++|.+..+..+.+..-....-..
T Consensus 150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3 346999997 33211 11111 1356788888884 3333443 467889999999877665544322223336
Q ss_pred EEEeCCCCCEEEEEe-----------CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc---CCeEEEEE
Q 038802 184 GDCSPVNGDMFVTGS-----------YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG---GNSVKIWD 249 (532)
Q Consensus 184 i~~~~~~~~~l~s~s-----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---d~~i~iwd 249 (532)
+.|.+ .+++++.-. ....+++++++.. ...+.. ...++|...+|.|.++.+++.+ .-.+.++|
T Consensus 228 LkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 228 LKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc-ccceec-cccccceeeeecccCCceeEEecccccceeecc
Confidence 77887 666655321 1245788888742 233322 5688999999999888666655 56899999
Q ss_pred ccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecC---CeEEEEECCCceEEE-eeecCCCeeEEEEecC
Q 038802 250 LIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD---GYMKVFDYGKMKVTH-SMRFPAPLMSVAFSPD 325 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~ 325 (532)
++.. ....+ ....=..+.|+|. ..+++.++.| |.+-+||....-.+. .+. .....-+.|+||
T Consensus 305 lr~N--l~~~~--Pe~~rNT~~fsp~---------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd 370 (561)
T COG5354 305 LRGN--LRFYF--PEQKRNTIFFSPH---------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPD 370 (561)
T ss_pred cccc--eEEec--CCcccccccccCc---------ccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCC
Confidence 9865 33333 3444567889998 6788887776 779999987654443 443 234456789999
Q ss_pred CCEEEEEec------CCcEEEEeecCccc
Q 038802 326 CMTRVIGTS------NGTIFAGRRKKKEN 348 (532)
Q Consensus 326 ~~~l~~g~~------dg~i~iw~~~~~~~ 348 (532)
|+++.+... |..+.+|++....-
T Consensus 371 ~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 371 GQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred ceEEEecCCCcccccCcceEEEEecCchh
Confidence 999887753 77899999987653
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=5.1e-11 Score=118.98 Aligned_cols=211 Identities=19% Similarity=0.210 Sum_probs=139.5
Q ss_pred eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
.|.++|.... ..+.+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+| +++.
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSK 247 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCE
Confidence 6888887543 345555667778999999999999977543 479999998876443 334556677889999 7765
Q ss_pred EE-EEeCCC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CC--eEEEEEcccCCceeEEEecCCCc
Q 038802 151 LV-SGGDDG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DH--TVKLWDVRVENSKSVMEVNHGKP 224 (532)
Q Consensus 151 l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 224 (532)
|+ +.+.++ .|++||+.++... .+..+........|+| +++.|+.++. ++ .|.++|+.+++... +. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-FRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCC
Confidence 55 455444 5889999877543 3444555555778999 8887776554 33 57777877644322 22 34556
Q ss_pred EEEEEEecCCCEEEEEc-CC---eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC---eE
Q 038802 225 IEDVMFLPSGGLIATAG-GN---SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG---YM 297 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i 297 (532)
+....|+|+|++++.++ ++ .|.+||+.++. . ..+... .......|+|++ ..|+..+.++ .+
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~-~~~~~p~~spdg---------~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-E-RVLTDT-GLDESPSFAPNG---------RMILYATTRGGRGVL 391 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-e-EEccCC-CCCCCceECCCC---------CEEEEEEeCCCcEEE
Confidence 77889999999888877 43 78899987652 2 222222 223456899984 5555555543 35
Q ss_pred EEEECC
Q 038802 298 KVFDYG 303 (532)
Q Consensus 298 ~iwd~~ 303 (532)
.+.+..
T Consensus 392 ~~~~~~ 397 (417)
T TIGR02800 392 GLVSTD 397 (417)
T ss_pred EEEECC
Confidence 555543
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=1e-10 Score=109.28 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=190.4
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---------------
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS--------------- 114 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------------- 114 (532)
..-++..++|||.|.+|++... ..|.+|....+..+..+. ...|..+.|+|.++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 5568999999999999998776 458999987766554443 3578999999999999986543
Q ss_pred CCEEEEECCCCceEEEecCCCCC--EE-EEEeecCCCcEEEEEeCCCeEEEEECCCCeE-EEeccC-CCCceEEEEEeCC
Q 038802 115 GLIQVFDVKSRTPLRRLKSHTRP--VR-FVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDLFG-HKDYVRCGDCSPV 189 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h~~~--i~-~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~i~~~~~ 189 (532)
+.+.+||..++..+..+.....+ .+ -+.|+. +..+++-. ....++++++ ++.. ...+.. ....|....|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 34999999999999998876665 45 677887 66655544 3456899997 3322 111111 1356788889884
Q ss_pred -CCCEEEE-----EeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc------------CCeEEEEEcc
Q 038802 190 -NGDMFVT-----GSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG------------GNSVKIWDLI 251 (532)
Q Consensus 190 -~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------------d~~i~iwd~~ 251 (532)
++..|+. ++.++.+++|.+..........+-.- .-..+.|.+.|+++++-- ...++++++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 3344443 45678899999876544444433222 224578889888766431 2468888887
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEE
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 331 (532)
.....+. ..-.++|...+|.|.+. ..-+++|-.+-.+.++|++.. + ..+-.+..=+.+.|+|.+++++.
T Consensus 264 e~~i~V~--~~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l-~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 264 ERSIPVE--KDLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-L-RFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred cccccee--ccccccceeeeecccCC-------ceeEEecccccceeecccccc-e-EEecCCcccccccccCcccEEEE
Confidence 5422222 25578999999999853 334555567889999998876 3 22333445566778888887777
Q ss_pred EecC---CcEEEEeecCccc
Q 038802 332 GTSN---GTIFAGRRKKKEN 348 (532)
Q Consensus 332 g~~d---g~i~iw~~~~~~~ 348 (532)
++-| |.+-+|+...+-.
T Consensus 333 agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ecCCccccceEEeccCCceE
Confidence 6544 5677777766543
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-11 Score=109.96 Aligned_cols=246 Identities=13% Similarity=0.243 Sum_probs=168.0
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc-----eEEEecCCC------------CCEEEEEeecC-CCcEEEEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-----PLRRLKSHT------------RPVRFVKYPFL-DKLHLVSG 154 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~i~~~~~~~~-~~~~l~s~ 154 (532)
.+-|.++.|..+|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.+. +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999754322 233444453 35778888762 34577888
Q ss_pred eCCCeEEEEECCCCeE-----------------------------------EEec-cCCCCceEEEEEeCCCCCEEEEEe
Q 038802 155 GDDGIVKFWDVAGESV-----------------------------------VLDL-FGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 155 s~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
+.|.+|++|.+..... .+.+ .+|.-.|+++.++. +...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 8999999998753210 1111 35888899999997 78877775
Q ss_pred CCCeEEEEEcccCCcee-EEEe-c-----CCCcEEEEEEecCC-C-EEEEEcCCeEEEEEccCCCee-----eE------
Q 038802 199 YDHTVKLWDVRVENSKS-VMEV-N-----HGKPIEDVMFLPSG-G-LIATAGGNSVKIWDLIGGGKM-----VY------ 258 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~-~~~~-~-----~~~~v~~i~~~~~~-~-~l~~~~d~~i~iwd~~~~~~~-----~~------ 258 (532)
.|=.|.+|++.-..... +..+ + ...-|++..|+|.. + ++.+++.|+|++.|++...-+ +.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56789999987532221 1111 1 12457888999943 3 444444899999999843111 11
Q ss_pred ----EccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC-CceEEEeee-cC------------CCe---
Q 038802 259 ----SMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG-KMKVTHSMR-FP------------APL--- 317 (532)
Q Consensus 259 ----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~------------~~v--- 317 (532)
-+..--..|..+.|+++ |+++++-+. -+|++||+. ..+++.++. |. ..|
T Consensus 263 ~~rsffseiIsSISDvKFs~s---------GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHS---------GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred cchhhHHHHhhhhhceEEccC---------CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 01112346888999998 577776543 589999994 455565554 21 122
Q ss_pred eEEEEecCCCEEEEEecCCcEEEEeecCccccc
Q 038802 318 MSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVE 350 (532)
Q Consensus 318 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 350 (532)
..++|+.++.++++|+....+++++...+.+..
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 357899999999999999999999976665543
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4e-11 Score=119.36 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=142.5
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEE-EcCCCC--EE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAA-SDLSGL--IQ 118 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~--i~ 118 (532)
..+..+...+.+..|+|||+.++..+.+ ..|++||+.+++... +....+......|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3455667788999999999998877653 368899998776533 3222334457899999998875 455664 77
Q ss_pred EEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEE
Q 038802 119 VFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFV 195 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 195 (532)
++|+.+++. ..+..+........|+| ++..++..+. ++ .|.++|+.+++..... .........+|+| +++.++
T Consensus 290 ~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~Sp-DG~~l~ 365 (448)
T PRK04792 290 VVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITP-DGRSMI 365 (448)
T ss_pred EEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECC-CCCEEE
Confidence 888887654 44555555667889999 7776665543 33 5777788777644322 1222234568999 888877
Q ss_pred EEeC-CC--eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CC--eEEEEEccCCCeeeEEccCCCcceE
Q 038802 196 TGSY-DH--TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GN--SVKIWDLIGGGKMVYSMESHNKTVT 268 (532)
Q Consensus 196 s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~ 268 (532)
..+. ++ .|.++|+.++..... . .. .......|+|+|+.++... ++ .+.+++.. + .....+..+.+.+.
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~l-t-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~ 440 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVL-T-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVK 440 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEc-c-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcC
Confidence 6655 34 455677776543222 2 11 1223457999999877665 33 47777763 3 44555655666677
Q ss_pred EEEEec
Q 038802 269 SVCVGR 274 (532)
Q Consensus 269 ~~~~~~ 274 (532)
..+|+|
T Consensus 441 ~p~Wsp 446 (448)
T PRK04792 441 SPAWSP 446 (448)
T ss_pred CCccCC
Confidence 778876
No 259
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.2e-11 Score=118.96 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=207.1
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC------------CEEEEEcCCCCEEEE
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG------------SLLAASDLSGLIQVF 120 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~g~~dg~i~iw 120 (532)
.-.+++|+|.| .+|.|+ ...|.+.|..+.+.++.+..|...|+.+.|.|-. -.||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36789999988 456555 5789999999999999999999999999998731 257788889999999
Q ss_pred ECCCCceEEEecCCCCCEEEEEeecC--CC-cEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEE
Q 038802 121 DVKSRTPLRRLKSHTRPVRFVKYPFL--DK-LHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTG 197 (532)
Q Consensus 121 d~~~~~~~~~~~~h~~~i~~~~~~~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 197 (532)
|...+..+..+..|..++..++|-+. +. ..|+.-....++.+|+..+|+....+........|+.+.|.+...+..-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 99999888899999999999999652 22 5677777789999999999999998887777888999999888888888
Q ss_pred eCCCeEEEEEcccCC------ceeEEEecCCC------------c-------------EEEEEEecCCC-EEEEEcCCeE
Q 038802 198 SYDHTVKLWDVRVEN------SKSVMEVNHGK------------P-------------IEDVMFLPSGG-LIATAGGNSV 245 (532)
Q Consensus 198 s~dg~i~iwd~~~~~------~~~~~~~~~~~------------~-------------v~~i~~~~~~~-~l~~~~d~~i 245 (532)
+..|.+.+-+.-... ....+...|.. . ...++|+|.-+ .+...--..+
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 888888777653211 11111112211 0 11345677544 4444447889
Q ss_pred EEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC----------------ceEEE
Q 038802 246 KIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK----------------MKVTH 309 (532)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------------~~~~~ 309 (532)
.++|+.-. .++....-..+.+.-+.+-|++. ...|++...||.+.+|--+. ++.++
T Consensus 255 lv~dle~~-~~l~vvpier~~akfv~vlP~~~-------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 255 LVFDLEYE-CCLAVVPIERGGAKFVDVLPDPR-------RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVH 326 (1062)
T ss_pred EEEcchhh-ceeEEEEeccCCcceeEeccCCC-------cceEEEEecCCeEEEEEeeccCccccccchhhccccccceE
Confidence 99999765 66766666677777788888865 67899999999999996544 22222
Q ss_pred eee--cCCCeeEEEEecC-CCEEEEEecCCcEEEEeecCccc
Q 038802 310 SMR--FPAPLMSVAFSPD-CMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 310 ~~~--~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.+. ....+......|. ...++.--++|.+.+|.+.++..
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 221 1112233333454 44555556788999999986543
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=3.6e-09 Score=102.00 Aligned_cols=261 Identities=15% Similarity=0.191 Sum_probs=167.5
Q ss_pred ccCeeEEEEcCCCCeEEEEEe----CCeEEEEeCCCc----eEEEEeeccCceeEEEEEccCCCEEEEEc-CCCCEEEEE
Q 038802 51 VSSINSIVFSPTTSHLFAATH----SASLTLFSSQTL----EKHSAISSFKDVVTCSSFRPDGSLLAASD-LSGLIQVFD 121 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~----d~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd 121 (532)
......++++|++++|.++.. ++.|..|.+... +.+............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345567899999999999877 468888877653 33334443345667799999999999886 489999999
Q ss_pred CCC-CceEEE---ec----------CCCCCEEEEEeecCCCcEEEEEe-CCCeEEEEECCCCe--E--EEec-cCCCCce
Q 038802 122 VKS-RTPLRR---LK----------SHTRPVRFVKYPFLDKLHLVSGG-DDGIVKFWDVAGES--V--VLDL-FGHKDYV 181 (532)
Q Consensus 122 ~~~-~~~~~~---~~----------~h~~~i~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~--~--~~~~-~~~~~~v 181 (532)
+.. +..... +. .......++.|+| +++++++.. ....|.+|++.... . ...+ ......-
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 976 333222 11 1235578999999 877777654 34579999987654 2 1222 2344557
Q ss_pred EEEEEeCCCCCEEEEE-eCCCeEEEEEcccCC--ceeEEEec-------CCCcEEEEEEecCCCEEEEEc--CCeEEEEE
Q 038802 182 RCGDCSPVNGDMFVTG-SYDHTVKLWDVRVEN--SKSVMEVN-------HGKPIEDVMFLPSGGLIATAG--GNSVKIWD 249 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~--~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd 249 (532)
+.+.|+| +++++++. -.+++|.++++.... ........ .......+.++|+|++|.++. .+.|.+|+
T Consensus 195 Rh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 7899999 77766554 457889999998322 22221111 122578899999999988876 67999999
Q ss_pred ccCC-C--eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEEC--CCceEEEeee--cCCCeeEEE
Q 038802 250 LIGG-G--KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDY--GKMKVTHSMR--FPAPLMSVA 321 (532)
Q Consensus 250 ~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~--~~~~v~~~~ 321 (532)
+... + ..+..+.........+.++|+ +.+|+++. .++.|.+|++ .++.+...-. .-....|+.
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~---------g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPD---------GRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TT---------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCC---------CCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 9422 2 233334333445789999999 45566555 6778999976 5676654432 223455665
Q ss_pred E
Q 038802 322 F 322 (532)
Q Consensus 322 ~ 322 (532)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 4
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=135.40 Aligned_cols=195 Identities=17% Similarity=0.290 Sum_probs=159.0
Q ss_pred cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeec-cCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC
Q 038802 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISS-FKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 47 ~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
+..+-..|.++.=+|...+.++|+.||.|++|....+..+..+.. .+..|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 456677899999999999999999999999999988877766643 34789999999999999999999999999987 6
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEe---CCCeEEEEECCCC---eEEEeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGG---DDGIVKFWDVAGE---SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
++....+.|....++..|-. ..+++++ +++.+.+||..-. ..++ ..|.+.++++++.| ....|++|+.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCC
Confidence 77788889999999999953 5566654 5789999996422 2333 78999999999999 9999999999
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEc
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSM 260 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 260 (532)
+|.|++||++..+....+.. +. ...++++++ .|.++||++... ..+.++
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~ 2406 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTF 2406 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEcccc-chhhcC
Confidence 99999999998655544432 33 556888888 899999999876 444444
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.40 E-value=3.7e-10 Score=110.93 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=169.2
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEE
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVK 142 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 142 (532)
+..+++++.+|.|.-+|..+|+.+.............. .++..+++++.+|.+..+|..+|+.+....... .+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 55788888999999999999998876654433222222 256788888889999999999999887765332 222111
Q ss_pred eecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE-----EEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE
Q 038802 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR-----CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217 (532)
Q Consensus 143 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (532)
.. .+..++.++.+|.+..||.++++.+..+......+. +... .+..++.++.+|.+..+|.++++..-..
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 11 244677788899999999999988776654332211 1112 1346778888899999999886544322
Q ss_pred EecCCC---c------E-EEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccE
Q 038802 218 EVNHGK---P------I-EDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 218 ~~~~~~---~------v-~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
...... . + .+..+ .++.+++++.+|.+..||..++ +.+..... . ....... . +..
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~-~-~~~~p~~--~---------~~~ 281 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSG-RVLWKRDA-S-SYQGPAV--D---------DNR 281 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCC-cEEEeecc-C-CccCceE--e---------CCE
Confidence 221110 0 0 01111 1344444444899999999877 54444431 1 1112222 1 457
Q ss_pred EEEEecCCeEEEEECCCceEEEeee-cCCC-eeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSMR-FPAP-LMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
++.++.||.+..+|..+++.+.... .... ..+... .+..+++++.+|.|++++..+++..
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 8888899999999999998876653 2222 222222 3678999999999999998887655
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.3e-10 Score=115.71 Aligned_cols=232 Identities=16% Similarity=0.185 Sum_probs=144.6
Q ss_pred eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC-CC--CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL-SG--LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
.+.++|..... .+.+..+...+.+..|+|||+.|+..+. ++ .|++||+.+++... +....+......|+| +++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCE
Confidence 67777865543 3455566778899999999999987643 33 58899998776432 222233345688999 7776
Q ss_pred EE-EEeCCCe--EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CC--eEEEEEcccCCceeEEEecCCCc
Q 038802 151 LV-SGGDDGI--VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DH--TVKLWDVRVENSKSVMEVNHGKP 224 (532)
Q Consensus 151 l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 224 (532)
|+ +.+.+|. |+++|+.+++.. .+..+.......+|+| +++.++..+. ++ .|.++|+.+++..... . ....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~-~g~~ 351 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-F-EGEQ 351 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEe-c-CCCC
Confidence 65 4566664 888898877654 3444555667789999 8887766553 34 4666677665433322 1 2223
Q ss_pred EEEEEEecCCCEEEEEc--CC--eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe--EE
Q 038802 225 IEDVMFLPSGGLIATAG--GN--SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY--MK 298 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--i~ 298 (532)
....+|+|+|++++..+ ++ .|.++|+.++ .. ..+... .......|+|++ ...+++...+|. +.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~-~~d~~ps~spdG--------~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTST-RLDESPSVAPNG--------TMVIYSTTYQGKQVLA 420 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCC-CCCCCceECCCC--------CEEEEEEecCCceEEE
Confidence 34578999999887765 34 4666777665 22 222222 122345799985 334444444443 77
Q ss_pred EEECCCceEEEeee-cCCCeeEEEEec
Q 038802 299 VFDYGKMKVTHSMR-FPAPLMSVAFSP 324 (532)
Q Consensus 299 iwd~~~~~~~~~~~-~~~~v~~~~~s~ 324 (532)
+++.. +.....+. ..+.+...+|+|
T Consensus 421 ~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEECC-CCceEECcCCCCCcCCCccCC
Confidence 77764 44444444 345677778887
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=7.2e-10 Score=118.23 Aligned_cols=285 Identities=13% Similarity=0.179 Sum_probs=192.1
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEE----eCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECC-
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLF----SSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK- 123 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~- 123 (532)
...+.|.++.|-++...++.+..+|.|.++ +..+. .......-...|.+++||||+..|+..+.+|++.+..-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 455789999999999999999999999999 54432 233334456799999999999999999989988876421
Q ss_pred --------------C--------CceEEEecC------------------------CCCCEEEEEeecCCCcEEEEEeC-
Q 038802 124 --------------S--------RTPLRRLKS------------------------HTRPVRFVKYPFLDKLHLVSGGD- 156 (532)
Q Consensus 124 --------------~--------~~~~~~~~~------------------------h~~~i~~~~~~~~~~~~l~s~s~- 156 (532)
. |+....|.| +...-..++|.. |+.++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEE
Confidence 0 011111111 222445788988 9999998774
Q ss_pred --C---CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC---CCeEEEEEcccCCceeEEEe---cCCCcE
Q 038802 157 --D---GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY---DHTVKLWDVRVENSKSVMEV---NHGKPI 225 (532)
Q Consensus 157 --d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~---~~~~~v 225 (532)
. ..++||+-+ |....+-..-.+--.+++|-| .|+++|+... ...|.+|.- +|-....+.. .....|
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence 2 579999965 665444443344445789999 9999998765 345667763 3333333333 346689
Q ss_pred EEEEEecCCCEEEEEcCCeEEEEEccCCC-eeeEEccC-CCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 226 EDVMFLPSGGLIATAGGNSVKIWDLIGGG-KMVYSMES-HNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 226 ~~i~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
..+.|++++.+|+..-.+.|.+|...+.. -....+.. ....+..+.|+|.. ...|...+.+|.+..+++.
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~--------p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK--------PLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred eEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC--------CCEEEEEecCCcEEEEEEE
Confidence 99999999999999876679999976642 11222221 22334558898874 4556666655555444321
Q ss_pred ----C----------------ceE----------------EEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 304 ----K----------------MKV----------------THSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 304 ----~----------------~~~----------------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
. |.. ...+..+.+|.+++|++++..+++-..||.|.+|....+
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1 000 122335678999999999988999999999999995443
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.6e-10 Score=112.99 Aligned_cols=231 Identities=13% Similarity=0.095 Sum_probs=147.0
Q ss_pred eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
.|.++|.+.+. ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| +++.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCE
Confidence 47778876544 45555667789999999999999876533 368999998876533 333344556789999 7776
Q ss_pred EE-EEeCCC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CC--eEEEEEcccCCceeEEEecCCCc
Q 038802 151 LV-SGGDDG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DH--TVKLWDVRVENSKSVMEVNHGKP 224 (532)
Q Consensus 151 l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 224 (532)
|+ +.+.+| .|.+||+.+++.. .+..+........|+| +++.++..+. +| .|.++|+.+++...... . ...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~-~~~ 332 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V-GNY 332 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCC
Confidence 65 555555 6888899887654 3444555566788999 8887766554 33 57777876654333221 1 233
Q ss_pred EEEEEEecCCCEEEEEc--CC--eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEe-cCC--eE
Q 038802 225 IEDVMFLPSGGLIATAG--GN--SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA-LDG--YM 297 (532)
Q Consensus 225 v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg--~i 297 (532)
.....|+|+|+.++..+ ++ .|.+||+.++.. ..+.. ........|+|+| ..++..+ .+| .+
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg---------~~i~~~~~~~g~~~l 400 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNG---------TMLIYATRQQGRGVL 400 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCC---------CEEEEEEecCCceEE
Confidence 34578999999888776 33 588899877632 22221 1222356899985 4454444 333 46
Q ss_pred EEEECCCceEEEeee-cCCCeeEEEEec
Q 038802 298 KVFDYGKMKVTHSMR-FPAPLMSVAFSP 324 (532)
Q Consensus 298 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 324 (532)
.++++..... ..+. ..+.+...+|+|
T Consensus 401 ~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 401 MLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEECCCCce-EECcCCCCCcCCCccCC
Confidence 7777754333 3333 345566777776
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=6.6e-10 Score=109.81 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=147.7
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEE---EEEcCCC--CEEEEECCCCceEEEecCCCCCEEEEEeecCC
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLL---AASDLSG--LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLD 147 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~ 147 (532)
..|.+.|.+.+.. +.+......+..-.|+|||+.+ ++...+| .|.+.++.+++.... ....+......|+| |
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP-D 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP-R 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC-C
Confidence 3677778765443 3454455566778999999752 2444444 578888887754332 22444456689999 8
Q ss_pred CcEEEEEeC-CC----eEEEEECCCC---eEEEeccCCCCceEEEEEeCCCCCEEEEEe-CCCeEEEEE--cccCCc-ee
Q 038802 148 KLHLVSGGD-DG----IVKFWDVAGE---SVVLDLFGHKDYVRCGDCSPVNGDMFVTGS-YDHTVKLWD--VRVENS-KS 215 (532)
Q Consensus 148 ~~~l~s~s~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd--~~~~~~-~~ 215 (532)
++.|+..+. +| .+..|++..+ ........+.......+|+| +++.|+..+ .+|...+|. +..... ..
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceE
Confidence 877776543 23 3445777642 33333333333446789999 888777655 466555554 432111 22
Q ss_pred EEEecCCCcEEEEEEecCCCEEEEEc--C--CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEE-E
Q 038802 216 VMEVNHGKPIEDVMFLPSGGLIATAG--G--NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRIL-S 290 (532)
Q Consensus 216 ~~~~~~~~~v~~i~~~~~~~~l~~~~--d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-s 290 (532)
.+. .+...+....|+|+|+.|+..+ + ..|.+||+.++ +. ..+......+....|+|++ ..|+ +
T Consensus 321 ~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~wSpDG---------~~L~f~ 388 (428)
T PRK01029 321 LLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSWAIDS---------LHLVYS 388 (428)
T ss_pred Eec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEECCCC---------CEEEEE
Confidence 222 3345667889999999887765 2 37999999876 33 2333333456788999995 4444 4
Q ss_pred Eec--CCeEEEEECCCceEEEeeecCCCeeEEEEecCC
Q 038802 291 VAL--DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDC 326 (532)
Q Consensus 291 ~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (532)
+.. .+.|.++|+.+++........+.+...+|+|-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 433 356889999888766655555667778888753
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=8e-12 Score=121.25 Aligned_cols=287 Identities=11% Similarity=0.127 Sum_probs=195.6
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC-ceEEEEeeccC--ceeEEEEEccCC--CEEEEEcCCCCEEEEECCC
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQT-LEKHSAISSFK--DVVTCSSFRPDG--SLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~ 124 (532)
-.+++.++..+|.|+-++.++.-| +.+.|+.. +...+-+ .|. -.|-.+.|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 456788999999999999988766 45556654 3333222 232 356677888743 3344444455566899843
Q ss_pred ---CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-EEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 125 ---RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 125 ---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
......+.+|...|+.+.|+|.+...+++++.|..+..||+++.. ++..+..-...-..+.|+..+++.+|+ +..
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg 179 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHG 179 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccC
Confidence 344455678999999999999889999999999999999998754 444444444455678999866666665 455
Q ss_pred CeEEEEEcccCCceeEEEecCCCcEEEEEEecC-CCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNE 278 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (532)
..|.+||++.+.........|...|..+.|+.- ...+.+++ |++|+.||.....+.-........+|+.-++.|-|.
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~- 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE- 258 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc-
Confidence 679999999887766666678888898988762 22444444 999999998755333333444566788888888763
Q ss_pred CCccccccEEEEEecCCeEEEEECCC----------ceEEEeee-cCCCeeEEEEecC----------CCEEEEEecCCc
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGK----------MKVTHSMR-FPAPLMSVAFSPD----------CMTRVIGTSNGT 337 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~-~~~~v~~~~~s~~----------~~~l~~g~~dg~ 337 (532)
+.++.-.-.+..+.+++.++ .+.+++|. |...|...-|-.. .-.|++-+.|..
T Consensus 259 ------g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 259 ------GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ------eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 33333332333454444332 45667776 6666665555322 236999999999
Q ss_pred EEEEeecCc
Q 038802 338 IFAGRRKKK 346 (532)
Q Consensus 338 i~iw~~~~~ 346 (532)
+++|.+...
T Consensus 333 lrlWpI~~~ 341 (1081)
T KOG0309|consen 333 LRLWPIDSQ 341 (1081)
T ss_pred eEeeeccHH
Confidence 999999765
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=5.2e-12 Score=133.49 Aligned_cols=200 Identities=12% Similarity=0.216 Sum_probs=163.6
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE 168 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 168 (532)
..+-..|.++.=+|...+-++|+.||.|++|....++.+..++ .....|+.+.|+. .|+.+..+..||.+.+|.+. .
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-C
Confidence 3445778888888988999999999999999998888877765 2348899999998 88889999999999999987 6
Q ss_pred eEEEeccCCCCceEEEEEeCCCCCEEEEEe---CCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCe
Q 038802 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGS---YDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNS 244 (532)
Q Consensus 169 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~ 244 (532)
++....+.|......+.|.. ..+++++ .++.+.+||..-..........|.+.++++++-|..+++++|+ +|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 66777788988888888864 5666654 4678999998765555555578999999999999999999999 999
Q ss_pred EEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC
Q 038802 245 VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP 314 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (532)
|++||++.. +..+.++. +. . ..++++|+..|.++||++.....++++.+.
T Consensus 2360 v~l~D~rqr-ql~h~~~~---------~~-~---------~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2360 VCLFDIRQR-QLRHTFQA---------LD-T---------REYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EEEeehHHH-HHHHHhhh---------hh-h---------hheeeccCcccceEEEEccccchhhcCchh
Confidence 999999875 55555543 22 2 578999999999999999998888887643
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.36 E-value=1.4e-09 Score=106.88 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=161.7
Q ss_pred CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEE--
Q 038802 62 TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVR-- 139 (532)
Q Consensus 62 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~-- 139 (532)
++..+++++.++.+..+|..+|+........ +.+.+.-.. .+..++.++.+|.+..||..+++.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 3557888888999999999999988766542 222221111 345677778899999999999998877654332211
Q ss_pred ---EEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCC----c---eEEEEEeC-CCCCEEEEEeCCCeEEEEEc
Q 038802 140 ---FVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKD----Y---VRCGDCSP-VNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 140 ---~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~---v~~i~~~~-~~~~~l~s~s~dg~i~iwd~ 208 (532)
+.... + ..++.++.+|.+..+|.++++.+........ . ...+.-+| ..+..+++++.+|.+..||.
T Consensus 182 ~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 11121 3 3677888899999999999987654321100 0 00010011 03467888888999999999
Q ss_pred ccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCC-CcceEEEEEeccCCCCCcccccc
Q 038802 209 RVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESH-NKTVTSVCVGRVGNESGEEAMQY 286 (532)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 286 (532)
.+++..-... ... ...... .+..++.++ +|.+..+|..++ +.+...... .....+.... +.
T Consensus 259 ~tG~~~W~~~--~~~-~~~p~~--~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp~i~-----------g~ 321 (377)
T TIGR03300 259 RSGRVLWKRD--ASS-YQGPAV--DDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAPAVV-----------GG 321 (377)
T ss_pred CCCcEEEeec--cCC-ccCceE--eCCEEEEECCCCeEEEEECCCC-cEEEccccccCCccccCEEE-----------CC
Confidence 8865433222 111 122222 344555555 899999999877 555443221 1112222221 45
Q ss_pred EEEEEecCCeEEEEECCCceEEEeeecCC-CeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 287 RILSVALDGYMKVFDYGKMKVTHSMRFPA-PLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 287 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
.+++++.+|.|+++|..+++.+..++... ++..--...+ ..|+.++.||.|+.|
T Consensus 322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 322 YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 78899999999999999999998887443 3333222233 458899999999876
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.6e-12 Score=118.44 Aligned_cols=279 Identities=16% Similarity=0.211 Sum_probs=190.3
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC-------ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT-------LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLI 117 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 117 (532)
..+.||...|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|.++.|-.+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 44689999999998777778899999999999998753 34667889999999999999999888876 7889
Q ss_pred EEEECCCCceEEEecC--CCCCEEEEEeecC-CCcEEEEE-eCCCeEEEEECCCCeEEEec-----cCCCCceEEEEEeC
Q 038802 118 QVFDVKSRTPLRRLKS--HTRPVRFVKYPFL-DKLHLVSG-GDDGIVKFWDVAGESVVLDL-----FGHKDYVRCGDCSP 188 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~--h~~~i~~~~~~~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~ 188 (532)
.+||.--++.+..... ..+.+..+...+. +...++.| +...+|+++|.+..+-...+ .+.+..++++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999877766553321 1222333333332 34444444 78899999999887654443 34556789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEE-EEccCCCeeeEEccCCCcc
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKI-WDLIGGGKMVYSMESHNKT 266 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~i-wd~~~~~~~~~~~~~~~~~ 266 (532)
.|+.++.+-..|+|.+.|.++++.+..+. +.......++ .|..+.++... |.++.+ |...++ ....+.+....+
T Consensus 887 -~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppep 962 (1034)
T KOG4190|consen 887 -KGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPEP 962 (1034)
T ss_pred -CcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCcc
Confidence 99999999999999999999976544333 2222222222 24555666555 888888 876555 333333322222
Q ss_pred eEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC-C------ceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEE
Q 038802 267 VTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG-K------MKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIF 339 (532)
Q Consensus 267 i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 339 (532)
..-+. .. +.-++++.....+.+|--. . -..++.-.+++..++++.-|-+.-+..|...|.|.
T Consensus 963 ahflq--sv---------gpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 963 AHFLQ--SV---------GPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred hhhhh--cc---------CceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence 11111 11 3457777777778887421 1 11222223678889999999888888999999887
Q ss_pred E
Q 038802 340 A 340 (532)
Q Consensus 340 i 340 (532)
+
T Consensus 1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred e
Confidence 5
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=9.7e-09 Score=96.58 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=154.2
Q ss_pred EcCCCCeEEEEEe----------CCeEEEEeCCCceEEEEeeccCc-------eeEEEEEccCCCEEEEEc-C-CCCEEE
Q 038802 59 FSPTTSHLFAATH----------SASLTLFSSQTLEKHSAISSFKD-------VVTCSSFRPDGSLLAASD-L-SGLIQV 119 (532)
Q Consensus 59 ~sp~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~g~-~-dg~i~i 119 (532)
++||++.++++.. +..|.+||..+++.+..+....+ ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 68999999999999988864322 334789999999999776 3 689999
Q ss_pred EECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC-CeE-EEe---ccCCCCceEE-EEEeCCCCCE
Q 038802 120 FDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG-ESV-VLD---LFGHKDYVRC-GDCSPVNGDM 193 (532)
Q Consensus 120 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~-~~~---~~~~~~~v~~-i~~~~~~~~~ 193 (532)
.|+.+++.+..+.... +..-...+ +.. ..+-+.||......+.+ ++. ... +.....++.. -.+.+.++..
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~--e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTA--NDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEec--CCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999998887422 22222222 222 22333455544433322 221 111 1110111100 0334536666
Q ss_pred EEEEeCCCeEEEEEcccCCc-----eeEEEec------CCCcEEEEEEecCCCEEEEEc-----------CCeEEEEEcc
Q 038802 194 FVTGSYDHTVKLWDVRVENS-----KSVMEVN------HGKPIEDVMFLPSGGLIATAG-----------GNSVKIWDLI 251 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~-----~~~~~~~------~~~~v~~i~~~~~~~~l~~~~-----------d~~i~iwd~~ 251 (532)
++.... |+|.+.|+..... ....... ..+.+.-++++|+++.+.... ++.|.++|..
T Consensus 209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 666555 9999999644321 1111111 233455699999988777632 2589999998
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECCCceEEEeee
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYGKMKVTHSMR 312 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 312 (532)
+. +.+..+.. ...+..++++|++ ..+|++.. .++.|.++|..+++.+..+.
T Consensus 288 t~-kvi~~i~v-G~~~~~iavS~Dg--------kp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 288 TG-KRLRKIEL-GHEIDSINVSQDA--------KPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CC-eEEEEEeC-CCceeeEEECCCC--------CeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 87 66666653 4578999999995 32555444 68899999999999999884
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.4e-10 Score=111.06 Aligned_cols=225 Identities=15% Similarity=0.096 Sum_probs=140.6
Q ss_pred CCccCccccCeeEEEEcCCCCeEE---EEEeC--CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC-CC--
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLF---AATHS--ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL-SG-- 115 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~---~~~~d--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg-- 115 (532)
+..+......+.+-.|+|||+.++ +...+ ..|++.++.+++... +....+.....+|+|||+.|+..+. +|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 344555666778889999997532 33333 368888988775433 3334555567899999998886542 23
Q ss_pred C--EEEEECCCC---ceEEEecCCCCCEEEEEeecCCCcEEEEEe-CCCeEEEE--ECCC-CeEEEeccCCCCceEEEEE
Q 038802 116 L--IQVFDVKSR---TPLRRLKSHTRPVRFVKYPFLDKLHLVSGG-DDGIVKFW--DVAG-ESVVLDLFGHKDYVRCGDC 186 (532)
Q Consensus 116 ~--i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~i~~ 186 (532)
. +.+|++..+ ........+.+.....+|+| ++..|+..+ .+|...+| ++.. +.....+..+...+....|
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 3 344676642 33333333334446789999 887766655 46654454 4432 2233444445556778899
Q ss_pred eCCCCCEEEEEeCC---CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc----CCeEEEEEccCCCeeeEE
Q 038802 187 SPVNGDMFVTGSYD---HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG----GNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 187 ~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----d~~i~iwd~~~~~~~~~~ 259 (532)
+| +++.|+..+.+ ..|.+||+.+++..... .....+.+..|+|+|+.|+... ...|.++|+.++ +. ..
T Consensus 335 SP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g-~~-~~ 409 (428)
T PRK01029 335 SP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK-KT-RK 409 (428)
T ss_pred CC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CE-EE
Confidence 99 89888766543 36999999876543332 2234567899999999776543 247888898765 32 22
Q ss_pred ccCCCcceEEEEEecc
Q 038802 260 MESHNKTVTSVCVGRV 275 (532)
Q Consensus 260 ~~~~~~~i~~~~~~~~ 275 (532)
+....+.+...+|+|.
T Consensus 410 Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGSGEKRFPSWGAF 425 (428)
T ss_pred eecCCCcccCceecCC
Confidence 3234455667788775
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2.3e-10 Score=110.94 Aligned_cols=264 Identities=11% Similarity=0.087 Sum_probs=183.7
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCc---------------eEEEEeeccCceeEEEEEccCCCEEEEEcCCC
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTL---------------EKHSAISSFKDVVTCSSFRPDGSLLAASDLSG 115 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 115 (532)
+....|+.|+....++++|+.||.+++..+.+. ..-+++.+|+..|..+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 346789999999999999999999999876431 22346789999999999999999999999999
Q ss_pred CEEEEECCCCceEEEec--CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCE
Q 038802 116 LIQVFDVKSRTPLRRLK--SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDM 193 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 193 (532)
.|.+|-+..++-..... ..++.|.+++|+. ++..++..-.||.|.+=.++..+... -.-.......+.|++ +...
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwg-KeLkg~~l~hv~ws~-D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWG-KELKGQLLAHVLWSE-DLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecc-hhcchheccceeecc-cHHH
Confidence 99999998776443332 3467789999998 99999999999999887776443221 111112234678998 8888
Q ss_pred EEEEeCCCeEEEEEcccCCc-----eeEEEe-----cCCCcEEEEEEe--------cCCCEEEEEc-CCeEEEEEccCCC
Q 038802 194 FVTGSYDHTVKLWDVRVENS-----KSVMEV-----NHGKPIEDVMFL--------PSGGLIATAG-GNSVKIWDLIGGG 254 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~-----~~~~~~-----~~~~~v~~i~~~--------~~~~~l~~~~-d~~i~iwd~~~~~ 254 (532)
++.+-..|.+.+||....-. .+.... ..+..|-.+.|. |+...++.+- .|.+.+..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 88888889999999753211 111110 122235556654 3666777777 6788877655554
Q ss_pred eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC---------eEEEEECCCceEEEeeecC-CCeeEEEEec
Q 038802 255 KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG---------YMKVFDYGKMKVTHSMRFP-APLMSVAFSP 324 (532)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~ 324 (532)
.++..-. .-.+....|+++ +..|+.+|.+. .|.+|. .-|..+.+++.+ ..|++++|-.
T Consensus 251 ~Pvv~dt--gm~~vgakWnh~---------G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg 318 (1189)
T KOG2041|consen 251 EPVVVDT--GMKIVGAKWNHN---------GAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG 318 (1189)
T ss_pred CCeEEec--ccEeecceecCC---------CcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC
Confidence 4443332 356889999999 56788887642 455554 345666677644 4677777766
Q ss_pred CCCEE
Q 038802 325 DCMTR 329 (532)
Q Consensus 325 ~~~~l 329 (532)
.|-.+
T Consensus 319 ~gLri 323 (1189)
T KOG2041|consen 319 TGLRI 323 (1189)
T ss_pred CceEE
Confidence 55433
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=2.5e-11 Score=117.89 Aligned_cols=244 Identities=21% Similarity=0.309 Sum_probs=173.7
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCC-CceEEEecCC--CCCEEEEEeecCC-CcEEEEEeCCCeEEEEECCC-
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS-RTPLRRLKSH--TRPVRFVKYPFLD-KLHLVSGGDDGIVKFWDVAG- 167 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h--~~~i~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~- 167 (532)
.+++..+.++|.|+-+|.++.-| +.+.|+.. +.+.+-+. | .-.|..+.|+|.. ..+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788899999999999998777 55677754 33333222 3 2346677787632 23344444445567898753
Q ss_pred --CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEEEcCCe
Q 038802 168 --ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIATAGGNS 244 (532)
Q Consensus 168 --~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~ 244 (532)
...-..+.+|...|+.+.|+|.....+++++.|..+..||+++..........-...-..++|+- ++..+++..++.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 23344567899999999999988999999999999999999986554444434455667788986 556666666889
Q ss_pred EEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc--eEEEeeecCCCeeEEEE
Q 038802 245 VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM--KVTHSMRFPAPLMSVAF 322 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~ 322 (532)
|.+||++.+..++..+++|...|+.+.|...- ...+.+++.||+|++||.... +..+......+|+.-.+
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhh--------hhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 99999999999999999999999999987653 567899999999999998753 33344456678888888
Q ss_pred ecCCCEEEEEec--CCcEEEEeecCc
Q 038802 323 SPDCMTRVIGTS--NGTIFAGRRKKK 346 (532)
Q Consensus 323 s~~~~~l~~g~~--dg~i~iw~~~~~ 346 (532)
.|-|.-.++--. +..+.+++....
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccch
Confidence 886654333222 224555554443
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.7e-08 Score=91.33 Aligned_cols=265 Identities=14% Similarity=0.149 Sum_probs=176.6
Q ss_pred CCeEEEEeCCC--ceE-EEEeeccCceeEEEEEccCCCEEEEEcC---CCCEEEEECCC--CceE--EEecCCCCCEEEE
Q 038802 72 SASLTLFSSQT--LEK-HSAISSFKDVVTCSSFRPDGSLLAASDL---SGLIQVFDVKS--RTPL--RRLKSHTRPVRFV 141 (532)
Q Consensus 72 d~~v~i~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~--~~~~--~~~~~h~~~i~~~ 141 (532)
+.-|++|++.+ ++. ........+.++-++|+|+++.|.++.. +|.|..|.++. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799998873 221 1122334677899999999999998854 57788887764 4322 2222223344788
Q ss_pred EeecCCCcEEEEEeC-CCeEEEEECCC-CeEEE--eccCCCCc----------eEEEEEeCCCCCEEEEEeC-CCeEEEE
Q 038802 142 KYPFLDKLHLVSGGD-DGIVKFWDVAG-ESVVL--DLFGHKDY----------VRCGDCSPVNGDMFVTGSY-DHTVKLW 206 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~i~~~~~~~~~l~s~s~-dg~i~iw 206 (532)
++++ ++.+++++.. -|.|.++-++. |.... ....|.+. +.+..+.| +++++++..- --.|.+|
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEE
Confidence 9998 8888887764 57899998865 32211 12234444 77888999 8888887654 2369999
Q ss_pred EcccCCceeEE--EecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEEccC---------CCcceEEEEEe
Q 038802 207 DVRVENSKSVM--EVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYSMES---------HNKTVTSVCVG 273 (532)
Q Consensus 207 d~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~---------~~~~i~~~~~~ 273 (532)
++..+...... ....+..-..|.|+|++++..+.. +++|.+|........+..++. -......+.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99865443322 235567778999999999988887 899999998764222332221 23456788889
Q ss_pred ccCCCCCccccccEEEEEec-CCeEEEEECCC--ceEE--Eeee-cCCCeeEEEEecCCCEEEEEecCC-cEEEEeecCc
Q 038802 274 RVGNESGEEAMQYRILSVAL-DGYMKVFDYGK--MKVT--HSMR-FPAPLMSVAFSPDCMTRVIGTSNG-TIFAGRRKKK 346 (532)
Q Consensus 274 ~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~~--~~~~-~~~~v~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~ 346 (532)
++ +++|.++.. ...|.+|.+.. +++. .... +......+.|+++|++|+++..++ .|.+|.++..
T Consensus 253 ~d---------GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 253 PD---------GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CC---------CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 98 566666543 34788887654 3322 2222 233478999999999999988764 5999988765
Q ss_pred c
Q 038802 347 E 347 (532)
Q Consensus 347 ~ 347 (532)
.
T Consensus 324 T 324 (346)
T COG2706 324 T 324 (346)
T ss_pred C
Confidence 4
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.1e-09 Score=99.95 Aligned_cols=272 Identities=20% Similarity=0.272 Sum_probs=177.4
Q ss_pred CCCcccccccCCCc---cCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC--CE
Q 038802 33 TPESKYWSSFKPHQ---IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG--SL 107 (532)
Q Consensus 33 ~~~~~~w~~~~~~~---~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 107 (532)
.+..++|+.-.... +..-...-++..|++|..+. +=-..+.+.+|+..+.+... -.-|...|+.+.++|.+ ..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred CCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCce
Confidence 45667887654211 11111111688999988643 33345889999987743322 23457789999999863 34
Q ss_pred EEE-----EcCCCCEEEEECCCCceEEEe---cCCCCCEEEEEeecCCCcEEEEEeC--C---------CeEEEEECCCC
Q 038802 108 LAA-----SDLSGLIQVFDVKSRTPLRRL---KSHTRPVRFVKYPFLDKLHLVSGGD--D---------GIVKFWDVAGE 168 (532)
Q Consensus 108 l~~-----g~~dg~i~iwd~~~~~~~~~~---~~h~~~i~~~~~~~~~~~~l~s~s~--d---------g~i~iwd~~~~ 168 (532)
+|+ ++.-+.|+||.......-..+ .-....=..+.|++....+|+.++. | .++++.+++..
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 553 355668999987622111111 0112222456787744445554443 2 46888888844
Q ss_pred eEEEeccCCCCceEEEEEeCCCCCEEEE--EeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C---
Q 038802 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVT--GSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G--- 242 (532)
Q Consensus 169 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d--- 242 (532)
.+...+. ..++|.++.|+| ++.-|++ |-.-.++.+||++. ..++.++ .++=+++-|+|.|++++.++ +
T Consensus 262 s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~---~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 262 SVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG---KPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLP 335 (566)
T ss_pred eEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC---CEeEeCC-CCCccceEECCCCCEEEEeecCCCC
Confidence 4444443 578999999999 7654443 44466899999874 4455543 56778899999999999888 4
Q ss_pred CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec------CCeEEEEECCCceEEEeeecCCC
Q 038802 243 NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL------DGYMKVFDYGKMKVTHSMRFPAP 316 (532)
Q Consensus 243 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~ 316 (532)
|.+-|||..+. +++..+.... .+-+.|+|+ +.+++|++. |+.++||++ +|..++....+..
T Consensus 336 G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~Pd---------Ge~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sE 402 (566)
T KOG2315|consen 336 GDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPD---------GEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSE 402 (566)
T ss_pred CceEEEeccch-hhccccccCC--ceEEEEcCC---------CcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHh
Confidence 79999999885 7777776543 456899999 577887765 688999996 4555555555556
Q ss_pred eeEEEEecC
Q 038802 317 LMSVAFSPD 325 (532)
Q Consensus 317 v~~~~~s~~ 325 (532)
.+.+.|-|.
T Consensus 403 L~qv~W~P~ 411 (566)
T KOG2315|consen 403 LLQVEWRPF 411 (566)
T ss_pred Hhheeeeec
Confidence 888888874
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-10 Score=101.64 Aligned_cols=241 Identities=17% Similarity=0.283 Sum_probs=165.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce-----EEEEeeccC------------ceeEEEEEccCC--CEEEE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE-----KHSAISSFK------------DVVTCSSFRPDG--SLLAA 110 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 110 (532)
..+.|+++.|...|.|+++|...|+|.+|.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999754322 222344553 467888887654 35666
Q ss_pred EcCCCCEEEEECCCCc-------------------e-----------------------EEEe-cCCCCCEEEEEeecCC
Q 038802 111 SDLSGLIQVFDVKSRT-------------------P-----------------------LRRL-KSHTRPVRFVKYPFLD 147 (532)
Q Consensus 111 g~~dg~i~iwd~~~~~-------------------~-----------------------~~~~-~~h~~~i~~~~~~~~~ 147 (532)
.+.|.+|++|.+.... + .+.+ ..|..-|.++.|+. +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence 6779999999874320 0 0111 35777788899986 6
Q ss_pred CcEEEEEeCCCeEEEEECCCCe---EEEeccCCC-----CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce----e
Q 038802 148 KLHLVSGGDDGIVKFWDVAGES---VVLDLFGHK-----DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK----S 215 (532)
Q Consensus 148 ~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~ 215 (532)
...+++ ++|-.|.+|+++-.. .+..++.|. ..|++..|+|...+.+.-.+..|.|++-|+|+.... .
T Consensus 184 ~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 655555 467889999986322 233334443 468889999977788888888999999999853210 1
Q ss_pred EE--Ee---------cCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCc------------ce---EE
Q 038802 216 VM--EV---------NHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNK------------TV---TS 269 (532)
Q Consensus 216 ~~--~~---------~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~i---~~ 269 (532)
.+ .. +-...|..+.|+++|+++++-+--++++||.+....++.++.-|.. .| ..
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 00 1235688899999999999887789999999988788888865532 12 23
Q ss_pred EEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
+.|+.+ ...+++|+.....-+|-
T Consensus 343 isfSgd---------~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGD---------DKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCC---------cccccccccccceeeec
Confidence 455544 55677777766666654
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=8.7e-09 Score=112.21 Aligned_cols=240 Identities=15% Similarity=0.096 Sum_probs=157.8
Q ss_pred EEEEEccC-CCEEEEEcCCCCEEEEECCCCceEEEecC-C-------------CCCEEEEEeecCCCcEEEEE-eCCCeE
Q 038802 97 TCSSFRPD-GSLLAASDLSGLIQVFDVKSRTPLRRLKS-H-------------TRPVRFVKYPFLDKLHLVSG-GDDGIV 160 (532)
Q Consensus 97 ~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h-------------~~~i~~~~~~~~~~~~l~s~-s~dg~i 160 (532)
..++++++ +.++++-+.++.|.+||.. +..+..+.+ . -.....+++++ +++.|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 35788774 5566677778899999976 444443332 1 12347888988 66655544 456789
Q ss_pred EEEECCCCeEEEeccCC-----------------CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe----
Q 038802 161 KFWDVAGESVVLDLFGH-----------------KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV---- 219 (532)
Q Consensus 161 ~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---- 219 (532)
+++|..++.. .++.+. -..-..++++|.++.++++.+.++.|++||..++........
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 222110 012357899985567778888889999999876432211100
Q ss_pred ---------cCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeeeEE------------ccCC--------CcceE
Q 038802 220 ---------NHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVYS------------MESH--------NKTVT 268 (532)
Q Consensus 220 ---------~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~------------~~~~--------~~~i~ 268 (532)
..-.....++++|++..|+.+. ++.|++||+.++...... +..+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0112346799999998555444 689999998765321111 0000 01235
Q ss_pred EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC--------------CCeeEEEEecCCCEEEEEec
Q 038802 269 SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP--------------APLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~g~~ 334 (532)
+++++++ +.++++-+.++.|++||..++.+....... .....++++++|+.+++-+.
T Consensus 808 Gvavd~d---------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 808 GVLCAKD---------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred eeeEeCC---------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 7778877 567888888999999999887766443211 24678999999999888899
Q ss_pred CCcEEEEeecCccc
Q 038802 335 NGTIFAGRRKKKEN 348 (532)
Q Consensus 335 dg~i~iw~~~~~~~ 348 (532)
++.|++|++.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999988754
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=1.8e-09 Score=92.92 Aligned_cols=233 Identities=13% Similarity=0.022 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCCCEEEEECCCCce-EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTP-LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR 182 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 182 (532)
.-.+||.|+..|...+|...+.+. ......|...|+-+.=..+...-+..++.|.++++.+++.+..-.......-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999986543 3333445444432221111334577788899999998875433222211112378
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeE--EEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEE
Q 038802 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSV--MEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYS 259 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 259 (532)
++++++ ++.++++.+....|..|.+........ ........-.+..|+.....+|++. ||++.|||++....+...
T Consensus 163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 899999 999999999999999999876433222 2224445556788999888999998 999999999977554433
Q ss_pred ----ccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC---------CCeeEEEEecCC
Q 038802 260 ----MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP---------APLMSVAFSPDC 326 (532)
Q Consensus 260 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~s~~~ 326 (532)
-..|.+.+..+.|++.|. -.+|+..-.-+.+.+.|++++...+.+..+ ..|..-.|+.++
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~-------lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGL-------LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hcccCCCCCCceEEEEecCCCc-------ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 345889999999998753 456666666788999999998766555321 235666666666
Q ss_pred CEEEEEecCCcEEEEeecC
Q 038802 327 MTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 327 ~~l~~g~~dg~i~iw~~~~ 345 (532)
..+.+.+.+ .+.=|++.+
T Consensus 315 ~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cccccccch-hhheeeccc
Confidence 655554443 334444443
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=6.9e-08 Score=87.39 Aligned_cols=280 Identities=12% Similarity=0.120 Sum_probs=183.0
Q ss_pred CCCccccccc------CCCccCccccCeeEEEEcCCCCeEEEEEeC---CeEEEEeCCC--ceEEE--EeeccCceeEEE
Q 038802 33 TPESKYWSSF------KPHQIPGLVSSINSIVFSPTTSHLFAATHS---ASLTLFSSQT--LEKHS--AISSFKDVVTCS 99 (532)
Q Consensus 33 ~~~~~~w~~~------~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d---~~v~i~~~~~--~~~~~--~~~~~~~~v~~~ 99 (532)
...+..|+.- ...++..+.+.++-++|+|+++.|.++..+ |.|.-|.++. |+... .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3445555533 234456778889999999999999888664 6677776653 44322 222223444889
Q ss_pred EEccCCCEEEEEcC-CCCEEEEECCC-CceEE--EecCCCCC----------EEEEEeecCCCcEEEEEeC-CCeEEEEE
Q 038802 100 SFRPDGSLLAASDL-SGLIQVFDVKS-RTPLR--RLKSHTRP----------VRFVKYPFLDKLHLVSGGD-DGIVKFWD 164 (532)
Q Consensus 100 ~~~~~~~~l~~g~~-dg~i~iwd~~~-~~~~~--~~~~h~~~----------i~~~~~~~~~~~~l~s~s~-dg~i~iwd 164 (532)
+++++|++++++.. .|.|.++-+.. |.... ....|.+. +.+..|.| +++++++..- --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998864 57899999855 43221 12235555 88899999 8888887753 24689999
Q ss_pred CCCCeEEEec---cCCCCceEEEEEeCCCCCEEEEEeC-CCeEEEEEcccC--CceeEEE-------ecCCCcEEEEEEe
Q 038802 165 VAGESVVLDL---FGHKDYVRCGDCSPVNGDMFVTGSY-DHTVKLWDVRVE--NSKSVME-------VNHGKPIEDVMFL 231 (532)
Q Consensus 165 ~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~~~~~-------~~~~~~v~~i~~~ 231 (532)
+..++....- ......-+.|.|+| ++++.+..+. +++|.+|..... +...... +........|.++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9877543221 12344567899999 8888776655 889999998763 2111111 1234567789999
Q ss_pred cCCCEEEEEc--CCeEEEEEccCCCee---eEEccCCCcceEEEEEeccCCCCCccccccEEEEEecC-CeEEEEECC--
Q 038802 232 PSGGLIATAG--GNSVKIWDLIGGGKM---VYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD-GYMKVFDYG-- 303 (532)
Q Consensus 232 ~~~~~l~~~~--d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~-- 303 (532)
++|++|.++. .+.|.+|.+...+.. +.....+...-....+++. +.+|++++.+ ..|.+|..+
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~---------g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS---------GRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC---------CCEEEEEccCCCcEEEEEEcCC
Confidence 9999999997 468889988754322 2223334444678888888 5677776665 568888654
Q ss_pred CceEEEeee--cCCCeeEEEEe
Q 038802 304 KMKVTHSMR--FPAPLMSVAFS 323 (532)
Q Consensus 304 ~~~~~~~~~--~~~~v~~~~~s 323 (532)
+|++..... ......|+.|.
T Consensus 324 TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 324 TGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CceEEecccccCCCCcEEEEEc
Confidence 566544433 22344555553
No 281
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.24 E-value=6.4e-11 Score=93.29 Aligned_cols=102 Identities=18% Similarity=0.295 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhhchHHHHhcCCChHhHHHHHHHHHhccC--CCCchHHHHHHHHHHHHhcccccccc-HHHHHHHHHHH
Q 038802 426 ENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHST--VPRYSGLLIGLMEKVLEMRAKDIRTC-DALKGHIRNLK 502 (532)
Q Consensus 426 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~il~~~~~~~~~~-~~l~~~~~~l~ 502 (532)
+.+..+++.. ..+.++.++..+|..++.+||+|+.+++. ++.+.+++..|++.|+..|+..+..+ +++...|..|+
T Consensus 4 ~ll~~vl~~~-~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~ 82 (110)
T PF04003_consen 4 ELLLEVLERI-PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQ 82 (110)
T ss_pred HHHHHHHhhC-CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444555433 33889999999999999999999999885 88999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHhh
Q 038802 503 RSVEEEIRIQQSLQEIQ-GIISPLLRI 528 (532)
Q Consensus 503 ~~~~~~~~~~~~l~~~~-g~l~~~~~~ 528 (532)
+.++++.+.+++++++. |+|++|.+.
T Consensus 83 ~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 83 KILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999999 999999874
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.5e-08 Score=92.28 Aligned_cols=276 Identities=11% Similarity=0.110 Sum_probs=178.5
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC-----------CCCEEEEE
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL-----------SGLIQVFD 121 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd 121 (532)
.=+-+.|||.|.||++--.-| |.+|--.+...++.+. | ..|.-+.|||+.+||++-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346789999999999988755 8899877666555553 2 45888999999999998642 24699999
Q ss_pred CCCCceEEEecCC--CCCE-EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 122 VKSRTPLRRLKSH--TRPV-RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 122 ~~~~~~~~~~~~h--~~~i-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
+.+|...+.+... ...+ .-..||. ++++++.-.. ..|.||+..+...+..-.-.-..|....|+| .+++||-=+
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEc
Confidence 9999988887652 2222 3457887 8888887665 5789999876544433333456788899999 666666432
Q ss_pred CC-----CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC-----------CeEEEEEccCCCeeeEEccC
Q 038802 199 YD-----HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-----------NSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 199 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d-----------~~i~iwd~~~~~~~~~~~~~ 262 (532)
.. ..+.+-.+.+.........- .-.=..+-|-.+|.+|+.--| ..+.|+.++....++....
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve- 443 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE- 443 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccce-eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-
Confidence 21 22344444332222221111 111123456667777776432 2466777776645555443
Q ss_pred CCcceEEEEEeccCCCCCccccccEEEEEec--CCeEEEEECCC----ceEEEeeecCCCeeEEEEecCCCEEEEE---e
Q 038802 263 HNKTVTSVCVGRVGNESGEEAMQYRILSVAL--DGYMKVFDYGK----MKVTHSMRFPAPLMSVAFSPDCMTRVIG---T 333 (532)
Q Consensus 263 ~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g---~ 333 (532)
-...|...+|-|.| ..+.+..+. ..++.+|.+++ .+++..+.- ...+.+.|+|.|++++++ |
T Consensus 444 lke~vi~FaWEP~g--------dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 444 LKESVIAFAWEPHG--------DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred cchheeeeeeccCC--------CeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecc
Confidence 35678899999996 233332222 35688888773 222333322 456889999999998876 4
Q ss_pred cCCcEEEEeecC
Q 038802 334 SNGTIFAGRRKK 345 (532)
Q Consensus 334 ~dg~i~iw~~~~ 345 (532)
..|.+.++|..-
T Consensus 515 ~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 515 RRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEecch
Confidence 578899999885
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=4.5e-08 Score=106.73 Aligned_cols=239 Identities=10% Similarity=0.120 Sum_probs=157.5
Q ss_pred eEEEEcCC-CCeEEEEEeCCeEEEEeCCCceEEEEeec-c-------------CceeEEEEEccCCCEEEEEc-CCCCEE
Q 038802 55 NSIVFSPT-TSHLFAATHSASLTLFSSQTLEKHSAISS-F-------------KDVVTCSSFRPDGSLLAASD-LSGLIQ 118 (532)
Q Consensus 55 ~~i~~sp~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~g~-~dg~i~ 118 (532)
..++++++ +..+++-+.++.|++||... .....+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 45555556678999999764 44433322 1 12357889999888766654 456799
Q ss_pred EEECCCCceEEEecCC-----------------CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC-----
Q 038802 119 VFDVKSRTPLRRLKSH-----------------TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG----- 176 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h-----------------~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----- 176 (532)
++|..++. +.++.+- -.....++|+|.++..+++.+.++.|++||..++.... +.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 99987654 3333210 11235789998566677777888999999998765432 111
Q ss_pred ----C------CCceEEEEEeCCCCC-EEEEEeCCCeEEEEEcccCCceeEE-----------Eec-C--------CCcE
Q 038802 177 ----H------KDYVRCGDCSPVNGD-MFVTGSYDHTVKLWDVRVENSKSVM-----------EVN-H--------GKPI 225 (532)
Q Consensus 177 ----~------~~~v~~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~-~--------~~~v 225 (532)
+ -.....++++| +++ ++++.+.++.|++||+.++...... ..+ . -...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1 12345689999 766 6666677899999998865422111 000 0 1123
Q ss_pred EEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc-------------CCCcceEEEEEeccCCCCCccccccEEEEE
Q 038802 226 EDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME-------------SHNKTVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 226 ~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
..++++++|.++++.. ++.|++||..++ ....... +.-.....++++++ +..+++-
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d---------G~lyVaD 876 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN---------GRLFVAD 876 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCC---------CCEEEEE
Confidence 5889999999877777 789999998765 3322111 11124678899888 5678888
Q ss_pred ecCCeEEEEECCCceE
Q 038802 292 ALDGYMKVFDYGKMKV 307 (532)
Q Consensus 292 ~~dg~i~iwd~~~~~~ 307 (532)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999998765
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=2.1e-11 Score=120.74 Aligned_cols=261 Identities=19% Similarity=0.226 Sum_probs=182.9
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCC--CEEEEEC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSG--LIQVFDV 122 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~ 122 (532)
..+..|....+|++|+-+.++|++|+..|.|++|++.+|.....+.+|..+|+-+.-+.||..+++.+.-. -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 34578889999999999999999999999999999999999999999999999999999999888765433 4779998
Q ss_pred CC-CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC----CCCceEEEEEeCCCCCEEEEE
Q 038802 123 KS-RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG----HKDYVRCGDCSPVNGDMFVTG 197 (532)
Q Consensus 123 ~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~ 197 (532)
.+ +...++|. .-.++.|+. ....-+.|+......+||++++.++.++.. .+..-++..|+| ++.+++
T Consensus 1175 ~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL-- 1246 (1516)
T ss_pred ccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe--
Confidence 54 44444444 345788886 444445555556789999999987776421 222336788999 766665
Q ss_pred eCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCC
Q 038802 198 SYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
+|| .+||.+....+..+.. -..-..=.|+|+|.-++..+ -|||+++. +.++....-. -..+.|...|
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~--ft~~~~G~FHP~g~eVIINS----EIwD~RTF-~lLh~VP~Ld--qc~VtFNstG- 1313 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQ--FTDYGGGGFHPSGNEVIINS----EIWDMRTF-KLLHSVPSLD--QCAVTFNSTG- 1313 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhh--heecccccccCCCceEEeec----hhhhhHHH-HHHhcCcccc--ceEEEeccCc-
Confidence 455 4799998644443321 11112236899999888877 69999987 5444433211 2345555543
Q ss_pred CCCccccccEEEEEe-------------c----CCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEec
Q 038802 278 ESGEEAMQYRILSVA-------------L----DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~-------------~----dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 334 (532)
..++..- . -...+-+|..+...+.++....++..++-+|...++.+--.
T Consensus 1314 --------~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1314 --------DVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred --------cchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEec
Confidence 2222111 0 12356677777888888888888999988888888776543
No 285
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.1e-09 Score=97.81 Aligned_cols=258 Identities=10% Similarity=0.147 Sum_probs=163.7
Q ss_pred EEEEeCCCceEEEEeeccCceeEEEEEccCCC-EEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEE
Q 038802 75 LTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS-LLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153 (532)
Q Consensus 75 v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 153 (532)
+++.+..+.+....+.++...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ .++++++|.-++.++++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55666666666666777888999999999776 7788899999999999999999888877 789999999877888999
Q ss_pred EeCCCeEEEEECCCCeE-EEeccC--CCCceEEEEEeCC-----CCCEEEEEeCCCeEEEEEccc--CCceeEEEecCCC
Q 038802 154 GGDDGIVKFWDVAGESV-VLDLFG--HKDYVRCGDCSPV-----NGDMFVTGSYDHTVKLWDVRV--ENSKSVMEVNHGK 223 (532)
Q Consensus 154 ~s~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~i~~~~~-----~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~ 223 (532)
|-..|.|.+||++..+- +..+.+ ...+|..++..+. .+.+++..+.+ ...|.+.. +....+...+..+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 99999999999986542 222211 2234444433321 24444444433 55666543 2344455556677
Q ss_pred cEEEEEEecCCC-EEEEEc-CC---e---EEE-EEccCCCeeeEEccCCC-cce------EEEEEeccCCCCCccccccE
Q 038802 224 PIEDVMFLPSGG-LIATAG-GN---S---VKI-WDLIGGGKMVYSMESHN-KTV------TSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 224 ~v~~i~~~~~~~-~l~~~~-d~---~---i~i-wd~~~~~~~~~~~~~~~-~~i------~~~~~~~~~~~~~~~~~~~~ 287 (532)
...++.+.+..+ .|++.- +. . +-. -|..++......-..+. +.- ..+.-.++. ...
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n--------n~i 403 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN--------NYI 403 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc--------cEE
Confidence 777888887444 444443 21 1 111 11122211111112221 110 111112221 344
Q ss_pred EEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEec-CC-CEEEEEecCCcEEEEeec
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSP-DC-MTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~g~~dg~i~iw~~~ 344 (532)
+..++..+.+.+||..+++.++++....+|..++... +| .+|++ -.|..++|++..
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE 461 (463)
T ss_pred EEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhh-eecceEEEEecC
Confidence 5566667889999999999999999999999987653 33 45554 446688888764
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.17 E-value=4.2e-08 Score=91.32 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=173.4
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCC-eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSA-SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
.+|.+.|.-..+.-+++-++.|+.|| .+-|||..+++... +...-+.|.++..+++|++++++.....+.+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 57888899999998888899999999 99999998776544 44456789999999999999999989999999999998
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCC----eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC---
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG----IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY--- 199 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~--- 199 (532)
....=+...+-|+.+.|+| ++..++-+--+| .|+++|+.+++...... ....=.+-+|.| ++++|.--+.
T Consensus 435 v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~RsL 511 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARSL 511 (668)
T ss_pred eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEecccc
Confidence 7666666778899999999 999999876655 68999999887655443 233334567888 8887765543
Q ss_pred ----CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCeee-------EEccCC-Cc
Q 038802 200 ----DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMV-------YSMESH-NK 265 (532)
Q Consensus 200 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~-------~~~~~~-~~ 265 (532)
|..+.=+....-..........+ ..||-.+..-.+. ++.+-+=++.....++ ..+.+- .+
T Consensus 512 dPs~Drv~fnf~f~~vskPylv~L~~g------~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~ 585 (668)
T COG4946 512 DPSNDRVIFNFSFQRVSKPYLVVLGRG------YYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNG 585 (668)
T ss_pred CCCCCeeEEEEEEeeeccceEEEecCC------CCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCC
Confidence 22222222111111111111000 0112111111111 2222222221110111 011111 11
Q ss_pred ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 266 TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
.|.-..+--.|.. ..++..+-.-|.+.+||+++.+... ....+.++..|+||..+.. -.||.++.+++..
T Consensus 586 killfs~pi~Gef------s~yy~gq~~kG~l~~ydletkk~~e---~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 586 KILLFSYPIHGEF------SQYYWGQPEKGRLEKYDLETKKVEE---YKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEEEeeccchh------hhhhcCCCccceEEEEecchhhHHH---HhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1211111111100 2233334456788888887754321 3457899999999999888 8899999999987
Q ss_pred c
Q 038802 346 K 346 (532)
Q Consensus 346 ~ 346 (532)
+
T Consensus 656 k 656 (668)
T COG4946 656 K 656 (668)
T ss_pred C
Confidence 4
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=106.26 Aligned_cols=237 Identities=12% Similarity=0.149 Sum_probs=164.7
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc---------------eEEEecCCCCCEEEEEeecCCCcEEEEEeCC
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT---------------PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD 157 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------------~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d 157 (532)
+....|++|+.+..++|+|+.||.+++..+.+.. .-+++.||++.|..+.|+. +...|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCC
Confidence 4567899999999999999999999999875432 2345679999999999997 77788899999
Q ss_pred CeEEEEECCCCeEEEec--cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCcEEEEEEecCC
Q 038802 158 GIVKFWDVAGESVVLDL--FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSG 234 (532)
Q Consensus 158 g~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~ 234 (532)
|.|.+|-+-.+.-...+ ....+.|.+++|+. +|..++....||.|.+=.+.... ++... .......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce---ecchhcchheccceeecccH
Confidence 99999998776543322 23456788999998 99999998899988776665321 11111 12233468899998
Q ss_pred CEEEEEc-CCeEEEEEccCCC------ee-e---EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 235 GLIATAG-GNSVKIWDLIGGG------KM-V---YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 235 ~~l~~~~-d~~i~iwd~~~~~------~~-~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
+.++.+- .|.+.+||..... .+ + ..+......|..+.|.... ....+++...++.+-.+|.+.+-.-.
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~-~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP-YQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc-cccCCCCCCEEEEEEcCceehhhhhc
Confidence 8777666 8999999965431 11 1 1111222336666665322 22223346789999999998887655
Q ss_pred CceEEEeeecCCCeeEEEEecCCCEEEEEecC
Q 038802 304 KMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
+......+..+-.+....|+++|..|++++.+
T Consensus 248 ND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 248 NDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 44333344444667788888888888877653
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.1e-10 Score=108.00 Aligned_cols=244 Identities=14% Similarity=0.170 Sum_probs=170.5
Q ss_pred EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC-------CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCC
Q 038802 86 HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS-------RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG 158 (532)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg 158 (532)
...+.+|...|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|.. +..++++ .||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccC
Confidence 456788998888887666777899999999999999853 246778889999999999987 6655554 589
Q ss_pred eEEEEECCCCeEEEecc--CCCCceEEEEEeCC-CCCEEEEE-eCCCeEEEEEcccCCceeEEEec----CCCcEEEEEE
Q 038802 159 IVKFWDVAGESVVLDLF--GHKDYVRCGDCSPV-NGDMFVTG-SYDHTVKLWDVRVENSKSVMEVN----HGKPIEDVMF 230 (532)
Q Consensus 159 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~i~~ 230 (532)
.|.+||.--++.+..+. ...+.+..+...++ +..+++.| +...+|+++|.+.......+... ....+.++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987777655332 12233334444442 33444444 77899999999987766665542 3456889999
Q ss_pred ecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEE-EECCCceEE
Q 038802 231 LPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKV-FDYGKMKVT 308 (532)
Q Consensus 231 ~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~ 308 (532)
.+.|+.++++- .|.|.+.|.+++ +.+............++- |. ...++....|.++.+ |...++...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-ps---------dq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PS---------DQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-ch---------hHHHHhhcccceeEeeehhcCCeee
Confidence 99999998886 899999999988 777766655554444443 22 456777888888888 887766554
Q ss_pred Eeeec-CCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 309 HSMRF-PAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 309 ~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
...+. +.+..-+ -.-|.-++++.....+.+|.-..
T Consensus 954 ~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a 989 (1034)
T KOG4190|consen 954 LQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSA 989 (1034)
T ss_pred eccCCCCcchhhh--hccCceeEEeccCcEEEEEecch
Confidence 44432 2221111 12355677777777788876443
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.15 E-value=5e-07 Score=82.94 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=143.8
Q ss_pred EEEEcc-CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 98 CSSFRP-DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 98 ~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
+..|.+ ++.++++....+.|..|+..++.... +.... ...+++...++ .++.+..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 567887 77777777788999999998775433 22222 67777773254 455555544 45559988865433322
Q ss_pred -----CCCceEEEEEeCCCCCEEEEEeCC--------CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--
Q 038802 177 -----HKDYVRCGDCSPVNGDMFVTGSYD--------HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-- 241 (532)
Q Consensus 177 -----~~~~v~~i~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-- 241 (532)
.....+.+++.| ++++.++.... |.|..++.. ++ .... ...-...+.++|+|+++.|+.+.
T Consensus 79 ~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV-ADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE-EEEESSEEEEEEETTSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-Ce-EEEE-ecCcccccceEECCcchheeecccc
Confidence 345678899999 89887776654 456667665 22 2222 23345568999999999776554
Q ss_pred CCeEEEEEccCCCe------eeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC-
Q 038802 242 GNSVKIWDLIGGGK------MVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP- 314 (532)
Q Consensus 242 d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 314 (532)
.+.|..|++..... ....+....+..-.+++..+ +.+.++....+.|.++|.. ++.+..+..+
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~---------G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD---------GNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT---------S-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC---------CCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 67899999864322 22233333335778999887 5667777778999999987 8888888866
Q ss_pred CCeeEEEEe-cCCCEEEEEe
Q 038802 315 APLMSVAFS-PDCMTRVIGT 333 (532)
Q Consensus 315 ~~v~~~~~s-~~~~~l~~g~ 333 (532)
..+++++|. ++.+.|++.+
T Consensus 225 ~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEe
Confidence 689999995 6766666544
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=1.1e-07 Score=83.47 Aligned_cols=233 Identities=10% Similarity=0.119 Sum_probs=140.9
Q ss_pred EEEEcCCCCeEEEEEeCCeEEEEeCCCc--eEEEEeeccC---ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 56 SIVFSPTTSHLFAATHSASLTLFSSQTL--EKHSAISSFK---DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 56 ~i~~sp~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
.++.+.+|+.||+ -.|..|.|-...+. ..+....... ..=.-++|+||+.+||.+...|+|++||+... .+..
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFV 79 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEE
Confidence 3567889986654 56788888765431 1222222222 34567999999999999999999999998753 3333
Q ss_pred ecC-------CCCCEEEEEeecCC-----CcEEEEEeCCCeEEEEECCC-----CeEEEecc---CCCCceEEEEEeCCC
Q 038802 131 LKS-------HTRPVRFVKYPFLD-----KLHLVSGGDDGIVKFWDVAG-----ESVVLDLF---GHKDYVRCGDCSPVN 190 (532)
Q Consensus 131 ~~~-------h~~~i~~~~~~~~~-----~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~---~~~~~v~~i~~~~~~ 190 (532)
+.. -...|..+.|.+.. ...|++-..+|.++-|-+.. .+..+.+. .+...|.++.++| .
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-K 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-C
Confidence 332 23567777786422 33577777888888776532 23334432 2467899999999 7
Q ss_pred CCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCC---CEEEEEcCC------eEEEEEccCCCeeeEEcc
Q 038802 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG---GLIATAGGN------SVKIWDLIGGGKMVYSME 261 (532)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~d~------~i~iwd~~~~~~~~~~~~ 261 (532)
.++|+.|+.... .. .. .......+++-..-.+. +.+....++ +-.+|.+.+. +......
T Consensus 159 h~LLlVgG~~~~------~~--~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QD--GM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQG 226 (282)
T ss_pred CCEEEEeccCCC------CC--cc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccc
Confidence 777777765322 00 00 00112222222222111 111111121 1233443322 2222223
Q ss_pred CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee
Q 038802 262 SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR 312 (532)
Q Consensus 262 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (532)
.....|..+..||+ +..|++...+|.|.+|++.+.++...++
T Consensus 227 ~~~d~i~kmSlSPd---------g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 227 QEQDGIFKMSLSPD---------GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cCCCceEEEEECCC---------CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 35678999999999 6899999999999999999988777765
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=3.8e-08 Score=96.73 Aligned_cols=191 Identities=16% Similarity=0.108 Sum_probs=123.9
Q ss_pred CeeEEEEcCCCCe-EEEEEeC---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEE-cCC--CCEEEEECCCC
Q 038802 53 SINSIVFSPTTSH-LFAATHS---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAAS-DLS--GLIQVFDVKSR 125 (532)
Q Consensus 53 ~V~~i~~sp~~~~-l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d--g~i~iwd~~~~ 125 (532)
.+....|+|||+. ++..+.+ ..|+++|+.+++..... ...+......|+|||+.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 5544443 57999999887665443 345566778899999877644 333 46888888777
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeC-CC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC--
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-DG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD-- 200 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d-- 200 (532)
.. ..+..+.+......|+| +++.|+..+. .+ .|.+.|+.+++....... ... ...|+| +++.++..+..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SP-DG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVST-YKNYIVYSSRETN 341 (419)
T ss_pred cE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECC-CCCEEEEEEcCCC
Confidence 63 34443443344567999 7766665553 33 688889988776443322 111 248999 88877766553
Q ss_pred -------CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CC--eEEEEEccCC
Q 038802 201 -------HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GN--SVKIWDLIGG 253 (532)
Q Consensus 201 -------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~--~i~iwd~~~~ 253 (532)
..|.+.|+.++....... ........|+|||+.++... .+ .+.+.++...
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 267888887754333222 22334688999999776665 23 4666666543
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=2.6e-07 Score=98.95 Aligned_cols=284 Identities=15% Similarity=0.165 Sum_probs=179.9
Q ss_pred cccCeeEEEEcCCCCeEEEEEe---C---CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcC---CCCEEEE
Q 038802 50 LVSSINSIVFSPTTSHLFAATH---S---ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDL---SGLIQVF 120 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~---d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iw 120 (532)
+.+.-..|+|-.||.++|+.+- . ..++||+-+ |....+-..-.+--.+++|.|.|++||+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4556678999999999998875 2 479999955 6655544443444567899999999998754 3457777
Q ss_pred ECCCCceEEE----ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE--EEecc-CCCCceEEEEEeCCCCCE
Q 038802 121 DVKSRTPLRR----LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV--VLDLF-GHKDYVRCGDCSPVNGDM 193 (532)
Q Consensus 121 d~~~~~~~~~----~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~ 193 (532)
.-+ |-.-.. +......|..+.|++ ++..|+....|. |.+|-..+..- .+.+. .....+..+.|+|.+...
T Consensus 287 ErN-GLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 287 ERN-GLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred ecC-CcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 643 322222 224567899999999 999999877665 99999877542 22222 223345559999977777
Q ss_pred EEEEeCCCeEEEEEcc----cCC------------------------------ceeEEEecCCCcEEEEEEecCCCEEEE
Q 038802 194 FVTGSYDHTVKLWDVR----VEN------------------------------SKSVMEVNHGKPIEDVMFLPSGGLIAT 239 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~----~~~------------------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~ 239 (532)
|...+.+|.+..++.. .+. +.....+....+|.+++|++++..+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 8888776776655431 110 111123345678999999998875555
Q ss_pred Ec-CCeEEEEEccCCCee-------eEEc----------cCCCcceEEEEEeccCCCCCccccccEEEEEecC---CeEE
Q 038802 240 AG-GNSVKIWDLIGGGKM-------VYSM----------ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD---GYMK 298 (532)
Q Consensus 240 ~~-d~~i~iwd~~~~~~~-------~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~ 298 (532)
-. ||.+.+|........ ...+ ......+..++|..+ ...++....+ +.+.
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLND---------DTLLVLSDSDSNQSKIV 514 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCC---------CEEEEEEecCcccceEE
Confidence 55 898998885432110 1111 112345677777766 3444444443 6788
Q ss_pred EEECCCce---EE-EeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 299 VFDYGKMK---VT-HSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 299 iwd~~~~~---~~-~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
++++...+ .. .....++.+..+...++...++.-..+|.+...+....
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 88874332 22 22224556666666666555677777888886555443
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.5e-08 Score=95.78 Aligned_cols=208 Identities=14% Similarity=0.166 Sum_probs=141.0
Q ss_pred EEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCce-eEEEEEccCCCEEEEEcCCC-----CEEEEECCCC------
Q 038802 58 VFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDV-VTCSSFRPDGSLLAASDLSG-----LIQVFDVKSR------ 125 (532)
Q Consensus 58 ~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~------ 125 (532)
+|++.+..++.|+.+|.|.++|- +.+..+.++.+... |..+....+..+|++.+.|+ .++||+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 45677778999999999999983 35555777777766 55555444446777766654 4899998532
Q ss_pred ceE--EEecC-----CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC----CCeEEEeccCCCCceEEEEEeCCCCCEE
Q 038802 126 TPL--RRLKS-----HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA----GESVVLDLFGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 126 ~~~--~~~~~-----h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~l 194 (532)
.++ ..+.+ ...++.+++.+. +-..+++|-.||.|..+.=+ .+...........+|+.+++.. ++..+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence 233 11222 356788999988 78889999999999988421 1222222234567999999987 66652
Q ss_pred EEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEcc-CCCcceEE
Q 038802 195 VTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSME-SHNKTVTS 269 (532)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~ 269 (532)
+....-..|.+|.+....+.......|+.++.|..+++....++++++..+.+||.... .+...+. +|......
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~-~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR-GPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc-ceeeeecCCCeEEEEE
Confidence 22223357999999854423333447888999999998766688888889999998765 4444554 66654433
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.11 E-value=6.8e-08 Score=95.28 Aligned_cols=258 Identities=13% Similarity=0.146 Sum_probs=158.9
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCE----
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPV---- 138 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i---- 138 (532)
+..+++++.+|.++-+|..+|+................. .+..+++++.+|.+..+|..+|+.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 346777888899999999999988776543321111111 24467778889999999999999888775321111
Q ss_pred -EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCC-------ceEEEEEeC-CCCCEEEEEeCCCeEEEEEcc
Q 038802 139 -RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKD-------YVRCGDCSP-VNGDMFVTGSYDHTVKLWDVR 209 (532)
Q Consensus 139 -~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~-~~~~~l~s~s~dg~i~iwd~~ 209 (532)
.+-.. .+..++.++.+|.+..+|..+++.+........ ....+..+| ..+..++.++.+|.+..+|..
T Consensus 198 ~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 01111 123577788899999999999887655421100 000111111 024567777889999999998
Q ss_pred cCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCC-cceEEEEEeccCCCCCccccccEE
Q 038802 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHN-KTVTSVCVGRVGNESGEEAMQYRI 288 (532)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l 288 (532)
+++..-..... . ...+.. .++.+++...+|.+..+|..++ +.+.....-. ....+..+. +.++
T Consensus 275 tG~~~W~~~~~--~-~~~~~~-~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~sp~v~-----------~g~l 338 (394)
T PRK11138 275 SGQIVWKREYG--S-VNDFAV-DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTAPVLY-----------NGYL 338 (394)
T ss_pred CCCEEEeecCC--C-ccCcEE-ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccCCEEE-----------CCEE
Confidence 86543322221 1 112222 2344444445899999999877 4443322111 111222222 4578
Q ss_pred EEEecCCeEEEEECCCceEEEeeecC-CCeeE-EEEecCCCEEEEEecCCcEEEEee
Q 038802 289 LSVALDGYMKVFDYGKMKVTHSMRFP-APLMS-VAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~-~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
+.++.||.+.+.|..+++.+...+.. ..+.+ ..+ .+..|++++.||.|+.++.
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 88999999999999999998887643 33332 122 2458889999999998865
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.09 E-value=1.2e-09 Score=99.40 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=115.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceE----EEEeeccCceeEEEEEccCCCEEEEEcCC---CCEEEEECCCC
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEK----HSAISSFKDVVTCSSFRPDGSLLAASDLS---GLIQVFDVKSR 125 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~ 125 (532)
....+.++|.++++|++..+....+++...... .... .-...-+++.|..+......+... ..+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 455677888999999998888877776644322 2221 122334455555555555555444 45555655543
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-cCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
. ...+-||-..+++++|+| |+.+++++..|..|++-.......+..+ .||...|..+++.+ +..|++||.|++++
T Consensus 143 ~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLR 218 (390)
T ss_pred C-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEE
Confidence 3 344557999999999999 8899999999999999887766666655 57999999999976 56699999999999
Q ss_pred EEEcccCCceeEE
Q 038802 205 LWDVRVENSKSVM 217 (532)
Q Consensus 205 iwd~~~~~~~~~~ 217 (532)
+||+++++.....
T Consensus 219 ~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 219 LWDITSGKLLDTC 231 (390)
T ss_pred EEecccCCccccc
Confidence 9999998766433
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.09 E-value=2.3e-09 Score=91.97 Aligned_cols=234 Identities=13% Similarity=0.160 Sum_probs=137.4
Q ss_pred eEEEEEccCCCEEEEEcCCCCEEEEECCCCce------------EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEE
Q 038802 96 VTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP------------LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 96 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------------~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iw 163 (532)
++.+.+..+ ..|+++..++.+..+....+.+ .+.+..|.++-.+-+.+- .++.++++..||.+.++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEEE
Confidence 555555533 3566666566555554433222 222333333222222222 45679999999999999
Q ss_pred ECCCCeEE-Eecc-CCCCceEEEEEeCCCCCEEEEEeC-----CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC-
Q 038802 164 DVAGESVV-LDLF-GHKDYVRCGDCSPVNGDMFVTGSY-----DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG- 235 (532)
Q Consensus 164 d~~~~~~~-~~~~-~~~~~v~~i~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~- 235 (532)
+.+.-..+ +.+. .|.+.. +.++.. .++++.++.- -+..+.|+++..+...... .....|.+++-+|..+
T Consensus 117 s~~~~~~~~~~i~~~~~~~a-s~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSA-SRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQH 193 (319)
T ss_pred echHHHhhhhhccccccccc-ccceee-cccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCccccc
Confidence 97642111 1111 122111 122222 3444444321 2345667766433322222 2234499999999655
Q ss_pred EEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE------
Q 038802 236 LIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT------ 308 (532)
Q Consensus 236 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------ 308 (532)
++++|+ ||.+.+||.++...+...+..|+.+++.+-|+|.. +..|++++.||.+.-||..+.-+-
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~--------p~~Lft~sedGslw~wdas~~~l~i~~~~s 265 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN--------PEHLFTCSEDGSLWHWDASTTFLSISNQAS 265 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC--------chheeEecCCCcEEEEcCCCceEEecCccc
Confidence 555555 79999999998877888889999999999999986 788999999999999998741111
Q ss_pred -----------Ee-ee----cCCCeeEE-EEecCCCEEEEEecCCcEEEEe
Q 038802 309 -----------HS-MR----FPAPLMSV-AFSPDCMTRVIGTSNGTIFAGR 342 (532)
Q Consensus 309 -----------~~-~~----~~~~v~~~-~~s~~~~~l~~g~~dg~i~iw~ 342 (532)
.. ++ .+....++ .|.--|..+++|+.-+-|++++
T Consensus 266 ~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 266 VISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00 00 01111111 2344578899999999999875
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=5.1e-08 Score=84.23 Aligned_cols=220 Identities=17% Similarity=0.078 Sum_probs=143.2
Q ss_pred eEEEEcCC-----CCeEEEEEeCCeEEEEeCCCceEEE-EeeccCceeEEEEEccC-CCEEEEEcCCCCEEEEECCCCce
Q 038802 55 NSIVFSPT-----TSHLFAATHSASLTLFSSQTLEKHS-AISSFKDVVTCSSFRPD-GSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 55 ~~i~~sp~-----~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
+.+.|.|. ..+||.|+..|...+|...+.+... ....|...|+-+.=..+ .--+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 45666663 3489999999999999988654433 33344443332221112 22455677788888888765433
Q ss_pred EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe--EEE-eccCCCCceEEEEEeCCCCCEEEEEeCCCeEE
Q 038802 128 LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES--VVL-DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 204 (532)
-.......-.+.++++++ ++.++++.++...|..|.+.... ... .....++.-.+..|+. ....+|+++.||++.
T Consensus 151 ~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCA 228 (344)
T ss_pred cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEE
Confidence 222211112378899999 99999999999999999987542 222 2233444556788888 888999999999999
Q ss_pred EEEcccCCceeE----EEecCCCcEEEEEEecCCC--EEEEE-cCCeEEEEEccCCCeeeEEcc------CCCc-ceEEE
Q 038802 205 LWDVRVENSKSV----MEVNHGKPIEDVMFLPSGG--LIATA-GGNSVKIWDLIGGGKMVYSME------SHNK-TVTSV 270 (532)
Q Consensus 205 iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~------~~~~-~i~~~ 270 (532)
|||+|....... ....|.+.+..+.|++.|. +|... +-+.+.+.|+++...+..... .|.. .|..-
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 999997543322 2235889999999998664 33333 357999999998743322221 2222 26666
Q ss_pred EEeccC
Q 038802 271 CVGRVG 276 (532)
Q Consensus 271 ~~~~~~ 276 (532)
+|+.++
T Consensus 309 ~f~~~n 314 (344)
T KOG4532|consen 309 NFNNEN 314 (344)
T ss_pred cccCCC
Confidence 676653
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.2e-07 Score=88.44 Aligned_cols=215 Identities=17% Similarity=0.153 Sum_probs=154.1
Q ss_pred ccCCCEEEEEcCCCCEEEEECCCCceEEEecC------CC-----CCEEEEE-eecCCCcEEEEEeCCCeEEEEECCCCe
Q 038802 102 RPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS------HT-----RPVRFVK-YPFLDKLHLVSGGDDGIVKFWDVAGES 169 (532)
Q Consensus 102 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------h~-----~~i~~~~-~~~~~~~~l~s~s~dg~i~iwd~~~~~ 169 (532)
+.||+.++-. ..|.|.+||.++......--+ .. .+..-+. |++.++++++..|. |...+.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4577777654 368899999876543221111 00 1111111 55568888888886 667777766555
Q ss_pred EEEeccCCCCceEEEEEeCCCCCEEEEEeCCC-eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC-CeEEE
Q 038802 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH-TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-NSVKI 247 (532)
Q Consensus 170 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d-~~i~i 247 (532)
.++ .+|...|.-..+.. +++-++.|..|| .+-++|.++++.... ...-+.|.++..+|+|+.++.+.| ..+-+
T Consensus 353 ~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~--e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 353 SIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRI--EKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEe--eCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 443 35677788888776 777899999999 899999988543322 245678999999999999999885 68999
Q ss_pred EEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC----eEEEEECCCceEEEeeecCCCeeEEEEe
Q 038802 248 WDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG----YMKVFDYGKMKVTHSMRFPAPLMSVAFS 323 (532)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~s 323 (532)
.|+.++ .....-+...+-|+.+.|+|+ +.+++-+--+| .|+++|+.+++........+.=.+-+|.
T Consensus 428 ididng-nv~~idkS~~~lItdf~~~~n---------sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD 497 (668)
T COG4946 428 IDIDNG-NVRLIDKSEYGLITDFDWHPN---------SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFD 497 (668)
T ss_pred EEecCC-CeeEecccccceeEEEEEcCC---------ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccC
Confidence 999988 544444566778999999999 67888777666 5899999998887665544444667899
Q ss_pred cCCCEEEEEe
Q 038802 324 PDCMTRVIGT 333 (532)
Q Consensus 324 ~~~~~l~~g~ 333 (532)
|||++|.--+
T Consensus 498 ~d~ryLYfLs 507 (668)
T COG4946 498 PDGRYLYFLS 507 (668)
T ss_pred CCCcEEEEEe
Confidence 9999887654
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=3.8e-07 Score=80.22 Aligned_cols=228 Identities=13% Similarity=0.139 Sum_probs=136.0
Q ss_pred EEEccCCCEEEEEcCCCCEEEEECCCC--ceEEEec---CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 038802 99 SSFRPDGSLLAASDLSGLIQVFDVKSR--TPLRRLK---SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173 (532)
Q Consensus 99 ~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 173 (532)
++.+.+|+.||+-- |..|.|-...+. ..+.+.+ .....-.-++|+| |+..|+.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 56678898888765 666776655432 2223322 2334457899999 99999999999999999997543 333
Q ss_pred ccC-------CCCceEEEEEeCCC-----CCEEEEEeCCCeEEEEEcccC---C--ceeEEEe--cCCCcEEEEEEecCC
Q 038802 174 LFG-------HKDYVRCGDCSPVN-----GDMFVTGSYDHTVKLWDVRVE---N--SKSVMEV--NHGKPIEDVMFLPSG 234 (532)
Q Consensus 174 ~~~-------~~~~v~~i~~~~~~-----~~~l~s~s~dg~i~iwd~~~~---~--~~~~~~~--~~~~~v~~i~~~~~~ 234 (532)
+.. -...|..+.|.+.. ...|++-.++|.++-|-+..+ . ....+.+ .....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 23456666676522 235666778888887776322 1 1122222 357789999999998
Q ss_pred CEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccE-EEEEecCCe------EEEEECCCce
Q 038802 235 GLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYR-ILSVALDGY------MKVFDYGKMK 306 (532)
Q Consensus 235 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-l~s~~~dg~------i~iwd~~~~~ 306 (532)
++|+.|+ ... ..+ . -.+....+++-.+-.+. ..+ .++...|+. ..+|.+-+.+
T Consensus 160 ~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~--------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~ 220 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDS--------PYYKQVTSSEDDITASSKRRGLLRIPSFK 220 (282)
T ss_pred CEEEEeccCCC------CCc---c--ccccccCceEEEEcCCC--------CcEEEccccCccccccccccceeecccee
Confidence 8888777 211 000 0 00112222222222221 111 112221211 2334433333
Q ss_pred EEEe-eecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 307 VTHS-MRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 307 ~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.... ......|..|..||||..||+...+|.|.+|++.+-..
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 3222 12457899999999999999999999999999987644
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=1.2e-07 Score=93.48 Aligned_cols=265 Identities=14% Similarity=0.056 Sum_probs=163.9
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCc--eeE-----EEEEcc--CCCEEEEEcCCCCEEEEECCCCceEEEecC
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKD--VVT-----CSSFRP--DGSLLAASDLSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~--~v~-----~~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 133 (532)
+..+++++.++.+.-+|..+|+.+........ ... .+.-.| ++..++.++.+|.+..+|.++|+.+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55788888889999999999988776543221 000 000011 355777888899999999999998887764
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce-----EEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV-----RCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
.......... .+..++.++.++.+..+|..+|+.+..+....... .+-.. .+..++.++.+|.+..+|.
T Consensus 149 ~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 149 AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEc
Confidence 3321111122 23457778889999999999999887765321111 01111 1345677788899999998
Q ss_pred ccCCceeEEEecCCC------cEEEEEEec---CCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC
Q 038802 209 RVENSKSVMEVNHGK------PIEDVMFLP---SGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279 (532)
Q Consensus 209 ~~~~~~~~~~~~~~~------~v~~i~~~~---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (532)
.+++..-........ ....+..+| ++.+++++.+|.+..+|..++ +.+..... .....+...
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~--~~~~~~~~~------ 293 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-QIVWKREY--GSVNDFAVD------ 293 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-CEEEeecC--CCccCcEEE------
Confidence 876544332221110 011111122 444555455899999999887 44433321 111122221
Q ss_pred CccccccEEEEEecCCeEEEEECCCceEEEeeec-CC-CeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF-PA-PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+..++.++.+|.+..+|..+++.+..... .. ...+..+ .+..++.++.+|.|++.|..+++..
T Consensus 294 -----~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 294 -----GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred -----CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 45788888999999999999987765431 11 1222222 2567889999999999998887654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.1e-08 Score=97.55 Aligned_cols=240 Identities=19% Similarity=0.173 Sum_probs=171.0
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecC-----------CCcEEEEEeCCCeEEEE
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFL-----------DKLHLVSGGDDGIVKFW 163 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~-----------~~~~l~s~s~dg~i~iw 163 (532)
.-.++.|+|.| +||.|+ ...|.+.|..+.+.++.+.-|...|+.+.|.|. ..-.|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678899887 777777 567999999999999999999999999999762 12357777888999999
Q ss_pred ECCCCeEEEeccCCCCceEEEEEeCCC--C-CEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCC-EEE
Q 038802 164 DVAGESVVLDLFGHKDYVRCGDCSPVN--G-DMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGG-LIA 238 (532)
Q Consensus 164 d~~~~~~~~~~~~~~~~v~~i~~~~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~-~l~ 238 (532)
|...+..+..+..|.+++..++|.+.. . .++++-....++.+|+..+++..-..... .....|+.+.| +.+ +.+
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceEEE
Confidence 999998888899999999999998742 2 56777777789999999986655444433 34566788888 444 444
Q ss_pred EEcCCeEEEEEccCC------CeeeEEccCCCc----------------c---------eEEEEEeccCCCCCccccccE
Q 038802 239 TAGGNSVKIWDLIGG------GKMVYSMESHNK----------------T---------VTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 239 ~~~d~~i~iwd~~~~------~~~~~~~~~~~~----------------~---------i~~~~~~~~~~~~~~~~~~~~ 287 (532)
.++.|.+-+-+.... ++.++.-..|.. . ...++|+|. -+-
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~---------~rn 244 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH---------WRN 244 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh---------hhc
Confidence 444777777665321 122222222221 0 011344554 333
Q ss_pred EEEEecCCeEEEEECCCceEEEeeecC-CCeeEEEEecCC--CEEEEEecCCcEEEEeecCc
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSMRFP-APLMSVAFSPDC--MTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~ 346 (532)
++-......+.++|++-..++.....+ +.+.-+.+-|++ ..|+++-.||.+.+|..+..
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 444555678999999988888887743 445566676765 56999999999999988764
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.04 E-value=2.6e-09 Score=91.65 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceE-EEEeeccCceeEEEEEccCCCEEEEEcC-----CCCEEEEEC
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEK-HSAISSFKDVVTCSSFRPDGSLLAASDL-----SGLIQVFDV 122 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~ 122 (532)
.|.++-.+-+.+-.+..++++..||.+.+++.+.... ...+..-...-.+.++...++.+.++.. -+..++|++
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence 3444333334444466799999999999998765211 1111111111222333445555555431 234566666
Q ss_pred CCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-EEeccCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 123 KSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 123 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
+..+.+..-......|++++-+|...+.+++|+.||.+-+||.++... ...+..|+.++.-+-|+|.++..|++++.||
T Consensus 167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 543322222223344999999997778888999999999999988743 3445789999999999999999999999999
Q ss_pred eEEEEEccc
Q 038802 202 TVKLWDVRV 210 (532)
Q Consensus 202 ~i~iwd~~~ 210 (532)
.+..||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999765
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=2.1e-07 Score=85.13 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=139.0
Q ss_pred CCeEEEEeCCCceEEEEeeccC--ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCc
Q 038802 72 SASLTLFSSQTLEKHSAISSFK--DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKL 149 (532)
Q Consensus 72 d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 149 (532)
+|.|..||..+|+.+.....-. ....+. ..+++..+++++.++.+..||..+|+.+..+.. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--ccc
Confidence 6889999999999988875411 122211 233566777778899999999999998887764 2222111111 455
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEec-cCCC---CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCC--
Q 038802 150 HLVSGGDDGIVKFWDVAGESVVLDL-FGHK---DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGK-- 223 (532)
Q Consensus 150 ~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-- 223 (532)
.+++++.++.+..+|..+|+.+... .... .......... .++.++.+..++.|..+|+++++..-........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 6777778899999999999998874 3221 1122233333 4678888888999999999987665555442211
Q ss_pred -c------EEEEEEecCCCEEEEEcCCe-EEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC
Q 038802 224 -P------IEDVMFLPSGGLIATAGGNS-VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG 295 (532)
Q Consensus 224 -~------v~~i~~~~~~~~l~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg 295 (532)
. +.+-....++.++++..++. +.+ |+.++ +.+.... ...+..+ .... +..++.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg-~~~w~~~--~~~~~~~-~~~~---------~~~l~~~~~~~ 222 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATG-EKLWSKP--ISGIYSL-PSVD---------GGTLYVTSSDG 222 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTT-EEEEEEC--SS-ECEC-EECC---------CTEEEEEETTT
T ss_pred cceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCC-CEEEEec--CCCccCC-ceee---------CCEEEEEeCCC
Confidence 1 12222333554455444664 555 99888 4334333 2222221 2233 45777777999
Q ss_pred eEEEEECCCceEEEe
Q 038802 296 YMKVFDYGKMKVTHS 310 (532)
Q Consensus 296 ~i~iwd~~~~~~~~~ 310 (532)
.|..||+.+++.+..
T Consensus 223 ~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 223 RLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEeE
Confidence 999999999998753
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1e-09 Score=97.79 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=124.5
Q ss_pred EeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC---CceeEEE
Q 038802 142 KYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE---NSKSVME 218 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~ 218 (532)
+|+-.-..+-++.+.+..|-+-|++++-.- .+. ..+.|.++.|.. .++++..|...|.|..+|+|.. ..-+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 555322223366777888999999887432 233 667788899987 7899999999999999999864 2345556
Q ss_pred ecCCCcEEEEEEec-CCCEEEEEc-CCeEEEEEccCCCee---eEEccCCCcceEEEEEeccCCCCCccccccEEEEEec
Q 038802 219 VNHGKPIEDVMFLP-SGGLIATAG-GNSVKIWDLIGGGKM---VYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293 (532)
Q Consensus 219 ~~~~~~v~~i~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~ 293 (532)
+-|++.|+++..-. ++.+|.+++ +|+|++||++.. ++ +.+.++|...-.-+-+.-+.. +..+++++.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~e-------eg~I~s~Gd 366 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEE-------EGSIFSVGD 366 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccc-------cceEEEccC
Confidence 67999999998777 677777777 999999999865 45 788888876555444443321 578899999
Q ss_pred CCeEEEEECCCceEEEeeecCCC
Q 038802 294 DGYMKVFDYGKMKVTHSMRFPAP 316 (532)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~ 316 (532)
|...+||.++.+.++.+++.+.+
T Consensus 367 DcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred eeEEEEEecccCceeeccCCCCc
Confidence 99999999999999999886543
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.00 E-value=1.3e-08 Score=101.97 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=135.6
Q ss_pred CCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
++..++.|+-...+..+|+.+.+..+...-..+.|.-+.. ++..+++|...|+|.+-|.++.+.++++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 3456677777777888899888777766655556777765 7789999999999999999999999999999999988
Q ss_pred EEEeCCCCCEEEEEeC---------CCeEEEEEcccCCceeEEEecCCCcEEEEEEecC--CCEEEEEcCCeEEEEEc--
Q 038802 184 GDCSPVNGDMFVTGSY---------DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS--GGLIATAGGNSVKIWDL-- 250 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~d~~i~iwd~-- 250 (532)
++. .|+.|++++. |..|+|||+|+.+...-+.+. ..-.-+.|+|. .+.+++.+.|...+-|.
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCchhhhhcccccceEEEEecccceeeccccc
Confidence 776 6789999886 446899999986544433322 22255677884 33444445899999993
Q ss_pred -cCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 251 -IGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 251 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.+...-+..+......+..++++++ ++.++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn---------~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSN---------GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCC---------CceEEEecccCcEeeec
Confidence 3332223444445556999999998 67899999999999997
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=5.5e-09 Score=95.30 Aligned_cols=161 Identities=14% Similarity=0.218 Sum_probs=112.4
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCCCc----eEEEecCCCCCEEEEEeecCCCcEEEE---EeCCCeEEEEECCC
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT----PLRRLKSHTRPVRFVKYPFLDKLHLVS---GGDDGIVKFWDVAG 167 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~ 167 (532)
....+..+++++++|++..+....++++.... ...... -...-+++.|.. +...... +++...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 34455678889999999888887777775432 222222 122223444443 2223333 44556666777665
Q ss_pred CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEE
Q 038802 168 ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKI 247 (532)
Q Consensus 168 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~i 247 (532)
+.+ ..+-+|-..++.++++| |+.+++++..|..|++-..........+..+|..-|..++.-++..++-+++|+++++
T Consensus 142 ~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL 219 (390)
T ss_pred cCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence 433 34568999999999999 9999999999999999887765566677779999999999987765444444999999
Q ss_pred EEccCCCeeeEEc
Q 038802 248 WDLIGGGKMVYSM 260 (532)
Q Consensus 248 wd~~~~~~~~~~~ 260 (532)
||+.++ +.+.++
T Consensus 220 Wd~~sg-k~L~t~ 231 (390)
T KOG3914|consen 220 WDITSG-KLLDTC 231 (390)
T ss_pred EecccC-Cccccc
Confidence 999988 544444
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=2e-06 Score=78.92 Aligned_cols=207 Identities=18% Similarity=0.189 Sum_probs=136.0
Q ss_pred EEEEcC-CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEc-cCCCEEEEEcCCCCEEEEECCCCceEEEecC
Q 038802 56 SIVFSP-TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFR-PDGSLLAASDLSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 56 ~i~~sp-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 133 (532)
++.|.+ ++.++++-...+.|+.|+..++.... +... . ...+++. +++.+++ +.. +.+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeec
Confidence 578888 55555555568899999998876543 2221 2 6667777 6655544 443 4466679988754433332
Q ss_pred -----CCCCEEEEEeecCCCcEEEEEeCC--------CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEE-EEeC
Q 038802 134 -----HTRPVRFVKYPFLDKLHLVSGGDD--------GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFV-TGSY 199 (532)
Q Consensus 134 -----h~~~i~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~ 199 (532)
.....+.+++.+ ++.+.++.... |.|..++.. ++...... .-...+.++|+| +++.|+ +-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECC-cchheeecccc
Confidence 345678999999 88877776544 668888877 55433333 345567999999 887654 6677
Q ss_pred CCeEEEEEcccCCc----eeEE-EecCC-CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 200 DHTVKLWDVRVENS----KSVM-EVNHG-KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 200 dg~i~iwd~~~~~~----~~~~-~~~~~-~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
.+.|..+++..... ...+ ..... .....+++..+|++.++.. .+.|.++|.. + +.+..+......+++++|
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEE
Confidence 88899999875433 1112 22222 2478899999998777765 7899999976 4 666666655568999999
Q ss_pred e
Q 038802 273 G 273 (532)
Q Consensus 273 ~ 273 (532)
.
T Consensus 233 g 233 (246)
T PF08450_consen 233 G 233 (246)
T ss_dssp E
T ss_pred E
Confidence 5
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-08 Score=90.02 Aligned_cols=237 Identities=16% Similarity=0.202 Sum_probs=153.7
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc-----eEEEecCCC------------CCEEEEEeec-CCCcEEEEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-----PLRRLKSHT------------RPVRFVKYPF-LDKLHLVSG 154 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~i~~~~~~~-~~~~~l~s~ 154 (532)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|.. .+...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999999999999764322 233455554 3467777754 244678888
Q ss_pred eCCCeEEEEECCCCeEEEec-cCCCCceEEEEEeCCCCCEEE-------EEe-CCCeEEEEEcccCCceeEEEecCCCcE
Q 038802 155 GDDGIVKFWDVAGESVVLDL-FGHKDYVRCGDCSPVNGDMFV-------TGS-YDHTVKLWDVRVENSKSVMEVNHGKPI 225 (532)
Q Consensus 155 s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~-------s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~v 225 (532)
+.|.+|++|.+........- ..-++.+ -+|..|.+.- -.+ .|..|.. .+..+....|...|
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~~l~lprls~hd~iiaa------~p~rvyaNaH~yhi 175 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTKELLLPRLSEHDEIIAA------KPCRVYANAHPYHI 175 (460)
T ss_pred cCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHHHhhcccccccceEEEe------ccceeccccceeEe
Confidence 89999999998754321110 0011111 1121111000 000 0111111 12233334688889
Q ss_pred EEEEEecCCCEEEEEcCCeEEEEEccCCC--eeeEEccCCCc-----ceEEEEEeccCCCCCccccccEEEEEecCCeEE
Q 038802 226 EDVMFLPSGGLIATAGGNSVKIWDLIGGG--KMVYSMESHNK-----TVTSVCVGRVGNESGEEAMQYRILSVALDGYMK 298 (532)
Q Consensus 226 ~~i~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 298 (532)
.++.|+.+...++++.|=.|.+|++.-.. -.+..+++|.- -|++..|+|.. ...+.-.+..|.|+
T Consensus 176 NSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~--------cn~fmYSsSkG~Ik 247 (460)
T COG5170 176 NSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM--------CNVFMYSSSKGEIK 247 (460)
T ss_pred eeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH--------cceEEEecCCCcEE
Confidence 99999999999999989999999986432 23334455543 58888999975 56788888899999
Q ss_pred EEECCCceEEE----ee-------e------cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 299 VFDYGKMKVTH----SM-------R------FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 299 iwd~~~~~~~~----~~-------~------~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
+-|++...+.- .+ . ....|..+.|+++|+++++-+. -+|++||.+..+.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 99998432211 11 0 1236788999999999987654 4899999987643
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=4.9e-07 Score=82.68 Aligned_cols=217 Identities=15% Similarity=0.077 Sum_probs=138.3
Q ss_pred CCCEEEEECCCCceEEEecCC--CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCC
Q 038802 114 SGLIQVFDVKSRTPLRRLKSH--TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 114 dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 191 (532)
+|+|..||..+++.+.....- .....+... + ++..+++++.++.+..||..+|+.+..+.. ...+...... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cc
Confidence 688999999999988887531 122222122 2 556688889999999999999998887764 2222111111 45
Q ss_pred CEEEEEeCCCeEEEEEcccCCceeEEEecC--C-CcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcce
Q 038802 192 DMFVTGSYDHTVKLWDVRVENSKSVMEVNH--G-KPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTV 267 (532)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~-~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i 267 (532)
..++.++.++.+..+|..+++..-...... . ...........+..++.+. ++.+..+|+.++ +.+..........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRG 155 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-S
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCC
Confidence 667777788899999998877665532211 1 1112222222366666666 899999999988 6666554433221
Q ss_pred ----------EEEEEeccCCCCCccccccEEEEEecCCe-EEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCC
Q 038802 268 ----------TSVCVGRVGNESGEEAMQYRILSVALDGY-MKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336 (532)
Q Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 336 (532)
..-....+ + .++.++.+|. +.+ |+.+++.+.... ...+... ...++..+++++.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~---------~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISD---------G-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp S--EEEETTEEEEEECCT---------T-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTT
T ss_pred CcceeeecccccceEEEC---------C-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCC
Confidence 11111111 3 6777777775 555 999999775333 3333331 457778888888999
Q ss_pred cEEEEeecCcccc
Q 038802 337 TIFAGRRKKKENV 349 (532)
Q Consensus 337 ~i~iw~~~~~~~~ 349 (532)
.|..||..+++..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999998754
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.96 E-value=1.8e-06 Score=78.50 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=147.7
Q ss_pred CeeEEEEcCCCC-eEEEEEeCC-eEEEEeCCCceEEEEeeccCcee--EEEEEccCCCEEEEEc-----CCCCEEEEECC
Q 038802 53 SINSIVFSPTTS-HLFAATHSA-SLTLFSSQTLEKHSAISSFKDVV--TCSSFRPDGSLLAASD-----LSGLIQVFDVK 123 (532)
Q Consensus 53 ~V~~i~~sp~~~-~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~g~-----~dg~i~iwd~~ 123 (532)
....++.+|+.. .++.+-.-| ...+||..+++....+....+.- -.-.|++||++|++.- ..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344688899555 444454444 67889999999888776544322 2467999999999863 35889999998
Q ss_pred -CCceEEEecCCCCCEEEEEeecCCCcEEEEEe------------------CCCeEEEEECCCCeEEEe--c--cCCCCc
Q 038802 124 -SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGG------------------DDGIVKFWDVAGESVVLD--L--FGHKDY 180 (532)
Q Consensus 124 -~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~ 180 (532)
+.+.+..+..|.-.-..+.+.| ++..|+++- -+-++.+.|..+|+.+.. + ..|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 6677888888877778888999 776666652 233466677788887766 4 337788
Q ss_pred eEEEEEeCCCCCEEEEEeCCCe-------EEEEEcccCCceeEEEe------cCCCcEEEEEEecCCCEEEEEc--CCeE
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHT-------VKLWDVRVENSKSVMEV------NHGKPIEDVMFLPSGGLIATAG--GNSV 245 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~--d~~i 245 (532)
|+.+++.+ ++..++..-+.|- +-+++... ....+.. .....+-+|++++++.++++++ .+.+
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 99999998 7776666554442 33443322 2222211 2356789999999999888777 7899
Q ss_pred EEEEccCCCeeeEEccCCCcceEEEEEecc
Q 038802 246 KIWDLIGGGKMVYSMESHNKTVTSVCVGRV 275 (532)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 275 (532)
.+||..++ ..+....- ..+..++..++
T Consensus 242 ~~~d~~tg-~~~~~~~l--~D~cGva~~~~ 268 (305)
T PF07433_consen 242 AVWDAATG-RLLGSVPL--PDACGVAPTDD 268 (305)
T ss_pred EEEECCCC-CEeecccc--CceeeeeecCC
Confidence 99998887 55554432 33455555544
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.3e-07 Score=92.13 Aligned_cols=184 Identities=17% Similarity=0.241 Sum_probs=130.6
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
.+.++|++++ +++++-|+.+|.|++++... .. .+...|... .. +|.+++|||.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 4567777775 67999999999999999763 33 333345443 33 89999999999999999998887776
Q ss_pred eccCCCCceEEEEEeCC----CCCEEEEEeCCCeEEEEEcccCC-ceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEE
Q 038802 173 DLFGHKDYVRCGDCSPV----NGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKI 247 (532)
Q Consensus 173 ~~~~~~~~v~~i~~~~~----~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~i 247 (532)
.+. ...++.+++++|. ..+.+++|+.-| +.++.-+-.. ...+......++|.++.|. |+++|-++|-.|+|
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 665 4568999999993 256899999888 7776543211 2222233668899999995 88999999999999
Q ss_pred EEccCCCeeeEEccCCCcc------eEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 248 WDLIGGGKMVYSMESHNKT------VTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
||.... +.+..++..... -..+.|.+. ..|+. |...+|+|..++
T Consensus 184 yd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~----------~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE----------DRLVI-GWGDSVKICSIK 233 (846)
T ss_pred Eecccc-ceeeccCCCCCCCCcccCCCceEecCC----------CeEEE-ecCCeEEEEEEe
Confidence 998876 445444433222 234667665 23443 445578888876
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=2.9e-08 Score=99.48 Aligned_cols=181 Identities=15% Similarity=0.115 Sum_probs=139.1
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEe
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKY 143 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 143 (532)
..++.|+-...+..+|+.+.+..+...-....|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|.++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 3455555556677778887777766655444555554 47889999999999999999999999999999999998876
Q ss_pred ecCCCcEEEEEeC---------CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc---ccC
Q 038802 144 PFLDKLHLVSGGD---------DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV---RVE 211 (532)
Q Consensus 144 ~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~---~~~ 211 (532)
.++.|++||. |.-|+|||++..+.+.-+.-+.++ .-+.|+|.-...+++++..|...+-|. .+.
T Consensus 226 ---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 226 ---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 6788999875 456899999988776666555554 457788866788999999999999994 332
Q ss_pred CceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEc
Q 038802 212 NSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDL 250 (532)
Q Consensus 212 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~ 250 (532)
..........+..+.++++++++..++.+. +|.|.+|.-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 222222324455699999999999999998 999999983
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.4e-08 Score=89.12 Aligned_cols=279 Identities=17% Similarity=0.137 Sum_probs=188.9
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC---ceEEEEeeccCceeEEEEEccCCCEEEEEcC-CCCEEEEECCC
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQT---LEKHSAISSFKDVVTCSSFRPDGSLLAASDL-SGLIQVFDVKS 124 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~ 124 (532)
-|.+.|+.+.... .+++.+++.||.++.|--.. -+.+..+..|...|.+++.+-++.++.+++. |..++++|+++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4778888877654 45899999999999997543 2334455678889999999999999999777 99999999987
Q ss_pred CceEEEecC--CCCCEEEEEeecCCC--cEEEEEeCCCeEEEEECCCCe--EEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 125 RTPLRRLKS--HTRPVRFVKYPFLDK--LHLVSGGDDGIVKFWDVAGES--VVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 125 ~~~~~~~~~--h~~~i~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
-..+.-++. -.+.+.++ .++.+. ...++.-.+|.+.++|-.... ....-.-|..+|.++.+++ .++.+++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeecc
Confidence 655433332 22222222 233122 223334467899999976543 2333356999999999999 889999999
Q ss_pred CCCeEEEEEcccC----CceeEEE----------ecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc--
Q 038802 199 YDHTVKLWDVRVE----NSKSVME----------VNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME-- 261 (532)
Q Consensus 199 ~dg~i~iwd~~~~----~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-- 261 (532)
..|.|..|..... +....+. ........++.|+|+|..+.+-+ |..|+++++.++ +.+..+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~ 242 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEV 242 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhcc
Confidence 9999999987631 1111111 12345678999999999999988 889999999876 3332221
Q ss_pred ------------------------------CCCc-ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe
Q 038802 262 ------------------------------SHNK-TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS 310 (532)
Q Consensus 262 ------------------------------~~~~-~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (532)
.|.. .-+.++|... +.+|+-++.=| |++.++.++.+++.
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes---------~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES---------GNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC---------CCEEEeeccee-EEEEEeecCeEEEE
Confidence 1111 1234455444 56777777655 89999999988887
Q ss_pred eecCCCee--------------------------EEEEecCCCEEEEEecCCcEEEE
Q 038802 311 MRFPAPLM--------------------------SVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 311 ~~~~~~v~--------------------------~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
+.-...|. .+.+.+|-..++++-....+++|
T Consensus 313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 64322211 12355666777777788888888
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.90 E-value=2.3e-06 Score=82.89 Aligned_cols=260 Identities=18% Similarity=0.137 Sum_probs=150.5
Q ss_pred cCCCCeEEEEE---------eCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 60 SPTTSHLFAAT---------HSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 60 sp~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.+|... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877743 246889999998765544333 56788899999999999886 67899999877744332
Q ss_pred ecCC-----------------CCCEEEEEeecCCCcEEEEEeCC-Ce---------------------------------
Q 038802 131 LKSH-----------------TRPVRFVKYPFLDKLHLVSGGDD-GI--------------------------------- 159 (532)
Q Consensus 131 ~~~h-----------------~~~i~~~~~~~~~~~~l~s~s~d-g~--------------------------------- 159 (532)
-... -+.-..+.|+| ++++|+....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2111 11224678999 77777765322 11
Q ss_pred --EEEEECCCCeEEE--ec---cCCCCceEEEEEeCCCCCEEEEE--eCCC---eEEEEEcccCCceeEEEecCCCcE--
Q 038802 160 --VKFWDVAGESVVL--DL---FGHKDYVRCGDCSPVNGDMFVTG--SYDH---TVKLWDVRVENSKSVMEVNHGKPI-- 225 (532)
Q Consensus 160 --i~iwd~~~~~~~~--~~---~~~~~~v~~i~~~~~~~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~~~~~~v-- 225 (532)
+.++|+.+++... .. ..-...+..+.|.+ ++..|+.. +.+. .+.++|..++.............|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 3344555444311 11 12345677888988 66633332 2222 366778877655544443333332
Q ss_pred -EEEEEe-cCCCEEEEE-c-CC--eEEEEEccCCCeeeEEccCCCcceEE-EEEeccCCCCCccccccEEEEEecC----
Q 038802 226 -EDVMFL-PSGGLIATA-G-GN--SVKIWDLIGGGKMVYSMESHNKTVTS-VCVGRVGNESGEEAMQYRILSVALD---- 294 (532)
Q Consensus 226 -~~i~~~-~~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~l~s~~~d---- 294 (532)
....+. +++..++.. . +| .|.+++...+ ....+....-.|.. +.+++++ +..++++..+
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~--------~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSGDWEVTSILGWDEDN--------NRIYFTANGDNPGE 306 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-SSS-EEEEEEEECTS--------SEEEEEESSGGTTS
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccCceeecccceEcCCC--------CEEEEEecCCCCCc
Confidence 245554 665544443 3 66 4566665444 34566655666755 5666664 4566666653
Q ss_pred CeEEEEECC-CceEEEeeecCCCe-eEEEEecCCCEEEEEec
Q 038802 295 GYMKVFDYG-KMKVTHSMRFPAPL-MSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 295 g~i~iwd~~-~~~~~~~~~~~~~v-~~~~~s~~~~~l~~g~~ 334 (532)
..|..-++. .+... .+...... ..+.|||+|++++..++
T Consensus 307 r~lY~v~~~~~~~~~-~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 307 RHLYRVSLDSGGEPK-CLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp BEEEEEETTETTEEE-ESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eEEEEEEeCCCCCeE-eccCCCCCceEEEECCCCCEEEEEEc
Confidence 367777777 55544 34333333 59999999999876554
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8e-08 Score=95.32 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=132.5
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLR 129 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 129 (532)
..+.++|++++ +++++.|+.+|.|++++.+. .. .+...|... ..+|.++++|+.||+|.|..+.+.+...
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45678888887 55899999999999999764 33 333344433 5689999999999999999998887777
Q ss_pred EecCCCCCEEEEEeecC----CCcEEEEEeCCCeEEEEECC--CCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeE
Q 038802 130 RLKSHTRPVRFVKYPFL----DKLHLVSGGDDGIVKFWDVA--GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203 (532)
Q Consensus 130 ~~~~h~~~i~~~~~~~~----~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i 203 (532)
++. ...++.+++++|+ ....+++||.-| +.++.-+ ..+.........++|.++.| .|+++|-++.+| |
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v 181 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-V 181 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-c
Confidence 665 5678999999983 256899999988 7776432 11111134556789999999 568999998887 9
Q ss_pred EEEEcccCCceeEEEecCCC-----cEEEEEEecCCCEEEEEcCCeEEEEEcc
Q 038802 204 KLWDVRVENSKSVMEVNHGK-----PIEDVMFLPSGGLIATAGGNSVKIWDLI 251 (532)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~~d~~i~iwd~~ 251 (532)
++||+.+.+.......++.. --..+.|.++. .|+.|=+.+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 99999875544444433311 12356776554 4555556788888887
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.2e-09 Score=108.53 Aligned_cols=221 Identities=16% Similarity=0.227 Sum_probs=152.5
Q ss_pred ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCC--eE
Q 038802 83 LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDG--IV 160 (532)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg--~i 160 (532)
.+..+++..|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|.++|+-+.-+. ++..+++.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchH
Confidence 344556777889999999999999999999999999999999999999999999999998887 666666554433 46
Q ss_pred EEEECCC-CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe---cCCCcEEEEEEecCCCE
Q 038802 161 KFWDVAG-ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV---NHGKPIEDVMFLPSGGL 236 (532)
Q Consensus 161 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~ 236 (532)
.+|++.+ +...+++.+ -.++.|+. ....-+.|+......+||+.++.....+.. .....-++..|+|+..+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7899864 445555543 33678876 444445555556799999998765544322 22233367889999888
Q ss_pred EEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCC
Q 038802 237 IATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAP 316 (532)
Q Consensus 237 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (532)
++--+ .+||.+.. ..++.+..... -..-.|+|.| ..++.-+ .|||+++.+.++....- .
T Consensus 1245 IlndG----vLWDvR~~-~aIh~FD~ft~-~~~G~FHP~g---------~eVIINS-----EIwD~RTF~lLh~VP~L-d 1303 (1516)
T KOG1832|consen 1245 ILNDG----VLWDVRIP-EAIHRFDQFTD-YGGGGFHPSG---------NEVIINS-----EIWDMRTFKLLHSVPSL-D 1303 (1516)
T ss_pred EeeCc----eeeeeccH-HHHhhhhhhee-cccccccCCC---------ceEEeec-----hhhhhHHHHHHhcCccc-c
Confidence 87544 68999876 55655554332 2233578874 3454443 48999998777665411 1
Q ss_pred eeEEEEecCCCEEE
Q 038802 317 LMSVAFSPDCMTRV 330 (532)
Q Consensus 317 v~~~~~s~~~~~l~ 330 (532)
-..+.|+..|..++
T Consensus 1304 qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMY 1317 (1516)
T ss_pred ceEEEeccCccchh
Confidence 13445555555544
No 317
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.3e-06 Score=83.17 Aligned_cols=211 Identities=9% Similarity=-0.015 Sum_probs=127.0
Q ss_pred CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE-EEEEeC---CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCC
Q 038802 115 GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH-LVSGGD---DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN 190 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 190 (532)
..|.+-|.+... .+.+... +....-.|+| +++. ++..+. +..|.++|+.+++...... ..+......|+| +
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-D 243 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-D 243 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-C
Confidence 356665654333 3333333 3778899999 7763 554433 3569999998887654433 455566788999 8
Q ss_pred CCEEEE-EeCC--CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC--C--eEEEEEccCCCeeeEEccCC
Q 038802 191 GDMFVT-GSYD--HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG--N--SVKIWDLIGGGKMVYSMESH 263 (532)
Q Consensus 191 ~~~l~s-~s~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~ 263 (532)
++.++. .+.+ ..|.++|+.++..... + .+........|+|||+.++..++ + .|.++|+.++.....+..+.
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~L-T-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQI-T-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEc-c-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
Confidence 876554 4333 4688888876543332 2 22222345689999987776663 3 68888887653212222221
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEecC---------CeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEec
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVALD---------GYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 334 (532)
. ...|+|+| ..++..+.. ..|.+.|+.++....... ........|+|||+.++..+.
T Consensus 322 --~--~~~~SPDG---------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 322 --N--NSSVSTYK---------NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred --c--CceECCCC---------CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEc
Confidence 1 24899995 444444332 368888988876543332 233346889999998876654
Q ss_pred C-C--cEEEEeecCc
Q 038802 335 N-G--TIFAGRRKKK 346 (532)
Q Consensus 335 d-g--~i~iw~~~~~ 346 (532)
+ | .+.+.+++..
T Consensus 388 ~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 LGNQSALGIIRLNYN 402 (419)
T ss_pred cCCcEEEEEEecCCC
Confidence 3 2 3556666544
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=7.2e-07 Score=89.37 Aligned_cols=200 Identities=15% Similarity=0.248 Sum_probs=139.5
Q ss_pred EEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCC-EEEEEeecCCCcEEEEEeCCC-----eEEEEECCCC-----
Q 038802 100 SFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRP-VRFVKYPFLDKLHLVSGGDDG-----IVKFWDVAGE----- 168 (532)
Q Consensus 100 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~----- 168 (532)
+|++.+..++.|+.+|.|.+++- +.+.++.++.+... |..+ |.-....+|++.+.|+ .+++||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999988873 34555777777766 4444 3332557888877765 4899998632
Q ss_pred -eEE--EeccC-----CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc---ccCCceeEEEecCCCcEEEEEEecCCCE-
Q 038802 169 -SVV--LDLFG-----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV---RVENSKSVMEVNHGKPIEDVMFLPSGGL- 236 (532)
Q Consensus 169 -~~~--~~~~~-----~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~- 236 (532)
.++ +.+.+ ...++.+++++. +-..+|+|-.+|.|..+.- |..............+|+.+.+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 233 12222 356788999998 8899999999999998842 2212233334456789999999998886
Q ss_pred EEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee
Q 038802 237 IATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR 312 (532)
Q Consensus 237 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (532)
+.++....|.+|.+.........+..|..+..|..+++. ...+++++ +..+.+||.........+.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~---------t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG---------TYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCC---------CccEEEec-CceEEEEcCCCcceeeeec
Confidence 555567889999998654235557788889999999876 33355554 4569999987655544443
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.8e-08 Score=95.22 Aligned_cols=323 Identities=13% Similarity=0.152 Sum_probs=185.9
Q ss_pred CCCCCCcccCccCCCCCCCCCCCCCCCCCCcccccccC-CCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce
Q 038802 6 DSQQPTTVSKNFPVKPKLKPKPRNLSQTPESKYWSSFK-PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE 84 (532)
Q Consensus 6 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~ 84 (532)
+....++..+.+|..|.++....+....+.+.++--.. |.+-....-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 13 Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 13 DSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 34445666777888777666666666677777664322 22222223345679999998888889889999999998888
Q ss_pred EEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEe--cCC--CCCEEEEEe--ecCCC------cEEE
Q 038802 85 KHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRL--KSH--TRPVRFVKY--PFLDK------LHLV 152 (532)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~h--~~~i~~~~~--~~~~~------~~l~ 152 (532)
.......|..+|..+.||++|..++++..-|.+.+|.......+... -.| ...++-++| ++ ++ ...+
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~-~~Ee~~~laKaa 171 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY-DREEKFKLAKAA 171 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC-ChHHhhhhhhhh
Confidence 88888899999999999999999999999999999987632222211 112 233444444 33 21 1233
Q ss_pred EEeCCCeEE-EEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEe
Q 038802 153 SGGDDGIVK-FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFL 231 (532)
Q Consensus 153 s~s~dg~i~-iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 231 (532)
+.+++..+- .++.+....-... .|.+ .| +|..|+.++.+|+|+..|-.. ....+...+ +. ..+-|.
T Consensus 172 VtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~-~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d--S~-vQmLf~ 238 (1416)
T KOG3617|consen 172 VTGDESALDEPFNWKESLAERSD-EKSG-------VP-KGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD--SE-VQMLFM 238 (1416)
T ss_pred ccCchhhhcccccCccchhhccc-cccC-------CC-CCcEEEEEcCCceEEEEcCCC-cEEEEEEcc--ch-HHHHHh
Confidence 444444332 3333211111111 1111 24 788888899999999887442 333333322 12 224455
Q ss_pred cCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe
Q 038802 232 PSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS 310 (532)
Q Consensus 232 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (532)
+-..-++..- +-.+.++-.... +....+..+..+..+... .+. ++++-..|.+ .......
T Consensus 239 ~~~eai~~i~e~lr~~l~~v~~~--------G~~ee~~~vk~sgk~Ggr----qGg-iA~sEssGvL------r~~eKyg 299 (1416)
T KOG3617|consen 239 GYCEAISIIIEFLRDCLIFVLAK--------GTSEERCAVKVSGKLGGR----QGG-IACSESSGVL------RKSEKYG 299 (1416)
T ss_pred cccceEEEEeeeceeeEEEecCC--------CchHHhhhhhhccccCCc----cCc-cccccccccc------cCCcchh
Confidence 4333332222 223333322211 111122222222221000 011 3444334422 1122223
Q ss_pred eecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCccccccccccccccCc
Q 038802 311 MRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENVESGIENFWSLGR 361 (532)
Q Consensus 311 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 361 (532)
+.....++|++++..+..+..|...|++.+|..-+..-........|.+..
T Consensus 300 ~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~ 350 (1416)
T KOG3617|consen 300 LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG 350 (1416)
T ss_pred hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC
Confidence 335678999999999999999999999999987665444444456777743
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.84 E-value=2.8e-06 Score=88.44 Aligned_cols=277 Identities=13% Similarity=0.176 Sum_probs=157.3
Q ss_pred CCCCCCCCCcccccccCCCccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC
Q 038802 27 PRNLSQTPESKYWSSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS 106 (532)
Q Consensus 27 ~~~~~~~~~~~~w~~~~~~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 106 (532)
+...+..+.+++|-.-. ......+.|.++.|..++..++.+...|.|.+-|.++.... ....-.+.|.+++|+||++
T Consensus 46 ~~ei~~~~kv~~~~~s~--~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 46 IFEIESVGKVRLVAESF--LPEDGDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE 122 (1265)
T ss_pred ceeeeccccccceeecc--cCcCCCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc
Confidence 34445555566664211 12223378999999999999999999999999988765432 3333467899999999999
Q ss_pred EEEEEcCCCCEEEEECCCCceEEEecC-----CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE-EEeccCCCCc
Q 038802 107 LLAASDLSGLIQVFDVKSRTPLRRLKS-----HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDLFGHKDY 180 (532)
Q Consensus 107 ~l~~g~~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 180 (532)
.++..+..+++.+-. .+..++....- ..+..-.+-|-. ..+ -+-|+. |.....+...... ......+. .
T Consensus 123 ~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keT-qfrgs~-gr~~~~~~~~~ek~~~~~~~~~-~ 197 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGR-KET-QFRGSE-GRQAARQKIEKEKALEQIEQDD-H 197 (1265)
T ss_pred EEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccc-cce-eeecch-hhhcccccccccccccchhhcc-C
Confidence 999988777776543 32332222111 112222233322 111 111111 1111111111110 01111122 2
Q ss_pred eEEEEEeCCCCCEEEEE-----eCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc----CCeEEEEEcc
Q 038802 181 VRCGDCSPVNGDMFVTG-----SYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG----GNSVKIWDLI 251 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----d~~i~iwd~~ 251 (532)
-++|.|-- +|.++++. .....|++||-. +... .......+.=.+++|-|.|.++++.. ++.|.+|.-.
T Consensus 198 ~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 198 KTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred CceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 34688987 89999883 333789999976 2222 22222333446789999999998874 4579998843
Q ss_pred CC--CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEE---EecCCeEEEEECCCce--EEEeeecCCCeeEEEEec
Q 038802 252 GG--GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILS---VALDGYMKVFDYGKMK--VTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 252 ~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~s~ 324 (532)
.- +.....+......+..++|+.+ +..|+. ......|++|-+.+.. +.+.+..+.... +.|+|
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~---------sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p 344 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSN---------SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDP 344 (1265)
T ss_pred CccccccccCCcccccchheeeecCC---------CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccC
Confidence 21 1112222233445899999988 566666 4445569999988743 333343333222 45555
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.4e-08 Score=90.02 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=149.8
Q ss_pred CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC---CeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-CCeEEEEEc
Q 038802 133 SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG---ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-DHTVKLWDV 208 (532)
Q Consensus 133 ~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~ 208 (532)
.|...|+.+... -.+++++++.||.++.|--.. -+.+..+..|...|.+++.+. ++.++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence 477788877654 678999999999999997543 234445677888999999887 8999999787 999999999
Q ss_pred ccCCceeEEEecCCCcEEEEEEecCC--CEEEEEc--CCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCCCCCccc
Q 038802 209 RVENSKSVMEVNHGKPIEDVMFLPSG--GLIATAG--GNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGNESGEEA 283 (532)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~--d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 283 (532)
.+-.....+....--...+...++.. ..++.+. ++.+.++|-.... +....-.-|..+|..+.+.+.
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa-------- 155 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA-------- 155 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc--------
Confidence 87555433333221122222223321 1444444 6899999977654 344555679999999999998
Q ss_pred cccEEEEEecCCeEEEEECCC------ceEEEeee----------cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 284 MQYRILSVALDGYMKVFDYGK------MKVTHSMR----------FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
+..+++....|.|.-|.... .++...++ ......++.|+|+|..+.+-+.|..|+++.+++++
T Consensus 156 -~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 156 -GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred -ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 57789999999999999872 22222222 34567899999999999999999999999999986
Q ss_pred cc
Q 038802 348 NV 349 (532)
Q Consensus 348 ~~ 349 (532)
-.
T Consensus 235 lv 236 (558)
T KOG0882|consen 235 LV 236 (558)
T ss_pred hh
Confidence 54
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.5e-05 Score=69.09 Aligned_cols=262 Identities=13% Similarity=0.056 Sum_probs=139.9
Q ss_pred CCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEE
Q 038802 62 TTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFV 141 (532)
Q Consensus 62 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 141 (532)
-|++++.|+..|.+++.+..+|.....+.....-=......+++.++..|+.|++.+..|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 36689999999999999999998877765533222223456789999999999999999999988888876544444444
Q ss_pred EeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC--CCceEE--EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE
Q 038802 142 KYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH--KDYVRC--GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~--i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (532)
+..| ....|+.+...|.|.--+.+.... ..+-.| ..++.+ +++ +..+..+.-||.+.-+| ..+ ..+.
T Consensus 142 ~i~~-g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~~~PiF~splcv----~~sv~i~~VdG~l~~f~-~sG--~qvw 212 (354)
T KOG4649|consen 142 VIAP-GDGSLYAAITAGAVLAVTKNPYSS-TEFWAATRFGPIFASPLCV----GSSVIITTVDGVLTSFD-ESG--RQVW 212 (354)
T ss_pred eecC-CCceEEEEeccceEEEEccCCCCc-ceehhhhcCCccccCceec----cceEEEEEeccEEEEEc-CCC--cEEE
Confidence 4555 444566666667666555544311 111111 122221 111 23344455566666555 222 2222
Q ss_pred EecCCCcEEE-EEEe-cCCCEEEEEcCC---------eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC---Cccc
Q 038802 218 EVNHGKPIED-VMFL-PSGGLIATAGGN---------SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES---GEEA 283 (532)
Q Consensus 218 ~~~~~~~v~~-i~~~-~~~~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~ 283 (532)
....+++|.. -+-+ |..+.+..+..+ .--+|...++ ....+..+|.-... ....
T Consensus 213 r~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g------------~t~~vy~~p~l~F~~h~~~~S 280 (354)
T KOG4649|consen 213 RPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG------------TTLHVYLSPKLRFDLHSPGIS 280 (354)
T ss_pred eecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC------------cEEEEEeCcccceeccCCCCc
Confidence 3333333321 0111 332333333322 2223333332 22223333311000 0001
Q ss_pred cccEEEEEecCCeEEEEEC---------CCceEEEe--eecCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 284 MQYRILSVALDGYMKVFDY---------GKMKVTHS--MRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~---------~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
...++..++.||.+.|.-. ..+++... ++.++.|.+--.--+ ..|+.|+.|..++.||+.+
T Consensus 281 ~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 281 YPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIID-GRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred chhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEEc-cEEEEEEccCeEEEEeccc
Confidence 1467778889999888733 22332211 122222221101113 4588899999999999875
No 323
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.78 E-value=5.3e-06 Score=83.94 Aligned_cols=267 Identities=11% Similarity=0.105 Sum_probs=161.1
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCc------eeE--EEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCC
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKD------VVT--CSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSH 134 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 134 (532)
+..+++++.++.|+-+|..+++....+..... .+. .+... ++..++.++.+|.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34577788889999999999988876644322 010 01111 2267888888999999999999998877643
Q ss_pred CCC-----E-EEEEeecCCCcEEEEEe---------CCCeEEEEECCCCeEEEeccCCCCc-------------------
Q 038802 135 TRP-----V-RFVKYPFLDKLHLVSGG---------DDGIVKFWDVAGESVVLDLFGHKDY------------------- 180 (532)
Q Consensus 135 ~~~-----i-~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 180 (532)
... + ....+. + ..++.++ .+|.+..+|..+++.+..+......
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 321 1 111222 2 3455554 3688999999999988776432110
Q ss_pred -e-EEEEEeCCCCCEEEEEeCCC------------------eEEEEEcccCCceeEEEecCCC-----cEEEEEEe----
Q 038802 181 -V-RCGDCSPVNGDMFVTGSYDH------------------TVKLWDVRVENSKSVMEVNHGK-----PIEDVMFL---- 231 (532)
Q Consensus 181 -v-~~i~~~~~~~~~l~s~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~-----~v~~i~~~---- 231 (532)
+ .+.++.+ .+..++.++.++ .+.-+|..+++..-.....+.. ......+.
T Consensus 217 ~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 217 TSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1 1233444 456777777665 6888899887665544432211 00111111
Q ss_pred cCCC---EEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEE-----------------
Q 038802 232 PSGG---LIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILS----------------- 290 (532)
Q Consensus 232 ~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s----------------- 290 (532)
-++. .++.++ +|.+...|..++ +.+...... ...+..+|+ .++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~~-----------~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDPG-----------LVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCCc-----------eEEEccccccccCcccccCCC
Confidence 1333 455565 899999999888 555443211 011122221 1222
Q ss_pred -EecCCeEEEEECCCceEEEeeecC---------CCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 291 -VALDGYMKVFDYGKMKVTHSMRFP---------APLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 291 -~~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
...+|.+.-.|..+++.+...... .+...-.....+..+++|+.||.|+.+|.++++..
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 234688999999999988777643 22211112235678999999999999999998766
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=89.26 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=119.7
Q ss_pred EEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCC-----ceEEEecCCCCCEEEE
Q 038802 67 FAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR-----TPLRRLKSHTRPVRFV 141 (532)
Q Consensus 67 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~i~~~ 141 (532)
++.+.+..|-+-|++++-.. .+. ..+.|.++.|...++++..|..+|.|..+|+..+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 44555677888898876433 333 4678999999998999999999999999999754 3444444 89999998
Q ss_pred EeecCCCcEEEEEeCCCeEEEEECCCCeE---EEeccCCCCceEEE--EEeCCCCCEEEEEeCCCeEEEEEcccCCceeE
Q 038802 142 KYPFLDKLHLVSGGDDGIVKFWDVAGESV---VLDLFGHKDYVRCG--DCSPVNGDMFVTGSYDHTVKLWDVRVENSKSV 216 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i--~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 216 (532)
.....++.+|++.+-+|.|++||.+.-++ +..+.+|.+.-.-+ .+.+ ....+++++.|...++|.++.+.....
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeec
Confidence 87655778899999999999999987766 88888886543332 3345 567888899999999999998766555
Q ss_pred EEec---CCCcEEEEEEe
Q 038802 217 MEVN---HGKPIEDVMFL 231 (532)
Q Consensus 217 ~~~~---~~~~v~~i~~~ 231 (532)
.... ....+.+++|.
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 5432 12234455554
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=3.2e-05 Score=67.17 Aligned_cols=143 Identities=14% Similarity=0.076 Sum_probs=97.2
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEE-E
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRF-V 141 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~ 141 (532)
..+++.|+..+.+.--|.++|+....-.- ...+-+-+.- -|++++.|...|.+++.+..+|.....+..-. .|.+ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccce
Confidence 34777888889999999999887654322 3344433332 46789999999999999999998777765322 2221 2
Q ss_pred EeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 142 KYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 142 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
...+ ++..+..|+.|++.+..|..+..++...+.......+-+..| ....|+.+...|.+.--..+.
T Consensus 100 ~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 100 QCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCC
Confidence 2344 888999999999999999999999888765444444455556 333444444556555444443
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.9e-06 Score=83.46 Aligned_cols=289 Identities=15% Similarity=0.150 Sum_probs=169.3
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee-ccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS-SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
|...|.--+++..+++++.|++.|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+..+..-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45566666777888999999999999999976654433222 23455666778889999999999999999988664321
Q ss_pred -----EEe-cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC----eEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 129 -----RRL-KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE----SVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 129 -----~~~-~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
... +.|...|++++|++ ++..+++|...|.|..-.+... ...+.+....+.|..+++. ++.+|++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 111 24788999999999 9999999999999999888762 1222333345666666665 344444433
Q ss_pred CCCeEEEEEcccCCceeEEEecCCCc-EEEEEEecC----CC-EEEEEcCCeEEEEEccCCCeeeEEccCC------Ccc
Q 038802 199 YDHTVKLWDVRVENSKSVMEVNHGKP-IEDVMFLPS----GG-LIATAGGNSVKIWDLIGGGKMVYSMESH------NKT 266 (532)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~----~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~ 266 (532)
. ...++++..++...+-....++. -...+|-|. .. .|+++- -..++|...-.+..+.+..-. ..+
T Consensus 189 ~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thqfk~ala~~p~p 265 (726)
T KOG3621|consen 189 T--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQFKDALARPPAP 265 (726)
T ss_pred h--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeeehhhhhccCCCC
Confidence 2 23455554432222211122221 223455553 22 444443 345677665443444332210 000
Q ss_pred e---EEEEEeccCCCCCc-----------cccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEE
Q 038802 267 V---TSVCVGRVGNESGE-----------EAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIG 332 (532)
Q Consensus 267 i---~~~~~~~~~~~~~~-----------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 332 (532)
+ .+.. +|+...... .....++++-+.-| |+|+|..+.+++.-......|..++. +|+-|++-
T Consensus 266 ~i~~~s~e-sp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~--~~neiFvL 341 (726)
T KOG3621|consen 266 EIPIRSLE-SPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSH--CGNEIFVL 341 (726)
T ss_pred cccCCCcC-CccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeecCCCceeEEee--cCceEEEE
Confidence 0 0000 111000000 00123455555555 88999888877766555556666554 45666677
Q ss_pred ecCCcEEEEeecCccc
Q 038802 333 TSNGTIFAGRRKKKEN 348 (532)
Q Consensus 333 ~~dg~i~iw~~~~~~~ 348 (532)
..||.+++..+.+.++
T Consensus 342 ~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 342 NLDRGLKVESVASRQR 357 (726)
T ss_pred ecCCceeEEEeehhHH
Confidence 7788888888877654
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.66 E-value=3.3e-05 Score=74.83 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=144.1
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC---C----
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS---R---- 125 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~---- 125 (532)
.|+++.|+++...|++|...|.|.||.....+... ......-....+.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999765432221 000111111122110 00111222333321 1
Q ss_pred --ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec--cC------CCCceEEEEEeC----CCC
Q 038802 126 --TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL--FG------HKDYVRCGDCSP----VNG 191 (532)
Q Consensus 126 --~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~------~~~~v~~i~~~~----~~~ 191 (532)
.+...+....++|++++.+ +-.+++.|..+|.+.|.|++....+..- .. ....++++.|.- .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334455568999999997 6778999999999999999988877652 22 345688888872 122
Q ss_pred ---CEEEEEeCCCeEEEEEccc-CCceeEE----E-ecCCCcEEEEE-EecC---------------------CCEEEEE
Q 038802 192 ---DMFVTGSYDHTVKLWDVRV-ENSKSVM----E-VNHGKPIEDVM-FLPS---------------------GGLIATA 240 (532)
Q Consensus 192 ---~~l~s~s~dg~i~iwd~~~-~~~~~~~----~-~~~~~~v~~i~-~~~~---------------------~~~l~~~ 240 (532)
-++++|+..|.+.+|.+-- ....... . ..+.++|..+. ++.+ ..+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4788999999999998752 1111111 1 14556666665 3221 1377778
Q ss_pred cCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCC-----
Q 038802 241 GGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA----- 315 (532)
Q Consensus 241 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 315 (532)
++..++++...+.....+.+ ........+++.+... ...+..|++-..+|.+++|.+...+.+.....+.
T Consensus 233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~----~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTIS----RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-----EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred cccceEEEeCCCCcccceee-ccccccceEEEEeecc----cCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 89999999988763333333 3323344455532100 0016788889999999999999999888877542
Q ss_pred CeeEEEEecCCCEEEEEecC
Q 038802 316 PLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 316 ~v~~~~~s~~~~~l~~g~~d 335 (532)
.+...+++++|+.++-.+..
T Consensus 308 ~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSS
T ss_pred cccccEECCCCCEEEEeCcc
Confidence 34556778888877655443
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.65 E-value=0.0002 Score=66.17 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=150.6
Q ss_pred eEEEEcCCCCeEEEEEe----------CCeEEEEeCCCceEEEEeeccCc-------eeEEEEEccCCCEEEEE--cCCC
Q 038802 55 NSIVFSPTTSHLFAATH----------SASLTLFSSQTLEKHSAISSFKD-------VVTCSSFRPDGSLLAAS--DLSG 115 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~g--~~dg 115 (532)
-.+..+|+++.+++++. .-.|.+||..+......+.-... ....++++.||+++++. +-..
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999998887542 34799999999887775543221 22345788899988875 3355
Q ss_pred CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECC-CCeEEEe----ccCCCCceE-EEEEeCC
Q 038802 116 LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA-GESVVLD----LFGHKDYVR-CGDCSPV 189 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~----~~~~~~~v~-~i~~~~~ 189 (532)
.|.|.|+..++.+..+... + +. ..| |..+.-+.+-|.||.+.-..+. .|+.... +....+++. .-.+..
T Consensus 119 SVtVVDl~~~kvv~ei~~P-G-C~-~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~- 193 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP-G-CW-LIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR- 193 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT-S-EE-EEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-
T ss_pred eEEEEECCCCceeeeecCC-C-EE-EEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-
Confidence 7999999999888877632 2 22 223 2244568888999999988887 4544322 222223322 233444
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCceeEEEec-----------CCCcEEEEEEecCCCEEEEE-c--------CC--eEEE
Q 038802 190 NGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-----------HGKPIEDVMFLPSGGLIATA-G--------GN--SVKI 247 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~~~-~--------d~--~i~i 247 (532)
.+..++--+++|.|+-.|+............ ..+.-.-+++++..+.|... . ++ .|-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 5556666789999999998765433222211 01233457787755444332 1 11 5888
Q ss_pred EEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEE-ecCCeEEEEECCCceEEEeeecCC
Q 038802 248 WDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV-ALDGYMKVFDYGKMKVTHSMRFPA 315 (532)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 315 (532)
+|+.+. +.+..+.. ...+.++.++.+. ..+|++. ..++.+.+||..+++.++.++.-+
T Consensus 274 ~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~--------~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 274 YDLKTH-KRVARIPL-EHPIDSIAVSQDD--------KPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EETTTT-EEEEEEEE-EEEESEEEEESSS--------S-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EECCCC-eEEEEEeC-CCccceEEEccCC--------CcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 888887 66776653 3457799999875 4456554 568999999999999999887433
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=1e-07 Score=59.14 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=36.8
Q ss_pred ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 83 LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
++++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=1.9e-05 Score=78.67 Aligned_cols=255 Identities=13% Similarity=0.064 Sum_probs=146.0
Q ss_pred EEEEEeCCeEEEEeCCCceEEEEeeccC-------------ceeE-----------------EEEEc---cCCCEEEEEc
Q 038802 66 LFAATHSASLTLFSSQTLEKHSAISSFK-------------DVVT-----------------CSSFR---PDGSLLAASD 112 (532)
Q Consensus 66 l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------------~~v~-----------------~~~~~---~~~~~l~~g~ 112 (532)
+.+|+..|.++|+-+.+++.+..+..++ ..|. .+++. .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5567778889988888877766653221 0111 11111 2677888776
Q ss_pred C-CCCEEEEECCCCceEEEec-CCCCCEEEEEee--cCCCcEEEEEe------------------CCCeEEEEECCCCeE
Q 038802 113 L-SGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYP--FLDKLHLVSGG------------------DDGIVKFWDVAGESV 170 (532)
Q Consensus 113 ~-dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~--~~~~~~l~s~s------------------~dg~i~iwd~~~~~~ 170 (532)
. ++.|-..++...++-+.+. .....+..+.|. | +..+++.++ ..+.+.+.|.++.+.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 4 4556666665544333322 122223333332 2 333333332 235577778777666
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEe----------------------------------------CCCeEEEEEccc
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGS----------------------------------------YDHTVKLWDVRV 210 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s----------------------------------------~dg~i~iwd~~~ 210 (532)
..++.-.. ....++++| ++.++++.+ .+++|.+.|.++
T Consensus 228 ~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred EEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 55543222 224456666 666665554 124577777665
Q ss_pred C---CceeEEEecCCCcEEEEEEecCCCEEEEEc--CCeEEEEEccCCCe-----------eeEEccCCCcceEEEEEec
Q 038802 211 E---NSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGK-----------MVYSMESHNKTVTSVCVGR 274 (532)
Q Consensus 211 ~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~~i~iwd~~~~~~-----------~~~~~~~~~~~i~~~~~~~ 274 (532)
. .......+.-+.....+.++|||+++++++ ++++.|+|+.+... .+.+..--.+ -...+|.+
T Consensus 306 ~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg 384 (635)
T PRK02888 306 AANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDG 384 (635)
T ss_pred cccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECC
Confidence 1 122334445667778999999999998888 78999999987532 2333332222 23456666
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCC----------ceEEEeeecCCCeeEEE------EecCCCEEEEEe
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGK----------MKVTHSMRFPAPLMSVA------FSPDCMTRVIGT 333 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~v~~~~------~s~~~~~l~~g~ 333 (532)
+ +..+.|.-.|..|..||+.+ ..++..+...-.+-.+. -.|||++|++..
T Consensus 385 ~---------G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 385 R---------GNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred C---------CCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 6 56778888899999999887 34455444222222222 257888888764
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.6e-06 Score=78.14 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=143.7
Q ss_pred ccCccccCeeEEEEcCCCC-eEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCC-CEEEEEcCCCCEEEEECC
Q 038802 46 QIPGLVSSINSIVFSPTTS-HLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDG-SLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 46 ~~~~h~~~V~~i~~sp~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~ 123 (532)
-+++|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-|. ++|++|...|.|.|||+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4588999999999999887 6788899999999999999988888887 789999998854 678889999999999997
Q ss_pred CCc-eEEEecC--CCCCEEEEEeecC-----CCcEEEEEeCCCeEEEEECCC--CeEEEec-cCCCCceEEEEEeCCCCC
Q 038802 124 SRT-PLRRLKS--HTRPVRFVKYPFL-----DKLHLVSGGDDGIVKFWDVAG--ESVVLDL-FGHKDYVRCGDCSPVNGD 192 (532)
Q Consensus 124 ~~~-~~~~~~~--h~~~i~~~~~~~~-----~~~~l~s~s~dg~i~iwd~~~--~~~~~~~-~~~~~~v~~i~~~~~~~~ 192 (532)
..+ .+..+.+ ...+|..++.-+. .+.+++..+.+ +..|++.. +...... .+..+...++.+.+..+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 543 2222221 2334444443221 34444444433 45565432 1111111 123445556666663344
Q ss_pred EEEEEeCCCe------EEE-EEcccCCceeEEEecC-CCc------EEEEEEecCCCEEEEEcC--CeEEEEEccCCCee
Q 038802 193 MFVTGSYDHT------VKL-WDVRVENSKSVMEVNH-GKP------IEDVMFLPSGGLIATAGG--NSVKIWDLIGGGKM 256 (532)
Q Consensus 193 ~l~s~s~dg~------i~i-wd~~~~~~~~~~~~~~-~~~------v~~i~~~~~~~~l~~~~d--~~i~iwd~~~~~~~ 256 (532)
.+++.-.+.+ |-. -|.+.+..+......+ ++. -..+.-.++.++++..+| +.+.+||..+. ..
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~-ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF-EV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh-he
Confidence 4444333210 111 1111222221111111 110 011222345566666663 68999999887 67
Q ss_pred eEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 257 VYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
+.++.. ..+|.+++....+. +.+|++-. |..++||..+
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~-------~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNG-------SSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeccc-CcceeecceeecCC-------cchhhhee-cceEEEEecC
Confidence 777754 36788887765431 44555554 5578887643
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=0.00025 Score=64.80 Aligned_cols=230 Identities=18% Similarity=0.176 Sum_probs=151.6
Q ss_pred eeEEEEEcc-CCCEEEEEcCCCC-EEEEECCCCceEEEecCCCCCEE--EEEeecCCCcEEEEEeC-----CCeEEEEEC
Q 038802 95 VVTCSSFRP-DGSLLAASDLSGL-IQVFDVKSRTPLRRLKSHTRPVR--FVKYPFLDKLHLVSGGD-----DGIVKFWDV 165 (532)
Q Consensus 95 ~v~~~~~~~-~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~~i~--~~~~~~~~~~~l~s~s~-----dg~i~iwd~ 165 (532)
....++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++ ++.+|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345677888 5566667766664 67899999888776654332221 356998 8998888644 488999999
Q ss_pred C-CCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC------------------CCeEEEEEcccCCceeEEEe---cCCC
Q 038802 166 A-GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY------------------DHTVKLWDVRVENSKSVMEV---NHGK 223 (532)
Q Consensus 166 ~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~~---~~~~ 223 (532)
. +.+.+..+..|.-.-..+.+.| ++..|+.+.. +..+.+.|..+++....... .|.-
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 8 6677778877766666788899 8877666532 22345555566554444333 2566
Q ss_pred cEEEEEEecCCCEEEEEc-CC-------eEEEEEccCCCeeeEEc-------cCCCcceEEEEEeccCCCCCccccccEE
Q 038802 224 PIEDVMFLPSGGLIATAG-GN-------SVKIWDLIGGGKMVYSM-------ESHNKTVTSVCVGRVGNESGEEAMQYRI 288 (532)
Q Consensus 224 ~v~~i~~~~~~~~l~~~~-d~-------~i~iwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~l 288 (532)
+|..+++.++|..++... .| -+.+++-... +..+ ..-.+.+-+|++++++ ....
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g--------~~ia 232 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDG--------RLIA 232 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCC--------CEEE
Confidence 899999999998877765 22 3555553321 2222 1234678899999885 3455
Q ss_pred EEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEE
Q 038802 289 LSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFA 340 (532)
Q Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 340 (532)
+|+-..|.+.+||..+++.+...... .+..++-.+++ +++ .+..|.+..
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~-ssG~G~~~~ 281 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLV-SSGQGQLIR 281 (305)
T ss_pred EECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEE-eCCCccEEE
Confidence 66667889999999999998876543 34556666665 444 444555433
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=2e-07 Score=57.73 Aligned_cols=39 Identities=31% Similarity=0.629 Sum_probs=36.6
Q ss_pred CeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 038802 168 ESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207 (532)
Q Consensus 168 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 207 (532)
++++.++.+|.+.|++++|+| ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 367888999999999999999 899999999999999997
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=0.00031 Score=68.62 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=80.3
Q ss_pred EEEEEeCCCCCEEEEE----eCCCe----EEEEEcccCC--ceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEc
Q 038802 182 RCGDCSPVNGDMFVTG----SYDHT----VKLWDVRVEN--SKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDL 250 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~----s~dg~----i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~ 250 (532)
.++.|+-.+++.+.+. +.+|. -.+|+....+ ...+..+.....|.+++++|+...++.|+ ||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 3667776555555543 22332 3456655433 33455567899999999999999888888 999999998
Q ss_pred cCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 251 IGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
..+ +.......-..+.++|+|+ +..+++|+..|.+.+||+.-.
T Consensus 289 ~~~---~t~~~ka~~~P~~iaWHp~---------gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRG---VTLLAKAEFIPTLIAWHPD---------GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCC---eeeeeeecccceEEEEcCC---------CcEEEEEcCCceEEEEEeecC
Confidence 765 2222234456789999999 678999999999999997643
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.56 E-value=0.00014 Score=71.52 Aligned_cols=227 Identities=12% Similarity=0.081 Sum_probs=122.0
Q ss_pred ccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE
Q 038802 91 SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV 170 (532)
Q Consensus 91 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 170 (532)
...-....+.++|+|+++++++ ||...|+.....+.... +.-...+|.+ .+ .+++-...++|.++.--+...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEec-Cc-cEEEEECCCeEEEEEcCcccc
Confidence 3445678899999999999966 88888888544333222 2234577886 44 467766688899963222222
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEc
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~ 250 (532)
...+.. ...+..+.. |.+|...+.+ .|.+||..+++...... .. +|..+.|+++|.+++..++..+.|++.
T Consensus 102 ~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 102 VKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred ceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 112221 112333322 6777766654 89999999855544443 22 489999999999999999888888775
Q ss_pred cCC----------CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEE
Q 038802 251 IGG----------GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSV 320 (532)
Q Consensus 251 ~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 320 (532)
... ...+..+..-...|.+.+|..+ .++-.+.. .++. +-.|+.......+.++.=+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-----------~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yll 238 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-----------CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLL 238 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-----------EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-----------EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEE
Confidence 321 0022222222456777888643 33333333 6666 3444443333345677888
Q ss_pred EEecCCCEEEEEecCCcEEEEeecCccc
Q 038802 321 AFSPDCMTRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 321 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.+.|....++....|+.|..+.++..+-
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 8888888999999999999998887643
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=8.1e-05 Score=68.73 Aligned_cols=262 Identities=15% Similarity=0.136 Sum_probs=155.4
Q ss_pred CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc----------CCCCEEEEECCCCceEEEecCCCC-C----
Q 038802 73 ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD----------LSGLIQVFDVKSRTPLRRLKSHTR-P---- 137 (532)
Q Consensus 73 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~h~~-~---- 137 (532)
++++++|.++++.+..+... -.-.+..+||++.+++++ ..-.|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999988877652 233466799999988753 234699999999877665432221 1
Q ss_pred --EEEEEeecCCCcEEEEE--eCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc
Q 038802 138 --VRFVKYPFLDKLHLVSG--GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213 (532)
Q Consensus 138 --i~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (532)
.....++. ++++++.. +--..|.|.|+..++.+..+... + |....|..+.-|.+-+.||.+....+.....
T Consensus 95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 12234555 55555543 23456777777777777665422 1 3444454456788889999999998874322
Q ss_pred eeEEE--e--cCCCc-EEEEEEecCC-CEEEEEcCCeEEEEEccCCCe-eeEEccCCC----------cceEEEEEeccC
Q 038802 214 KSVME--V--NHGKP-IEDVMFLPSG-GLIATAGGNSVKIWDLIGGGK-MVYSMESHN----------KTVTSVCVGRVG 276 (532)
Q Consensus 214 ~~~~~--~--~~~~~-v~~i~~~~~~-~~l~~~~d~~i~iwd~~~~~~-~~~~~~~~~----------~~i~~~~~~~~~ 276 (532)
..... . ....+ +..-++...+ .++..+-+|.|+--|+..... ....+..-. +.-.-+++++..
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 22111 1 11222 2333444444 455555599999988876531 111111100 011224444432
Q ss_pred CCCCccccccEEEEEe--cCC-------eEEEEECCCceEEEeeecCCCeeEEEEecCCC-EEEEE-ecCCcEEEEeecC
Q 038802 277 NESGEEAMQYRILSVA--LDG-------YMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCM-TRVIG-TSNGTIFAGRRKK 345 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~--~dg-------~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g-~~dg~i~iw~~~~ 345 (532)
+.+++... .+| .|.++|+.+++.+..+....++.+++++.|.+ .|++. ..+|.|.+||..+
T Consensus 250 --------~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 250 --------GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp --------TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred --------CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 22222221 111 48888999999999999888899999999876 55544 4578999999999
Q ss_pred cccc
Q 038802 346 KENV 349 (532)
Q Consensus 346 ~~~~ 349 (532)
++..
T Consensus 322 Gk~~ 325 (342)
T PF06433_consen 322 GKLV 325 (342)
T ss_dssp --EE
T ss_pred CcEE
Confidence 8655
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=2.6e-08 Score=96.15 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=138.0
Q ss_pred ceeEEEEEccC--CCEEEEEcCCCCEEEEECCCCce--EEEecCCCCCEEEEEeecCCCcEEEEEe----CCCeEEEEEC
Q 038802 94 DVVTCSSFRPD--GSLLAASDLSGLIQVFDVKSRTP--LRRLKSHTRPVRFVKYPFLDKLHLVSGG----DDGIVKFWDV 165 (532)
Q Consensus 94 ~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~~~~~~~~l~s~s----~dg~i~iwd~ 165 (532)
..+.|+++.-+ ...+++|..+|.|.+-.+....- -....+|..++++++|++.|.++|+.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 35666766553 35788999999999988754321 2344578889999999997788888774 3667999999
Q ss_pred CCC--eEE--EeccC-CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEec-CCCEEEE
Q 038802 166 AGE--SVV--LDLFG-HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SGGLIAT 239 (532)
Q Consensus 166 ~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~ 239 (532)
.++ .+. ..+.+ -.....+++|.. +.+++.+|.....+.++|+|... ..... -....+..+.++| .+.++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~-~~~~s-vnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL-DSVSS-VNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh-hhhhh-hhhhhcccceecCCCCCceec
Confidence 876 111 11222 334455788885 88999999999999999998521 11111 1234567788889 8889998
Q ss_pred EcCCeEEEEE-ccCCCeeeEEccCCC----cceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECCC
Q 038802 240 AGGNSVKIWD-LIGGGKMVYSMESHN----KTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYGK 304 (532)
Q Consensus 240 ~~d~~i~iwd-~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 304 (532)
..||.|.+|| .++-..++..+.... ..+..++|+|.. ...+++.. ..++|+.+|+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC--------cchhhhhccCcceEEEecccc
Confidence 8899999999 544434444443222 348999999985 33455544 457899999753
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.54 E-value=0.00018 Score=72.92 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=142.8
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCce--eEEEEEcc--CCCEEEEEc---------CCCCEEEEECCCCceEEE
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKDV--VTCSSFRP--DGSLLAASD---------LSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~g~---------~dg~i~iwd~~~~~~~~~ 130 (532)
..+++++.++.|+-+|.++++.+......... -..+.-+| .+..++.++ .+|.+..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 56778888999999999999988776543221 00111111 224555554 367899999999998877
Q ss_pred ecCCCC--------------------CE-EEEEeecCCCcEEEEEeCCC------------------eEEEEECCCCeEE
Q 038802 131 LKSHTR--------------------PV-RFVKYPFLDKLHLVSGGDDG------------------IVKFWDVAGESVV 171 (532)
Q Consensus 131 ~~~h~~--------------------~i-~~~~~~~~~~~~l~s~s~dg------------------~i~iwd~~~~~~~ 171 (532)
+..... .+ ....+.+ .+..++.++.++ .|.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 653211 01 1223333 456677776655 7999999999988
Q ss_pred EeccC--CCC----ceEEEEEe---CCCCC---EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEE
Q 038802 172 LDLFG--HKD----YVRCGDCS---PVNGD---MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIAT 239 (532)
Q Consensus 172 ~~~~~--~~~----~v~~i~~~---~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 239 (532)
..+.. |.. ......+. ..++. .++.++.+|.+...|.++++..-..... ...+..+| +..++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vyv~ 344 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVYLG 344 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEEEc
Confidence 87642 211 00001111 11232 6788889999999999987655443322 11123333 222221
Q ss_pred E------------------cCCeEEEEEccCCCeeeEEccCCC--------cce--EEEEEeccCCCCCccccccEEEEE
Q 038802 240 A------------------GGNSVKIWDLIGGGKMVYSMESHN--------KTV--TSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 240 ~------------------~d~~i~iwd~~~~~~~~~~~~~~~--------~~i--~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
+ .+|.+.-.|+.++ +.+.+..... ... ..+... +..++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-----------g~~v~~g 412 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLATA-----------GNLVFAG 412 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEec-----------CCeEEEE
Confidence 1 1467888888777 4444433220 011 111111 4678899
Q ss_pred ecCCeEEEEECCCceEEEeeecCCCeeE
Q 038802 292 ALDGYMKVFDYGKMKVTHSMRFPAPLMS 319 (532)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 319 (532)
+.||.|+.+|..+++.+..++....+.+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~~a 440 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGIQA 440 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCceE
Confidence 9999999999999999999887666544
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.54 E-value=0.00046 Score=65.12 Aligned_cols=282 Identities=15% Similarity=0.101 Sum_probs=137.7
Q ss_pred cccCeeEEEEcCCCCeEEEEEe-C--CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 50 LVSSINSIVFSPTTSHLFAATH-S--ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~-d--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
|..-.+.=+|.+||+.|+.++. + ..+.+.|+.+++..+...+..+......++|+++.++-...+..+.-.|+.+.+
T Consensus 34 h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 34 HRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp E---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred cceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 3334445577889987776665 4 477888999987766554432333356677888887765556688999999987
Q ss_pred eEEEecCCCCCEEEEEeec-CCCcEEEEEe----------------------CCCeEEEEECCCCeEEEeccCCCCceEE
Q 038802 127 PLRRLKSHTRPVRFVKYPF-LDKLHLVSGG----------------------DDGIVKFWDVAGESVVLDLFGHKDYVRC 183 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~-~~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 183 (532)
....+.....-+-...|.. .++..++-.- -...|.-.|+.+|+....+. ....+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 6666665666555566643 2444433221 12346666888876544443 5667788
Q ss_pred EEEeCCCCCEEEEEeC---CC-eEEEEEcccCCc--eeEEEecCCCcEEEEEEecCCCEEEEEc---C---CeEEEEEcc
Q 038802 184 GDCSPVNGDMFVTGSY---DH-TVKLWDVRVENS--KSVMEVNHGKPIEDVMFLPSGGLIATAG---G---NSVKIWDLI 251 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~---dg-~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~---d---~~i~iwd~~ 251 (532)
+.|+|.++..++-|-. |. .-+||-+++... ..+........+..=-|.|+|..+.--+ . ..|.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999977777777543 22 236676654322 2222212233444456889988654422 2 257777777
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecC----------------CeEEEEECCCceEEEeeecCC
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD----------------GYMKVFDYGKMKVTHSMRFPA 315 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 315 (532)
++.... ... ......+..+++ +.+++-=+.| --|+++++..+.......|..
T Consensus 273 t~~~~~-~~~--~p~~~H~~ss~D---------g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 273 TGERRR-LME--MPWCSHFMSSPD---------GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp T--EEE-EEE--E-SEEEEEE-TT---------SSEEEEEE-------------------EEEEEETTTTEEEEEEE---
T ss_pred CCCceE-EEe--CCceeeeEEcCC---------CCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 663321 111 112334444555 3333332322 256778888766543333321
Q ss_pred ---------Ce--eEEEEecCCCEEE-EEecCCcEEEEeec
Q 038802 316 ---------PL--MSVAFSPDCMTRV-IGTSNGTIFAGRRK 344 (532)
Q Consensus 316 ---------~v--~~~~~s~~~~~l~-~g~~dg~i~iw~~~ 344 (532)
.+ -...|+|||++++ ++...|...||-..
T Consensus 341 sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 341 SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 11 3468999998865 55567777766544
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=5.8e-08 Score=93.85 Aligned_cols=198 Identities=16% Similarity=0.227 Sum_probs=134.2
Q ss_pred cCeeEEEEcCCC--CeEEEEEeCCeEEEEeCCCce--EEEEeeccCceeEEEEEcc-CCCEEEEEc----CCCCEEEEEC
Q 038802 52 SSINSIVFSPTT--SHLFAATHSASLTLFSSQTLE--KHSAISSFKDVVTCSSFRP-DGSLLAASD----LSGLIQVFDV 122 (532)
Q Consensus 52 ~~V~~i~~sp~~--~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~g~----~dg~i~iwd~ 122 (532)
..+.|++++-+. ..+++|..+|.|.+-...... ......++....++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 356777765543 478889999999998765432 2344567788999999998 778888883 3678999999
Q ss_pred CCC--ceEE--EecC-CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEE
Q 038802 123 KSR--TPLR--RLKS-HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTG 197 (532)
Q Consensus 123 ~~~--~~~~--~~~~-h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 197 (532)
.++ .+.. .+.+ -.....+++|.. +.+.+++|.....+.++|++... .....-.+..+..+.+.|..++++++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceecc
Confidence 876 2221 1222 334456888986 88899999999999999987322 111222344567788888788888876
Q ss_pred eCCCeEEEEE-cccCCceeEEEe----cCCCcEEEEEEecCCC-EEEEEc--CCeEEEEEccC
Q 038802 198 SYDHTVKLWD-VRVENSKSVMEV----NHGKPIEDVMFLPSGG-LIATAG--GNSVKIWDLIG 252 (532)
Q Consensus 198 s~dg~i~iwd-~~~~~~~~~~~~----~~~~~v~~i~~~~~~~-~l~~~~--d~~i~iwd~~~ 252 (532)
. ||.|-+|| .+.-+....... .....+..++|.|... ++++.. .++|+.+|+..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5 99999999 433222211111 1223589999999433 445554 57999999863
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.43 E-value=0.00018 Score=70.84 Aligned_cols=220 Identities=12% Similarity=0.150 Sum_probs=113.0
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
......+.++|+|+++++ +.+|...||.....+.... +.-..++|.++++ +|+-..+++|.|+.--+......
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 335689999999998887 5678889998655444332 3345678888555 66666688899974322232223
Q ss_pred ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
++. ...+..+- .|..|...+.+ .|.+||+.+++.+..+... +|..+.|++ ++++++..+.+ .+.+++...
T Consensus 105 i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 105 IKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-H
T ss_pred EcC-CcccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEEEEEecc
Confidence 332 22344443 36666666554 8999999999999988743 389999999 89999988765 577776543
Q ss_pred C---------Cc-eeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCC-eeeEEccCCCcceEEEEEeccCCCC
Q 038802 211 E---------NS-KSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGNES 279 (532)
Q Consensus 211 ~---------~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (532)
. -. ...........|.+.+|..+ -++.+... .++. +.++. ..+..+ ..++.=+.+.+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~~i~~l---d~~~yllgy~~~---- 243 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGETGIIAHL---DKPLYLLGYLPK---- 243 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEEEEEEE----SS--EEEEEETT----
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcceEEEc---CCceEEEEEEcc----
Confidence 2 00 11111122678889999865 34444334 6665 33331 122222 334445555553
Q ss_pred CccccccEEEEEecCCeEEEEECC
Q 038802 280 GEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
...++....|+.+..+.+.
T Consensus 244 -----~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 -----ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -----TTEEEEE-TT--EEEEE--
T ss_pred -----CCEEEEEECCCCEEEEEEC
Confidence 3455566666665555443
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.0003 Score=63.30 Aligned_cols=202 Identities=14% Similarity=0.227 Sum_probs=120.4
Q ss_pred CCccCccccCeeEEEEcCCCCeEEEEE-eCCeEEEEeCCCceEEEEeeccC-ceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 44 PHQIPGLVSSINSIVFSPTTSHLFAAT-HSASLTLFSSQTLEKHSAISSFK-DVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 44 ~~~~~~h~~~V~~i~~sp~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
...+++-...+..++|+|+...|++.. ..+.|..++. +|+.+..+.-.. +..-.+++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 445677777899999999877666555 4678888886 477877775433 5678888888888877777789999998
Q ss_pred CCCCc------eEEEec-----CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC---CeEEE--ec------cCCCC
Q 038802 122 VKSRT------PLRRLK-----SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG---ESVVL--DL------FGHKD 179 (532)
Q Consensus 122 ~~~~~------~~~~~~-----~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~--~~------~~~~~ 179 (532)
+.... ....+. .++..+-.++|++ .++.|+.+-...-..+|.+.. ...+. .. .....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 84321 112221 3556789999999 666666676666666666543 11111 11 12345
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCC--------CcEEEEEEecCCCEEEEEcCCeEEEE
Q 038802 180 YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG--------KPIEDVMFLPSGGLIATAGGNSVKIW 248 (532)
Q Consensus 180 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~l~~~~d~~i~iw 248 (532)
.+.+++++|..+.+++.+..+..+..+| .+++.........+ .....|+|.++|++.+++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 6789999997788888888899999999 44555555554321 35789999999988887765555544
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.00067 Score=66.33 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 262 SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 262 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
.....+.+++++|+ ...++.|+.||.|.+||...+..... +..-.++.++|+|+|..+++|+..|.+.+|
T Consensus 257 pL~s~v~~ca~sp~---------E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSPS---------EDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCcc---------cceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 56778999999999 78999999999999999877644433 556678999999999999999999999999
Q ss_pred eecCc
Q 038802 342 RRKKK 346 (532)
Q Consensus 342 ~~~~~ 346 (532)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 99765
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.40 E-value=0.00055 Score=64.02 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=133.4
Q ss_pred CCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE----------
Q 038802 61 PTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR---------- 130 (532)
Q Consensus 61 p~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~---------- 130 (532)
..++.|+.|+.+| +++++.........+.. ...|..+...++-+.+++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee-cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3567899999988 89999833222222222 23499999999877777665 59999999865433221
Q ss_pred ----ecCCCCCEEEEE-eecCCCcEEEEEeCCCeEEEEECCCC-----eEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 131 ----LKSHTRPVRFVK-YPFLDKLHLVSGGDDGIVKFWDVAGE-----SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 131 ----~~~h~~~i~~~~-~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
.......+...+ -....+...+.+.....|.+|..... +....+. -.+.+.+++|.+ +.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~~~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGTSK 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEeCC
Confidence 011223344444 11213334444445568888877653 3444444 447788999974 677777655
Q ss_pred CeEEEEEcccCCceeEEEecC-----------CCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeee-EEccCCCcceE
Q 038802 201 HTVKLWDVRVENSKSVMEVNH-----------GKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMV-YSMESHNKTVT 268 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~ 268 (532)
+ ..+.|+.++.......... ..++..+... ++.+|++ .+..-.+.|.... ... ..+. -.....
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~~g~fv~~~G~-~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDNIGVFVNKNGE-PSRKSTIQ-WSSAPQ 232 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecceEEEEcCCCC-cCcccEEE-cCCchh
Confidence 4 8889998765554443221 1233333433 4556654 3444444443321 111 1222 123445
Q ss_pred EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC
Q 038802 269 SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP 314 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (532)
++.+.. .++++.+. +.|.||++.++++++.+..+
T Consensus 233 ~~~~~~-----------pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 233 SVAYSS-----------PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEEC-----------CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 566643 36666665 45999999999999888643
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.36 E-value=0.00016 Score=75.94 Aligned_cols=236 Identities=10% Similarity=0.070 Sum_probs=141.9
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
.+.|.++.|..++..++.+..+|.|.+-|.++... .....-...|.+++|+| ++..++..+.++++.+-+ .+..++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEe-ccccchh
Confidence 46899999999999999999999999998876543 22333567899999999 999999998888876643 2222222
Q ss_pred eccCCC-----CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEE-----cC
Q 038802 173 DLFGHK-----DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATA-----GG 242 (532)
Q Consensus 173 ~~~~~~-----~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d 242 (532)
...-+. +..-.+-|-. .... +-|+ .|.....+...... ..-.......=++|.|--||.++++. .+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGr-keTq-frgs-~gr~~~~~~~~~ek-~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGR-KETQ-FRGS-EGRQAARQKIEKEK-ALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred ccccccccccccccceecccc-ccee-eecc-hhhhcccccccccc-cccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 111111 1111233322 1111 1111 11111111111000 00000112233568999999999884 24
Q ss_pred -CeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEe---cCCeEEEEECCC---ceEEEeeecC-
Q 038802 243 -NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA---LDGYMKVFDYGK---MKVTHSMRFP- 314 (532)
Q Consensus 243 -~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~---~~~~~~~~~~- 314 (532)
..|+|||-. + ..-..-....+.-.+++|-|. +..+++.. .|+.|.+|.-+. ++..-.+..+
T Consensus 221 ~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPs---------gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPS---------GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred ceeEEEeccc-c-hhhcccCcccccccceeecCC---------CCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 689999955 3 333333344455678999997 45666653 456788988443 2222223323
Q ss_pred CCeeEEEEecCCCEEEE---EecCCcEEEEeecCc
Q 038802 315 APLMSVAFSPDCMTRVI---GTSNGTIFAGRRKKK 346 (532)
Q Consensus 315 ~~v~~~~~s~~~~~l~~---g~~dg~i~iw~~~~~ 346 (532)
.+|..++|+.++..|++ ......|.+|...+-
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 34999999999999988 444445999988764
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.0018 Score=58.41 Aligned_cols=200 Identities=11% Similarity=0.123 Sum_probs=116.7
Q ss_pred EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC-CCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 130 RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 130 ~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
.+.+-...+..+.|+|.++.++++....+.|..++.+ |+.+..+.-. .+..-.|++.. ++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 4555666799999999556677778888999999974 7777766332 34567888876 6666665556899999988
Q ss_pred ccCCc---e---eEEEe----cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccC--CCeeeE--E------ccCCCcce
Q 038802 209 RVENS---K---SVMEV----NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIG--GGKMVY--S------MESHNKTV 267 (532)
Q Consensus 209 ~~~~~---~---~~~~~----~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~--~~~~~~--~------~~~~~~~i 267 (532)
..... . ..+.. .++..+..++|+|.++.|+.+. ..-..+|.+.. ....+. . .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 43211 1 11121 2456799999999877666666 44555666543 111111 1 11234467
Q ss_pred EEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCC----------CeeEEEEecCCCEEEEEecCCc
Q 038802 268 TSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA----------PLMSVAFSPDCMTRVIGTSNGT 337 (532)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~g~~dg~ 337 (532)
.++.++|.. +.+++.+..+..|..+| .+|+++..+.... ..-.|+|.++|...+ .+.-+.
T Consensus 174 S~l~~~p~t--------~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl 243 (248)
T PF06977_consen 174 SGLSYDPRT--------GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL 243 (248)
T ss_dssp -EEEEETTT--------TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE
T ss_pred cceEEcCCC--------CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce
Confidence 889999875 67888888899999999 7777777766332 467899999985544 456666
Q ss_pred EEEE
Q 038802 338 IFAG 341 (532)
Q Consensus 338 i~iw 341 (532)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.001 Score=63.71 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=126.8
Q ss_pred CCEEEEECCCCceEEEecCC-CCCEEEEE---eecC---CCcEEEEEeC----------CCeEEEEECCCC----eEEEe
Q 038802 115 GLIQVFDVKSRTPLRRLKSH-TRPVRFVK---YPFL---DKLHLVSGGD----------DGIVKFWDVAGE----SVVLD 173 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h-~~~i~~~~---~~~~---~~~~l~s~s~----------dg~i~iwd~~~~----~~~~~ 173 (532)
+.|++.|..+.+.+..+.-. ...+.+++ +... ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35778888777766655422 22334333 3221 1567777753 289999999884 12221
Q ss_pred c--cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC-ceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEE
Q 038802 174 L--FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWD 249 (532)
Q Consensus 174 ~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd 249 (532)
+ ....++|++++-. ++. ++++. .+.|.+|++...+ ............+.++... +++++.|. -..+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 1 3357889998876 344 44443 4789999999876 4444444445566666665 55888777 56666665
Q ss_pred ccCCCeeeEEc--cCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC-----------ceEEEeeecCCC
Q 038802 250 LIGGGKMVYSM--ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK-----------MKVTHSMRFPAP 316 (532)
Q Consensus 250 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~ 316 (532)
.......+..+ ......++++.+-++ +..++.+..+|.+.++.... ......+.....
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d---------~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~ 226 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVD---------EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI 226 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-S---------SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecC---------CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence 44332322222 234556888888866 34899999999999998762 234455667778
Q ss_pred eeEE---EEec--CCC------EEEEEecCCcEEEEee
Q 038802 317 LMSV---AFSP--DCM------TRVIGTSNGTIFAGRR 343 (532)
Q Consensus 317 v~~~---~~s~--~~~------~l~~g~~dg~i~iw~~ 343 (532)
|+++ ++.| .+. .++.++.+|.|.+.-.
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 8888 5555 222 4888899999985443
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.27 E-value=0.00011 Score=76.11 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=103.9
Q ss_pred CCCEEEEE-cCCCCEEEEECCCCceEEEecCCCCC-EEEEEee----cCCCcEEEEEeCCCeEEEEECCCCe--EEEe--
Q 038802 104 DGSLLAAS-DLSGLIQVFDVKSRTPLRRLKSHTRP-VRFVKYP----FLDKLHLVSGGDDGIVKFWDVAGES--VVLD-- 173 (532)
Q Consensus 104 ~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~-- 173 (532)
+.++|+.. .....++-.|++.|+.+..+..|... |..++-. .......+.|-.+..+..||.+-.. .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34455543 34678999999999999999987654 5555421 1123456778888999999998532 2211
Q ss_pred -ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEcc
Q 038802 174 -LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLI 251 (532)
Q Consensus 174 -~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~ 251 (532)
........+|++-. ...+||+|+.+|.|++||- .+....+...+.+.+|..|..+.||+++++.++..+.+++..
T Consensus 572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred cccccCCCceEEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 11234456677655 4668999999999999994 444444444466899999999999999999999999998863
No 349
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=98.24 E-value=1.5e-05 Score=71.06 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=93.4
Q ss_pred chHHHHHHhhCCCCChhHHHHHHHHHhhchHHHHhcCCC------hHhHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 038802 411 RHKEALVSVLNGKNPENVVAVMEELVARKKLMKCVSNLD------NEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMR 484 (532)
Q Consensus 411 ~~~~al~~al~~~~~~~~~~~~~~l~~~~~l~~~~~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~il~~~ 484 (532)
.+...|..+-..++...++..|+.+.. .+++-.|+.+. .+.+..+++|+..++...+.+++++.||..+|++|
T Consensus 112 ~f~~lL~~~~~~~dy~~~~~~LkslsP-S~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vFLk~H 190 (237)
T PF04192_consen 112 EFTRLLRSASESEDYSEFLEYLKSLSP-SAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVFLKVH 190 (237)
T ss_pred HHHHHHHhhcccccHHHHHHHHHhCCh-hHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 445555555555565667777776655 67888888887 67888999999999999999999999999999999
Q ss_pred cccccccHH---HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHH
Q 038802 485 AKDIRTCDA---LKGHIRNLKRSVEEEIRIQQSLQEI-QGIISPL 525 (532)
Q Consensus 485 ~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~l~~~-~g~l~~~ 525 (532)
+..+..++. |.+.+..|.+..+++..+++.|..- .|.+..+
T Consensus 191 gd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl 235 (237)
T PF04192_consen 191 GDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFL 235 (237)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 999999888 9999999999999999888887764 6666544
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.24 E-value=0.0073 Score=60.21 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=131.8
Q ss_pred cCeeEEEEcCCCCeEEEEE-eCC----eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCC-----------
Q 038802 52 SSINSIVFSPTTSHLFAAT-HSA----SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSG----------- 115 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~-~d~----~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----------- 115 (532)
..+....+||+|+++|.+- ..| .++++|+.+++.+...-. ......+.|.+|++.|+....+.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3445688999999888763 344 699999999977653211 11223399999988776554322
Q ss_pred CEEEEECCCCce--EEEecCCCCC--EEEEEeecCCCcEEEEEe-CC---CeEEEEECCCC----eEEEeccCCCCceE-
Q 038802 116 LIQVFDVKSRTP--LRRLKSHTRP--VRFVKYPFLDKLHLVSGG-DD---GIVKFWDVAGE----SVVLDLFGHKDYVR- 182 (532)
Q Consensus 116 ~i~iwd~~~~~~--~~~~~~h~~~--i~~~~~~~~~~~~l~s~s-~d---g~i~iwd~~~~----~~~~~~~~~~~~v~- 182 (532)
.|+.|.+.+... ...+...... ...+..++ ++.+++..+ .. ..+.+.|+..+ .....+......+.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888876543 2444443333 56777888 777766533 22 35788888764 22333333333333
Q ss_pred EEEEeCCCCCEEEEEeC---CCeEEEEEcccCCc--eeEEEecCCC--cEEEEEEecCCCEEEEEc--CC--eEEEEEcc
Q 038802 183 CGDCSPVNGDMFVTGSY---DHTVKLWDVRVENS--KSVMEVNHGK--PIEDVMFLPSGGLIATAG--GN--SVKIWDLI 251 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~--~~~~~~~~~~--~v~~i~~~~~~~~l~~~~--d~--~i~iwd~~ 251 (532)
.+... ++.+++.... .+.|...++..... .......+.. .+..+.. .+.+|+... ++ .|+++++.
T Consensus 282 ~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 282 YVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 33333 3444443322 35677778776553 1223345555 3455444 444454443 44 79999988
Q ss_pred CCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEec---CCeEEEEECCCceEE
Q 038802 252 GGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL---DGYMKVFDYGKMKVT 308 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~ 308 (532)
.+.........-.+.|..+...+++ ..+.++.+. -+++..||+.+++..
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~--------~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDS--------DELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT---------SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEeeecCCcceEEeccCCCCCC--------CEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2313332222334445555544443 334444433 367888888887754
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.23 E-value=0.0045 Score=63.09 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=157.1
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccC-ceeE---E-------EEEccCCCEEEEEcCCCCEEEEECCCCceEEEe
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFK-DVVT---C-------SSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRL 131 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 131 (532)
+..+++++.++.|+-+|..+|+.+-.+.... ..+. + +++ .+..++.++.|+.+..+|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467778888999999999999887764321 1111 1 122 2346777888999999999999988776
Q ss_pred cCC--C--CCEEE-EEeecCCCcEEEEEe------CCCeEEEEECCCCeEEEeccCCCC---------------------
Q 038802 132 KSH--T--RPVRF-VKYPFLDKLHLVSGG------DDGIVKFWDVAGESVVLDLFGHKD--------------------- 179 (532)
Q Consensus 132 ~~h--~--~~i~~-~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~--------------------- 179 (532)
... . ..+++ -... ++ .+++++ .+|.|..+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 521 1 11111 1111 34 455543 268999999999988766532110
Q ss_pred ----------ce-EEEEEeCCCCCEEEEEeCC-----C-----------eEEEEEcccCCceeEEEec-CC-------Cc
Q 038802 180 ----------YV-RCGDCSPVNGDMFVTGSYD-----H-----------TVKLWDVRVENSKSVMEVN-HG-------KP 224 (532)
Q Consensus 180 ----------~v-~~i~~~~~~~~~l~s~s~d-----g-----------~i~iwd~~~~~~~~~~~~~-~~-------~~ 224 (532)
.+ ..+++.| ..++++.+... + .|.-.|+++++..-.++.. |. ..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 01 1235555 45555555422 2 5666777877665444432 21 11
Q ss_pred EEEEEEecCCC---EEEEEc-CCeEEEEEccCCCeeeEE--------c----cCCC-cce--------------------
Q 038802 225 IEDVMFLPSGG---LIATAG-GNSVKIWDLIGGGKMVYS--------M----ESHN-KTV-------------------- 267 (532)
Q Consensus 225 v~~i~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~--------~----~~~~-~~i-------------------- 267 (532)
..-+.+..+|+ .++.+. +|.+.+.|-.++ +++.. . .... .++
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~P 381 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCP 381 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCC-ceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECC
Confidence 11222324665 666777 899999998776 44311 0 0000 000
Q ss_pred --------EEEEEeccCCCCCccccccEEEEE---------------------------------ecCCeEEEEECCCce
Q 038802 268 --------TSVCVGRVGNESGEEAMQYRILSV---------------------------------ALDGYMKVFDYGKMK 306 (532)
Q Consensus 268 --------~~~~~~~~~~~~~~~~~~~~l~s~---------------------------------~~dg~i~iwd~~~~~ 306 (532)
..++++|. ..+++.. ..-|.|.-+|+.+++
T Consensus 382 g~~Gg~~W~~~A~Dp~---------~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 382 GFLGGKNWQPMAYSPK---------TGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCcCCCCCCCceECCC---------CCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 00122221 1111111 113678889999999
Q ss_pred EEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 307 VTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 307 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.....+...+...-.+.-.+..++.++.+|.++.+|.++++.+
T Consensus 453 ~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 453 IVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred eeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 8887775544333223335567888889999999999999877
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.21 E-value=0.0007 Score=64.83 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=111.1
Q ss_pred CeEEEEECCCCeEEEeccC-CCCceEEEEEeCC------CCCEEEEEeC----------CCeEEEEEcccC-----Ccee
Q 038802 158 GIVKFWDVAGESVVLDLFG-HKDYVRCGDCSPV------NGDMFVTGSY----------DHTVKLWDVRVE-----NSKS 215 (532)
Q Consensus 158 g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~------~~~~l~s~s~----------dg~i~iwd~~~~-----~~~~ 215 (532)
+.|++.|..+.+.+..+.- ....+.+++.... ...+++.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577888877776655532 2233444443221 1467777654 288999999874 3334
Q ss_pred EEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEE-ccCCCcceEEEEEeccCCCCCccccccEEEEEecC
Q 038802 216 VMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYS-MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD 294 (532)
Q Consensus 216 ~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d 294 (532)
.......++|++++-. ++ .++++.++.|.+|++......... .......+.++... +++++.|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-----------~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-----------KNYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-----------TTEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc-----------ccEEEEEEcc
Confidence 4445668899999876 44 477777899999999887412222 22223356666655 4588999888
Q ss_pred CeEEEEECC--CceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 295 GYMKVFDYG--KMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 295 g~i~iwd~~--~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
..+.++.++ ..+....-+ .+..++++.|-++++.+++++.+|.+.++..+..
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 888877443 332332222 4556889999877789999999999999999754
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0024 Score=59.66 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=130.5
Q ss_pred cCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe---------
Q 038802 103 PDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD--------- 173 (532)
Q Consensus 103 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------- 173 (532)
..++.|+.|+.+| +.+++........... +...|..+...+ +-+.+++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999888 9999983332222222 333499999988 555555554 49999999875443321
Q ss_pred -----ccCCCCceEEEE-EeCCCCCEEEEEeCCCeEEEEEcccC--Cc-eeEEEecCCCcEEEEEEecCCCEEEEEcCCe
Q 038802 174 -----LFGHKDYVRCGD-CSPVNGDMFVTGSYDHTVKLWDVRVE--NS-KSVMEVNHGKPIEDVMFLPSGGLIATAGGNS 244 (532)
Q Consensus 174 -----~~~~~~~v~~i~-~~~~~~~~l~s~s~dg~i~iwd~~~~--~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~ 244 (532)
.......+...+ .....+...++.....+|.+|..... .. .....+.....+.+++|. ++.++.+..+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence 111223344444 11213334444445568999888763 22 344455667889999998 56777777777
Q ss_pred EEEEEccCCCe-eeEEccCC----------CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE--Eee
Q 038802 245 VKIWDLIGGGK-MVYSMESH----------NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT--HSM 311 (532)
Q Consensus 245 i~iwd~~~~~~-~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~ 311 (532)
..+.|+.++.. .+...... ..++..+... + +.+|++. |..-.+.|.. |+.. ..+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~e~Ll~~--~~~g~fv~~~-G~~~r~~~i 225 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D---------NEFLLCY--DNIGVFVNKN-GEPSRKSTI 225 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C---------ceEEEEe--cceEEEEcCC-CCcCcccEE
Confidence 88999885521 12111111 1122222222 2 3445433 3334444543 3332 345
Q ss_pred ecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 312 RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 312 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
.-+..+.++++.. .++++.+.+ .|.||++.+++..
T Consensus 226 ~W~~~p~~~~~~~--pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 226 QWSSAPQSVAYSS--PYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred EcCCchhEEEEEC--CEEEEECCC-EEEEEECcCCcEE
Confidence 5556777777754 477776665 5999999998654
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.0036 Score=61.68 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=108.2
Q ss_pred EEEEcCCCCeEEEEEeC----------C-eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC
Q 038802 56 SIVFSPTTSHLFAATHS----------A-SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS 124 (532)
Q Consensus 56 ~i~~sp~~~~l~~~~~d----------~-~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 124 (532)
.++.+|.|.-+|....+ . .|.||+.. |+.+.++.-..+.+.++.|+.+..+ ++-..||.+++||+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEEL-VVVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeE-EEEEcCCEEEEEeCCC
Confidence 35566666666655443 1 59999965 6666666555589999999986554 4555799999999863
Q ss_pred Cc------eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe-EEEec---cCCCC------ceEE-EEEe
Q 038802 125 RT------PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES-VVLDL---FGHKD------YVRC-GDCS 187 (532)
Q Consensus 125 ~~------~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~---~~~~~------~v~~-i~~~ 187 (532)
.. .+....-....+....+.. +| ++.-..++.+.+.+-.... ....+ ..... .... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYK-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCC-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 22 1111111122222223322 33 3333344555444322211 11111 11000 0000 1233
Q ss_pred CCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCC-Cc
Q 038802 188 PVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESH-NK 265 (532)
Q Consensus 188 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~ 265 (532)
. +....+....++.+.+.+-..... ....+++..+++||+|+++|.-. +|.+.+.+..-. +....+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~-----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ-----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc-----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCC
Confidence 3 344444445555566444322111 23456899999999999999888 688888875433 344444332 23
Q ss_pred ceEEEEEec
Q 038802 266 TVTSVCVGR 274 (532)
Q Consensus 266 ~i~~~~~~~ 274 (532)
....+.|..
T Consensus 261 ~p~~~~WCG 269 (410)
T PF04841_consen 261 PPKQMAWCG 269 (410)
T ss_pred CCcEEEEEC
Confidence 344555543
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0074 Score=59.07 Aligned_cols=261 Identities=18% Similarity=0.157 Sum_probs=163.2
Q ss_pred EEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc-CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEE
Q 038802 75 LTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD-LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153 (532)
Q Consensus 75 v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 153 (532)
+.+++..+......+..+. ....+...+++..+.... ....+...+................-..++.++...+..+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5566655555544444333 456677888885555433 22245555554222222122111334566777734446666
Q ss_pred EeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC---CCeEEEEEcccCCceeEEEecCCCcEEEEEE
Q 038802 154 GGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY---DHTVKLWDVRVENSKSVMEVNHGKPIEDVMF 230 (532)
Q Consensus 154 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 230 (532)
...++.|.+.|..+.........-. ....++++| ++..+..+.. ++++.+.|..+.+...... ....+ ..+++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~ 167 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAV 167 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEE
Confidence 6667999999988877776654333 455789999 6655555444 6889999888765555533 22234 88999
Q ss_pred ecCCCEEEEEc--CCeEEEEEccCCCeeeE-E---ccCCCcceEEEEEeccCCCCCccccccEEEEEecC--CeEEEEEC
Q 038802 231 LPSGGLIATAG--GNSVKIWDLIGGGKMVY-S---MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD--GYMKVFDY 302 (532)
Q Consensus 231 ~~~~~~l~~~~--d~~i~iwd~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~i~iwd~ 302 (532)
+|+|..+..+. ++.+.+.|.... .... . ...-...-..+.+++++ ....++...+ +.+...|.
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g--------~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDG--------NRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCC--------CEEEEEeccCCCceEEEEeC
Confidence 99999666665 789999997654 3331 1 01112234578888885 2333433333 69999999
Q ss_pred CCceEEEe-eecCC-CeeEEEEecCCCEEEEEecC-CcEEEEeecCcccc
Q 038802 303 GKMKVTHS-MRFPA-PLMSVAFSPDCMTRVIGTSN-GTIFAGRRKKKENV 349 (532)
Q Consensus 303 ~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~g~~d-g~i~iw~~~~~~~~ 349 (532)
.++..... ..... ....+..+|+|.++.+.... +.+.+-+..+....
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 99887766 32222 46778999999999888544 78998888876544
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00024 Score=69.68 Aligned_cols=190 Identities=21% Similarity=0.227 Sum_probs=118.0
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEe---C-CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEE-cCCCC--E
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATH---S-ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAAS-DLSGL--I 117 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~---d-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~--i 117 (532)
..+..-...+..-+|+|++..++..+. . ..+.++++.+++...... ..+.-..-+|+|||+.|+.+ ..||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444555667778899999987665532 2 468999998876655543 23344556899999988854 45664 6
Q ss_pred EEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEe-CCC--eEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEE
Q 038802 118 QVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGG-DDG--IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 194 (532)
.++|+.++. ...+....+.-+.=.|+| ++..++-.+ ..| .|.+.|.+.+...+ +......-..-.|+| +++++
T Consensus 265 y~~dl~~~~-~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~Sp-dG~~i 340 (425)
T COG0823 265 YLMDLDGKN-LPRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSP-DGDKI 340 (425)
T ss_pred EEEcCCCCc-ceecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCC-CCCEE
Confidence 667777666 333443333334567899 666666554 444 46677777665432 222222222677899 88888
Q ss_pred EEEeCC-Ce--EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc
Q 038802 195 VTGSYD-HT--VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 195 ~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 241 (532)
+..+.. |. |.+.|+.++.. ............-.+.+++..+...+
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEec
Confidence 877653 44 66666665443 22233444555667888888777665
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.007 Score=59.22 Aligned_cols=259 Identities=17% Similarity=0.144 Sum_probs=164.4
Q ss_pred CeeEEEEcCCCCeEEEEEe-CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE-EEcCCCCEEEEECCCCceEEE
Q 038802 53 SINSIVFSPTTSHLFAATH-SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA-ASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~ 130 (532)
....+.+.|++..+.+... ...+...+................-..+++++.+..++ +...++.|.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4567788888865554433 23455555542222221211113445778888887554 445568999999887776666
Q ss_pred ecCCCCCEEEEEeecCCCcEEEEEeC---CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEE-eCCCeEEEE
Q 038802 131 LKSHTRPVRFVKYPFLDKLHLVSGGD---DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTG-SYDHTVKLW 206 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i~iw 206 (532)
...-. ....+++++ ++..+..+.. ++++.+.|-.+.+.......-..+ ..+++.| ++..++.. ..++.|.+.
T Consensus 112 ~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 112 IPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred eeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEE
Confidence 54322 556788998 6655555444 789999999999888875544444 7899999 77755544 478899999
Q ss_pred EcccCCceeEEE----ecCCCcEEEEEEecCCCEEEEEc--C--CeEEEEEccCCCeeeEEccCCCc-ceEEEEEeccCC
Q 038802 207 DVRVENSKSVME----VNHGKPIEDVMFLPSGGLIATAG--G--NSVKIWDLIGGGKMVYSMESHNK-TVTSVCVGRVGN 277 (532)
Q Consensus 207 d~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~--d--~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~ 277 (532)
|........ -. ..-...-..+.++|+|..+.... + +.+...|..++ ........-.. ....+..+|++
T Consensus 188 ~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g- 264 (381)
T COG3391 188 DTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAG- 264 (381)
T ss_pred eCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCC-
Confidence 976533221 11 22333446789999999666655 3 48888888776 33333111111 45678889984
Q ss_pred CCCccccccEEEEE-ecCCeEEEEECCCceEEEeeecC----CCeeEEEEecCC
Q 038802 278 ESGEEAMQYRILSV-ALDGYMKVFDYGKMKVTHSMRFP----APLMSVAFSPDC 326 (532)
Q Consensus 278 ~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~~s~~~ 326 (532)
..+.+. +..+.+.+.|..+......+... ..+..+++.+..
T Consensus 265 --------~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 265 --------KAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred --------CEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 445554 45689999999998888776532 236666666543
No 358
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.00084 Score=67.31 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=89.7
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--------------------------------------
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-------------------------------------- 241 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------------------------------------- 241 (532)
.+.+.+.|..+.+.... +.-......+.++|+|+++++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 45566777765333222 22233445667777777776653
Q ss_pred ---CCeEEEEEccC----CCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCce--------
Q 038802 242 ---GNSVKIWDLIG----GGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMK-------- 306 (532)
Q Consensus 242 ---d~~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 306 (532)
++.|.+.|..+ +...+..+. -......+.++|+| ...++++..+.++.|+|+.+.+
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDG--------kylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDG--------KYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCC--------CEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 13466666655 223333332 33456788999996 4556666779999999998855
Q ss_pred ----EEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 307 ----VTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 307 ----~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
++............+|.++|....+-.-|..|..|++.+.
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence 3445555556677899999998888889999999999873
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.05 E-value=0.0028 Score=61.48 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=130.1
Q ss_pred ccCCCEEEEEc---------CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 102 RPDGSLLAASD---------LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 102 ~~~~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
|||+++++... ..+.+.+||+.+++...... ....+....|+| +++.++... ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-Cccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57777777632 24679999999876544333 367788999999 888887775 5789999988775543
Q ss_pred eccCC-----------------CCceEEEEEeCCCCCEEEEEeCCC----------------------------------
Q 038802 173 DLFGH-----------------KDYVRCGDCSPVNGDMFVTGSYDH---------------------------------- 201 (532)
Q Consensus 173 ~~~~~-----------------~~~v~~i~~~~~~~~~l~s~s~dg---------------------------------- 201 (532)
..... -+.-.++-|+| +++.|+....|.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred eccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 22211 11224678999 888877654331
Q ss_pred --eEEEEEcccCCceeEEEe----cCCCcEEEEEEecCCC-EEEEEc--C-C--eEEEEEccCCCeeeEEccCCCcce--
Q 038802 202 --TVKLWDVRVENSKSVMEV----NHGKPIEDVMFLPSGG-LIATAG--G-N--SVKIWDLIGGGKMVYSMESHNKTV-- 267 (532)
Q Consensus 202 --~i~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~-~l~~~~--d-~--~i~iwd~~~~~~~~~~~~~~~~~i-- 267 (532)
.+.++|+.+++....... .....+..+.|.+++. +++.-. + + .+.++|..++.............|
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 133445444333211111 2345678899999988 444333 2 2 577778766533222222222222
Q ss_pred -EEEEEe-ccCCCCCccccccEEEEEecCCe--EEEEECCCceEEEeeecCCCeeE-EEEecCCCEEE-EEecC--CcEE
Q 038802 268 -TSVCVG-RVGNESGEEAMQYRILSVALDGY--MKVFDYGKMKVTHSMRFPAPLMS-VAFSPDCMTRV-IGTSN--GTIF 339 (532)
Q Consensus 268 -~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~-~g~~d--g~i~ 339 (532)
....+. +++ ..++.....||. |.+++...+.........-.|.. +.++++++.++ ++..+ +.-.
T Consensus 237 ~~~~~~~~~~~--------~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 237 YDPPHFLGPDG--------NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSEEEE-TTTS--------SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred ecccccccCCC--------CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 244444 554 566666667775 55567777765544345556755 67888877654 55442 3444
Q ss_pred EEeecC
Q 038802 340 AGRRKK 345 (532)
Q Consensus 340 iw~~~~ 345 (532)
+|.+.-
T Consensus 309 lY~v~~ 314 (353)
T PF00930_consen 309 LYRVSL 314 (353)
T ss_dssp EEEEET
T ss_pred EEEEEe
Confidence 444433
No 360
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.011 Score=56.19 Aligned_cols=245 Identities=15% Similarity=0.081 Sum_probs=121.0
Q ss_pred eCCCceEEEEeeccCceeEEE-----EEccCCCEEEEE-cCCC--CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcE
Q 038802 79 SSQTLEKHSAISSFKDVVTCS-----SFRPDGSLLAAS-DLSG--LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLH 150 (532)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~g-~~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 150 (532)
|..+|..+..+.........+ +|.+||+.|+.+ ..|| .+.+.|+.+++..+.-.+..........+| +.+.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~ 94 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRA 94 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCe
Confidence 667787777776544433333 567788666544 4454 577778888876655443222222355667 5666
Q ss_pred EEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC-CCCCEEEEEeC----------------------CCeEEEEE
Q 038802 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP-VNGDMFVTGSY----------------------DHTVKLWD 207 (532)
Q Consensus 151 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~s~----------------------dg~i~iwd 207 (532)
++-...+..|+-.|+++.+....+....+.+-...|.. .++..++-.-. ...|...|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 66666667899999999887666666666666666653 24444332211 12355556
Q ss_pred cccCCceeEEEecCCCcEEEEEEecCCC-EEEEEcCC---e--EEEEEccCCCeeeEEccCCC--cceEEEEEeccCCCC
Q 038802 208 VRVENSKSVMEVNHGKPIEDVMFLPSGG-LIATAGGN---S--VKIWDLIGGGKMVYSMESHN--KTVTSVCVGRVGNES 279 (532)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~d~---~--i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~ 279 (532)
+.+++...++ ....-+..+.|+|... +|+-|..| . -+||-++..+.....+..+. ..+.-=-|.|+|
T Consensus 175 l~tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG--- 249 (386)
T PF14583_consen 175 LKTGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG--- 249 (386)
T ss_dssp TTT--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS---
T ss_pred CCCCceeEEE--ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC---
Confidence 6665443333 3456678899999554 55555433 2 48898876665555554443 234555788886
Q ss_pred CccccccEEEEE----ecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC
Q 038802 280 GEEAMQYRILSV----ALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 280 ~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
..+.+.+ +.+..|.-+|+.+++.......+ ....+..++||++++-=+.|
T Consensus 250 -----~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 -----STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -----S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred -----CEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 2333322 22446778888887765444443 44566677899887754544
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00015 Score=71.85 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=99.9
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV 171 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 171 (532)
...|.--+++..+++++.|+.-|.+++|+-..+.....-. +..+.+..+..++ +..+++.|+..|.|.++-++.+.+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 3445555667788999999999999999977665433222 3445566666777 8888999999999999988764321
Q ss_pred -----Eec-cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC---ceeEEEecCCCcEEEEEEecCCCEEEE
Q 038802 172 -----LDL-FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN---SKSVMEVNHGKPIEDVMFLPSGGLIAT 239 (532)
Q Consensus 172 -----~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~ 239 (532)
... ..|...|+|++|++ ++..+++|...|+|..-.+.... ..........+.|-.+.+. ++.+|++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred cceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 111 23788999999999 99999999999999988877610 1111112345677777665 3344443
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.0059 Score=60.19 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=104.3
Q ss_pred CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc--CCCCce-----EEEEEeC
Q 038802 116 LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF--GHKDYV-----RCGDCSP 188 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v-----~~i~~~~ 188 (532)
.|.||+.. |+.+..+.-..+.|.++.|+. ...|++...||.+++||+.... ...+. .....| ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 37788754 566666554448899999985 4567788899999999987433 11111 111122 1122221
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCce-eEE-Ee------cCCC-cEEE-EEEecCCCEEEEEc-CCeEEEEEccCCCeee
Q 038802 189 VNGDMFVTGSYDHTVKLWDVRVENSK-SVM-EV------NHGK-PIED-VMFLPSGGLIATAG-GNSVKIWDLIGGGKMV 257 (532)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~-~~------~~~~-~v~~-i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~ 257 (532)
+|-.++ ..++.+.+.+--..... ... .. .+.. .... ..++.+....+... ++.+.+.+-...
T Consensus 138 -~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---- 210 (410)
T PF04841_consen 138 -NGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---- 210 (410)
T ss_pred -CCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----
Confidence 332222 33444444332211100 000 00 0000 1111 22334444433333 556664442221
Q ss_pred EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecC--CCeeEEEEecCCCE
Q 038802 258 YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP--APLMSVAFSPDCMT 328 (532)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~ 328 (532)
..+. ..+++..+++||+ +.+++.-..+|.+.+.+..-.+....+... .....+.|+-++..
T Consensus 211 ~~i~-~~~~i~~iavSpn---------g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 211 KQID-SDGPIIKIAVSPN---------GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred cccc-CCCCeEEEEECCC---------CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 1122 3468999999999 678888899999999987766666666644 67788888876433
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.8e-05 Score=74.88 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=77.8
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeE-EEEEccCCCEEEEEcCCCCEEEEECCCCceEE
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVT-CSSFRPDGSLLAASDLSGLIQVFDVKSRTPLR 129 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 129 (532)
...|.-+.|+|.-..+|.++.+|.|.++.+. .+.+.++..|+..++ +++|.|||+.||+|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4467889999999999999999999999887 777888887777777 99999999999999999999999999987776
Q ss_pred Eec-CCCCCEEEEEee
Q 038802 130 RLK-SHTRPVRFVKYP 144 (532)
Q Consensus 130 ~~~-~h~~~i~~~~~~ 144 (532)
... .-...|.++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 532 234556666664
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.95 E-value=0.025 Score=56.39 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=129.3
Q ss_pred eeEEEEEccCCCEEEEE-cCCC----CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-----------CC
Q 038802 95 VVTCSSFRPDGSLLAAS-DLSG----LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-----------DG 158 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g-~~dg----~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-----------dg 158 (532)
.+....++|||+++|.+ +..| .++++|+.+++.+...-.... ...+.|.+ ++..|+.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34467899999999865 3334 599999999977653211111 12389998 6555554432 23
Q ss_pred eEEEEECCCCeE--EEeccCCCCc--eEEEEEeCCCCCEEEEEeCC----CeEEEEEcccC---CceeEEEecCCCcEEE
Q 038802 159 IVKFWDVAGESV--VLDLFGHKDY--VRCGDCSPVNGDMFVTGSYD----HTVKLWDVRVE---NSKSVMEVNHGKPIED 227 (532)
Q Consensus 159 ~i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~~l~s~s~d----g~i~iwd~~~~---~~~~~~~~~~~~~v~~ 227 (532)
.|+.|.+.+... ...+...... ...+..++ ++++++..+.. ..+.+.|+... .............+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 478888876532 2333332222 55778888 88877654432 34777787764 1222222233334443
Q ss_pred EEEecCCCEEEEEc----CCeEEEEEccCCCe--eeEEccCCCc--ceEEEEEeccCCCCCccccccEEEEEecCC--eE
Q 038802 228 VMFLPSGGLIATAG----GNSVKIWDLIGGGK--MVYSMESHNK--TVTSVCVGRVGNESGEEAMQYRILSVALDG--YM 297 (532)
Q Consensus 228 i~~~~~~~~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i 297 (532)
..-+.++.+++... .+.|.-.++..... ....+..+.. .+..+.... +.+++....++ .|
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~----------~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK----------DYLVLSYRENGSSRL 351 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET----------TEEEEEEEETTEEEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC----------CEEEEEEEECCccEE
Confidence 33333555555443 25677778776532 1223444444 455555543 34555555555 48
Q ss_pred EEEECCCceEEEeeec--CCCeeEEEEecCCCEEEE-Ee---cCCcEEEEeecCcccc
Q 038802 298 KVFDYGKMKVTHSMRF--PAPLMSVAFSPDCMTRVI-GT---SNGTIFAGRRKKKENV 349 (532)
Q Consensus 298 ~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~-g~---~dg~i~iw~~~~~~~~ 349 (532)
+++++..+........ .+.|..+...+++..+.. .+ .-+.++.||+.+++..
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 8999984444444443 234556655565554432 22 2356888888777543
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.015 Score=59.34 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=90.3
Q ss_pred CeEEEEEeCCeEEEEeCCCceEEEEeeccCc----eeEEEEEccCCCEEEEEc------CCCCEEEEECCCCceEEEecC
Q 038802 64 SHLFAATHSASLTLFSSQTLEKHSAISSFKD----VVTCSSFRPDGSLLAASD------LSGLIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~ 133 (532)
..+++++.++.+.-+|..+|+.+........ .+++--.-.++ .++++. .+|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 3577788899999999999998876543110 11111011144 445443 268899999999988776542
Q ss_pred CCC-------------------------------CEE-EEEeecCCCcEEEEEeCC-----C-----------eEEEEEC
Q 038802 134 HTR-------------------------------PVR-FVKYPFLDKLHLVSGGDD-----G-----------IVKFWDV 165 (532)
Q Consensus 134 h~~-------------------------------~i~-~~~~~~~~~~~l~s~s~d-----g-----------~i~iwd~ 165 (532)
-.. .++ .+.+.+ ...+++.+..+ + .|.-.|+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 110 111 235555 45555555421 2 6777899
Q ss_pred CCCeEEEeccCCCCceE---------EEEEeCCCCC---EEEEEeCCCeEEEEEcccCCce
Q 038802 166 AGESVVLDLFGHKDYVR---------CGDCSPVNGD---MFVTGSYDHTVKLWDVRVENSK 214 (532)
Q Consensus 166 ~~~~~~~~~~~~~~~v~---------~i~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~ 214 (532)
++|+....++.....+. -+.+.. ++. .++.++.+|.+.+.|-++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 99998777654222111 122222 554 7889999999999999887653
No 366
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0021 Score=62.55 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=115.9
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee--c------cCceeEEEEEcc-----CC---CEEEEE
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS--S------FKDVVTCSSFRP-----DG---SLLAAS 111 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~g 111 (532)
....++|++++.|.-| ++|+|..+|.+.|.|++....+..-. . ....|+++.|+- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3457999999998555 89999999999999998877766532 2 234788888873 33 478899
Q ss_pred cCCCCEEEEECC--C-Cc----eEEEecCCCCCEEEEE-eecC-------------------CCcEEEEEeCCCeEEEEE
Q 038802 112 DLSGLIQVFDVK--S-RT----PLRRLKSHTRPVRFVK-YPFL-------------------DKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 112 ~~dg~i~iwd~~--~-~~----~~~~~~~h~~~i~~~~-~~~~-------------------~~~~l~s~s~dg~i~iwd 164 (532)
+..|.+.+|.+. . +. .......+.++|..+. |+.. .-..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 21 1122224566666555 3221 011244444578899999
Q ss_pred CCCCeEEEeccCCCCceEEEEEeC----CCCCEEEEEeCCCeEEEEEcccCCceeEEEecC---CCcEEEEEEecCCCEE
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSP----VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNH---GKPIEDVMFLPSGGLI 237 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l 237 (532)
..+.+..+......-....+.+.+ ..+..|++-..+|.|++|.+-.-+......... ...+....++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 988887766653322333444421 146788888999999999998755555544421 2234566778999988
Q ss_pred EEEcCCeEEEEEcc
Q 038802 238 ATAGGNSVKIWDLI 251 (532)
Q Consensus 238 ~~~~d~~i~iwd~~ 251 (532)
+..+...+.++.+-
T Consensus 322 ~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 322 YWTGPSEIQLFSVW 335 (395)
T ss_dssp EE-SSSEEEEEEEE
T ss_pred EEeCcccEEEEEEE
Confidence 88886665555543
No 367
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.0001 Score=74.20 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=87.9
Q ss_pred EEEEEccCCCEEEEEc----CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 97 TCSSFRPDGSLLAASD----LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~----~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
+-..|+|...++|+++ ..|.|.||- ++|++.+... ..-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence 4457899888888775 357888885 5565443322 122356799999 88889999999999999988877766
Q ss_pred eccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 173 DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 173 ~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
....|..+|..+.|++ +|..++++..-|.+.+|....
T Consensus 96 v~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 6778999999999999 999999999999999998763
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.83 E-value=0.0026 Score=66.37 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=114.6
Q ss_pred eCCeEEEEeCCCceEEEEeeccCce-eEEEEEccC-------CCEEEEEcCCCCEEEEECCCC--ceEEE-ec--CCCCC
Q 038802 71 HSASLTLFSSQTLEKHSAISSFKDV-VTCSSFRPD-------GSLLAASDLSGLIQVFDVKSR--TPLRR-LK--SHTRP 137 (532)
Q Consensus 71 ~d~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~g~~dg~i~iwd~~~~--~~~~~-~~--~h~~~ 137 (532)
....|+-.|++.|+.+..+..|.+. |..+ .|+ +..-+.|-.+..+..||.+-. +++.. .. .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4578888999999999999888754 5544 443 334566777888999998643 22211 11 23445
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEccc--C----
Q 038802 138 VRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV--E---- 211 (532)
Q Consensus 138 i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~--~---- 211 (532)
.+|++-+ ...+||+|+.+|.||+||--..+....+.+-.++|..|+++. +|+++++.+ +..+.+++... +
T Consensus 580 Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t~~~~g~~~g 655 (794)
T PF08553_consen 580 FSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDTLIKDGKNSG 655 (794)
T ss_pred ceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEEeeecCCccC
Confidence 6677665 556899999999999999543333334567789999999998 999877655 45677777531 1
Q ss_pred ------------Cce-eEEEe--cC--------CC--cEEEEEEec----CCCEEEEEcCCeEEEEEcc
Q 038802 212 ------------NSK-SVMEV--NH--------GK--PIEDVMFLP----SGGLIATAGGNSVKIWDLI 251 (532)
Q Consensus 212 ------------~~~-~~~~~--~~--------~~--~v~~i~~~~----~~~~l~~~~d~~i~iwd~~ 251 (532)
++. ..+.+ .| .. ..+...|+. ..+.|+++.+..+.+||++
T Consensus 656 ~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~ 724 (794)
T PF08553_consen 656 KLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFK 724 (794)
T ss_pred ccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHH
Confidence 001 11111 11 12 223444542 3457888889999999986
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0015 Score=64.16 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=116.2
Q ss_pred CEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEe---CC-CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCC
Q 038802 116 LIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGG---DD-GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 116 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 191 (532)
.+.+-|.+ +.....+......+..-+|+| ++..++..+ .. ..+.++|+++++...... ..+.-..-.|+| ++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DG 249 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CC
Confidence 34444443 444455554555667777888 555444332 22 469999998876544332 222233568999 66
Q ss_pred CEEE-EEeCCCe--EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcC--C--eEEEEEccCCCeeeEEccCCC
Q 038802 192 DMFV-TGSYDHT--VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG--N--SVKIWDLIGGGKMVYSMESHN 264 (532)
Q Consensus 192 ~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~~ 264 (532)
+.++ +...||. |.++|+....... +. ...+.-..-.|+|+|+.++-.+| | .|.++|...... ..+....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~ 325 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSG 325 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccC
Confidence 6554 5555665 6666777654222 21 22222235689999998888774 4 466666655432 3333333
Q ss_pred cceEEEEEeccCCCCCccccccEEEEEec-CCe--EEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC
Q 038802 265 KTVTSVCVGRVGNESGEEAMQYRILSVAL-DGY--MKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 265 ~~i~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
+.-..-.|+|+| .+++..+. +|. |.+.|+.++.....+........-+|.++|+.+...+..
T Consensus 326 ~~~~~p~~SpdG---------~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 326 GGNSNPVWSPDG---------DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCcCccCCCCC---------CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 333377888985 45554443 455 667777665544554444445566778888776654443
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.002 Score=62.03 Aligned_cols=145 Identities=15% Similarity=0.172 Sum_probs=103.7
Q ss_pred cCCCEEE-EEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecC------CCcEEEEEeCCCeEEEEECCCCe--EEEe
Q 038802 103 PDGSLLA-ASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFL------DKLHLVSGGDDGIVKFWDVAGES--VVLD 173 (532)
Q Consensus 103 ~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~------~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 173 (532)
.+.++|+ ++.....++-.|++.|+.+..++.+.. |+-+.+.|. +...-+.|-.|..|.-||++-.. .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3455555 455566788899999999999987777 666667662 12234556778899999987322 1222
Q ss_pred ccCC----CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEE
Q 038802 174 LFGH----KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWD 249 (532)
Q Consensus 174 ~~~~----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd 249 (532)
..+| .....|.+-. ...++++||.+|.|++||- .+....+...+.+.+|..+..+.+|+++++.++..+.+.+
T Consensus 422 ~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred eeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 2222 2334455543 5678999999999999996 5555555566788999999999999999999999888888
Q ss_pred cc
Q 038802 250 LI 251 (532)
Q Consensus 250 ~~ 251 (532)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 65
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.74 E-value=0.084 Score=55.27 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=152.1
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe-eccCceeEEEEEccC--C----CEEEEEcCCCCEEEEEC-
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI-SSFKDVVTCSSFRPD--G----SLLAASDLSGLIQVFDV- 122 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~----~~l~~g~~dg~i~iwd~- 122 (532)
.+.++....+.+...++.++.++.+...++..+...... ......|.|+.++|- + +++++|..+..+.+.-.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 345555555556667777777676666666655422111 223578999999983 2 37889987776555433
Q ss_pred CCCceEEEe--cC--CCCCEEEEEeecCCCcEEEEEeCCCeEEEEEC--CCCeEEEec--cCCCCceEEEEEeCCCCCEE
Q 038802 123 KSRTPLRRL--KS--HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV--AGESVVLDL--FGHKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 123 ~~~~~~~~~--~~--h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l 194 (532)
.+...+... .+ -...|.-..|-. +..+|.++..||.+..|.+ .++.....- .-...++.--.|+......+
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE
Confidence 333322222 11 123344444543 5789999999999877655 444332211 12344555555665344455
Q ss_pred EEEeCCCeEEEEEcccCCceeEEEecCCCcEEEE-EEec--CCCEEEEEcCCeEEEEEccCCCe-eeEEccCCCcceEEE
Q 038802 195 VTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDV-MFLP--SGGLIATAGGNSVKIWDLIGGGK-MVYSMESHNKTVTSV 270 (532)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~--~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~ 270 (532)
++++ |.-..+|.-+. ...+..-.-..+..+ .|+. -...++.+..+.+++.-+..-.+ .+.++. -......+
T Consensus 646 fa~s-drP~viY~~n~---kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI 720 (1096)
T KOG1897|consen 646 FALS-DRPTVIYSSNG---KLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRI 720 (1096)
T ss_pred EEeC-CCCEEEEecCC---cEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhhe
Confidence 5444 44455554332 112211111111111 2222 23467777777777776653322 223322 22334555
Q ss_pred EEeccCCCCCccccccEEEEEec-----------C---CeEEEEECCCceEEEeeecCC-----CeeEEEEecC-CCEEE
Q 038802 271 CVGRVGNESGEEAMQYRILSVAL-----------D---GYMKVFDYGKMKVTHSMRFPA-----PLMSVAFSPD-CMTRV 330 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~s~~~-----------d---g~i~iwd~~~~~~~~~~~~~~-----~v~~~~~s~~-~~~l~ 330 (532)
++.+. ...+.+.+. . ..++++|-++.+.++..+... .|.++.|..| +.+++
T Consensus 721 ~~q~~---------sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~v 791 (1096)
T KOG1897|consen 721 CYQES---------SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYV 791 (1096)
T ss_pred Eeccc---------ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEE
Confidence 55542 112222211 1 248889999988887766432 4555568877 78888
Q ss_pred EEec----------CCcEEEEeecCc
Q 038802 331 IGTS----------NGTIFAGRRKKK 346 (532)
Q Consensus 331 ~g~~----------dg~i~iw~~~~~ 346 (532)
+|+. .|.|.+|.+...
T Consensus 792 VGT~~v~Pde~ep~~GRIivfe~~e~ 817 (1096)
T KOG1897|consen 792 VGTGLVYPDENEPVNGRIIVFEFEEL 817 (1096)
T ss_pred EEEEeeccCCCCcccceEEEEEEecC
Confidence 8874 689999999873
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.035 Score=52.05 Aligned_cols=217 Identities=17% Similarity=0.157 Sum_probs=122.1
Q ss_pred EEccCCC-EEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc---
Q 038802 100 SFRPDGS-LLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF--- 175 (532)
Q Consensus 100 ~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--- 175 (532)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.... .+..|+++.. .+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3566665 444555677888888876542 2232 223334444432 4445555543 35666666554422221
Q ss_pred -C-CCCceEEEEEeCCCCCEEEEEeC-----------CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-
Q 038802 176 -G-HKDYVRCGDCSPVNGDMFVTGSY-----------DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG- 241 (532)
Q Consensus 176 -~-~~~~v~~i~~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~- 241 (532)
+ .....+.+.+.| ++.+.++... -|.++.+|. .+ ........+-..-+.++||||++.+..+.
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 123445677788 7777665443 133444443 22 22222223344557899999998887776
Q ss_pred -CCeEEEEEccC-CC-----eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC-eEEEEECCCceEEEeeec
Q 038802 242 -GNSVKIWDLIG-GG-----KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG-YMKVFDYGKMKVTHSMRF 313 (532)
Q Consensus 242 -d~~i~iwd~~~-~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~ 313 (532)
.+.|.-|++.. .. ..........+..-.++...+ +.+.+++..+| .|.+|+.. ++.+..+..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad---------G~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD---------GNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC---------CCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 47888887752 10 111222223344445555555 44444554444 89999988 999999987
Q ss_pred C-CCeeEEEEe-cCCCEEEEEec
Q 038802 314 P-APLMSVAFS-PDCMTRVIGTS 334 (532)
Q Consensus 314 ~-~~v~~~~~s-~~~~~l~~g~~ 334 (532)
+ ..+++++|- |+.+.|++.+.
T Consensus 253 P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCccceEeCCCcCEEEEEec
Confidence 7 788888886 45555554443
No 373
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.67 E-value=0.066 Score=52.25 Aligned_cols=274 Identities=15% Similarity=0.119 Sum_probs=153.7
Q ss_pred CCeEEEEEeCCeEEEEeCCCceE----EEEeeccCceeEEEEEcc-----CCCEEEEEcCCCCEEEEECCC--Cc-----
Q 038802 63 TSHLFAATHSASLTLFSSQTLEK----HSAISSFKDVVTCSSFRP-----DGSLLAASDLSGLIQVFDVKS--RT----- 126 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd~~~--~~----- 126 (532)
...+++|+.+|.++||+...... +..-..-..+|..+...+ +...||+ -.-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 34899999999999999854321 111122356787776543 2334555 3466788887721 11
Q ss_pred --eEEEecCCCCCE--EEEE---eecC-CCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 127 --PLRRLKSHTRPV--RFVK---YPFL-DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 127 --~~~~~~~h~~~i--~~~~---~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
.+..+..|.-.- ..++ |-.. +..++.+-+-||.+.+|+-+.....+.+.. ---...+.+.+ ..+.|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~-~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP-RTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee-cCCEEEEec
Confidence 222222333222 2222 2211 257889999999999999765443333332 22223567888 778889998
Q ss_pred CCCeEEEEEccc---------------------CCceeEEEecCCCcEEEEEEec---CCCEEEEEcCCeEEEEEccCCC
Q 038802 199 YDHTVKLWDVRV---------------------ENSKSVMEVNHGKPIEDVMFLP---SGGLIATAGGNSVKIWDLIGGG 254 (532)
Q Consensus 199 ~dg~i~iwd~~~---------------------~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~d~~i~iwd~~~~~ 254 (532)
.+..+..|.... .+....+...-+..+..+..-. ....+++-+...+.+.+.. +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 888898887521 1112233444555665555433 3345555666777777753 2
Q ss_pred eeeEEccCCCcceEEEE-Eec-cCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEe---cCCCEE
Q 038802 255 KMVYSMESHNKTVTSVC-VGR-VGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFS---PDCMTR 329 (532)
Q Consensus 255 ~~~~~~~~~~~~i~~~~-~~~-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s---~~~~~l 329 (532)
......+- ...-.+++ +.. ... .......++.++.++++.||. ..+++...+.+....++... .-...|
T Consensus 272 ~l~~~krL-d~~p~~~~~Y~~~~~~---~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~I 345 (418)
T PF14727_consen 272 SLRFQKRL-DYNPSCFCPYRVPWYN---EPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLI 345 (418)
T ss_pred eEEEEEec-CCceeeEEEEEeeccc---CCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceE
Confidence 33333222 22222222 211 000 000123588899999999996 44455555444333344433 334578
Q ss_pred EEEecCCcEEEEeecCcc
Q 038802 330 VIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 330 ~~g~~dg~i~iw~~~~~~ 347 (532)
++-+.+|.+.+-=+.|..
T Consensus 346 V~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEcCCCcEEEEEeCCCC
Confidence 888899999887776654
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0071 Score=46.17 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=66.7
Q ss_pred EEEEEeecC---CCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCce
Q 038802 138 VRFVKYPFL---DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK 214 (532)
Q Consensus 138 i~~~~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 214 (532)
|+++++... ..+.|++||.|..|++|+- ...+..+.. .+.|++++-.. +..|+.+..+|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~----~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRS----Q 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCc----c
Confidence 566666542 3468999999999999984 456666653 45677777665 4779999999999999753 3
Q ss_pred eEEEecCCCcEEEEEEec-CC--C-EEEEE-cCCeEE
Q 038802 215 SVMEVNHGKPIEDVMFLP-SG--G-LIATA-GGNSVK 246 (532)
Q Consensus 215 ~~~~~~~~~~v~~i~~~~-~~--~-~l~~~-~d~~i~ 246 (532)
..+.......+.++.+.. ++ . -|++| ++|.|-
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344444555577776654 22 1 34444 467653
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0065 Score=62.58 Aligned_cols=214 Identities=8% Similarity=0.120 Sum_probs=108.2
Q ss_pred eEEEEeCCCceEEEEeeccCcee-EEEEEccCCCEEEEEcCC------CCEEEEECCCCceEEE--ecCCCCCEEEEEee
Q 038802 74 SLTLFSSQTLEKHSAISSFKDVV-TCSSFRPDGSLLAASDLS------GLIQVFDVKSRTPLRR--LKSHTRPVRFVKYP 144 (532)
Q Consensus 74 ~v~i~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~--~~~h~~~i~~~~~~ 144 (532)
.+..||..+.+-...-....... .+++ .-++...+.||.+ ..+..||..+...... +.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 46778877654322111111111 1222 2367777788753 3477888876543211 1111111222222
Q ss_pred cCCCcEEEEEeCCC-----eEEEEECCCCeEEE--eccCCCCceEEEEEeCCCCCEEEEEeCCC----------------
Q 038802 145 FLDKLHLVSGGDDG-----IVKFWDVAGESVVL--DLFGHKDYVRCGDCSPVNGDMFVTGSYDH---------------- 201 (532)
Q Consensus 145 ~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~s~dg---------------- 201 (532)
++...+.||.++ ++..||..+.+-.. .+....... +++.. ++.+.+.|+.++
T Consensus 351 --~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 --DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred --CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence 677788888764 47889987654322 111111111 12222 677777787653
Q ss_pred -------eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C------CeEEEEEccC-C-CeeeEEccCCCc
Q 038802 202 -------TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G------NSVKIWDLIG-G-GKMVYSMESHNK 265 (532)
Q Consensus 202 -------~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d------~~i~iwd~~~-~-~~~~~~~~~~~~ 265 (532)
.+..||..+.+-...........-.+++. -+|++.+.|+ + ..+..||..+ . ...+..+.....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 47778877644332222211111112222 2567666665 3 2467899876 2 344444433333
Q ss_pred ceEEEEEeccCCCCCccccccEEEEEecCC--eEEEEECCCce
Q 038802 266 TVTSVCVGRVGNESGEEAMQYRILSVALDG--YMKVFDYGKMK 306 (532)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 306 (532)
....+.+ + +...++||.|| .+..||..+.+
T Consensus 505 ~~~~~~~--~---------~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 ALHTILH--D---------NTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEE--C---------CEEEEEeeecceeehhhcCccccc
Confidence 3333333 2 57888898888 67777776644
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.56 E-value=0.018 Score=59.30 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=103.7
Q ss_pred CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc------CCC--CEEEEECCCCceEEEecCCCCCEEEEEe
Q 038802 72 SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD------LSG--LIQVFDVKSRTPLRRLKSHTRPVRFVKY 143 (532)
Q Consensus 72 d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~------~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 143 (532)
+|.+.-.+-.....+.-..+....+...+++|||+.++... .|+ .+.+++.. +.......+. ..+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceE
Confidence 66665554332222222222234678889999999887654 243 45555542 2222222222 3677889
Q ss_pred ecCCCcEEEEEeCC------------CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEE---EEc
Q 038802 144 PFLDKLHLVSGGDD------------GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKL---WDV 208 (532)
Q Consensus 144 ~~~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i---wd~ 208 (532)
+| ++..+++.+.. +.+.+.+++.+.... .....|..+.|+| +|..++... +|.|.+ -..
T Consensus 405 sp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 405 SL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred CC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99 76766666432 233333444333222 2355799999999 998887765 477776 332
Q ss_pred ccCCceeE-----EEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccC--CCcceEEEEEec
Q 038802 209 RVENSKSV-----MEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMES--HNKTVTSVCVGR 274 (532)
Q Consensus 209 ~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~ 274 (532)
..+. ... ........+.++.|.+++.+++...++...+|.+.-.+.....+.. ....+..++-++
T Consensus 479 ~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 479 EDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred CCCc-eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 2322 111 1223334468899999998765544444444554322222222122 244566666554
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00046 Score=67.61 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=79.9
Q ss_pred CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE-EEEEeCCCCCEEEEEeCCCeEEEEEcccCCc
Q 038802 135 TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR-CGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213 (532)
Q Consensus 135 ~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (532)
...|.-+.|+| ....+|.+..+|.|.+..++ .+.+.++..|...++ +++|.| +|+.++.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 44577889999 89999999999999999887 777888887777777 999999 999999999999999999998766
Q ss_pred eeEEEecCCCcEEEEEEec
Q 038802 214 KSVMEVNHGKPIEDVMFLP 232 (532)
Q Consensus 214 ~~~~~~~~~~~v~~i~~~~ 232 (532)
.......-..+|.++-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 6554455567788888863
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.53 E-value=0.013 Score=60.39 Aligned_cols=226 Identities=17% Similarity=0.181 Sum_probs=120.0
Q ss_pred CCeEEEEEeC------CeEEEEeCCCceEEEEeec-cCceeEEEEEccCCCEEEEEcCC-C-----CEEEEECCCCceEE
Q 038802 63 TSHLFAATHS------ASLTLFSSQTLEKHSAISS-FKDVVTCSSFRPDGSLLAASDLS-G-----LIQVFDVKSRTPLR 129 (532)
Q Consensus 63 ~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~d-g-----~i~iwd~~~~~~~~ 129 (532)
+..+++|+.. ..+..||..++.-.....- ....-.++++. ++...++|+.| | ++..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4455666655 3677888877643322211 12223334433 56788888888 3 57788877665332
Q ss_pred E--ecCCCCCEEEEEeecCCCcEEEEEeCCCe-----EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCC-
Q 038802 130 R--LKSHTRPVRFVKYPFLDKLHLVSGGDDGI-----VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDH- 201 (532)
Q Consensus 130 ~--~~~h~~~i~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg- 201 (532)
. +............ ++...++||.||. |-.||..+.+-...- .......+......++.+.++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred cCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 1 1111111112222 7888999999864 677887665422111 11112233333333788888888665
Q ss_pred -----eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC-----eEEEEEccCCC-eeeEEccCCCcceEE
Q 038802 202 -----TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN-----SVKIWDLIGGG-KMVYSMESHNKTVTS 269 (532)
Q Consensus 202 -----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~-----~i~iwd~~~~~-~~~~~~~~~~~~i~~ 269 (532)
++..||..+......-.......-..++.. ++.+.+.|+ |+ +|..||..+.. ..+..+......+..
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 467888877554433333222222233333 567777776 54 47888887652 222222222222222
Q ss_pred EEEeccCCCCCccccccEEEEEecCCe-----EEEEECCCc
Q 038802 270 VCVGRVGNESGEEAMQYRILSVALDGY-----MKVFDYGKM 305 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~ 305 (532)
..+ + +...+.|+.||. |..||..+.
T Consensus 519 ~~~---~--------~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 519 VVL---G--------GKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEE---C--------CEEEEEecccCccccceeEEcCCCCC
Confidence 222 2 567788887763 666665553
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.51 E-value=0.015 Score=44.42 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=70.1
Q ss_pred eEEEEEeCCCC---CEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeee
Q 038802 181 VRCGDCSPVNG---DMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMV 257 (532)
Q Consensus 181 v~~i~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 257 (532)
|+++++...++ +-|++||.|..|++|+-. ...........|.+++-...+++.++-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~---~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS---QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc---cee
Confidence 56777665433 689999999999999753 33444456778888888877666666569999999842 334
Q ss_pred EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEE
Q 038802 258 YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKV 299 (532)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 299 (532)
...+... .++++.+..... ....-|++|-.+|.|-+
T Consensus 75 WRiKSK~-~~~~~~~~D~~g-----dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDING-----DGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC-CeEEEEEEcCCC-----CCceEEEEEecCCeEEe
Confidence 4444333 356665543321 01356888888888743
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.50 E-value=0.0097 Score=61.21 Aligned_cols=185 Identities=17% Similarity=0.127 Sum_probs=104.7
Q ss_pred cccCeeEEEEcCCCCeEEEEEe------CC--eEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC-------
Q 038802 50 LVSSINSIVFSPTTSHLFAATH------SA--SLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS------- 114 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~------d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------- 114 (532)
....+.+.+++|+|..++.... |+ .+.+++.. +.. ..+.. ....+.-.|+|||+.|++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3346789999999998877662 33 56666643 222 33322 2237788999999888776432
Q ss_pred -----CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEE---EECCCCeE-E---Eec-cCCCCce
Q 038802 115 -----GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKF---WDVAGESV-V---LDL-FGHKDYV 181 (532)
Q Consensus 115 -----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~i---wd~~~~~~-~---~~~-~~~~~~v 181 (532)
+.+.+.++..+.... ...+.|..+.|+| ++..++... +|.|.+ -....|.. + ..+ ..-.+.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 233333444333222 2356799999999 888777765 477777 44344431 1 112 2233446
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE--EecCCCcEEEEEEecCCCEEEEEcCCeE
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM--EVNHGKPIEDVMFLPSGGLIATAGGNSV 245 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~d~~i 245 (532)
.++.|.+ ++.+ +++..++...+|.+.-....... ......++.+++-+++ .++++.+++.+
T Consensus 500 ~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g~~ 562 (591)
T PRK13616 500 VSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDARAVL 562 (591)
T ss_pred ccceEec-CCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcCCceE
Confidence 7899997 6664 45555554555554322122211 1123566777777763 44444445533
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.018 Score=59.18 Aligned_cols=226 Identities=16% Similarity=0.147 Sum_probs=119.9
Q ss_pred CCCEEEEEcCCC------CEEEEECCCCceEEEecC-CCCCEEEEEeecCCCcEEEEEeCC------CeEEEEECCCCeE
Q 038802 104 DGSLLAASDLSG------LIQVFDVKSRTPLRRLKS-HTRPVRFVKYPFLDKLHLVSGGDD------GIVKFWDVAGESV 170 (532)
Q Consensus 104 ~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~ 170 (532)
.+.+++.|+.++ .+..||..++.......- +...-.+++.. ++...++||.| .++..||..+.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 456777777663 577888877643322221 22233445554 67888899988 3577888877653
Q ss_pred EEeccCCCCceEEEEEeCCCCCEEEEEeCCCe-----EEEEEcccCCceeEEEecCCCcEEEEEE-ecCCCEEEEEc-CC
Q 038802 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT-----VKLWDVRVENSKSVMEVNHGKPIEDVMF-LPSGGLIATAG-GN 243 (532)
Q Consensus 171 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~-d~ 243 (532)
.. ...-...-........++.+.++|+.||. +-.||..+.+....-.... ....... .-+|.+.++|+ ++
T Consensus 362 ~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred ec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCC
Confidence 22 21111111112222227889999999974 7788887754433332221 2222222 22677777776 42
Q ss_pred ------eEEEEEccCCC-eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCe-----EEEEECCCceEEEee
Q 038802 244 ------SVKIWDLIGGG-KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY-----MKVFDYGKMKVTHSM 311 (532)
Q Consensus 244 ------~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~ 311 (532)
++..||..++. ..+..+..-..... ++... +.+++.||.|+. |..||..+.+-...-
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~----------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLN----------GKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEEC----------CEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 57888877652 12222221122222 33222 567788887763 778888775443332
Q ss_pred ecCCCeeEEEE-ecCCCEEEEEecCCc-----EEEEeecC
Q 038802 312 RFPAPLMSVAF-SPDCMTRVIGTSNGT-----IFAGRRKK 345 (532)
Q Consensus 312 ~~~~~v~~~~~-s~~~~~l~~g~~dg~-----i~iw~~~~ 345 (532)
....+...+.. .-++...++|+.||. |-.||..+
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 22222222211 234567778887764 44554443
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00038 Score=42.00 Aligned_cols=39 Identities=31% Similarity=0.479 Sum_probs=34.0
Q ss_pred ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 83 LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
++....+..|...|.++.|.+++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778889999999999999999999999999996
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.47 E-value=0.071 Score=51.20 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=96.2
Q ss_pred CCCeEEEEE-eCCeEEEEeCCC----ceEEEEeec---cC----ceeEEEEEccCCCEEEEE--cC----CCCEEEEECC
Q 038802 62 TTSHLFAAT-HSASLTLFSSQT----LEKHSAISS---FK----DVVTCSSFRPDGSLLAAS--DL----SGLIQVFDVK 123 (532)
Q Consensus 62 ~~~~l~~~~-~d~~v~i~~~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~g--~~----dg~i~iwd~~ 123 (532)
+.++|++.+ .+++|+|+|+.+ .+..+.+.. +. .....+.--|+|+.++++ +. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455777766 678999999873 455555543 11 122233334689888875 22 2458888888
Q ss_pred CCceEEEecCC---CCCEEEEEeecCCCcEEEEEe--------------------CCCeEEEEECCCCeEEEeccCCCC-
Q 038802 124 SRTPLRRLKSH---TRPVRFVKYPFLDKLHLVSGG--------------------DDGIVKFWDVAGESVVLDLFGHKD- 179 (532)
Q Consensus 124 ~~~~~~~~~~h---~~~i~~~~~~~~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~- 179 (532)
+.+........ ..--..+.|.| ..+.++|.. ...++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 77777666542 22345677888 777788764 246799999999999998864332
Q ss_pred -ceEEEEEeC--CCCCEEEEEeCCCeEEEEEc-ccCC--ceeEEEecC------------------CCcEEEEEEecCCC
Q 038802 180 -YVRCGDCSP--VNGDMFVTGSYDHTVKLWDV-RVEN--SKSVMEVNH------------------GKPIEDVMFLPSGG 235 (532)
Q Consensus 180 -~v~~i~~~~--~~~~~l~s~s~dg~i~iwd~-~~~~--~~~~~~~~~------------------~~~v~~i~~~~~~~ 235 (532)
....+.|.. ....-|+.+.-.++|..|-- ..+. ...+..+.. ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 244566654 12223444444555555533 2221 112222211 24478999999999
Q ss_pred EEEEEc--CCeEEEEEccCCCe
Q 038802 236 LIATAG--GNSVKIWDLIGGGK 255 (532)
Q Consensus 236 ~l~~~~--d~~i~iwd~~~~~~ 255 (532)
+|..+. .|.|+.||+.....
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEEEEcccCCcEEEEecCCCCC
Confidence 999888 89999999987543
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.00022 Score=61.10 Aligned_cols=144 Identities=12% Similarity=-0.006 Sum_probs=81.3
Q ss_pred EEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEE
Q 038802 194 FVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272 (532)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 272 (532)
+...+.||.+.-++++..+.......-+.... ....-+.-+++|+ +|.|.+|.....+........-...|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I- 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI- 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc-
Confidence 44456788888888876433322222222221 1112234455555 999999987633222222222222332222
Q ss_pred eccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cC-CCeeEEEEecCCCEEEEE--ecCCcEEEEeecCccc
Q 038802 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FP-APLMSVAFSPDCMTRVIG--TSNGTIFAGRRKKKEN 348 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~v~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~ 348 (532)
|.+. .+.+.++++.||.|+.|++..++.+.... |. .++.....+..+++++.+ |.|..++.|++..-..
T Consensus 109 -p~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 109 -PNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred -cccc------ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 2221 14589999999999999999888776665 33 355555555555666666 6666666666655433
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.096 Score=49.15 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=123.0
Q ss_pred EEEcCCCCeE-EEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecC--
Q 038802 57 IVFSPTTSHL-FAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKS-- 133 (532)
Q Consensus 57 i~~sp~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-- 133 (532)
-.|.++...| .+--..+.|.-|+..+++... +.. .+.+.++.....+..|+++. .-+.+++.+++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 3566776644 444457889999987654332 222 33345544444444555554 2366777765554332221
Q ss_pred ---CCCCEEEEEeecCCCcEEEEEeC-----------CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 134 ---HTRPVRFVKYPFLDKLHLVSGGD-----------DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 134 ---h~~~i~~~~~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
.....+.+...| ++.+.++... -|.|+.+|. .+..+..+..+-..-+.++|+| +++.|+.+..
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 113445667777 6665444332 134555554 4555555555555667899999 8866665544
Q ss_pred -CCeEEEEEccc--C---Cce-eEEEecCCCcEEEEEEecCCCEEEEEc-CC-eEEEEEccCCCeeeEEccCCCcceEEE
Q 038802 200 -DHTVKLWDVRV--E---NSK-SVMEVNHGKPIEDVMFLPSGGLIATAG-GN-SVKIWDLIGGGKMVYSMESHNKTVTSV 270 (532)
Q Consensus 200 -dg~i~iwd~~~--~---~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~ 270 (532)
.+.|.-|++.. + ... ........+..-.++...+|.+.+++. +| .|.+|+.. + +.+..+......++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCCCccc
Confidence 47788887752 1 111 111112345667788888898886555 43 99999977 4 7777777776788888
Q ss_pred EEec
Q 038802 271 CVGR 274 (532)
Q Consensus 271 ~~~~ 274 (532)
+|--
T Consensus 261 ~FgG 264 (307)
T COG3386 261 AFGG 264 (307)
T ss_pred eEeC
Confidence 8864
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.40 E-value=0.24 Score=52.05 Aligned_cols=283 Identities=11% Similarity=0.082 Sum_probs=152.6
Q ss_pred cccCeeEEEEcCCC------CeEEEEEeCCeEEEEe-CCCceEEEEe--ec--cCceeEEEEEccCCCEEEEEcCCCCEE
Q 038802 50 LVSSINSIVFSPTT------SHLFAATHSASLTLFS-SQTLEKHSAI--SS--FKDVVTCSSFRPDGSLLAASDLSGLIQ 118 (532)
Q Consensus 50 h~~~V~~i~~sp~~------~~l~~~~~d~~v~i~~-~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~ 118 (532)
....|.|++++|-| +++++|..+..+.+.- ..+....... .+ -...|.-..|-.|..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 35689999999852 2677887776555432 2333322221 11 123455556666788999999999887
Q ss_pred EEEC--CCCceEEEe--cCCCCCEEEEEeecCCCcEEEEEeC--------------------------------------
Q 038802 119 VFDV--KSRTPLRRL--KSHTRPVRFVKYPFLDKLHLVSGGD-------------------------------------- 156 (532)
Q Consensus 119 iwd~--~~~~~~~~~--~~h~~~i~~~~~~~~~~~~l~s~s~-------------------------------------- 156 (532)
-|.+ .++..-..- .-...|+.--.|+....+.++++++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 6655 333221111 1122333333333322222222221
Q ss_pred ---CCeEEEEECCCCeE--EEeccCCCCceEEEEEeCCCCCEEEEEeCC--------------CeEEEEEcccCCceeEE
Q 038802 157 ---DGIVKFWDVAGESV--VLDLFGHKDYVRCGDCSPVNGDMFVTGSYD--------------HTVKLWDVRVENSKSVM 217 (532)
Q Consensus 157 ---dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~~~~~~ 217 (532)
.+.+++..++.-+. ++++. -....+.+++.+ ....+.+.+.. ..++++|-++.+.....
T Consensus 689 ~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 689 SANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 12223322221111 11211 122334455554 33333333221 23667776665444444
Q ss_pred EecCCC---cEEEEEEecC-CCEEEEEc-----------CCeEEEEEccCCCeeeEEccC--CCcceEEEEEeccCCCCC
Q 038802 218 EVNHGK---PIEDVMFLPS-GGLIATAG-----------GNSVKIWDLIGGGKMVYSMES--HNKTVTSVCVGRVGNESG 280 (532)
Q Consensus 218 ~~~~~~---~v~~i~~~~~-~~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~ 280 (532)
.+.... .+.++.|..| +.++++|. .|.|.+|.+... ..+..... -.+.+.++..-.
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~fn------ 839 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVEFN------ 839 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-CceeeeeeeeeccceeehhhhC------
Confidence 443333 3445558776 66777663 267888877663 22222211 234455554432
Q ss_pred ccccccEEEEEecCCeEEEEECCCceEEEe-eecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHS-MRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 281 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
+.++ ++-...|++|++.+.+.++. ..+..++..+...-.|..+++|..-+.+.+-..+..+
T Consensus 840 ----gkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 840 ----GKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ----CeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 3344 44467899999998854443 3477899999999999999999999998888877665
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0051 Score=64.37 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCCEEEEECCCC-ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE
Q 038802 104 DGSLLAASDLSGLIQVFDVKSR-TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR 182 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 182 (532)
.+..++.|+..|.+-..|+... .+...=..-.++|++++|+. ++..++.|-.+|.|.+||+..++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 5667999999999988887643 11122223468999999998 999999999999999999999999988887777666
Q ss_pred EEEEeCC--CCCEEEEEeCCCeEEEEEc
Q 038802 183 CGDCSPV--NGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 183 ~i~~~~~--~~~~l~s~s~dg~i~iwd~ 208 (532)
++-+.-. ++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6544321 4456777777775 5554
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.069 Score=48.19 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=128.3
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeecc-CceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSF-KDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
+.+.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.+.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 335666667999999999999999988888778877788888887532 1234567788888888888888889888876
Q ss_pred CCceEEEec---------CC-CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE---EEeccCC-------CCceEE
Q 038802 124 SRTPLRRLK---------SH-TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV---VLDLFGH-------KDYVRC 183 (532)
Q Consensus 124 ~~~~~~~~~---------~h-~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~-------~~~v~~ 183 (532)
....+..+. .+ +.....++|.| ....|+.+-+-.-+.||.+..... .+....+ -..|.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 553222211 12 56778999999 666777777777777776653321 1111111 234677
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec---C-----CCcEEEEEEecCCCEEEEEc
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN---H-----GKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~-----~~~v~~i~~~~~~~~l~~~~ 241 (532)
+.|++..+.+++-+..++.+.-.|.... ........ | -.....++..++|.+.+++-
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 8888877888888888888888887643 22222211 1 11234566666665555444
No 389
>PHA02713 hypothetical protein; Provisional
Probab=97.35 E-value=0.016 Score=59.76 Aligned_cols=186 Identities=8% Similarity=0.031 Sum_probs=95.5
Q ss_pred CCCeEEEEEeC------CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCC-----CEEEEECCCCceEE-
Q 038802 62 TTSHLFAATHS------ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSG-----LIQVFDVKSRTPLR- 129 (532)
Q Consensus 62 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~- 129 (532)
++...++|+.+ ..+..||..+..-...-.-....-......-+|+..+.||.++ ++..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45566666643 3577888776543211111111111112223677888888764 47889987654322
Q ss_pred -EecCCCCCEEEEEeecCCCcEEEEEeCCC-----------------------eEEEEECCCCeEEEeccCCCCceE-EE
Q 038802 130 -RLKSHTRPVRFVKYPFLDKLHLVSGGDDG-----------------------IVKFWDVAGESVVLDLFGHKDYVR-CG 184 (532)
Q Consensus 130 -~~~~h~~~i~~~~~~~~~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~v~-~i 184 (532)
.+.........+.+ ++...+.||.++ .+..||..+.+-...-.-...... ++
T Consensus 383 ~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 11111111122222 677777777653 477788776543211111111111 22
Q ss_pred EEeCCCCCEEEEEeCCC------eEEEEEccc-CCceeEEEecCCCcEEEEEEecCCCEEEEEc-CC--eEEEEEccCC
Q 038802 185 DCSPVNGDMFVTGSYDH------TVKLWDVRV-ENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN--SVKIWDLIGG 253 (532)
Q Consensus 185 ~~~~~~~~~l~s~s~dg------~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~--~i~iwd~~~~ 253 (532)
+.. ++.+.+.|+.++ .+..||..+ .+-.............+++.. +|++.+.|+ ++ .+..||..+.
T Consensus 460 ~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 460 VSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence 222 567777777642 467899886 444433333322222333333 677888887 66 6778887665
No 390
>PRK10115 protease 2; Provisional
Probab=97.34 E-value=0.3 Score=51.85 Aligned_cols=240 Identities=10% Similarity=-0.026 Sum_probs=119.9
Q ss_pred cCeeEEEEcCCCCeEEEEEeC-----CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC------CCEEEE
Q 038802 52 SSINSIVFSPTTSHLFAATHS-----ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS------GLIQVF 120 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iw 120 (532)
-.+..+.++||+++|+.+... ..+++.|+.++..+...-. +.-..++|.+|++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 457788999999988876442 3788999988763322211 112458999999877765432 367888
Q ss_pred ECCCC--ceEEEecCCCCCEEEEEeecCCCcEEEEEeC---CCeEEEEECC--CCeEEEeccCCCCceEEEEEeCCCCCE
Q 038802 121 DVKSR--TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD---DGIVKFWDVA--GESVVLDLFGHKDYVRCGDCSPVNGDM 193 (532)
Q Consensus 121 d~~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~ 193 (532)
++.++ +....+...........+.+.++.+++..+. ++.+.+++.. ++.....+....+....+. +. . ..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~ 281 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-Q-HR 281 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-C-CE
Confidence 88877 3334444333334323333335665554433 3568888842 3332222221112222222 32 2 33
Q ss_pred EEEEeCC--C--eEEEEEcccCCceeEEEecC--CCcEEEEEEecCCCEEEEEc-CCe--EEEEEccCCCeeeEEcc-CC
Q 038802 194 FVTGSYD--H--TVKLWDVRVENSKSVMEVNH--GKPIEDVMFLPSGGLIATAG-GNS--VKIWDLIGGGKMVYSME-SH 263 (532)
Q Consensus 194 l~s~s~d--g--~i~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~-d~~--i~iwd~~~~~~~~~~~~-~~ 263 (532)
|..-+.. . .|...++.....-.. ...+ ...+..+.+. .+.++++.. ++. +.++|..+. .+..+. ..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~-l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~--~~~~l~~~~ 357 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEE-LIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR--EVIGIAFDD 357 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeE-EECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC--ceEEecCCC
Confidence 3333322 2 344444442111112 2233 3478888887 334444444 554 555554322 233332 22
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEec---CCeEEEEECCCce
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVAL---DGYMKVFDYGKMK 306 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 306 (532)
...+..+.++++.. ...++++.+. -+.+..+|+.+++
T Consensus 358 ~~~~~~~~~~~~~~------~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPE------TSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCC------CceEEEEEecCCCCCEEEEEECCCCc
Confidence 22233333332210 0234444433 3678889988765
No 391
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00072 Score=40.69 Aligned_cols=38 Identities=45% Similarity=0.711 Sum_probs=33.2
Q ss_pred ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 038802 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164 (532)
Q Consensus 126 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd 164 (532)
++...+..|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45666778899999999998 778999999999999996
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.012 Score=56.82 Aligned_cols=140 Identities=13% Similarity=0.099 Sum_probs=91.6
Q ss_pred EEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC--------EEEEEcCCeEEEEEccCCCe-eeEEccCC
Q 038802 193 MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG--------LIATAGGNSVKIWDLIGGGK-MVYSMESH 263 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~l~~~~d~~i~iwd~~~~~~-~~~~~~~~ 263 (532)
++.++.....++-.|+..++.+..+.+... |.-+.+.|+.+ .|+.-+++.|.-||.+-.+. .+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 344555566788888888777666665433 66677777543 56666688999999985443 33333333
Q ss_pred C----cceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcE
Q 038802 264 N----KTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTI 338 (532)
Q Consensus 264 ~----~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i 338 (532)
+ ....|.+-.. ..++++||.+|.|++||--.......++ ...+|..+..+.||+++++.|. ..+
T Consensus 426 qy~~k~nFsc~aTT~----------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTE----------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred ccccccccceeeecC----------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEE
Confidence 2 2334444443 3589999999999999963222222333 5679999999999999876654 455
Q ss_pred EEEeecC
Q 038802 339 FAGRRKK 345 (532)
Q Consensus 339 ~iw~~~~ 345 (532)
.+-+..-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 5555543
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.12 Score=46.24 Aligned_cols=233 Identities=19% Similarity=0.264 Sum_probs=131.9
Q ss_pred CeeEEEEcCCCCe-EEEEEeCC-eEEEEeCCCceEEEEeeccCc--eeEEEEEccCCCEEEEEcC-----CCCEEEEECC
Q 038802 53 SINSIVFSPTTSH-LFAATHSA-SLTLFSSQTLEKHSAISSFKD--VVTCSSFRPDGSLLAASDL-----SGLIQVFDVK 123 (532)
Q Consensus 53 ~V~~i~~sp~~~~-l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~ 123 (532)
.-..|+|+|..+. ++.+-.-| ...++|....+...++...++ .--.-.|+|||.+|+..-+ -|.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3446788887664 33343334 467889887776665543222 1122369999999998644 3789999987
Q ss_pred CC-ceEEEecCCCCCEEEEEeecCCCcEEEEEeC------C-C-----------eEEEEECCCCeEEEe--cc--CCCCc
Q 038802 124 SR-TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD------D-G-----------IVKFWDVAGESVVLD--LF--GHKDY 180 (532)
Q Consensus 124 ~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~------d-g-----------~i~iwd~~~~~~~~~--~~--~~~~~ 180 (532)
.+ +.+..+..|.-.-..+.|.+ |+..++.+.. | | ++.+.|..++..+.. +. .+.-.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred cccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 53 55667778887788899998 8887776542 0 1 123333333433322 11 23455
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeE-----EEEEcccCCceeEEEe------cCCCcEEEEEEecCCCEEEEEc--CCeEEE
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHTV-----KLWDVRVENSKSVMEV------NHGKPIEDVMFLPSGGLIATAG--GNSVKI 247 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~i-----~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~--d~~i~i 247 (532)
|+.++..+ ++..++.+-+.|-- .+=-.+.++....+.. .....|-+++.+.+..+++..+ ++...+
T Consensus 228 iRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 228 IRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred eeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 77777766 66665555443310 0000011111111111 1234567888887667776666 668999
Q ss_pred EEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 248 WDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
||..++ ..+.... -.....+..... =++..+.+|.+.++.
T Consensus 307 ~da~tG-~vv~~a~--l~daaGva~~~~-----------gf~vssg~G~~~~~s 346 (366)
T COG3490 307 WDAATG-AVVSEAA--LPDAAGVAAAKG-----------GFAVSSGQGRIIFYS 346 (366)
T ss_pred EEcCCC-cEEeccc--ccccccceeccC-----------ceEEecCCceEEecc
Confidence 999887 4443322 112223333332 256666688887774
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.28 E-value=0.1 Score=48.58 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=79.9
Q ss_pred eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEEC-CCC
Q 038802 90 SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV-AGE 168 (532)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~ 168 (532)
..-...+..+..++||+++++++......-||--...-...-......|..+.|.| ++.+.+ ....|.|+.=+. ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWM-LARGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEE-EETTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEE-EeCCcEEEEccCCCCc
Confidence 33456788888899999999987555556777543222222233567899999998 666544 448888888772 222
Q ss_pred eEEEe----ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe--cCCCcEEEEEEecCCCEEEEEcC
Q 038802 169 SVVLD----LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAGG 242 (532)
Q Consensus 169 ~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~d 242 (532)
..... +....-.+..++|.+ ++...++|+. |++. .....++.=..... .-...++.+.|.++.+-++.+.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred cccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 22111 112233478899988 6677776654 5443 23333222122211 23456889999888888888888
Q ss_pred CeEEEE
Q 038802 243 NSVKIW 248 (532)
Q Consensus 243 ~~i~iw 248 (532)
|.+--|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877554
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.24 E-value=0.21 Score=48.09 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=102.7
Q ss_pred CCCEEEEEc-CCCCEEEEECCC----CceEEEecC---CC----CCEEEEEeecCCCcEEEEEe--C----CCeEEEEEC
Q 038802 104 DGSLLAASD-LSGLIQVFDVKS----RTPLRRLKS---HT----RPVRFVKYPFLDKLHLVSGG--D----DGIVKFWDV 165 (532)
Q Consensus 104 ~~~~l~~g~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~i~~~~~~~~~~~~l~s~s--~----dg~i~iwd~ 165 (532)
+.++|+..+ .++.|+|+|+.+ .+..+.+.. +. ..-..+...| ++..++|+- . -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 455666655 678999999974 234444432 11 1122233345 777777742 2 256888888
Q ss_pred CCCeEEEeccCC---CCceEEEEEeCCCCCEEEEEe--------------------CCCeEEEEEcccCCceeEEEecCC
Q 038802 166 AGESVVLDLFGH---KDYVRCGDCSPVNGDMFVTGS--------------------YDHTVKLWDVRVENSKSVMEVNHG 222 (532)
Q Consensus 166 ~~~~~~~~~~~~---~~~v~~i~~~~~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~ 222 (532)
++.+........ ...-..+-|.| ..+.++|+. +..++.+||+.+.+....+.++..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 877776655432 23345677788 777777754 345899999999777777776644
Q ss_pred C-cEEEEEEec--CCCEEEEEc--CCeEEEEEc-cCCC---eeeEEccC-----C------------CcceEEEEEeccC
Q 038802 223 K-PIEDVMFLP--SGGLIATAG--GNSVKIWDL-IGGG---KMVYSMES-----H------------NKTVTSVCVGRVG 276 (532)
Q Consensus 223 ~-~v~~i~~~~--~~~~l~~~~--d~~i~iwd~-~~~~---~~~~~~~~-----~------------~~~i~~~~~~~~~ 276 (532)
+ ....+.|.. +..+-++++ ..+|..|-- ..+. +.+..+.. - ..-|+.+.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 4 345666654 444433333 555555543 2221 11222211 0 2457899999984
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCC---ceEEEeeec-----------------CCCeeEEEEecCCCEEEEEec
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGK---MKVTHSMRF-----------------PAPLMSVAFSPDCMTRVIGTS 334 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~g~~ 334 (532)
..+.+++=.+|.|+.||+.. -+++..+.. .+...-+..|-||+.|+..++
T Consensus 324 --------rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 --------RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---------EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred --------CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 33444555689999999976 333333321 123466889999999887654
No 396
>PRK10115 protease 2; Provisional
Probab=97.11 E-value=0.52 Score=50.05 Aligned_cols=238 Identities=11% Similarity=0.040 Sum_probs=119.8
Q ss_pred eeEEEEEccCCCEEEEEcC-C----CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeC-C-----CeEEEE
Q 038802 95 VVTCSSFRPDGSLLAASDL-S----GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGD-D-----GIVKFW 163 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~-d----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~-d-----g~i~iw 163 (532)
.+..+.++|||++|+.+.. + ..|++.|+.++..+...-.... ..++|.+ +++.|+.+.. + ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 4667889999999886632 2 3588999988764322211221 4589998 6655554433 2 368888
Q ss_pred ECCCC--eEEEeccCCCCceEEEEEeCCCCCEEEEEeC---CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEE
Q 038802 164 DVAGE--SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY---DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIA 238 (532)
Q Consensus 164 d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 238 (532)
++.++ +....+........-..+.+.++.+++..+. ++.+.+++.............+...+..-..+..+.+++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence 88877 3333333322323322233336666554443 346888885332111111122222222111233344444
Q ss_pred EEc-C-C--eEEEEEccCCCeeeEEccCC--CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEE--ECCCceEEEe
Q 038802 239 TAG-G-N--SVKIWDLIGGGKMVYSMESH--NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF--DYGKMKVTHS 310 (532)
Q Consensus 239 ~~~-d-~--~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~ 310 (532)
... + . .|...++.+... ...+..+ ...+..+.+.. +.++++...+|.-+++ +..++. +..
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~----------~~l~~~~~~~g~~~l~~~~~~~~~-~~~ 352 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFT----------DWLVVEERQRGLTSLRQINRKTRE-VIG 352 (686)
T ss_pred EEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEEC----------CEEEEEEEeCCEEEEEEEcCCCCc-eEE
Confidence 433 2 2 344444442212 2223333 23677777763 4567777777775555 443333 333
Q ss_pred eec--CCCeeEEEEe--cCCC-EEEEEec---CCcEEEEeecCcc
Q 038802 311 MRF--PAPLMSVAFS--PDCM-TRVIGTS---NGTIFAGRRKKKE 347 (532)
Q Consensus 311 ~~~--~~~v~~~~~s--~~~~-~l~~g~~---dg~i~iw~~~~~~ 347 (532)
+.. +..+..+.++ +++. ++++.++ -+.++.++..+++
T Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 353 IAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 332 2233333444 3433 4444333 3668888877653
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0012 Score=56.74 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCCEEEEECCC-CceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCC-Cce
Q 038802 104 DGSLLAASDLSGLIQVFDVKS-RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHK-DYV 181 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v 181 (532)
-+.-+++|+.+|.|.+|+..- +.....+..-...|.++.-.-.++.+..+++.||.|+.|++.-.+.+.....|+ .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 456789999999999998762 222222222233444433332255688999999999999999888887777777 455
Q ss_pred EEEEEeCCCCCEEEEE--eCCCeEEEEEccc
Q 038802 182 RCGDCSPVNGDMFVTG--SYDHTVKLWDVRV 210 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~--s~dg~i~iwd~~~ 210 (532)
.....+. .+.+++.+ |.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555554 55666666 6666777777654
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.014 Score=61.22 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCeEEEEEeCCeEEEEeCCCc-eEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEE
Q 038802 62 TTSHLFAATHSASLTLFSSQTL-EKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRF 140 (532)
Q Consensus 62 ~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 140 (532)
.+..++.|++.|.+...|.... .....=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3456888898899988887642 111111223579999999999999999999999999999999999888877666655
Q ss_pred EEe---ecCCCcEEEEEeCCCeEEEEEC
Q 038802 141 VKY---PFLDKLHLVSGGDDGIVKFWDV 165 (532)
Q Consensus 141 ~~~---~~~~~~~l~s~s~dg~i~iwd~ 165 (532)
+-+ .. ++..++++...|. +|.+
T Consensus 178 vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 543 32 4446777777776 5543
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.24 Score=44.69 Aligned_cols=271 Identities=15% Similarity=0.051 Sum_probs=147.6
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccC--ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCc--
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK--DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT-- 126 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-- 126 (532)
.+-+..+.++. ++...+..+.-++|.|+.+......+...+ +--.++ .-.|++..++..|.-..+.|+.+.+
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCc
Confidence 34556666764 477777888889999997765444332222 333444 4468899888866667788886543
Q ss_pred -eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE---EEeccCCCCceEEEEEeCCCCCEEEEEeCCCe
Q 038802 127 -PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV---VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 127 -~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
....+......-..++. .+++...+..|+-+.+-|+.+... +.... ....+.++..++ +..+++. .+--
T Consensus 162 ~lagrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsd-nr~y~vv--y~eg 234 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSD-NRAYLVV--YDEG 234 (370)
T ss_pred eeeeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecC-CeeEEEE--cccc
Confidence 33444444554566766 466778888999999999976532 22222 223677777766 4444443 3445
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEE-EEecCCCEEEEEc-CCeEEEEEccCCCeee--EEccCCCcceEEEEEeccCCC
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDV-MFLPSGGLIATAG-GNSVKIWDLIGGGKMV--YSMESHNKTVTSVCVGRVGNE 278 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 278 (532)
+.+-|....+....+..-....+.++ .+.-.+++...+. +..+.+-|+.+...+. ..+......-..+..+
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay----- 309 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY----- 309 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe-----
Confidence 77888877655444433223333333 2222455555554 5556666665432221 1111111122233322
Q ss_pred CCccccccEEEEEecCCeEEEEECCCceEEEeee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
+.++..+..+ ...+-+...-+...... ....+.+.+.+-+.+.+.+...+|.+.+|+..
T Consensus 310 ------~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 310 ------GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ------cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 2233333333 33333333221111111 12234555566666788899999999999863
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.27 Score=44.51 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=101.9
Q ss_pred cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEecc--CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 038802 132 KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF--GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209 (532)
Q Consensus 132 ~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 209 (532)
.+-...+.++.|+| +.+.|++......-.+|=..+|+.+.++. +.. ..-.+.+.. ++.++++--.++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 45556699999999 66677777766666676666788887763 222 233577776 67777776678888887765
Q ss_pred cCCcee-----EEE---ecC-CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCee--eEEccCC-------CcceEEE
Q 038802 210 VENSKS-----VME---VNH-GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKM--VYSMESH-------NKTVTSV 270 (532)
Q Consensus 210 ~~~~~~-----~~~---~~~-~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~--~~~~~~~-------~~~i~~~ 270 (532)
...... .+. ..+ +.....++|+|.+..+..+- -+-+.||........ ......+ -..+.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 432221 111 123 67789999999888888777 444555554322111 1111111 1245666
Q ss_pred EEeccCCCCCccccccEEEEEecCCeEEEEECCCc
Q 038802 271 CVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKM 305 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 305 (532)
.|.+.. +.+++-+..++.+.-.|....
T Consensus 239 ~~~~~~--------~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAIT--------NSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCC--------CcEEEEecCCceEEEEecCCC
Confidence 776654 677888888888887776543
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.89 E-value=0.5 Score=46.20 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=57.6
Q ss_pred CCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC----------CccccccEEEE
Q 038802 222 GKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES----------GEEAMQYRILS 290 (532)
Q Consensus 222 ~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~l~s 290 (532)
...+.+++.+|++++.++.. -|.|.++|+.++ ..+...++....-..-......... .......+++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45578999999999888876 489999999887 6677776655432111111111000 00011234555
Q ss_pred EecCCeEEEEECCCceEEEeee
Q 038802 291 VALDGYMKVFDYGKMKVTHSMR 312 (532)
Q Consensus 291 ~~~dg~i~iwd~~~~~~~~~~~ 312 (532)
+-.-|.|.||+++++..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678999999999988877665
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.012 Score=61.98 Aligned_cols=188 Identities=17% Similarity=0.128 Sum_probs=115.2
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce----------------EEEEeeccC-ceeEEEEEccCCCEEEEE--cC
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLE----------------KHSAISSFK-DVVTCSSFRPDGSLLAAS--DL 113 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~----------------~~~~~~~~~-~~v~~~~~~~~~~~l~~g--~~ 113 (532)
.-+.++.++.-..+++++..+.+.++-..+.- ....+.-|. -++..+...+|+...++. +.
T Consensus 43 ~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn 122 (1405)
T KOG3630|consen 43 SSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN 122 (1405)
T ss_pred hhhhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC
Confidence 33456666666667777777766665432211 012222222 345555666777665543 33
Q ss_pred CCCEEEEECCCCce-----EEEecC------CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceE
Q 038802 114 SGLIQVFDVKSRTP-----LRRLKS------HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVR 182 (532)
Q Consensus 114 dg~i~iwd~~~~~~-----~~~~~~------h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 182 (532)
+-.|..||+.+-.. ..-+.. ......++.|+|.-....+.+..|+.|++..+........-.......+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~T 202 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQT 202 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCccccee
Confidence 34788999865321 111111 2234567889886566678888999999987764333222234566789
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeE--EEecCCCcEEEEEEecCCCEEEEEc
Q 038802 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSV--MEVNHGKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 183 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~ 241 (532)
|++|+| .|..++.|-..|++.-|-..-.....+ -.......|.+++|-....+++.-+
T Consensus 203 av~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 203 AVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEecc-ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999999 999999999999999887543211111 1112256899999998877777655
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0054 Score=39.02 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=30.3
Q ss_pred ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce
Q 038802 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE 84 (532)
Q Consensus 49 ~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~ 84 (532)
.....|.+++|+|...++|.++.+|.|.+|.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34557999999999999999999999999998 444
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.74 E-value=0.65 Score=45.42 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=59.7
Q ss_pred EEEEccCCCEEEEEcCCCCEEE---EECCC-----CceEEEecC---CC--CCEEEEEeecC----------CCcEEEEE
Q 038802 98 CSSFRPDGSLLAASDLSGLIQV---FDVKS-----RTPLRRLKS---HT--RPVRFVKYPFL----------DKLHLVSG 154 (532)
Q Consensus 98 ~~~~~~~~~~l~~g~~dg~i~i---wd~~~-----~~~~~~~~~---h~--~~i~~~~~~~~----------~~~~l~s~ 154 (532)
.++.+|++++||.+..+..+.+ |+... +.......+ +. ..|+++.|-|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999876665554 54311 112222211 21 46777777542 46789999
Q ss_pred eCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 155 GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 155 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
..+|.|++|.. +|..+..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999996 5666665566888888887753
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.74 E-value=0.0057 Score=38.89 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=29.9
Q ss_pred ecCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 312 RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 312 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
..+..|.+++|+|....+|.|+.+|.|.+++++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 355689999999999999999999999999984
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.66 E-value=0.11 Score=51.56 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred ceeEEEEEccCCCEEEEEc---CCCCEEEEECCCCceEEEecCCCCCEEEEEeecC---CCcEEEEEeCCCeEEEEECC-
Q 038802 94 DVVTCSSFRPDGSLLAASD---LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFL---DKLHLVSGGDDGIVKFWDVA- 166 (532)
Q Consensus 94 ~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~---~~~~l~s~s~dg~i~iwd~~- 166 (532)
.++..++|. ||+.++-.. .+|.+++=| ...+..| ..|..+.|.|. +...+++......|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578889997 666555332 234333322 1233333 34788999873 23356666778899999875
Q ss_pred ----CCeEEEeccC-----CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEE
Q 038802 167 ----GESVVLDLFG-----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLI 237 (532)
Q Consensus 167 ----~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 237 (532)
.++.+..... ..---..+.|+| ....|+.-.....-.+++++.........+...+-|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2222221111 111123577999 777777666655556777776666666666788899999999999988
Q ss_pred EEEcCC--eEEEEEc
Q 038802 238 ATAGGN--SVKIWDL 250 (532)
Q Consensus 238 ~~~~d~--~i~iwd~ 250 (532)
+.+-+. .-++||-
T Consensus 171 VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEeCCeEEEEEecC
Confidence 877654 4678884
No 407
>PHA03098 kelch-like protein; Provisional
Probab=96.63 E-value=0.21 Score=51.75 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=89.7
Q ss_pred CCCeEEEEEeC------CeEEEEeCCCceEEEEeecc--CceeEEEEEccCCCEEEEEcCC-----CCEEEEECCCCceE
Q 038802 62 TTSHLFAATHS------ASLTLFSSQTLEKHSAISSF--KDVVTCSSFRPDGSLLAASDLS-----GLIQVFDVKSRTPL 128 (532)
Q Consensus 62 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~ 128 (532)
++..++.|+.+ ..+..||..+.+-...-... ......+ .-+++..+.||.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 44455666543 25778887765543221111 1112222 2367778888765 34777887765432
Q ss_pred EEecC-CCCCEEEEEeecCCCcEEEEEeCC------CeEEEEECCCCeEEEe--ccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 129 RRLKS-HTRPVRFVKYPFLDKLHLVSGGDD------GIVKFWDVAGESVVLD--LFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 129 ~~~~~-h~~~i~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
..-.. +...-.+++.. ++...+.||.+ ..+..||..+.+-... +...... .++... ++.+++.|+.
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~ 446 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGI 446 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCc
Confidence 21110 11111122222 66777777732 4588899876543221 1111111 122222 5667777765
Q ss_pred CC--------eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C-----CeEEEEEccCC
Q 038802 200 DH--------TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G-----NSVKIWDLIGG 253 (532)
Q Consensus 200 dg--------~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d-----~~i~iwd~~~~ 253 (532)
++ .+.+||..+.+-...........-.+++. -++.+++.|+ + +.+.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 32 38888987654332222111111112222 2667777766 3 36788887654
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.58 E-value=0.74 Score=49.10 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCeEEEEEeCCeEEEEeCCCceEEEEeeccCce--------eEEEEEcc----------------CCCEEEEEcCCCCEE
Q 038802 63 TSHLFAATHSASLTLFSSQTLEKHSAISSFKDV--------VTCSSFRP----------------DGSLLAASDLSGLIQ 118 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~g~~dg~i~ 118 (532)
+..+++++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446788888899999999999988877543211 11233321 344788888899999
Q ss_pred EEECCCCceEEEecCCCCCEE-------------EEEeecC-CCcEEEEEeC----------CCeEEEEECCCCeEEEec
Q 038802 119 VFDVKSRTPLRRLKSHTRPVR-------------FVKYPFL-DKLHLVSGGD----------DGIVKFWDVAGESVVLDL 174 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~i~-------------~~~~~~~-~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~ 174 (532)
-.|.++|+.+..+.. .+.|. .+.-.|. .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 22211 0000010 1334566642 688999999999998876
Q ss_pred c
Q 038802 175 F 175 (532)
Q Consensus 175 ~ 175 (532)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.51 E-value=0.3 Score=50.50 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=71.9
Q ss_pred cCCCEEEEEcCCC------CEEEEECCCCceEEEecC--CCCCEEEEEeecCCCcEEEEEeCC-----CeEEEEECCCCe
Q 038802 103 PDGSLLAASDLSG------LIQVFDVKSRTPLRRLKS--HTRPVRFVKYPFLDKLHLVSGGDD-----GIVKFWDVAGES 169 (532)
Q Consensus 103 ~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 169 (532)
.++..++.|+.++ .+..||..+.+....-.. .......+.+ ++..++.||.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566777776543 577888876654321111 1111222222 67777788765 347778877654
Q ss_pred EEEeccC-CCCceEEEEEeCCCCCEEEEEeCC------CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-
Q 038802 170 VVLDLFG-HKDYVRCGDCSPVNGDMFVTGSYD------HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG- 241 (532)
Q Consensus 170 ~~~~~~~-~~~~v~~i~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~- 241 (532)
-...-.. +...-.+++.. ++.+.+.|+.+ ..+..||+.+.+-...........-.+++. .++.+++.|+
T Consensus 370 W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 446 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGI 446 (534)
T ss_pred eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCc
Confidence 3221110 11111122222 56777777742 358889987643322211111111122222 3566666665
Q ss_pred CC--------eEEEEEccCC
Q 038802 242 GN--------SVKIWDLIGG 253 (532)
Q Consensus 242 d~--------~i~iwd~~~~ 253 (532)
++ .+.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred cCCCCCcccceEEEecCCCC
Confidence 21 3788887754
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.47 E-value=1.5 Score=46.94 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=125.1
Q ss_pred CCEEEEEcCCCCEEEEECCCCceEEEecCCCCC--------EEEEEeec---------------CCCcEEEEEeCCCeEE
Q 038802 105 GSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRP--------VRFVKYPF---------------LDKLHLVSGGDDGIVK 161 (532)
Q Consensus 105 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--------i~~~~~~~---------------~~~~~l~s~s~dg~i~ 161 (532)
+..++.++.++.|.-.|..+|+.+.++...... ...+.+.. .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788899999999999988877632211 12233321 0234788899999999
Q ss_pred EEECCCCeEEEeccCCCCceE-------------EEEEeCC-CCCEEEEEeC----------CCeEEEEEcccCCceeEE
Q 038802 162 FWDVAGESVVLDLFGHKDYVR-------------CGDCSPV-NGDMFVTGSY----------DHTVKLWDVRVENSKSVM 217 (532)
Q Consensus 162 iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~~-~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~ 217 (532)
-.|.++|+.+..+.. .+.|. .+.-.|. .++.+++|+. +|.|+-+|.++++..-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 11110 0111110 1345666643 688999999997765554
Q ss_pred EecCCCcEEEEEEecCCCEEEEEcCC--eEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCC
Q 038802 218 EVNHGKPIEDVMFLPSGGLIATAGGN--SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDG 295 (532)
Q Consensus 218 ~~~~~~~v~~i~~~~~~~~l~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg 295 (532)
....... .. ..+.+.....++.+ ...-+|...+ .+..-.+...+ .+... ..........+
T Consensus 353 ~~g~p~~-~~--~~~~g~~~~~gg~n~W~~~s~D~~~g--lvy~ptGn~~p----d~~g~---------~r~~~~n~y~~ 414 (764)
T TIGR03074 353 DPGNPDP-TA--PPAPGETYTRNTPNSWSVASYDEKLG--LVYLPMGNQTP----DQWGG---------DRTPADEKYSS 414 (764)
T ss_pred ecCCCCc-cc--CCCCCCEeccCCCCccCceEEcCCCC--eEEEeCCCccc----cccCC---------ccccCcccccc
Confidence 4322111 10 01133333323221 3445554443 12211111110 00000 00000112256
Q ss_pred eEEEEECCCceEEEeeec-CCC---------eeEEEEec-CCC---EEEEEecCCcEEEEeecCccccc
Q 038802 296 YMKVFDYGKMKVTHSMRF-PAP---------LMSVAFSP-DCM---TRVIGTSNGTIFAGRRKKKENVE 350 (532)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~-~~~---------v~~~~~s~-~~~---~l~~g~~dg~i~iw~~~~~~~~~ 350 (532)
.|.-.|.++++....++. +.. ..-+.+.. +|+ .++.++.+|.+++.|..+++.+-
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 677788888888877762 221 12223333 563 79999999999999999987663
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=96.40 E-value=0.98 Score=43.36 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=86.0
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEE-ECCCCceEE-EecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeE
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVF-DVKSRTPLR-RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV 170 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iw-d~~~~~~~~-~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 170 (532)
...+.++.+.|++.++++|. .|.+..- + ..++.-. ....-...++++.+.+ ++..+++ +..|.+.+=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCc
Confidence 45788999999988777765 5654432 2 2222222 2223456788999988 6665554 4567765433444433
Q ss_pred EEeccC----CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEE--ecCCCcEEEEEEecCCCEEEEEcCCe
Q 038802 171 VLDLFG----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME--VNHGKPIEDVMFLPSGGLIATAGGNS 244 (532)
Q Consensus 171 ~~~~~~----~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~d~~ 244 (532)
-..... ....+.++.+.+ ++..+++ +.+|.+.. ....++.-.... ..-......+.|..+++.++++..|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred cccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 222211 123467888888 6665554 45675543 333222111111 11224578888888888888888888
Q ss_pred EEEEE
Q 038802 245 VKIWD 249 (532)
Q Consensus 245 i~iwd 249 (532)
|--|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 87776
No 412
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.77 Score=41.43 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=132.3
Q ss_pred eEEEEEccCC-CEEEEEcCCCC-EEEEECCCCceEEEecCCCCC--EEEEEeecCCCcEEEEEeCC-----CeEEEEECC
Q 038802 96 VTCSSFRPDG-SLLAASDLSGL-IQVFDVKSRTPLRRLKSHTRP--VRFVKYPFLDKLHLVSGGDD-----GIVKFWDVA 166 (532)
Q Consensus 96 v~~~~~~~~~-~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~~--i~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~ 166 (532)
...++|+|.. .-++.+-.-|+ ..++|....+....+...++. --.-.|+| ++.+|+..-.| |.|-+||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 3456677743 34455555554 567888776655444321111 01124898 88888776544 789999987
Q ss_pred CC-eEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEE--------------------EcccCCceeEEEec---CC
Q 038802 167 GE-SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW--------------------DVRVENSKSVMEVN---HG 222 (532)
Q Consensus 167 ~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw--------------------d~~~~~~~~~~~~~---~~ 222 (532)
.+ +.+..+..|.-.-..+.+.+ |+..++.+. |-|... |..++......... +.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred cccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 54 34556677776677888998 999888764 334333 22222222222221 33
Q ss_pred CcEEEEEEecCCCEEEEEc-CC----eEEEEEccCCCeeeEEccC-------CCcceEEEEEeccCCCCCccccccEEEE
Q 038802 223 KPIEDVMFLPSGGLIATAG-GN----SVKIWDLIGGGKMVYSMES-------HNKTVTSVCVGRVGNESGEEAMQYRILS 290 (532)
Q Consensus 223 ~~v~~i~~~~~~~~l~~~~-d~----~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~l~s 290 (532)
-+|..++..++|+.++.+. .| .--+--....++++..+.. ....|-+++.+.+. +...+|
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~--------glV~lT 297 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD--------GLVALT 297 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC--------CeEEEe
Confidence 4577788888887777664 22 1111111112233333221 12346667776552 344455
Q ss_pred EecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeec
Q 038802 291 VALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRK 344 (532)
Q Consensus 291 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 344 (532)
+-..+..-+||..++.++....... +.-.-+...-+++.+.+|.+.++...
T Consensus 298 SP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 298 SPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred cCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEecccc
Confidence 5555678899999999887654221 12233444557777888999888443
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.27 E-value=0.23 Score=43.22 Aligned_cols=144 Identities=11% Similarity=0.076 Sum_probs=89.2
Q ss_pred ccCeeEEEEcCCCCeEEEEEeC----------CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEE-EcCCCCEEE
Q 038802 51 VSSINSIVFSPTTSHLFAATHS----------ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAA-SDLSGLIQV 119 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~i~i 119 (532)
....+.-..+|+|++ ..|+.. |.++.|-.. ..+..+...-+--+.++|+.+.+.+.. -+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 455667778899987 444432 334444322 222222222344567889888776664 455667877
Q ss_pred EE--CCCCc-----eEEEecC---CC-CCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeC
Q 038802 120 FD--VKSRT-----PLRRLKS---HT-RPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSP 188 (532)
Q Consensus 120 wd--~~~~~-----~~~~~~~---h~-~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 188 (532)
|| ..+|. .+..++. .. ...-.++... ++++.+++-..++|...|..+|+.+..+.-....|+|++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 87 44443 2222221 01 1112234444 788888888889999999999999999988899999999975
Q ss_pred CCCCEEEEEe
Q 038802 189 VNGDMFVTGS 198 (532)
Q Consensus 189 ~~~~~l~s~s 198 (532)
.+-+.+++..
T Consensus 264 kn~d~~yvT~ 273 (310)
T KOG4499|consen 264 KNLDILYVTT 273 (310)
T ss_pred CCccEEEEEe
Confidence 3445555443
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.26 E-value=1 Score=42.14 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=124.1
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe--ecc---CceeEEEEEccCCCEEEEEcCCCCEEEEECCCC
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAI--SSF---KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR 125 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 125 (532)
..++.+|.|..+..-+++ +..+.|.- ..+.|+.-... ... .-...++.|.. ...+++|. .| +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG~-~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-GAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVGE-PG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-ETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEEEE-TT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEE-ecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEEcC-Cc-eEEEecCCC
Confidence 348899999955544444 44564422 22222221111 111 12456777754 34445553 44 334444444
Q ss_pred ceEEEec---CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEE-EeccCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 126 TPLRRLK---SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV-LDLFGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 126 ~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
+.-..+. .-.+....+.... ++ ....++..|.|+.= .+.++.- .....-...+..+..++ ++.++++++...
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGN 166 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSS
T ss_pred CCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECccc
Confidence 4333322 1223334444433 33 33434455654432 2333221 12234456788888888 899888887766
Q ss_pred eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCee----eEEccCCCcceEEEEEeccCC
Q 038802 202 TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKM----VYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~ 277 (532)
...-||.-...- ..........|.+|.|.|++.+.+.+.+|.|++=+....... +..+....-.+..+++.++
T Consensus 167 ~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~-- 243 (302)
T PF14870_consen 167 FYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP-- 243 (302)
T ss_dssp EEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS--
T ss_pred EEEEecCCCccc-eEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC--
Confidence 667787543222 233335678999999999999888878888888873222111 1112222334788899876
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCceEEEeee----cCCCeeEEEEecCCCEEEEEecCCcEEEE
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR----FPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 341 (532)
.. +.+++..|.+ +...+.++.=...+ .+..++.+.|.++.+-++ -+.+|.|.-|
T Consensus 244 -------~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 244 -------NE-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -------S--EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred -------CC-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 34 4445555644 33444444322222 456788999987655554 4567776544
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.23 E-value=0.48 Score=47.18 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=90.3
Q ss_pred CCCEEEEEeecCCCcEEE-EEe--CCCeEEEEECCCCeEEEeccCCCCceEEEEEeCC---CCCEEEEEeCCCeEEEEEc
Q 038802 135 TRPVRFVKYPFLDKLHLV-SGG--DDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPV---NGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 135 ~~~i~~~~~~~~~~~~l~-s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~s~s~dg~i~iwd~ 208 (532)
-.++..++|. ||+.++ +.- .+|.+++=| ...+ +.-..|..+.|.|. +..-+++......|.+|.+
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3578889997 555444 322 233333322 1222 23345888999983 1223444455678999987
Q ss_pred cc-----CCceeEEEecC--CCcE--EEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCC
Q 038802 209 RV-----ENSKSVMEVNH--GKPI--EDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNE 278 (532)
Q Consensus 209 ~~-----~~~~~~~~~~~--~~~v--~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (532)
.. .+......... .-+| ..+.|+|...+|+.-. .+.-.+++++.....+..--...+-|.|.||.+||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG-- 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG-- 167 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC--
Confidence 52 12222222122 2222 4678999999888777 44445666665444444333567889999999997
Q ss_pred CCccccccEEEEEecCCeEEEEECCC
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
.+++++.+..=.-++||-..
T Consensus 168 ------~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 ------QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ------CEEEEEeCCeEEEEEecCch
Confidence 45666666666788998543
No 416
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=96.19 E-value=0.015 Score=46.07 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=68.2
Q ss_pred CcccccchhHHHhhcccchHHHHHHhhCCC-----CC-------hhHHHHHHHHHhhchHHHHhcCCChHhHHHHHHHHH
Q 038802 394 RPKKLKLGEHDKLLKKFRHKEALVSVLNGK-----NP-------ENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQ 461 (532)
Q Consensus 394 ~~~~~k~~~~~~~l~~~~~~~al~~al~~~-----~~-------~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ll~~~~ 461 (532)
..-..+..+.+.+|++++..+||..||..- .+ ..++.+|..+. ...|+.++..++.++...|++||.
T Consensus 33 a~~gp~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~ik-~adI~~~v~~Ls~e~~DiLmKYiY 111 (152)
T KOG3380|consen 33 AALGPDEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTSIK-QADIEAAVKKLSTEEIDILMKYIY 111 (152)
T ss_pred hccCCChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhHHHHHHHHHHHH
Confidence 344567888999999999999999999742 11 12233333332 268999999999999999999999
Q ss_pred hccCCCC---chHHHHHHHHHHHHhcc
Q 038802 462 KHSTVPR---YSGLLIGLMEKVLEMRA 485 (532)
Q Consensus 462 ~~~~~~~---~~~~~~~~~~~il~~~~ 485 (532)
+-+.+|. .+..++.|-+.++...|
T Consensus 112 kGm~~p~d~~s~~~LL~WHEk~~~~~G 138 (152)
T KOG3380|consen 112 KGMEIPSDNSSCVSLLQWHEKLVAKSG 138 (152)
T ss_pred HHhcCccccchHHHHHHHHHHHHHhcC
Confidence 9998653 44457788888887755
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=96.14 E-value=0.58 Score=47.53 Aligned_cols=181 Identities=7% Similarity=0.038 Sum_probs=87.7
Q ss_pred CCeEEEEEeC-----CeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCC--CCEEEEECCCCceEE--EecC
Q 038802 63 TSHLFAATHS-----ASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLS--GLIQVFDVKSRTPLR--RLKS 133 (532)
Q Consensus 63 ~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~--~~~~ 133 (532)
+..+++|+.+ ..+..||..+..-...-.............-++...+.|+.+ ..+..||..+++-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 4455666643 257778877654322211111111111122477777888754 357888876543322 1211
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCC---eEEEEECCCCeEEEe--ccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDG---IVKFWDVAGESVVLD--LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
.......+.+ ++...+.||.++ .+..||..+.+-... +...... .+++. - ++.+.+.|+ .+.+||.
T Consensus 352 ~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~-~-~~~IYv~GG---~~e~ydp 422 (480)
T PHA02790 352 PRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV-F-GRRLFLVGR---NAEFYCE 422 (480)
T ss_pred CCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE-E-CCEEEEECC---ceEEecC
Confidence 1111122222 677778877654 467888876543221 1111111 12222 2 566666663 5778988
Q ss_pred ccCCceeEEEecCCCcEEEEEEecCCCEEEEEc-C-----CeEEEEEccCC
Q 038802 209 RVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG-G-----NSVKIWDLIGG 253 (532)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d-----~~i~iwd~~~~ 253 (532)
++.+-...........-.+++. -+|++.+.|+ + ..+..||..++
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7654433322222222222333 2667777776 3 24667776544
No 418
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.63 Score=46.13 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=135.7
Q ss_pred cccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccC-ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceE
Q 038802 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK-DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPL 128 (532)
Q Consensus 50 h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 128 (532)
-..+|.++.+...|. +.+|+.+| +..||..+++..+.-.... .+|..+.-+-.| .+.+|+.+| |.+.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 345788888988884 77788877 6677888887776554433 566666655555 477787666 777776542222
Q ss_pred EEec-CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC--CCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 129 RRLK-SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH--KDYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 129 ~~~~-~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
.... -..+.|..+.-. ....+-.|+..|-.+.---+.+-.......| -..|.++.... +++ +-+++++|.+++
T Consensus 239 n~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGs-LWv~t~~giv~~ 314 (671)
T COG3292 239 NWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGS-LWVGTYGGIVRY 314 (671)
T ss_pred ccCCCCcchheeeeecc--cCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc-CCC-EeeeccCceEEE
Confidence 1111 123444444333 3345677777665443222222112122222 23344454443 444 566677776665
Q ss_pred EEcccCCceeEEEecCCCcEEEEEEec---CCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 206 WDVRVENSKSVMEVNHGKPIEDVMFLP---SGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
-+-.- .....+....+..+...+..| +.......+.|.+.+-+-.++.........-...|+..++...
T Consensus 315 ~~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~------- 386 (671)
T COG3292 315 LTADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSR------- 386 (671)
T ss_pred ecchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccC-------
Confidence 43221 111111111111122222222 1111111112223333323331111112222234555555543
Q ss_pred ccccEEEEEecCCeEEEEECCC-ceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEE
Q 038802 283 AMQYRILSVALDGYMKVFDYGK-MKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFA 340 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~i 340 (532)
..+..|+...-+..|+.++ +....... ..++|.++.=.|+++ |..|+.+|.++.
T Consensus 387 ---g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 387 ---GRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ---CcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 3466666665566677666 44433333 446788888888888 788999987654
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.07 E-value=1.1 Score=40.64 Aligned_cols=181 Identities=10% Similarity=0.036 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCeEEEEEeCC--eEEEEeCCCceEEEEeeccCc-eeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 54 INSIVFSPTTSHLFAATHSA--SLTLFSSQTLEKHSAISSFKD-VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 54 V~~i~~sp~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++.. +++.....-.++...+||..+.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45677867776666655544 899999999987766543221 11223332 334444556689999999999988888
Q ss_pred ecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCC--C---CceEEEEEeCCCCCEEEEEeCCCeEEE
Q 038802 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH--K---DYVRCGDCSPVNGDMFVTGSYDHTVKL 205 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~~l~s~s~dg~i~i 205 (532)
+.- .+.-+.++. ++..|+.......+.++|..+.+....+... . ..++-+.|. +|...|-.=....|..
T Consensus 126 ~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred Eec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence 763 455677774 6667777777889999999887766655321 1 234556665 4555555545556777
Q ss_pred EEcccCCceeEEEec--------------CCCcEEEEEEecCCCEEEEEc
Q 038802 206 WDVRVENSKSVMEVN--------------HGKPIEDVMFLPSGGLIATAG 241 (532)
Q Consensus 206 wd~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~l~~~~ 241 (532)
.|..++.....+... ...-.+.|++.|....+...+
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 777776555444321 134578999998666544444
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.02 E-value=0.88 Score=44.61 Aligned_cols=152 Identities=15% Similarity=0.194 Sum_probs=101.0
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCce---eEEEecCCCcEEEEEEec-----CCCEEEEEcCCeEEEEEccCCC-e-----
Q 038802 190 NGDMFVTGSYDHTVKLWDVRVENSK---SVMEVNHGKPIEDVMFLP-----SGGLIATAGGNSVKIWDLIGGG-K----- 255 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~-----~~~~l~~~~d~~i~iwd~~~~~-~----- 255 (532)
+.+.+++||..|.++||+....... ..+...-..||..+..-+ +...||.-.-..+.||.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4578999999999999998654322 344556678888887543 3346777777888999884211 1
Q ss_pred --eeEEccCC--CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEE
Q 038802 256 --MVYSMESH--NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVI 331 (532)
Q Consensus 256 --~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 331 (532)
.+.....| ......+++-|-|.. ....+++.-+.||.+.+|+-+.....+.+..---...+.+.+.-..+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~----~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGV----KGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCC----CCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 11222222 234455666665432 1147899999999999999877655444442112234568888889999
Q ss_pred EecCCcEEEEeecC
Q 038802 332 GTSNGTIFAGRRKK 345 (532)
Q Consensus 332 g~~dg~i~iw~~~~ 345 (532)
++++..+..|+...
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 99999999998854
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=95.97 E-value=0.82 Score=46.43 Aligned_cols=141 Identities=10% Similarity=-0.046 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCC-----CEEEEECCCCceEEE--ecCCCCCEEEEEeecCCCcEEEEEeCC--CeEEEEECCCCeEEEec
Q 038802 104 DGSLLAASDLSG-----LIQVFDVKSRTPLRR--LKSHTRPVRFVKYPFLDKLHLVSGGDD--GIVKFWDVAGESVVLDL 174 (532)
Q Consensus 104 ~~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h~~~i~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~ 174 (532)
++.++++|+.++ ++..||..+++.... +.........+.. ++...+.||.+ ..+..||..+++-.. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~---~~~iYviGG~~~~~sve~ydp~~n~W~~-~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA---NNKLYVVGGLPNPTSVERWFHGDAAWVN-M 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE---CCEEEEECCcCCCCceEEEECCCCeEEE-C
Confidence 456667777543 466788776543322 1111111122222 67777777754 357788876553322 1
Q ss_pred cCCCCce--EEEEEeCCCCCEEEEEeCCC---eEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEE
Q 038802 175 FGHKDYV--RCGDCSPVNGDMFVTGSYDH---TVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWD 249 (532)
Q Consensus 175 ~~~~~~v--~~i~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd 249 (532)
..-..+. .+++.. ++.+.+.|+.++ .+..||.++..-...........-.+++ .-+|.+.+.|+ .+.+||
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG--~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR--NAEFYC 421 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC--ceEEec
Confidence 1111111 122222 677778887654 4677887764332221111111111222 23566666553 467788
Q ss_pred ccCC
Q 038802 250 LIGG 253 (532)
Q Consensus 250 ~~~~ 253 (532)
..++
T Consensus 422 p~~~ 425 (480)
T PHA02790 422 ESSN 425 (480)
T ss_pred CCCC
Confidence 7654
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=95.95 E-value=1.7 Score=41.80 Aligned_cols=268 Identities=13% Similarity=0.067 Sum_probs=131.0
Q ss_pred ccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEee----ccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC-C
Q 038802 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS----SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS-R 125 (532)
Q Consensus 51 ~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~ 125 (532)
...+.+|.|.....-+++|. +|.|..= .+.|+.-.... .....+.++.|.++ ..+++| ..|.| |...+ +
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceE--EEECCCC
Confidence 55789999986555555554 5544331 12222211111 11234677888643 344444 44543 33322 2
Q ss_pred ceEEEec---CCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec-cCCCCceEEEEEeCCCCCEEEEEeCCC
Q 038802 126 TPLRRLK---SHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL-FGHKDYVRCGDCSPVNGDMFVTGSYDH 201 (532)
Q Consensus 126 ~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg 201 (532)
+.-..+. ...+....+.... .+. +..++..|.|..=+ +.++.-..+ ..-...+.++.+.| ++.+++++ ..|
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~-~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~v~~g-~~G 193 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALG-PGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKYVAVS-SRG 193 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEEC-CCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeEEEEe-CCc
Confidence 2222211 0111112222221 222 33344455443322 233322222 22245688889888 66666554 456
Q ss_pred eEEE-EEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccC----CCcceEEEEEeccC
Q 038802 202 TVKL-WDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMES----HNKTVTSVCVGRVG 276 (532)
Q Consensus 202 ~i~i-wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~~~~~ 276 (532)
.+.. +|-. ++.-..........+.++.+.++++.++++..|.+.+=+...+ ..-..... ....+.++.+.++
T Consensus 194 ~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~- 270 (334)
T PRK13684 194 NFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTP- 270 (334)
T ss_pred eEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC-CccccccCCccccccceeeEEEcCC-
Confidence 5543 2211 1111122234567889999999999888877777653222222 21111111 1234677888776
Q ss_pred CCCCccccccEEEEEecCCeEEEEECCCceEEEee----ecCCCeeEEEEecCCCEEEEEecCCcEEEEee
Q 038802 277 NESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM----RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRR 343 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~ 343 (532)
+. ++.++.+|.+.. ....++.-... ..+...+.+.|..+++.++ .+..|.|.-|+-
T Consensus 271 --------~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 271 --------GE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred --------CC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 33 556666776653 33433322222 1234577888877666554 566788877653
No 423
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.86 E-value=0.69 Score=36.77 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=74.3
Q ss_pred eEEEEcCCCCeEEEEEeCCeEEEEeCCCce--------EEEEeeccCceeEEEEEcc-----CCCEEEEEcCCCCEEEEE
Q 038802 55 NSIVFSPTTSHLFAATHSASLTLFSSQTLE--------KHSAISSFKDVVTCSSFRP-----DGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd 121 (532)
..-.|....+.|++++..|.|.|++..... .+..+ ..+..|++++-.+ +...|+.|+ ...+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 345677777889999999999999876432 22222 2356777775443 356788887 56799999
Q ss_pred CCCCceEEEecCCCCCEEEEEeecC--CCcEEEEEeCCCeEEEEECCCCeEEEec
Q 038802 122 VKSRTPLRRLKSHTRPVRFVKYPFL--DKLHLVSGGDDGIVKFWDVAGESVVLDL 174 (532)
Q Consensus 122 ~~~~~~~~~~~~h~~~i~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 174 (532)
+....-+.. +.-...|.++.+-.. ...-++..+.+..|.-||.+..+...+.
T Consensus 80 V~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 987654432 233466777776321 1233555555677888887766655443
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.82 E-value=0.011 Score=60.85 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=121.9
Q ss_pred CCCEEEEECCCCc-eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCC--CeE-----EEeccCCCCceEEEE
Q 038802 114 SGLIQVFDVKSRT-PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG--ESV-----VLDLFGHKDYVRCGD 185 (532)
Q Consensus 114 dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~-----~~~~~~~~~~v~~i~ 185 (532)
.+-+++-+..+.- .-..+++..+.+-.+.|...+...+. -.-|.+.+||+.- |+. +.....-..++.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4556666654321 11234567788888888543333333 3347788998752 322 222233334445566
Q ss_pred EeCC--CCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEE-----------EEecCCCEEEEEc-CCeEEEEEcc
Q 038802 186 CSPV--NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDV-----------MFLPSGGLIATAG-GNSVKIWDLI 251 (532)
Q Consensus 186 ~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i-----------~~~~~~~~l~~~~-d~~i~iwd~~ 251 (532)
|.|. +.-++..+-.+++|++........ .+...|...+..+ ..+|||+.++++. ||.++.|-+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 6652 446777777888888877654322 1111354444332 3689999999888 9988887754
Q ss_pred CCC----eeeEEccCCCc-ceEEEEEeccCCCCCccccccEEEEEec-CCeEEEEECCCceEEEeeecCCCeeEEEEecC
Q 038802 252 GGG----KMVYSMESHNK-TVTSVCVGRVGNESGEEAMQYRILSVAL-DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPD 325 (532)
Q Consensus 252 ~~~----~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 325 (532)
-.+ .+....+.|.+ +-.|..+............-.++++++. +..+++|....++|.-.+ ....|..+. -+|
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~-~~d~v~iV~-p~~ 343 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK-LIDGVQIVG-PHD 343 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh-cccceEeec-CCC
Confidence 222 45566677763 3223223322111111122234444443 456999998888876111 223334333 223
Q ss_pred CC------------EEEEEecCCcEEEEeecC
Q 038802 326 CM------------TRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 326 ~~------------~l~~g~~dg~i~iw~~~~ 345 (532)
|. .++.-+.+|.|.+|.-..
T Consensus 344 ~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 344 GEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 22 123445677788886554
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.80 E-value=3.2 Score=44.01 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=55.0
Q ss_pred ceeEEEEEccCCCEEEEEcCCCCEEEEECCCC-ceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 038802 94 DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSR-TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172 (532)
Q Consensus 94 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 172 (532)
-.|..+.++|+|+++|..|..| |.|..+... .....+.+....|.|=.+.- +.. ++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~-~~-------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPV-DER-FF-------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEe-chh-hc--------------------
Confidence 3688889999999999888655 555554321 11112222223333322211 111 11
Q ss_pred eccCCCCceEEEEEeCC--CCCEEEEEeCCCeEEEEEcccC
Q 038802 173 DLFGHKDYVRCGDCSPV--NGDMFVTGSYDHTVKLWDVRVE 211 (532)
Q Consensus 173 ~~~~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~ 211 (532)
...+...|..+.|+|. ++..|+.-+.|+++++||+...
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456778888884 2578888888999999998653
No 426
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.77 E-value=2.2 Score=41.77 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCCeEEEEEeCCeEEEEeCCCceEEEEeeccC--ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCC-CCE
Q 038802 62 TTSHLFAATHSASLTLFSSQTLEKHSAISSFK--DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHT-RPV 138 (532)
Q Consensus 62 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~i 138 (532)
++ .+.+++.+|.|.-.|..++..+.....-. ..+.+-.+..+|+ ++.++.+|.++.+|..+++.+....... ..+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 46666788888888988888664333221 2333333333675 7778889999999998899888877555 111
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCC---CceEEEEEeCCCCCEEEEEeC--CCeEEEEEcccCCc
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHK---DYVRCGDCSPVNGDMFVTGSY--DHTVKLWDVRVENS 213 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~ 213 (532)
..-... ....++.++.++.+...|..+++......... ..+..--. . ....++.+.. ++.+.-.|..++..
T Consensus 146 ~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 146 ASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred ecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEccCCcE
Confidence 111111 23334455578999999988888766643321 11111001 1 2344555555 55566666665544
Q ss_pred eeEEEecCCCc---------EEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccC
Q 038802 214 KSVMEVNHGKP---------IEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMES 262 (532)
Q Consensus 214 ~~~~~~~~~~~---------v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~ 262 (532)
.-.....+... +..-...-++.....+.++.+...|..++ +.+.....
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G-~~~W~~~~ 278 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG-ELIWSFPA 278 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC-ceEEEEec
Confidence 33321111111 11111111333334444677778887776 55555543
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.76 E-value=1.2 Score=38.74 Aligned_cols=139 Identities=19% Similarity=0.278 Sum_probs=82.7
Q ss_pred CEEEEEcCCCCEEEEECCC--CceEEEecCCCCCEEEEEeecCCCcEEEEEeCC------CeEEEE-ECCC----CeEEE
Q 038802 106 SLLAASDLSGLIQVFDVKS--RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD------GIVKFW-DVAG----ESVVL 172 (532)
Q Consensus 106 ~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~d------g~i~iw-d~~~----~~~~~ 172 (532)
+.|..+...+.|.+|++.. .+....+.. -+.|..+.++. .|++++|--.+ ..+|+| |.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4454445567899999873 345556654 47899999998 89999985432 255664 2211 11111
Q ss_pred -eccC---------------------CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc----eeEEEe-----cC
Q 038802 173 -DLFG---------------------HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS----KSVMEV-----NH 221 (532)
Q Consensus 173 -~~~~---------------------~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~-----~~ 221 (532)
.+-| -+.++.+++..|..|++++.+ ++++.+|.+..... .....+ .|
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1111 234677899999777766643 36799998765322 111111 11
Q ss_pred --CCcEEEEEEecCCCEEEEEcCCeEEEEEc
Q 038802 222 --GKPIEDVMFLPSGGLIATAGGNSVKIWDL 250 (532)
Q Consensus 222 --~~~v~~i~~~~~~~~l~~~~d~~i~iwd~ 250 (532)
+-....+++ -+.++|..++..++++.+
T Consensus 185 ~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 185 IDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred ecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 112334444 356888888888888765
No 428
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=3.9 Score=43.89 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=109.4
Q ss_pred EcCCCCeEEEEEeCCeEEEEeCCCceEEE---E------e--eccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCce
Q 038802 59 FSPTTSHLFAATHSASLTLFSSQTLEKHS---A------I--SSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP 127 (532)
Q Consensus 59 ~sp~~~~l~~~~~d~~v~i~~~~~~~~~~---~------~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 127 (532)
+..-|+.+.+|+.+|.+.+|.+....... . + .-+..+|..+...+.-.++.+-+ |+.|.++++.+.+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELEP 100 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCcccc
Confidence 33457789999999999999876532111 1 0 01235666666555444444444 77788888766544
Q ss_pred EEEecCCCCCEEEEEee--cCC-C--cEEEEEe-CCCe-EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC
Q 038802 128 LRRLKSHTRPVRFVKYP--FLD-K--LHLVSGG-DDGI-VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 128 ~~~~~~h~~~i~~~~~~--~~~-~--~~l~s~s-~dg~-i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 200 (532)
.... .+..++...++. +.+ + .+.+..+ .... ...|+-+.+.....-.+-.....+++| .+..+.+|-.+
T Consensus 101 ~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~c~~~~~ 176 (877)
T KOG2063|consen 101 VPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW---CGHIVCLGLKK 176 (877)
T ss_pred cccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc---cceeEEEeecc
Confidence 2111 111111111111 101 1 2233333 2222 234544444443333333333334444 34555555543
Q ss_pred CeEEEEEcccCCceeEEEecC--CCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCC
Q 038802 201 HTVKLWDVRVENSKSVMEVNH--GKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNE 278 (532)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (532)
....+|...++........+. ...-..|.-.+++..++.+.|+...+-|.... ... . ..+.|+.....
T Consensus 177 ~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~-~~~------~---~~l~ws~~P~~ 246 (877)
T KOG2063|consen 177 SYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGI-IAQ------R---GTLVWSEVPLS 246 (877)
T ss_pred eeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCc-ccC------C---CceEecccchh
Confidence 334444433332222221111 11112334445665777777777777774332 111 0 11222211100
Q ss_pred CCccccccEEEEEecCCeEEEEECCCceEEEee
Q 038802 279 SGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM 311 (532)
Q Consensus 279 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (532)
.. ....|+++-+ ++.|.||+..++.+++++
T Consensus 247 v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 247 VV--VESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred hc--ccCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 00 0023555554 459999999999888877
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.57 E-value=0.33 Score=47.24 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=94.5
Q ss_pred ccCCCEEE-EEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCC------CcEEEEEeCCCeEEEEECCCCe-EEEe
Q 038802 102 RPDGSLLA-ASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLD------KLHLVSGGDDGIVKFWDVAGES-VVLD 173 (532)
Q Consensus 102 ~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~------~~~l~s~s~dg~i~iwd~~~~~-~~~~ 173 (532)
..|..+|+ .|+....++-.|++.|+.+..+..|... -+.|.|.. ...-++|-.+..|.-.|.+-.. .+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34555555 4555667888899999999999877765 46676621 1223445556666666765322 2211
Q ss_pred ccCCCCceEEEEEeC---CCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEc
Q 038802 174 LFGHKDYVRCGDCSP---VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250 (532)
Q Consensus 174 ~~~~~~~v~~i~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~ 250 (532)
. ...+.++--.|+. ....+++.||..|-|++||-- +........+.+..|..+..+.+|.++++.+...+.+-|+
T Consensus 554 ~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 554 V-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred e-eehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence 1 1122222222221 146789999999999999943 3333444446778899999999999999988888999887
Q ss_pred c
Q 038802 251 I 251 (532)
Q Consensus 251 ~ 251 (532)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.56 Score=48.00 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=95.1
Q ss_pred CCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEe---cCCCcEEEEEEecC
Q 038802 157 DGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV---NHGKPIEDVMFLPS 233 (532)
Q Consensus 157 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~ 233 (532)
--.|+||++. |+.+..+.-....+-.+.|+. ...|++...||++++|++-...... ... .....|..+.+..+
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~-~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIES-NSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcc-cccccccccCceeEEEEecC
Confidence 3458888874 555555544344666889985 5667778899999999986532222 111 22334555555556
Q ss_pred CCEEEEEcCCeEEEEEccCCCeeeEEccC-CCcceEEEEEeccCCCCCccccccEEEEEe-cCCeEEEEECCCce-EEEe
Q 038802 234 GGLIATAGGNSVKIWDLIGGGKMVYSMES-HNKTVTSVCVGRVGNESGEEAMQYRILSVA-LDGYMKVFDYGKMK-VTHS 310 (532)
Q Consensus 234 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~ 310 (532)
|-.+.+.++..+.+-+.... ....+.. ......+.+|.-..+. .....++-.. ..| ..++-..... ..+.
T Consensus 139 GVavlt~~g~v~~i~~~~~~--~~~~~~diP~~~~~~~~Wt~~~~~----~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVEEP--KLRKMPDIPYNELPKSCWTVFQPH----RQSTILLDVDVAVG-LHICQVEESRVQLHA 211 (829)
T ss_pred ceEEEecCCcEEEEcCCCcc--hhhhCCCCCCccCCCcceeEecCC----CcceeEEeechhhh-hcccceecccccccc
Confidence 65555555555555554321 1222221 1111111222211100 0011111111 011 1111111111 1122
Q ss_pred ee-cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 311 MR-FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 311 ~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+. ..+.+..+.+||+.++|+.-..+|.|.+-+.+..+..
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 22 2367888999999999999999999999888776544
No 431
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.43 E-value=2.6 Score=40.42 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=122.8
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECCCCce---EEEe----cCCCCCEEEEEeecC---CCcEEEEEeCC-------
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTP---LRRL----KSHTRPVRFVKYPFL---DKLHLVSGGDD------- 157 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~----~~h~~~i~~~~~~~~---~~~~l~s~s~d------- 157 (532)
..+.++|.|||+++++- ..|.|++++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 35789999999877764 599999999 44433 2222 234567889999882 23333333321
Q ss_pred -CeEEEEECCCC-------eEE-Eecc---CCCCceEEEEEeCCCCCEEEEEeCCC-------------eEEEEEcccC-
Q 038802 158 -GIVKFWDVAGE-------SVV-LDLF---GHKDYVRCGDCSPVNGDMFVTGSYDH-------------TVKLWDVRVE- 211 (532)
Q Consensus 158 -g~i~iwd~~~~-------~~~-~~~~---~~~~~v~~i~~~~~~~~~l~s~s~dg-------------~i~iwd~~~~- 211 (532)
..|.-|....+ +.+ ..+. .....-..+.|.| ++.+.++.+..+ .|.-.+....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24544544433 111 1111 1233456799999 887666655432 2332332211
Q ss_pred -----------CceeEEEecCCCcEEEEEEecC-CCEEEEEc--CC--eEEEEEccCCC---------------------
Q 038802 212 -----------NSKSVMEVNHGKPIEDVMFLPS-GGLIATAG--GN--SVKIWDLIGGG--------------------- 254 (532)
Q Consensus 212 -----------~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~--d~--~i~iwd~~~~~--------------------- 254 (532)
....++..++. ....++|+|. |.+.++-. ++ .|.+. ..+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccccc
Confidence 01122232332 3467999998 66655432 22 33332 2110
Q ss_pred -------eeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEE-Eeee----cCCCeeEEEE
Q 038802 255 -------KMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVT-HSMR----FPAPLMSVAF 322 (532)
Q Consensus 255 -------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~----~~~~v~~~~~ 322 (532)
.+...+..| ..+..+.|....... .-.+.++++.-..+.|....+.....+ .... ....+..+++
T Consensus 237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFP--EYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSG--GGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cCCCCcCccceeecCc-cccCceEEECCccCc--cccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 123333333 456677776553221 223556666666778888888744322 2222 3347999999
Q ss_pred ecCCCEEEEEecCCcEE
Q 038802 323 SPDCMTRVIGTSNGTIF 339 (532)
Q Consensus 323 s~~~~~l~~g~~dg~i~ 339 (532)
.|||.+.++-+.+|.|+
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999988888888875
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=1.7 Score=44.74 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=98.5
Q ss_pred CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEe-c--cCCCCceEEEEEeCCCC
Q 038802 115 GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD-L--FGHKDYVRCGDCSPVNG 191 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~i~~~~~~~ 191 (532)
-.|+||+.. |+.+..+.-..+.+-.+.|+ +...|++...||++.+|++-....-.. . ......|..+.+.. +|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence 457888854 56665555444578889998 556688889999999999864322110 1 11223344444443 44
Q ss_pred CEEEEEeCCCeEEE-EEcccCCceeEEEec-CCCcEEEEEEecCCC---EEEEEc-CCeEEEEEccCCCeeeEEccCCCc
Q 038802 192 DMFVTGSYDHTVKL-WDVRVENSKSVMEVN-HGKPIEDVMFLPSGG---LIATAG-GNSVKIWDLIGGGKMVYSMESHNK 265 (532)
Q Consensus 192 ~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 265 (532)
-.+.+. +|.+.+ -+.........-..+ ...+-.|-...+++. .++... .-...++-..........+.....
T Consensus 140 Vavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 VAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred eEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 433333 344433 332221110000000 011112222222211 111111 000111211111112222222345
Q ss_pred ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee--cCCCeeEEEEecC
Q 038802 266 TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR--FPAPLMSVAFSPD 325 (532)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~ 325 (532)
.+..+.+||+ ..+|+--..+|.|.+-+.+..+....+. ...+...++|..+
T Consensus 218 ~~~ki~VS~n---------~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 218 SVVKISVSPN---------RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred eEEEEEEcCC---------cceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 6788899988 6789999999999999988877776665 2233345666544
No 433
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.38 E-value=2.2 Score=39.14 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=79.9
Q ss_pred CEEEEEeecCCCcEEEEEe---CCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEE-cccCC
Q 038802 137 PVRFVKYPFLDKLHLVSGG---DDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD-VRVEN 212 (532)
Q Consensus 137 ~i~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd-~~~~~ 212 (532)
.+.+.++++ ++..++... ....+.++.... ...... ....+..-.|++ ++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 678899999 676665554 334555555432 222221 223677788998 677777766666666663 23322
Q ss_pred ceeE-EEecCC-CcEEEEEEecCCCEEEEEc----CCeEEEEEccCC--C------eeeEEccCCCcceEEEEEeccC
Q 038802 213 SKSV-MEVNHG-KPIEDVMFLPSGGLIATAG----GNSVKIWDLIGG--G------KMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 213 ~~~~-~~~~~~-~~v~~i~~~~~~~~l~~~~----d~~i~iwd~~~~--~------~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
.... ...... ..|.++.+||||..++... ++.|.+--+... + .+..........++.+.|.+++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 2222 121222 2899999999999777665 567776655321 1 1122222335678999999983
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.33 E-value=0.92 Score=46.67 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred EEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc-CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECC
Q 038802 226 EDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME-SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303 (532)
Q Consensus 226 ~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 303 (532)
.-+.-+.-++..++.+ ...+.|||.+.+ ....... ...+.|.++.|...+. +..+++.|....|.+|.-.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f~~~~~I~dLDWtst~d-------~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESFSEDDPIRDLDWTSTPD-------GQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeeecCCCceeeceeeecCC-------CCEEEEEEcCcEEEEEEcc
Confidence 3344444555555555 458999999876 3322222 4577899999987643 6789999999999998531
Q ss_pred ---------CceEEEeee----cCCCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 304 ---------KMKVTHSMR----FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 304 ---------~~~~~~~~~----~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
++..+..+. .+.+|.+..|.++|..++.. ++.++|++-.-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 234444443 34689999999998766544 34677776543
No 435
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.27 E-value=0.9 Score=46.80 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=118.1
Q ss_pred CCCCCcccccccCCCccC------ccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCce-EEEEeeccCceeEEEEEcc
Q 038802 31 SQTPESKYWSSFKPHQIP------GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLE-KHSAISSFKDVVTCSSFRP 103 (532)
Q Consensus 31 ~~~~~~~~w~~~~~~~~~------~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~ 103 (532)
+...+...-..|..+.++ .|.+.++.+.|.-++--++....|.+ ..+ ....+..-.+.|-..+||.
T Consensus 50 s~~~d~s~l~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~ 122 (1243)
T COG5290 50 SSIYDESGLKRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSA 122 (1243)
T ss_pred ccccchhheeEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeecc
Confidence 334444444456666665 67777777777766655555554433 111 1122223356788899999
Q ss_pred CCCEEEEEcCCCCEEEEECCCCceEEEec-------CCCCCEEEEEee-----------------c------CCCcEEEE
Q 038802 104 DGSLLAASDLSGLIQVFDVKSRTPLRRLK-------SHTRPVRFVKYP-----------------F------LDKLHLVS 153 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~~-----------------~------~~~~~l~s 153 (532)
|.+.++....+.+|.+++-.- .++..+. ..... -.+-|- | +.|+ +..
T Consensus 123 DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~kh-i~VgWgkketqfrgk~~raqlrdptmp~~vD~G~-l~a 199 (1243)
T COG5290 123 DEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKH-IRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGD-LFA 199 (1243)
T ss_pred CCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccc-eEeeecccchhccccchhhhccCCCCcccccccc-eeE
Confidence 999777777778888876421 1000000 00000 011111 0 0122 222
Q ss_pred EeCCCeEEEE--ECCC--------C--eEEEec------cCCCCce----EEEEEeCCCCCEEEEEeCCCe-----EEEE
Q 038802 154 GGDDGIVKFW--DVAG--------E--SVVLDL------FGHKDYV----RCGDCSPVNGDMFVTGSYDHT-----VKLW 206 (532)
Q Consensus 154 ~s~dg~i~iw--d~~~--------~--~~~~~~------~~~~~~v----~~i~~~~~~~~~l~s~s~dg~-----i~iw 206 (532)
......+..| |.+- + ...+.+ ..-+.++ ..+.|-| .|..+++-+.||. |.++
T Consensus 200 vd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkp-qgS~~ati~td~~~~S~~ViFf 278 (1243)
T COG5290 200 VDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKP-QGSKYATIGTDGCSTSESVIFF 278 (1243)
T ss_pred eeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhcccccc-CCceeeeeccCCCCCcceEEEE
Confidence 3334445555 2110 0 001111 1112222 3478999 8999998776653 5555
Q ss_pred EcccCCc-eeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccC
Q 038802 207 DVRVENS-KSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 207 d~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
.-+.-.. ......+....+...+|+-....++.+..+.+++|-..+- .-.....-.-..+.-+.|+|..
T Consensus 279 ErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-hWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 279 ERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-HWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce-EEEEEEeecCCCcceeeecccc
Confidence 4332111 1112224455567778887777777777889999986553 2111122223345566677653
No 436
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.21 E-value=2.8 Score=39.54 Aligned_cols=233 Identities=10% Similarity=-0.019 Sum_probs=114.7
Q ss_pred CCeEEEEEeCCeEEEEeCCC--ceEEEEeeccCceeEEEEEccCCCEEEEEc-CCCCEEEEECCCCce------------
Q 038802 63 TSHLFAATHSASLTLFSSQT--LEKHSAISSFKDVVTCSSFRPDGSLLAASD-LSGLIQVFDVKSRTP------------ 127 (532)
Q Consensus 63 ~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~------------ 127 (532)
+++++.|+.+|...+ +... .+..+.+ +...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 13 ~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 368999999885544 4543 2333332 356899999998777766554 334499999832211
Q ss_pred ---EEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCC----eEEEec----cCCCCceEEEEEeCC-CCCEEE
Q 038802 128 ---LRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE----SVVLDL----FGHKDYVRCGDCSPV-NGDMFV 195 (532)
Q Consensus 128 ---~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~----~~~~~~v~~i~~~~~-~~~~l~ 195 (532)
....-+|................++++....+|.++..... .....+ ..-..++..+..++. ....++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 01122344444444443312234455555667777644322 111110 011223333333331 245677
Q ss_pred EEeCCCeEEEEEccc--CCcee----EEEecCC-CcEEEEEEecCCCEEEEEcCCeEEEEEccC-CCeeeEEccCCCcce
Q 038802 196 TGSYDHTVKLWDVRV--ENSKS----VMEVNHG-KPIEDVMFLPSGGLIATAGGNSVKIWDLIG-GGKMVYSMESHNKTV 267 (532)
Q Consensus 196 s~s~dg~i~iwd~~~--~~~~~----~~~~~~~-~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i 267 (532)
.|+..+...++++.. ....- ....... .++....+ +++.++++ -+....+-|... .......+. -....
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l~-w~~~p 246 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YDEFGVFVNLYGKRRSRNPILH-WEFMP 246 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-ECcEEEEEeCCCCccccceEEE-cCCcc
Confidence 776642344555532 11000 0010111 34433333 34555554 444445555443 111111121 23344
Q ss_pred EEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeec
Q 038802 268 TSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF 313 (532)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (532)
.++++.. .++++-+ +..|.++++.+++.++++.+
T Consensus 247 ~~~~~~~-----------pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYHS-----------PYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEEC-----------CEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 5666653 3566655 45599999999999888865
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=1.7 Score=41.96 Aligned_cols=134 Identities=14% Similarity=0.073 Sum_probs=86.4
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCe---EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCcee
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGES---VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS 215 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 215 (532)
+.+-|. |.+..+.+...|.+.-|-+.... ++..-....++|.++.|++ |.+.+|.--.|++|.+++....+...
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhh
Confidence 344454 33333334444555556543221 2222223567999999999 99999999999999999874332222
Q ss_pred EEEe---cCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccC
Q 038802 216 VMEV---NHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 216 ~~~~---~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (532)
.... .....|...+|+.+ .-+|...+..+-+|-.....+.+...+.|.-.|.-..|.++.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 2211 23456889999866 566666666677777665556667777888888888888874
No 438
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=95.05 E-value=0.076 Score=43.51 Aligned_cols=92 Identities=23% Similarity=0.365 Sum_probs=64.2
Q ss_pred CcccccchhHHHhhcccchHHHHHHhhCCC-----CC--h-hHHHHHHHHH--hhchHHHHhcCCChHhHHHHHHHHHhc
Q 038802 394 RPKKLKLGEHDKLLKKFRHKEALVSVLNGK-----NP--E-NVVAVMEELV--ARKKLMKCVSNLDNEELGLLLSFMQKH 463 (532)
Q Consensus 394 ~~~~~k~~~~~~~l~~~~~~~al~~al~~~-----~~--~-~~~~~~~~l~--~~~~l~~~~~~~~~~~~~~ll~~~~~~ 463 (532)
..-..+..+.+.+|.+++..+||..||..- ++ + ....+++-|. +...+..+++.++.+++.-|++||.+-
T Consensus 34 ~~~~~~~~qvr~ll~~g~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYiYkg 113 (152)
T PF04699_consen 34 AEVQPKEQQVRQLLSSGDNEEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYIYKG 113 (152)
T ss_dssp -GGGGTHHHHHHHHHCT-HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHhCCCHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHHHHh
Confidence 344567888999999999999999999741 11 1 2222333332 225699999999999999999999999
Q ss_pred cCCCCch---HHHHHHHHHHHHhcc
Q 038802 464 STVPRYS---GLLIGLMEKVLEMRA 485 (532)
Q Consensus 464 ~~~~~~~---~~~~~~~~~il~~~~ 485 (532)
|..|... .+++.|=++++..-|
T Consensus 114 ~~~~~~~s~~~~LL~WheK~~~~~G 138 (152)
T PF04699_consen 114 MESPSENSSGGVLLSWHEKLVEVAG 138 (152)
T ss_dssp TTS--TTHH-CHHHHHHHHHHHCCH
T ss_pred ccCccCccHHHHHHHHHHHHHHHcC
Confidence 9876554 468888888887644
No 439
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.99 E-value=2.7 Score=38.12 Aligned_cols=192 Identities=11% Similarity=0.105 Sum_probs=113.2
Q ss_pred eEEEEeecc-CceeEEEEEccCCCEEEEEcCCC--CEEEEECCCCceEEEecCCC-CCEEEEEeecCCCcEEEEEeCCCe
Q 038802 84 EKHSAISSF-KDVVTCSSFRPDGSLLAASDLSG--LIQVFDVKSRTPLRRLKSHT-RPVRFVKYPFLDKLHLVSGGDDGI 159 (532)
Q Consensus 84 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~s~dg~ 159 (532)
+.+.++... ..-...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. .--..++.. ++....-.=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 334444322 23456788878888878777666 79999999998776554222 112233333 4455555567899
Q ss_pred EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEec-CCCc---EEEEEEecCCC
Q 038802 160 VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKP---IEDVMFLPSGG 235 (532)
Q Consensus 160 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~---v~~i~~~~~~~ 235 (532)
..+||..+.+.+.++.-. ..=..++. ++..|+.+.....+.++|..+.+........ .+.+ ++-+.+. +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999888877532 34445652 5666776666778999998876555544432 2333 4445664 555
Q ss_pred EEEEEc-CCeEEEEEccCCCeeeEEcc---------------CCCcceEEEEEeccCCCCCccccccEEEEE
Q 038802 236 LIATAG-GNSVKIWDLIGGGKMVYSME---------------SHNKTVTSVCVGRVGNESGEEAMQYRILSV 291 (532)
Q Consensus 236 ~l~~~~-d~~i~iwd~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~ 291 (532)
+.|-.= ...|...|..++ .....+. ....-.+.+++.|.. +.+++||
T Consensus 187 IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~--------~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET--------DRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT--------TEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC--------CEEEEEe
Confidence 554444 567777887776 4444331 013457899999885 5566665
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.92 E-value=0.022 Score=58.61 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=94.5
Q ss_pred CccccCeeEEEEcCCC-CeEEEEEeCCeEEEEeCC--CceEEEE-----eeccCceeEEEEEcc---CCCEEEEEcCCCC
Q 038802 48 PGLVSSINSIVFSPTT-SHLFAATHSASLTLFSSQ--TLEKHSA-----ISSFKDVVTCSSFRP---DGSLLAASDLSGL 116 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~-~~l~~~~~d~~v~i~~~~--~~~~~~~-----~~~~~~~v~~~~~~~---~~~~l~~g~~dg~ 116 (532)
.|..+.|-.+.|.... +.++ -.-|.+.||+++ .|+.... .......+.-+.|+| +.-++..+..+|+
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 5666777777774321 2222 223678888864 2333222 222234445556655 6678888888999
Q ss_pred EEEEECCCCceEEEecCCCCCEEEEEe-----------ecCCCcEEEEEeCCCeEEEEECC-----CCeEEEeccCCC-C
Q 038802 117 IQVFDVKSRTPLRRLKSHTRPVRFVKY-----------PFLDKLHLVSGGDDGIVKFWDVA-----GESVVLDLFGHK-D 179 (532)
Q Consensus 117 i~iwd~~~~~~~~~~~~h~~~i~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~~-~ 179 (532)
|++.+...... ..+.+|...+..++| +| ||..++.++.||.++.|.+. .-.+.+..+.|. .
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 99887764322 445567776665544 67 88999999999998888763 223444555666 3
Q ss_pred ceEEEEEeCCCC---------CEEEEEeC-CCeEEEEEcccCCce
Q 038802 180 YVRCGDCSPVNG---------DMFVTGSY-DHTVKLWDVRVENSK 214 (532)
Q Consensus 180 ~v~~i~~~~~~~---------~~l~s~s~-dg~i~iwd~~~~~~~ 214 (532)
+-.|.-|+. +. .++++++. ...+++|.....++.
T Consensus 285 p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 333333432 11 23444443 445888876554443
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.92 E-value=0.0052 Score=58.79 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=99.6
Q ss_pred EEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEE-EcCCCCEEEEECCCCceEEEecCC
Q 038802 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAA-SDLSGLIQVFDVKSRTPLRRLKSH 134 (532)
Q Consensus 56 ~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h 134 (532)
...|-|.+.-++.++.+..+..||-. ++...... .++....++|..++..++. +-..+.+.+||+.+......-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 45567777778888888999999854 33333332 2455667788888776654 456789999999764321111111
Q ss_pred CCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 038802 135 TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207 (532)
Q Consensus 135 ~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 207 (532)
...-.-+.|++ ....++.+...|.+.+++..+.+.+...-.|...++++++.+ .++.+.++.|..+.+-.
T Consensus 117 ~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 117 TSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTT 186 (615)
T ss_pred cchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhh
Confidence 12222267888 777888888999999999887776655555999999999988 45666677666554433
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.90 E-value=1.5 Score=34.85 Aligned_cols=118 Identities=13% Similarity=0.189 Sum_probs=75.2
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccCC------ceeEEEecCCCcEEEEEEec-----CCCEEEEEcCCeEEEEEccC
Q 038802 184 GDCSPVNGDMFVTGSYDHTVKLWDVRVEN------SKSVMEVNHGKPIEDVMFLP-----SGGLIATAGGNSVKIWDLIG 252 (532)
Q Consensus 184 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~d~~i~iwd~~~ 252 (532)
-.|.. ....|++++.-|+|.|++..... ...+..+.-...|++++--+ +...|+.|+...+..||+..
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 34554 45578888888999999876432 12223345567788886554 35588888999999999987
Q ss_pred CCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEe
Q 038802 253 GGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHS 310 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (532)
...... .+ -...+.++.+-.-+.. ..-++..+.+..|.-||....+...+
T Consensus 83 N~d~Fy-ke-~~DGvn~i~~g~~~~~------~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFY-KE-VPDGVNAIVIGKLGDI------PSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Cchhhh-hh-CccceeEEEEEecCCC------CCcEEEECceEEEEEeCCCCcEEEEE
Confidence 633322 22 2356777777544321 23355555577788888766665544
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.84 E-value=1.5 Score=42.76 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=77.4
Q ss_pred CeeEEEEcCCCCeEEEEE-----------eCC-eEEEEeCCC--ce--EEEEeeccCceeEEEEEccCCCEEEEEcCCCC
Q 038802 53 SINSIVFSPTTSHLFAAT-----------HSA-SLTLFSSQT--LE--KHSAISSFKDVVTCSSFRPDGSLLAASDLSGL 116 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~-----------~d~-~v~i~~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 116 (532)
....|+|.++|+.+++-. ..+ .|.+++-.+ ++ ....+...-.....+++.++| +++ ++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~- 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD- 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe-
Confidence 456899999998655532 123 787776432 32 223333333456889999888 444 44343
Q ss_pred EEEE-ECCCC-----c--eE-EEecC----CCCCEEEEEeecCCCcEEEEEeCC-------------------CeEEEEE
Q 038802 117 IQVF-DVKSR-----T--PL-RRLKS----HTRPVRFVKYPFLDKLHLVSGGDD-------------------GIVKFWD 164 (532)
Q Consensus 117 i~iw-d~~~~-----~--~~-~~~~~----h~~~i~~~~~~~~~~~~l~s~s~d-------------------g~i~iwd 164 (532)
|..| |.... + .+ ..+.. +......+.|.| ++.+.++.+.. |.|..+|
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4434 44221 1 11 12222 134467899998 77766654421 4566666
Q ss_pred CCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEe
Q 038802 165 VAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGS 198 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 198 (532)
..+++....-.++. ....++|++ +++++++-.
T Consensus 171 pdg~~~e~~a~G~r-np~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHGFQ-NPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecCcC-CCccceECC-CCCEEEEcc
Confidence 66554332223333 344788888 787776644
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.84 E-value=1.9 Score=42.08 Aligned_cols=144 Identities=8% Similarity=0.031 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCEEEEEe-----------CCC-eEEEEEcccCCce--eE-EEecCCCcEEEEEEecCCCEEEEEcCCeE
Q 038802 181 VRCGDCSPVNGDMFVTGS-----------YDH-TVKLWDVRVENSK--SV-MEVNHGKPIEDVMFLPSGGLIATAGGNSV 245 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s-----------~dg-~i~iwd~~~~~~~--~~-~~~~~~~~v~~i~~~~~~~~l~~~~d~~i 245 (532)
...++|.+ +++++++-. ..+ .|.+++-..+... .. ...........+++.++| ++++......
T Consensus 16 P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDIL 93 (367)
T ss_pred CceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEE
Confidence 44778887 777766642 223 6777764432221 11 111233345789999888 5554434333
Q ss_pred EEEEccCCC------e-eeEEccC----CCcceEEEEEeccCCCCCccccccEEEEEec-------------------CC
Q 038802 246 KIWDLIGGG------K-MVYSMES----HNKTVTSVCVGRVGNESGEEAMQYRILSVAL-------------------DG 295 (532)
Q Consensus 246 ~iwd~~~~~------~-~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~-------------------dg 295 (532)
++.|..... + .+..+.. +......+.|.|+| .+.++.+. .|
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG---------~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG---------WLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC---------CEEEecccCCCceeccCCCccCcccccCc
Confidence 344543211 1 2222322 23447789999984 44443331 14
Q ss_pred eEEEEECCCceEEEeeecCCCeeEEEEecCCCEEEEEecC
Q 038802 296 YMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSN 335 (532)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 335 (532)
.|.-++..+++.......-.....++|+|+|+.+++-..+
T Consensus 165 ~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 165 GLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 5666666655433222223456789999999887764433
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.73 E-value=0.011 Score=56.63 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=96.7
Q ss_pred EEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC
Q 038802 97 TCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176 (532)
Q Consensus 97 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 176 (532)
....|.|.+.-++.++.+..+..||-. ++...... .++....++|.......++.+-..+.+.+||+.+...-.--.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345678877778888888889999854 44333332 4555667888773334455667789999999975432111111
Q ss_pred CCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEE
Q 038802 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIW 248 (532)
Q Consensus 177 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iw 248 (532)
....-.-+.|++ ....++.|...|.+.+++..+........ .|...+.++++.+.+..+..+.|..+.+-
T Consensus 116 g~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 116 GTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred CcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccceeeecCcHHHHHHh
Confidence 111112267887 77888888899999999987744333322 38889999999998766655555544433
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.78 Score=44.15 Aligned_cols=121 Identities=9% Similarity=0.159 Sum_probs=70.7
Q ss_pred CeEEEEEcccC--CceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCee---eEEccCCCcceEEEEEec
Q 038802 201 HTVKLWDVRVE--NSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKM---VYSMESHNKTVTSVCVGR 274 (532)
Q Consensus 201 g~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~ 274 (532)
|.+.=|-.... .....+.....++|.++.||+|.+.+|.-. +.+|.+++....... ..+-+.....|.+.+|+.
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS 122 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence 44555544432 223344445677999999999999999987 899999997433111 111222344588889986
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCC-ceEEEeee-cCCCeeEEEEecCCCEEEEE
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGK-MKVTHSMR-FPAPLMSVAFSPDCMTRVIG 332 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~g 332 (532)
+. -++..+..| +.+|-... .+.++..+ +...|.-..|.++.+.+..+
T Consensus 123 s~----------e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 123 ST----------EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred Ce----------eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 52 244444333 45554332 11222222 55677777788776654433
No 447
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.21 Score=53.30 Aligned_cols=141 Identities=10% Similarity=0.006 Sum_probs=89.9
Q ss_pred CeeEEEEcCCCCeEEEEEe--CCeEEEEeCCCceEEE-----Eeecc------CceeEEEEEccCC-CEEEEEcCCCCEE
Q 038802 53 SINSIVFSPTTSHLFAATH--SASLTLFSSQTLEKHS-----AISSF------KDVVTCSSFRPDG-SLLAASDLSGLIQ 118 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~--d~~v~i~~~~~~~~~~-----~~~~~------~~~v~~~~~~~~~-~~l~~g~~dg~i~ 118 (532)
+|..+...+|+...++... +-.|..||+.+..... .+..| .....++.|+|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5666777778775555443 3388889986532211 11111 2356678888843 3456677799999
Q ss_pred EEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccC----CCCceEEEEEeCCCCCEE
Q 038802 119 VFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG----HKDYVRCGDCSPVNGDMF 194 (532)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l 194 (532)
+..+........--......+|++|+| .+..++.|-..|++.-|... .+....+.+ ....|.|++|.. ...++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEE
Confidence 887754322222123456789999999 99999999999999998754 332222221 246789999987 55555
Q ss_pred EE
Q 038802 195 VT 196 (532)
Q Consensus 195 ~s 196 (532)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 44
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.29 E-value=4.5 Score=42.97 Aligned_cols=93 Identities=16% Similarity=0.280 Sum_probs=52.0
Q ss_pred cCeeEEEEcCCCCeEEEEEeCCeEEEEeCCC-ceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEE
Q 038802 52 SSINSIVFSPTTSHLFAATHSASLTLFSSQT-LEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRR 130 (532)
Q Consensus 52 ~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 130 (532)
-.|..|.++|+|.+++..+..|.+ |-.+.. ......+.+....|.|=.+.-+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 478899999999999988876544 433321 11111222222333333222121111
Q ss_pred ecCCCCCEEEEEeecC--CCcEEEEEeCCCeEEEEECCC
Q 038802 131 LKSHTRPVRFVKYPFL--DKLHLVSGGDDGIVKFWDVAG 167 (532)
Q Consensus 131 ~~~h~~~i~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~ 167 (532)
...+...|..+.|+|. ++.+|++-..|+++++||+..
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123445667778773 256777888888888888864
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.23 E-value=4.4 Score=37.15 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=85.4
Q ss_pred eeEEEEEccCCCEEEEEc---CCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEE-CCCCeE
Q 038802 95 VVTCSSFRPDGSLLAASD---LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD-VAGESV 170 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~ 170 (532)
.+.+.+++++++.+|... ....+.++... ....... ....+..-.|++ ++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999887655 23345555433 3222221 223677778998 666666666566666663 233322
Q ss_pred E-Eecc--CCCCceEEEEEeCCCCCEEEEEe---CCCeEEEEEcccCCce--eE------EEecCCCcEEEEEEecCCCE
Q 038802 171 V-LDLF--GHKDYVRCGDCSPVNGDMFVTGS---YDHTVKLWDVRVENSK--SV------MEVNHGKPIEDVMFLPSGGL 236 (532)
Q Consensus 171 ~-~~~~--~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~--~~------~~~~~~~~v~~i~~~~~~~~ 236 (532)
. .... .-...|+.+.++| ++..++... .++.|.+--+...... .. ........+.++.|.+++.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 1 1121 1122899999999 888777655 3467777654322111 11 11123568899999999998
Q ss_pred EEEEc
Q 038802 237 IATAG 241 (532)
Q Consensus 237 l~~~~ 241 (532)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.19 E-value=2.7 Score=43.81 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=72.7
Q ss_pred CCCEEEEEeCCCeEEEEEccc-------C-----------CceeEEEecCCCcEEEEEEe--cCCCEEEEEc-CCeEEEE
Q 038802 190 NGDMFVTGSYDHTVKLWDVRV-------E-----------NSKSVMEVNHGKPIEDVMFL--PSGGLIATAG-GNSVKIW 248 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~-d~~i~iw 248 (532)
+...|+.+..||.|.+|.+.. . ...+.+....+..+++++++ ...+++|+++ ...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456889999999999997621 0 01122334456789999998 7888888888 4566666
Q ss_pred EccC--CCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEEC
Q 038802 249 DLIG--GGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 249 d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
-... .......-..|...|.+++|.++..... ....+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~---G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPN---GHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCc---cceEEEEEeccCcEEEEEE
Confidence 5433 2111111223667899999988753211 0137888999999999887
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.99 E-value=5.9 Score=37.85 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCeE---EEeccCCCCce--EEEEEeCCCCCEEEEEeCC-----CeEEEEEcccC
Q 038802 147 DKLHLVSGGDD-----GIVKFWDVAGESV---VLDLFGHKDYV--RCGDCSPVNGDMFVTGSYD-----HTVKLWDVRVE 211 (532)
Q Consensus 147 ~~~~l~s~s~d-----g~i~iwd~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 211 (532)
++.+++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++.. ++.+.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55666777654 3566777766542 12221111111 122232 56677777642 35888888765
Q ss_pred CceeEEEecCCCcEEEEEEecCCCEEEEEc-CC----eEEEEEccCC
Q 038802 212 NSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GN----SVKIWDLIGG 253 (532)
Q Consensus 212 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~----~i~iwd~~~~ 253 (532)
+-...............+...++++.+.|+ ++ .+.+||..+.
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 433322222111222223334667777666 43 3568887764
No 452
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.99 E-value=2.2 Score=43.98 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEe--cCCCEEEEEc-CCeEEEEEcc-----C
Q 038802 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFL--PSGGLIATAG-GNSVKIWDLI-----G 252 (532)
Q Consensus 181 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~-d~~i~iwd~~-----~ 252 (532)
.+-+..+. -+...++.+....+.|||.+.+.......+...+.|.++.|. |+|+.+++.+ .+.|.+|.-. +
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444 444444444456799999998665555555668899999986 4777766666 8999988642 1
Q ss_pred CC---eeeEEc--cCCC-cceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 253 GG---KMVYSM--ESHN-KTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 253 ~~---~~~~~~--~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
.. .++..+ ..|. .+|.+..|.++| . ++.|+ ++.+.|+|
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---------~-LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---------T-LVVGS-GNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCC---------e-EEEEe-CCEEEEEC
Confidence 11 122222 2333 578899999885 3 44333 45677776
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.86 E-value=6.6 Score=37.91 Aligned_cols=188 Identities=14% Similarity=0.198 Sum_probs=106.1
Q ss_pred CCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEcc----CCCE--EEEEc-CC---CCEEEEECCCC-ceEE
Q 038802 61 PTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRP----DGSL--LAASD-LS---GLIQVFDVKSR-TPLR 129 (532)
Q Consensus 61 p~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~g~-~d---g~i~iwd~~~~-~~~~ 129 (532)
|..++++....++-+.+||++ |+.+..+.. +.++.+.... +|+. |++++ .+ .+|++|.+... ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344577777778899999987 566666542 3334333321 3432 44443 22 46999977531 2333
Q ss_pred EecCC-------CCCEEEEEe--ecCCC-cEEEEEeCCCeEEEEECC---CC----eEEEeccCCCCceEEEEEeCCCCC
Q 038802 130 RLKSH-------TRPVRFVKY--PFLDK-LHLVSGGDDGIVKFWDVA---GE----SVVLDLFGHKDYVRCGDCSPVNGD 192 (532)
Q Consensus 130 ~~~~h-------~~~i~~~~~--~~~~~-~~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~~v~~i~~~~~~~~ 192 (532)
.+... ...+..+|+ ++.++ -+++....+|.+..|-+. .+ +.++.+.. ...+..|.... ...
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDD-e~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDD-ETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET-TTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEec-ccC
Confidence 33221 123556665 34333 467778889988888764 23 35666654 34677888887 677
Q ss_pred EEEEEeCCCeEEEEEcccCCc--eeEE-Ee---cCCCcEEEEEEec--CC-CEEEEEc--CCeEEEEEccCC
Q 038802 193 MFVTGSYDHTVKLWDVRVENS--KSVM-EV---NHGKPIEDVMFLP--SG-GLIATAG--GNSVKIWDLIGG 253 (532)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~--~~~~-~~---~~~~~v~~i~~~~--~~-~~l~~~~--d~~i~iwd~~~~ 253 (532)
.|+.|-.+.-|.-|+.+-... .... .. .....|..+++.. ++ .+|++++ +++..||+....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 888898888788787763221 1222 21 1345788888764 33 3555555 679999996643
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.83 E-value=0.3 Score=30.09 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCEEEEEeecCCC--cEEEEEeCCCeEEEEECCC
Q 038802 136 RPVRFVKYPFLDK--LHLVSGGDDGIVKFWDVAG 167 (532)
Q Consensus 136 ~~i~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~ 167 (532)
+.|.++.|+|..+ .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6888888899999999985
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.75 E-value=6.7 Score=37.62 Aligned_cols=232 Identities=16% Similarity=0.133 Sum_probs=115.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceE---EEEe----eccCceeEEEEEccC---CCEEEEEcC-C-------
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEK---HSAI----SSFKDVVTCSSFRPD---GSLLAASDL-S------- 114 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~g~~-d------- 114 (532)
.-++|+|.|||.. +++...|.|++++ ..+.. +..+ .........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRL-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCE-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcE-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999865 5567799999999 44443 2222 123457899999994 334443322 1
Q ss_pred -CCEEEEECCCC-------c-eEEEecC---CCCCEEEEEeecCCCcEEEEEeCCC-------------eEEEEECCCCe
Q 038802 115 -GLIQVFDVKSR-------T-PLRRLKS---HTRPVRFVKYPFLDKLHLVSGGDDG-------------IVKFWDVAGES 169 (532)
Q Consensus 115 -g~i~iwd~~~~-------~-~~~~~~~---h~~~i~~~~~~~~~~~~l~s~s~dg-------------~i~iwd~~~~~ 169 (532)
..|.-|....+ + .+..+.. ....-..+.|.| ++.+.++.+..+ .|.-.+.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 23444444333 1 1112222 233456799999 887766665433 23333322 11
Q ss_pred EE-------------E-eccCCCCceEEEEEeCCCCCEEEEE-eCCCeEEEEEcccCC----------------------
Q 038802 170 VV-------------L-DLFGHKDYVRCGDCSPVNGDMFVTG-SYDHTVKLWDVRVEN---------------------- 212 (532)
Q Consensus 170 ~~-------------~-~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~---------------------- 212 (532)
.. . --.++.+ ...++|+|..+.++++= +.|+.=.|.-+..+.
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00 0 0112333 34789999336655442 222222221111110
Q ss_pred -----ceeEEEecCCCcEEEEEEec-------CCCEEEEEc-CCeEEEEEccCCCeee---EEccCCCcceEEEEEeccC
Q 038802 213 -----SKSVMEVNHGKPIEDVMFLP-------SGGLIATAG-GNSVKIWDLIGGGKMV---YSMESHNKTVTSVCVGRVG 276 (532)
Q Consensus 213 -----~~~~~~~~~~~~v~~i~~~~-------~~~~l~~~~-d~~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~ 276 (532)
..+.....+...+..+.|.. .|.++++.- .+.|....+....... ..+......+..+++.|+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD- 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD- 316 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-
Confidence 01233344556677777774 345666666 6788888886553322 122344557899999998
Q ss_pred CCCCccccccEEEEEecCCeEE
Q 038802 277 NESGEEAMQYRILSVALDGYMK 298 (532)
Q Consensus 277 ~~~~~~~~~~~l~s~~~dg~i~ 298 (532)
+.++++.+.+|.|.
T Consensus 317 --------G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 --------GALYVSDDSDGKIY 330 (331)
T ss_dssp --------SEEEEEE-TTTTEE
T ss_pred --------CeEEEEECCCCeEe
Confidence 46666666777764
No 456
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.71 E-value=4.6 Score=35.57 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=105.9
Q ss_pred CCEEEEEcCCCCEEEEECCCCceEEE-ecCCCCCEEEEEeecCCC--cEEEEEeCCCeEEEEECC--CCeEEEeccC---
Q 038802 105 GSLLAASDLSGLIQVFDVKSRTPLRR-LKSHTRPVRFVKYPFLDK--LHLVSGGDDGIVKFWDVA--GESVVLDLFG--- 176 (532)
Q Consensus 105 ~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~~~~~~--~~l~s~s~dg~i~iwd~~--~~~~~~~~~~--- 176 (532)
+.++.+--..|.|.-||..+.+..+. +.+ .+..++.+--.++ .+.+.++..-.|--||.. ......++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34555555567777788876544332 222 1233333422121 233333433345557732 2233333211
Q ss_pred --CCCceEEEEEeCCCCCEEEEEeCC---------CeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEc--CC
Q 038802 177 --HKDYVRCGDCSPVNGDMFVTGSYD---------HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAG--GN 243 (532)
Q Consensus 177 --~~~~v~~i~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--d~ 243 (532)
.....+....+| +|++++-.-.| |.++.|-... ...... ..-.--+.++|+.+.+.+.... +-
T Consensus 105 d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIW-NCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred hHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCC--Cceeee-hhccCCccccccccCcEEEEEccCce
Confidence 133455666778 88874322222 3344443321 111111 2222335678887777665554 55
Q ss_pred eEEEEE--ccCCC----eeeEEccCC---Cc-ceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeec
Q 038802 244 SVKIWD--LIGGG----KMVYSMESH---NK-TVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRF 313 (532)
Q Consensus 244 ~i~iwd--~~~~~----~~~~~~~~~---~~-~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (532)
.|.-|| ..++. +.+..+... .. .--.+++... +.+.+++-..|+|...|..+++.+..++.
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e---------G~L~Va~~ng~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE---------GNLYVATFNGGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC---------CcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence 777787 33331 222222211 10 1112333222 67778888889999999999999999996
Q ss_pred C-CCeeEEEEec
Q 038802 314 P-APLMSVAFSP 324 (532)
Q Consensus 314 ~-~~v~~~~~s~ 324 (532)
+ ..|+|++|--
T Consensus 252 Pt~qitsccFgG 263 (310)
T KOG4499|consen 252 PTPQITSCCFGG 263 (310)
T ss_pred CCCceEEEEecC
Confidence 5 5789999864
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.68 E-value=0.32 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=25.1
Q ss_pred cCeeEEEEcCCCC---eEEEEEeCCeEEEEeCCC
Q 038802 52 SSINSIVFSPTTS---HLFAATHSASLTLFSSQT 82 (532)
Q Consensus 52 ~~V~~i~~sp~~~---~l~~~~~d~~v~i~~~~~ 82 (532)
++|.++.|+|+.. +|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998544 677676779999999985
No 458
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.57 E-value=6 Score=36.49 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=114.9
Q ss_pred eEEEEcCCCCeEEEEEeCCeEEEEeCC-------CceEEEEeec-----cCceeEEEEEccCCC------------EEEE
Q 038802 55 NSIVFSPTTSHLFAATHSASLTLFSSQ-------TLEKHSAISS-----FKDVVTCSSFRPDGS------------LLAA 110 (532)
Q Consensus 55 ~~i~~sp~~~~l~~~~~d~~v~i~~~~-------~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~ 110 (532)
+.|+|+|.+.+.++....+...+||.. ....+-++.. .....+.+.|+.... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 579999999877777778899999985 1122333332 124567777775333 2566
Q ss_pred EcCCCCEEEEECCCCce-----EEEecC-CCCCE-EEEEeecC-CCcEEEE-EeCCCeEEEEECCCCeEEEeccCCCCce
Q 038802 111 SDLSGLIQVFDVKSRTP-----LRRLKS-HTRPV-RFVKYPFL-DKLHLVS-GGDDGIVKFWDVAGESVVLDLFGHKDYV 181 (532)
Q Consensus 111 g~~dg~i~iwd~~~~~~-----~~~~~~-h~~~i-~~~~~~~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~v 181 (532)
+++||+|.-|...-... ...+.. ..+.| ..+++... .+++|+. --..++|.++|-.-.. +..-....++-
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~DP~ 184 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFIDPA 184 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccCCC
Confidence 78899999998532211 122221 12233 23444321 2344443 3457888888854222 11100011110
Q ss_pred EEEEEeCC-----CCCEEE-------------EEeCCCeEEEEEcccCCceeEE-EecCCCcEEEEEEec------CCCE
Q 038802 182 RCGDCSPV-----NGDMFV-------------TGSYDHTVKLWDVRVENSKSVM-EVNHGKPIEDVMFLP------SGGL 236 (532)
Q Consensus 182 ~~i~~~~~-----~~~~l~-------------s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~------~~~~ 236 (532)
.-..|.|. .+++++ .|..-|.|-+||+.. .....+ ..+.-..-+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00011110 122222 234447899999874 222222 222233446677655 4667
Q ss_pred EEEEc-CCeEEEEEccCCCeeeEEccCCCc------ceEEEEEec
Q 038802 237 IATAG-GNSVKIWDLIGGGKMVYSMESHNK------TVTSVCVGR 274 (532)
Q Consensus 237 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~------~i~~~~~~~ 274 (532)
|+.-- ||+|..||..++ ..+..+....+ ..+.+.|..
T Consensus 264 LVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 76655 999999998876 44444443322 356677755
No 459
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.18 E-value=2.8 Score=43.73 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=74.8
Q ss_pred CeeEEEEcC--CCCeEEEEEeCCeEEEEeCCC-------c----e---------EEEEeeccCceeEEEEEc--cCCCEE
Q 038802 53 SINSIVFSP--TTSHLFAATHSASLTLFSSQT-------L----E---------KHSAISSFKDVVTCSSFR--PDGSLL 108 (532)
Q Consensus 53 ~V~~i~~sp--~~~~l~~~~~d~~v~i~~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l 108 (532)
.|+.|.... +...|++|..||.|.+|..++ . . +...+. -...+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 455554433 445889999999999996521 1 0 011111 24578999998 788999
Q ss_pred EEEcCCCCEEEEECCCC--ce-EEEecCCCCCEEEEEeecCC--Cc---EEEEEeCCCeEEEEEC
Q 038802 109 AASDLSGLIQVFDVKSR--TP-LRRLKSHTRPVRFVKYPFLD--KL---HLVSGGDDGIVKFWDV 165 (532)
Q Consensus 109 ~~g~~dg~i~iwd~~~~--~~-~~~~~~h~~~i~~~~~~~~~--~~---~l~s~s~dg~i~iwd~ 165 (532)
|++++...|.||-.... +. ...-..|...|.+|+|.+.+ +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888866431 11 11111366778999997633 22 7888999999999887
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.07 E-value=2.2 Score=41.80 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCCeEEE-EEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCC-------EEEEEcCCCCEEEEECCC-CceEEEec
Q 038802 62 TTSHLFA-ATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGS-------LLAASDLSGLIQVFDVKS-RTPLRRLK 132 (532)
Q Consensus 62 ~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~g~~dg~i~iwd~~~-~~~~~~~~ 132 (532)
+.+.++. |.....++-.|++.|+.+.....|.+. -+.|.|+.+ .-++|-++..|.-.|..- |..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4444433 344456777788899999999887765 567877532 233444455555555432 22222111
Q ss_pred --C--CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 038802 133 --S--HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV 208 (532)
Q Consensus 133 --~--h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 208 (532)
. ......|..-. ...+++.||..|.|++||--.......+.+....|..+.... +|.++++.+. .++.+-|+
T Consensus 556 sKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ehhccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEeec-ceEEEEec
Confidence 1 11122222222 567899999999999999655444455677788899999998 8887776554 46777776
Q ss_pred cc
Q 038802 209 RV 210 (532)
Q Consensus 209 ~~ 210 (532)
+-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 53
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.89 E-value=0.71 Score=41.11 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=49.7
Q ss_pred EEcCCCCeEEEEEeCCeEEEEeCCCceEEEEe-------e-------ccCceeEEEEEccCCCEEEEEcCCCCEEEEECC
Q 038802 58 VFSPTTSHLFAATHSASLTLFSSQTLEKHSAI-------S-------SFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVK 123 (532)
Q Consensus 58 ~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 123 (532)
.+..++.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34557889999999999999999987764432 1 2446778888888887666655 5778888865
Q ss_pred CCc
Q 038802 124 SRT 126 (532)
Q Consensus 124 ~~~ 126 (532)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 443
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=7.4 Score=35.59 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=112.8
Q ss_pred CCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec--cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC
Q 038802 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL--FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211 (532)
Q Consensus 134 h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~ 211 (532)
-.+-+..+.++ +++...+..+.-+++.|+.+......+ ..-.+.-.++.. .|++...+..|.-+.+.|+.+.
T Consensus 85 ~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 85 ARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCC
Confidence 34456677774 567888888888999999876433222 112234445544 5788888886777889999876
Q ss_pred CceeEEEe--cCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEcc-CCCcceEEEEEeccCCCCCccccccE
Q 038802 212 NSKSVMEV--NHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSME-SHNKTVTSVCVGRVGNESGEEAMQYR 287 (532)
Q Consensus 212 ~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 287 (532)
......-. ........++.| |++...+. |+.+.+-|+.+...+...-. .....+.++..+++ +
T Consensus 159 ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-----------r 225 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-----------R 225 (370)
T ss_pred CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-----------e
Confidence 55443322 122333566665 55555554 88899999876644433222 22336777877765 2
Q ss_pred EEEEecCCeEEEEECCCceEEEee---ecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCc
Q 038802 288 ILSVALDGYMKVFDYGKMKVTHSM---RFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 346 (532)
....-.+--+.+-|..+.+....+ +...++.--.+.-.|++......+.-+-+-+..+.
T Consensus 226 ~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 226 AYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 333333444667777665433333 22222222133334566666666666666666554
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.75 E-value=7.4 Score=35.24 Aligned_cols=231 Identities=15% Similarity=0.075 Sum_probs=140.6
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEe-
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRL- 131 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~- 131 (532)
.-..++-.|||..-+++...+.|--.|..+++....--+....-..+...|||..-++-+.. -|.-.|-++.+. .++
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEee
Confidence 44678889999888888888888888999988877665555666777888888766554433 455555554432 222
Q ss_pred ---cCCCCCEEEEEeecCCCcEEEEEeCC---------CeEEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC
Q 038802 132 ---KSHTRPVRFVKYPFLDKLHLVSGGDD---------GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY 199 (532)
Q Consensus 132 ---~~h~~~i~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 199 (532)
...........|.+ .+++-+++... +.|++|+.. ....-..|+..| ++...++.-.
T Consensus 141 lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atp-dGsvwyasla 208 (353)
T COG4257 141 LPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATP-DGSVWYASLA 208 (353)
T ss_pred cccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECC-CCcEEEEecc
Confidence 22345667788888 88877777531 234444432 222345678888 8888888777
Q ss_pred CCeEEEEEcccCCceeEEEec-CCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCC
Q 038802 200 DHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 277 (532)
+..|-..|..++....+.... ....-..+-.+|.|..-++.. .+.+..||..+..=....+.+.+..-.++.+...
T Consensus 209 gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~-- 286 (353)
T COG4257 209 GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRH-- 286 (353)
T ss_pred ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccC--
Confidence 778888887765332222211 123345556667777766655 6788888876543233444444444555555443
Q ss_pred CCCccccccEEEEEecCCeEEEEECCCce
Q 038802 278 ESGEEAMQYRILSVALDGYMKVFDYGKMK 306 (532)
Q Consensus 278 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 306 (532)
+..-++--..|.|.-+|.++.+
T Consensus 287 -------grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 287 -------GRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred -------CcEEeeccccCceeecCcccce
Confidence 2223323334556666655543
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.55 E-value=3.5 Score=38.16 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEc------CCCCEEEEECCCCceEEEecC-----CCCCEEE
Q 038802 72 SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASD------LSGLIQVFDVKSRTPLRRLKS-----HTRPVRF 140 (532)
Q Consensus 72 d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~ 140 (532)
...|++||..+.+-...-.+-.+.|+.+.|..+.+++++|. ....+..||..+... ..+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 45799999887665554445568999999997777777773 355688899876543 23333 2478888
Q ss_pred EEeecCCCcEEEEEe--CC--CeEEEEEC
Q 038802 141 VKYPFLDKLHLVSGG--DD--GIVKFWDV 165 (532)
Q Consensus 141 ~~~~~~~~~~l~s~s--~d--g~i~iwd~ 165 (532)
+.+...+...+..++ .+ ..|..||=
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 888554554444332 22 23555553
No 465
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.54 E-value=0.92 Score=40.41 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCceeEE-------Ee------cCCCcEEEEEEecCCCEEEEEcCCeEEEEEc
Q 038802 190 NGDMFVTGSYDHTVKLWDVRVENSKSVM-------EV------NHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~------~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~ 250 (532)
+++++++-+.+|.+++||+.+.+..... .. .....|.++.++.+|.-+++-++|..+.||.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 6788999999999999999875432211 00 2345566677777777666666666677764
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.46 E-value=18 Score=39.13 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=101.6
Q ss_pred eEEEEECCCCeEEEeccCC----CCceEEEEEeCCCCC-EEEEEeC-----------CCeEEEEEcccCCcee--EEEec
Q 038802 159 IVKFWDVAGESVVLDLFGH----KDYVRCGDCSPVNGD-MFVTGSY-----------DHTVKLWDVRVENSKS--VMEVN 220 (532)
Q Consensus 159 ~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~-~l~s~s~-----------dg~i~iwd~~~~~~~~--~~~~~ 220 (532)
.|++.|..+++.+..+... .-.+.++.|+..+.. ++++|.. +|.++.|++-...... .....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3777777777665544321 224556666653333 3343332 3446677654322211 11222
Q ss_pred CCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEcc--CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEE
Q 038802 221 HGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSME--SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMK 298 (532)
Q Consensus 221 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 298 (532)
-.+++. +..|...++.+|-+..+++||+... +++.... .-...|+.+++. ..+++.|...-.+.
T Consensus 934 ~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K-~lLRk~e~k~~p~~Is~iqt~-----------~~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAGVGRFLRLYDLGKK-KLLRKCELKFIPNRISSIQTY-----------GARIVVGDIQESVH 999 (1205)
T ss_pred CCccce--EEeccCCEEEEecccEEEEeeCChH-HHHhhhhhccCceEEEEEeec-----------ceEEEEeeccceEE
Confidence 334444 4456666888777899999999765 3333222 235567777775 44677776655555
Q ss_pred E--EECCCceEEEeee--cCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 299 V--FDYGKMKVTHSMR--FPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 299 i--wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
+ |+-...+.+.... .+..|+++.+- |...++.|..-|++.+-++.....+
T Consensus 1000 ~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen 1000 FVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred EEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcchh
Confidence 4 4544455544433 34456666554 4457888888999999988776443
No 467
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.45 E-value=8.9 Score=35.43 Aligned_cols=224 Identities=11% Similarity=0.088 Sum_probs=123.7
Q ss_pred eeEEEEEccCCCEEEEEcCCCCEEEEECC------CC-ceEEEecC-----CCCCEEEEEeecCCC------------cE
Q 038802 95 VVTCSSFRPDGSLLAASDLSGLIQVFDVK------SR-TPLRRLKS-----HTRPVRFVKYPFLDK------------LH 150 (532)
Q Consensus 95 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~------~~-~~~~~~~~-----h~~~i~~~~~~~~~~------------~~ 150 (532)
.-+.++|+|.+.+-++....+...+||.. .. ..+-.+.. .....+.+.|+. .. ..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 34779999999877777778899999986 12 22333331 234567788874 22 23
Q ss_pred EEEEeCCCeEEEEECCCCeE-----EEecc-CCCCce-EEEEEeCC-CCCEEEE-EeCCCeEEEEEcccCCcee--EEE-
Q 038802 151 LVSGGDDGIVKFWDVAGESV-----VLDLF-GHKDYV-RCGDCSPV-NGDMFVT-GSYDHTVKLWDVRVENSKS--VME- 218 (532)
Q Consensus 151 l~s~s~dg~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~--~~~- 218 (532)
++.+++||+|.-|...-+.. ...+. .....| ..+++... .+++|+. --..++|.+||-.-..... .+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67789999999998532211 11222 112223 34454431 2344444 3457889999854321100 000
Q ss_pred --------------ecCCCcEEEEEEecCCCEEEEE-cCCeEEEEEccCCCeeeEEcc--CCCcceEEEEEeccCCCCCc
Q 038802 219 --------------VNHGKPIEDVMFLPSGGLIATA-GGNSVKIWDLIGGGKMVYSME--SHNKTVTSVCVGRVGNESGE 281 (532)
Q Consensus 219 --------------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~ 281 (532)
++..--|+-..-.++++.=+.+ +-|.|-+||+.. ..++.+. +.-..-+.++..|..-.
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG--- 257 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFG--- 257 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhC---
Confidence 0000011111111222111111 246899999754 5666553 23335567777665311
Q ss_pred cccccEEEEEecCCeEEEEECCCceEEEeeecC-------CCeeEEEEec
Q 038802 282 EAMQYRILSVALDGYMKVFDYGKMKVTHSMRFP-------APLMSVAFSP 324 (532)
Q Consensus 282 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~v~~~~~s~ 324 (532)
...+.+|+---.||+|..||..+++.+..+... ..++.++|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 122566666667999999999998877766522 3467788865
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.34 E-value=0.37 Score=46.18 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=98.3
Q ss_pred eeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEE-Eec-CCCC----CEE-EEEeecCCCcEEEEEeCCCeEE
Q 038802 89 ISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLR-RLK-SHTR----PVR-FVKYPFLDKLHLVSGGDDGIVK 161 (532)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~-~h~~----~i~-~~~~~~~~~~~l~s~s~dg~i~ 161 (532)
+...-..|..+-..|||+.+..-+. .++.++++.+..... .+- ...+ .|+ .+.... .+..+++++.||.|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence 4444567788889999999987764 678899887543221 111 1111 111 111122 567788999999998
Q ss_pred EE-ECCCC-e----EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCC
Q 038802 162 FW-DVAGE-S----VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGG 235 (532)
Q Consensus 162 iw-d~~~~-~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 235 (532)
-| |.+.+ . .++.++-....+..+.-.. +.+-+++-+..|++.++.....+... .. .--..+.-+++||++.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL-~~-~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLL-FE-RAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCccee-hh-hhhcCcceeeeCcccc
Confidence 87 44332 1 1222222233444333222 45667888888888888755432222 22 2223566789999999
Q ss_pred EEEEEcCCeEEEEEccCC
Q 038802 236 LIATAGGNSVKIWDLIGG 253 (532)
Q Consensus 236 ~l~~~~d~~i~iwd~~~~ 253 (532)
++++-..|.++++.+.+.
T Consensus 371 ~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 371 YLLSEDQGKIRLAQLENR 388 (733)
T ss_pred hheeecCCceEEEEecCC
Confidence 999988899999998765
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=7.1 Score=33.78 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=88.8
Q ss_pred CCCeEEEEEe--CCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEE-EEcCCCCEEEEECCCCceEEEecCCCCCE
Q 038802 62 TTSHLFAATH--SASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLA-ASDLSGLIQVFDVKSRTPLRRLKSHTRPV 138 (532)
Q Consensus 62 ~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~h~~~i 138 (532)
+|.++.+.+. ...|++||+.+++.+.+..-..+.+..=-...-|.++. -.-.+|.-..+|..+-+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 3444444443 35899999999888766543322222211122233333 23357888899998877777665 34445
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEec----cCC-CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc
Q 038802 139 RFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDL----FGH-KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213 (532)
Q Consensus 139 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (532)
+.++. ++..|+.+....+++.-|.++.....++ .+. -..++-+.|. +|...|-.=.+..|...|..+++.
T Consensus 134 WgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 134 WGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcE
Confidence 66665 4455776666667777776543322221 110 1112223332 333333333333343344444333
Q ss_pred eeEEE-----------ecCCCcEEEEEEecCC-CEEEEEc
Q 038802 214 KSVME-----------VNHGKPIEDVMFLPSG-GLIATAG 241 (532)
Q Consensus 214 ~~~~~-----------~~~~~~v~~i~~~~~~-~~l~~~~ 241 (532)
...+. ..+..-.+.+++.|++ +++++|-
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 22221 1234456788999877 4555543
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.09 E-value=6.6 Score=40.55 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred CccCccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 45 ~~~~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
...+....-++++.-+|.|..++.+..||.|.+||.......+.. ....+-..+.|...| |++..+|..+.-|.
T Consensus 8 s~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 8 SRDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cCCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheee
Confidence 344555667889999999999999999999999998654332211 112233445555444 55555566666665
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=8.4 Score=42.79 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=105.0
Q ss_pred CccccCeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeeccCc-eeEEEEEccCCCEEEEEcCCCCEEEEECCCCc
Q 038802 48 PGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKD-VVTCSSFRPDGSLLAASDLSGLIQVFDVKSRT 126 (532)
Q Consensus 48 ~~h~~~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 126 (532)
.|.......++|+|....+|.++.+|.|++|....-+.......-.. .+..+.+-.......+...+..+.+|......
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc
Confidence 34455677899999999999999999999997654333222111010 11222221111122222334445555443222
Q ss_pred eEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEE----eccCCCCceEEEEEeCCCCCEEEEEeCCCe
Q 038802 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL----DLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202 (532)
Q Consensus 127 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 202 (532)
.+ .+...+++..-.+ --.. +-| ..+.+++||..-..... .+..+...+ ....++...-..... |-.
T Consensus 112 ~~----~~~~~~~~~~~~~-~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~--~~~ 181 (993)
T KOG1983|consen 112 GV----FLKQEITSFVTDP-PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVP-YESLSPTLSIEGLVI--DLD 181 (993)
T ss_pred ee----ecCCcceeccCCC-Ccch-hcc-cCceeeEeeechhhhccceeccccccccce-eeeeccceeeecccc--ccc
Confidence 11 1233334333322 2223 444 78888888865221110 011111000 000000000000000 000
Q ss_pred EEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCCCcc
Q 038802 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282 (532)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 282 (532)
-.+|.+.. .... ...+..++.+..+......+.....+.+-+|+.... .....+.. .....+++
T Consensus 182 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~------- 245 (993)
T KOG1983|consen 182 TVLISLPD--AYLG-LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK-YVQSAYLP-----NGQLESRD------- 245 (993)
T ss_pred cceeeccc--cccc-ccccccccceeeeecCCCcceeeeeeeeeehhcccc-cchhhccc-----ccccCccC-------
Confidence 11111111 0101 112344555555555555555555667777774432 11111111 11111444
Q ss_pred ccccEEEEEecCCeEEEEECCCceE
Q 038802 283 AMQYRILSVALDGYMKVFDYGKMKV 307 (532)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (532)
+..++++..||.+.+||...+..
T Consensus 246 --~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 246 --GSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred --CceEEEEEecCCEEeeecCCCce
Confidence 67899999999999999998755
No 472
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.87 E-value=17 Score=37.35 Aligned_cols=248 Identities=10% Similarity=0.113 Sum_probs=119.6
Q ss_pred cCCCCeEEEEEeCCeEEEEeCCCce--EEEEeecc-CceeEEEEEccCC-CEEEEEcCCC--CEEEEECCCCceEEEecC
Q 038802 60 SPTTSHLFAATHSASLTLFSSQTLE--KHSAISSF-KDVVTCSSFRPDG-SLLAASDLSG--LIQVFDVKSRTPLRRLKS 133 (532)
Q Consensus 60 sp~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~g~~dg--~i~iwd~~~~~~~~~~~~ 133 (532)
..++..++.+..+|.+....+.... .....-+. ....+++.+..+| .+|+.|+.-| .+.-|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4556688889999999887765433 11222222 4455666666555 4677776544 45555544344455554
Q ss_pred CCCCEEEEEeecC---CCc------EEEEEe---CCCeEEEEECCCCeEEE----eccCCC--CceEEEEEeCCCCCEEE
Q 038802 134 HTRPVRFVKYPFL---DKL------HLVSGG---DDGIVKFWDVAGESVVL----DLFGHK--DYVRCGDCSPVNGDMFV 195 (532)
Q Consensus 134 h~~~i~~~~~~~~---~~~------~l~s~s---~dg~i~iwd~~~~~~~~----~~~~~~--~~v~~i~~~~~~~~~l~ 195 (532)
.-+||.+++.-+. ... .+++++ .+|.+++..- |-... ...... ..+..+.....++.+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 5678888888531 122 566654 4678888742 22222 111122 22333332221245666
Q ss_pred EEeCCCeEEEEEcc---cCCceeEE---EecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEc-cCCCcceE
Q 038802 196 TGSYDHTVKLWDVR---VENSKSVM---EVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSM-ESHNKTVT 268 (532)
Q Consensus 196 s~s~dg~i~iwd~~---~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~ 268 (532)
.+..+. -+++.+. ........ .+....+--.+.... +..++=.....|++.+.... +..... ......|.
T Consensus 376 ~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt~~~i~l~~~~~~-~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 376 LSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVTPKGIRLIDLEDG-KLTQEWKPPAGSIIV 452 (504)
T ss_dssp EEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEESSEEEEEESSST-SEEEEEE-TTS---S
T ss_pred EEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEecCeEEEEECCCC-eEEEEEeCCCCCeEE
Confidence 666554 3444443 11111111 111122222222222 45555555667888887655 444333 22344555
Q ss_pred EEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeee------cCCCeeEEEEec
Q 038802 269 SVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR------FPAPLMSVAFSP 324 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~s~ 324 (532)
+.+.. +.+++.+-.++.+..+.+.......... ....|.|+...|
T Consensus 453 ~a~~~-----------~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASIN-----------DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEES-----------SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEC-----------CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 55554 3467777778889999887766543322 567888888776
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.36 E-value=6.7 Score=36.36 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEe------CCCeEEEEECCCCeEEEeccC-----CCCceEE
Q 038802 115 GLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGG------DDGIVKFWDVAGESVVLDLFG-----HKDYVRC 183 (532)
Q Consensus 115 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~ 183 (532)
..|++||..+.+-...-.+-.+.|+++.|.. +...++.|. ....+..||..+..-. .+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 4599999987776655556678999999985 666666654 4567888998876432 2322 2477888
Q ss_pred EEEeCCCCC-EEEEEe-CCC--eEEEEEc
Q 038802 184 GDCSPVNGD-MFVTGS-YDH--TVKLWDV 208 (532)
Q Consensus 184 i~~~~~~~~-~l~s~s-~dg--~i~iwd~ 208 (532)
+.+...+.. +++.|. .+| .|..||=
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 887654444 444443 222 3555553
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.32 E-value=25 Score=38.24 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=99.7
Q ss_pred ccCceeEEEEEc---c----CCCEEEEEcCCCCEEEEEC------CC---------CceEEEecC---CCCCEEEEEeec
Q 038802 91 SFKDVVTCSSFR---P----DGSLLAASDLSGLIQVFDV------KS---------RTPLRRLKS---HTRPVRFVKYPF 145 (532)
Q Consensus 91 ~~~~~v~~~~~~---~----~~~~l~~g~~dg~i~iwd~------~~---------~~~~~~~~~---h~~~i~~~~~~~ 145 (532)
....+|..++|. . ..++|++=. ...+.|+.. .. ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346788999988 2 234666655 455677762 11 022333331 234678899999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCe-----EEEeccCCC----------CceEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 038802 146 LDKLHLVSGGDDGIVKFWDVAGES-----VVLDLFGHK----------DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210 (532)
Q Consensus 146 ~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~~~----------~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 210 (532)
.+...||.....|.-.||++.... .......+. +....+.|.+ +.+.|+.++. ..+.++|+.+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEECCC
Confidence 888999999999999999992111 111111111 2334677877 6666666654 5689999988
Q ss_pred CCcee-EEEecCCCcEEEEEEecCC-CEEEEEcCCeEEEEEccC
Q 038802 211 ENSKS-VMEVNHGKPIEDVMFLPSG-GLIATAGGNSVKIWDLIG 252 (532)
Q Consensus 211 ~~~~~-~~~~~~~~~v~~i~~~~~~-~~l~~~~d~~i~iwd~~~ 252 (532)
..... .........|..+.-+|.. .+++.-....|...|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 65544 3444456778888888862 233333456788888776
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=5 Score=44.24 Aligned_cols=138 Identities=10% Similarity=0.263 Sum_probs=87.0
Q ss_pred eCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCCC--------CEEEEEeCCCeEEEEEcccCC----ce---eEEEe
Q 038802 155 GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNG--------DMFVTGSYDHTVKLWDVRVEN----SK---SVMEV 219 (532)
Q Consensus 155 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~~l~s~s~dg~i~iwd~~~~~----~~---~~~~~ 219 (532)
+.|+.+.+|+.+++.....+.+-+..|..+....... .+|+.++ --.|.++-+.-.+ .. ..+.+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccceee
Confidence 4578999999999887777877776676665432122 2333333 2345554332111 10 11222
Q ss_pred c-CCCcEEEEEEecCCCEEEEEcCCeEEEEEcc----CCC--e-e----------------eEEcc-CCCcceEEEEEec
Q 038802 220 N-HGKPIEDVMFLPSGGLIATAGGNSVKIWDLI----GGG--K-M----------------VYSME-SHNKTVTSVCVGR 274 (532)
Q Consensus 220 ~-~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~----~~~--~-~----------------~~~~~-~~~~~i~~~~~~~ 274 (532)
+ .+..|.++....+|+++.+|.|| .+|.+. .+. + + +..+. .+..+|..+.+..
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2 36778999988899999999888 444432 110 0 0 11222 4567888888876
Q ss_pred cCCCCCccccccEEEEEecCCeEEEEECCC
Q 038802 275 VGNESGEEAMQYRILSVALDGYMKVFDYGK 304 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 304 (532)
. ...+.+-+..|+|.+||+..
T Consensus 253 S---------R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 S---------RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c---------cceeeeeccCceEEEEEccC
Confidence 6 67899999999999999976
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=8.1 Score=42.91 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=106.9
Q ss_pred ceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCC----CEEEEEeecCCCcEEEEEeCCCeEEEEECCCCe
Q 038802 94 DVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTR----PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169 (532)
Q Consensus 94 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~----~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 169 (532)
.....++|+|.-.++|.|+..|.|++|-...-+.. ..|.. .+..+.+-. ..........+..+.+|......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~---~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV---GLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEE---eccccccchhhhheeeee-cccccceeecccceeeecccccc
Confidence 45567889999999999999999999975432222 22221 111222211 11223333344555555543222
Q ss_pred EEEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEEEecCCCcEEEE--EEecCCCEEEEEcCCeEEE
Q 038802 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDV--MFLPSGGLIATAGGNSVKI 247 (532)
Q Consensus 170 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~~d~~i~i 247 (532)
.+. +...+++....+ -..+ +-| ..+.+++||..-.........+........ ..++.-.....-.+-.-..
T Consensus 112 ~~~----~~~~~~~~~~~~-~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 184 (993)
T KOG1983|consen 112 GVF----LKQEITSFVTDP-PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVL 184 (993)
T ss_pred eee----cCCcceeccCCC-Ccch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccce
Confidence 111 222333333322 2233 445 788888888653211111111111111000 0011000000000111122
Q ss_pred EEccCCCeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEecCCC
Q 038802 248 WDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCM 327 (532)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 327 (532)
|.+... . ..+..+...+.+..+... .-...+..-+.+-+|+.......+.+... ...+++++.
T Consensus 185 ~~~~~~--~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 247 (993)
T KOG1983|consen 185 ISLPDA--Y-LGLSLIEYESLQVLYYSP----------TKILIGFNRGLVVIKDRASKYVQSAYLPN----GQLESRDGS 247 (993)
T ss_pred eecccc--c-ccccccccccceeeeecC----------CCcceeeeeeeeeehhcccccchhhcccc----cccCccCCc
Confidence 222111 1 222334444555444433 12444555666777765554443333321 111288999
Q ss_pred EEEEEecCCcEEEEeecCccc
Q 038802 328 TRVIGTSNGTIFAGRRKKKEN 348 (532)
Q Consensus 328 ~l~~g~~dg~i~iw~~~~~~~ 348 (532)
.++++-.||.+.+||...+..
T Consensus 248 ~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 248 HFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eEEEEEecCCEEeeecCCCce
Confidence 999999999999999998743
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=9.7 Score=33.00 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=59.1
Q ss_pred CCCEEEEEcC--CCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCce
Q 038802 104 DGSLLAASDL--SGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV 181 (532)
Q Consensus 104 ~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 181 (532)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-..........-.-.+|.-..+|.++-+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 5566665554 346999999998877654422111111000110222233334678888999988877766542 2233
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEcccCCc
Q 038802 182 RCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213 (532)
Q Consensus 182 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (532)
..++. ++..++.++...+++.-|..+...
T Consensus 134 WgLt~---d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 134 WGLTS---DDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eeeec---CCcceEeeCCceEEEecCHHHhhh
Confidence 34443 445566666566788777766433
No 478
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.76 E-value=27 Score=37.76 Aligned_cols=182 Identities=17% Similarity=0.276 Sum_probs=104.2
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEe--------ccCCCCceEEEEEe-CCCCCEEEEEeCC---CeEEEEEcccC-----
Q 038802 149 LHLVSGGDDGIVKFWDVAGESVVLD--------LFGHKDYVRCGDCS-PVNGDMFVTGSYD---HTVKLWDVRVE----- 211 (532)
Q Consensus 149 ~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~i~~~-~~~~~~l~s~s~d---g~i~iwd~~~~----- 211 (532)
.-+++....|.+++|=.+....... +....+.++..++. ..+|+.++.++.+ +.|++|.+.-.
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 4466677789999997632221111 12234566666665 2256566555555 77888754211
Q ss_pred -----CceeEEEecC----------------------CCcEEEEEEec-------CCCEEEEEc--C---CeEEEEEccC
Q 038802 212 -----NSKSVMEVNH----------------------GKPIEDVMFLP-------SGGLIATAG--G---NSVKIWDLIG 252 (532)
Q Consensus 212 -----~~~~~~~~~~----------------------~~~v~~i~~~~-------~~~~l~~~~--d---~~i~iwd~~~ 252 (532)
+..+.+...| -..++.+.|-+ ...++++.+ + ..|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0111121111 12455666654 122444444 2 3799999876
Q ss_pred CCeeeEEcc-------------------------CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceE
Q 038802 253 GGKMVYSME-------------------------SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307 (532)
Q Consensus 253 ~~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (532)
....++... ...+.|.++..... +.+++.+-.||+|.++|-.+.+.
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~---------~~~v~~~~~DGsI~~~dr~t~~~ 293 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL---------DIVVAFAFSDGSIEFRDRNTMKE 293 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc---------CcEEEEEEcCCeEEEEecCcchh
Confidence 432222110 01234555555444 56888999999999999888755
Q ss_pred EEee----ecC----------------CCeeEEEEecCCCEEEEEecCCcEE
Q 038802 308 THSM----RFP----------------APLMSVAFSPDCMTRVIGTSNGTIF 339 (532)
Q Consensus 308 ~~~~----~~~----------------~~v~~~~~s~~~~~l~~g~~dg~i~ 339 (532)
+... ... .++..++|||.+..++.-..+|.+.
T Consensus 294 ~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 294 LNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred hcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 5433 111 1344588999999999999999966
No 479
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.35 E-value=16 Score=34.46 Aligned_cols=227 Identities=13% Similarity=0.055 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCEEEEECCC--CceEEEecCCCCCEEEEEeecCCCcEEE-EEeCCCeEEEEECCCCeE----------
Q 038802 104 DGSLLAASDLSGLIQVFDVKS--RTPLRRLKSHTRPVRFVKYPFLDKLHLV-SGGDDGIVKFWDVAGESV---------- 170 (532)
Q Consensus 104 ~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~---------- 170 (532)
++++|+.|+.+| +.+.++.. +...+.+ +...|+++...+ ..+.|+ .++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 346899999888 55555654 2333333 567899999988 444444 444455699999842221
Q ss_pred -----EEeccCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccC--CceeEE-----EecCCCcEEEEEEecC--CCE
Q 038802 171 -----VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE--NSKSVM-----EVNHGKPIEDVMFLPS--GGL 236 (532)
Q Consensus 171 -----~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~-----~~~~~~~v~~i~~~~~--~~~ 236 (532)
.....+|.....-..+.......+++++...+|.++..... +..... ......++..+..+++ ...
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 01122333333333333312234445555567777644332 111111 1111234444444443 446
Q ss_pred EEEEcC-CeEEEEEccC--CC--ee-e-EEccCCC-cceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCce--
Q 038802 237 IATAGG-NSVKIWDLIG--GG--KM-V-YSMESHN-KTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMK-- 306 (532)
Q Consensus 237 l~~~~d-~~i~iwd~~~--~~--~~-~-~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-- 306 (532)
++.|++ +...++++.. .. .. . ....... .++....+ ++ +.++++ - |....+.|....+
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~---------~e~Llc-~-~~~~v~Vn~~G~~~~ 235 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PR---------DEFLLC-Y-DEFGVFVNLYGKRRS 235 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CC---------CeEEEE-E-CcEEEEEeCCCCccc
Confidence 666654 2455555532 10 00 0 0000111 22222222 22 233333 2 3344455544312
Q ss_pred EEEeeecCCCeeEEEEecCCCEEEEEecCCcEEEEeecCcccc
Q 038802 307 VTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKENV 349 (532)
Q Consensus 307 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 349 (532)
....+..+..+.++++.. .++++-.. ..|.++++.+++-.
T Consensus 236 r~~~l~w~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~ 275 (302)
T smart00036 236 RNPILHWEFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELL 275 (302)
T ss_pred cceEEEcCCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceE
Confidence 223345566778888774 56666554 45999999988644
No 480
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.99 E-value=19 Score=34.74 Aligned_cols=53 Identities=21% Similarity=0.054 Sum_probs=26.1
Q ss_pred CCcEEEEEeCC-----------CeEEEEECCCCeEEEeccCCCCceEEE-EE-eCCCCCEEEEEeCC
Q 038802 147 DKLHLVSGGDD-----------GIVKFWDVAGESVVLDLFGHKDYVRCG-DC-SPVNGDMFVTGSYD 200 (532)
Q Consensus 147 ~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~i-~~-~~~~~~~l~s~s~d 200 (532)
++.+.+.|+.+ ..+..||..+.+-...-........+. .+ .- ++.+.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~-~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLH-NGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEe-CCEEEEEcCcC
Confidence 66677777653 246778877654322111111111111 11 22 67777877764
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.76 E-value=19 Score=34.37 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCCeEEEEEeC-----CeEEEEeCCCceE---EEEeeccCcee--EEEEEccCCCEEEEEcC-----CCCEEEEECCCCc
Q 038802 62 TTSHLFAATHS-----ASLTLFSSQTLEK---HSAISSFKDVV--TCSSFRPDGSLLAASDL-----SGLIQVFDVKSRT 126 (532)
Q Consensus 62 ~~~~l~~~~~d-----~~v~i~~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~ 126 (532)
++..++.|+.+ ..+..||+.+... ...+..-..+. .+++ .-++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 44555666643 3567777766442 12221111111 1122 225667777764 2358888887654
Q ss_pred eEE--EecCCCCCEEEEEeecCCCcEEEEEeCCC----eEEEEECCCCe
Q 038802 127 PLR--RLKSHTRPVRFVKYPFLDKLHLVSGGDDG----IVKFWDVAGES 169 (532)
Q Consensus 127 ~~~--~~~~h~~~i~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~ 169 (532)
-.. .+.... .....+... ++.+.+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence 322 121111 111121222 667777787654 35678887655
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=4.8 Score=44.42 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCceEEEecCCCCCEEEEEe--------ecCCCcEEEEEeCCCeEEEEECCC----CeE-----EEecc
Q 038802 113 LSGLIQVFDVKSRTPLRRLKSHTRPVRFVKY--------PFLDKLHLVSGGDDGIVKFWDVAG----ESV-----VLDLF 175 (532)
Q Consensus 113 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~--------~~~~~~~l~s~s~dg~i~iwd~~~----~~~-----~~~~~ 175 (532)
.|+.+.+|+.+++.....+.+-...|..+.. .| .=.+++..+.--.|.++-+.- +.. ...+.
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 3788999999998777777776666666653 22 223444444445566654421 111 01122
Q ss_pred CCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcc----cC------Cce-----------e-EEE--ecCCCcEEEEEEe
Q 038802 176 GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR----VE------NSK-----------S-VME--VNHGKPIEDVMFL 231 (532)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~----~~------~~~-----------~-~~~--~~~~~~v~~i~~~ 231 (532)
.....|+|+.... +|+.|++|- || .+|.+- .+ ... + ... ..+..+|..+.+.
T Consensus 176 ~dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 2355788888555 788777665 55 444431 10 000 0 011 1456799999999
Q ss_pred cCCCEEEEEc-CCeEEEEEccCC
Q 038802 232 PSGGLIATAG-GNSVKIWDLIGG 253 (532)
Q Consensus 232 ~~~~~l~~~~-d~~i~iwd~~~~ 253 (532)
....++.+-+ .|+|.+||+...
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cccceeeeeccCceEEEEEccCC
Confidence 8888888888 799999999763
No 483
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.84 E-value=39 Score=36.75 Aligned_cols=126 Identities=8% Similarity=0.048 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCC----ceeEEEecCC----------CcEEEEEEecCCCEEEEEcCCe
Q 038802 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN----SKSVMEVNHG----------KPIEDVMFLPSGGLIATAGGNS 244 (532)
Q Consensus 179 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~----------~~v~~i~~~~~~~~l~~~~d~~ 244 (532)
.+...++|+|.+...||.....|...|||+.... .......... ..-..+.|.++...|+.++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4566899999888899999999999999992111 1111111111 2334788988888899999889
Q ss_pred EEEEEccCCCeee-EEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCC----ceEEEeeec
Q 038802 245 VKIWDLIGGGKMV-YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGK----MKVTHSMRF 313 (532)
Q Consensus 245 i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~ 313 (532)
+.++|+.+..... .........|..+.-++.. ..+++.-. ...|...++.+ .+.+-.++|
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~--------~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH 290 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN--------PSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKH 290 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCc--------cceEEEEe-cCeEEEEEccCCCCCeeeeeeccc
Confidence 9999998764322 2223345678888888874 22333332 25676777665 344555554
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=27 Score=34.82 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred CeEEEEEeCCeEEEEeCCC-ceEEEEeeccCce---------------------eEEEEEccCCCEEEEEcCCCCEEEEE
Q 038802 64 SHLFAATHSASLTLFSSQT-LEKHSAISSFKDV---------------------VTCSSFRPDGSLLAASDLSGLIQVFD 121 (532)
Q Consensus 64 ~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~---------------------v~~~~~~~~~~~l~~g~~dg~i~iwd 121 (532)
+-++.+-.| .+..||.+. .-....+.+..++ |..+..++.|..++-.+.+|.+..+=
T Consensus 53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEc
Q ss_pred CCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCCC--CCEEEEEeC
Q 038802 122 VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN--GDMFVTGSY 199 (532)
Q Consensus 122 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~s~ 199 (532)
......-..+...+..|+|=.|. -+..+++.+ ..-.+..++|+|.. +..+..-+.
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~--i~~~~ftss---------------------~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTP--VAERFFTSS---------------------TSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred hhhcCccceecCCCceEEEEeec--ccceeeccC---------------------CceeeeeccccCCccCCceEEEEec
Q ss_pred CCeEEEEEcccCCceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCCeeeEEccCCCcceEEEEEeccCCCC
Q 038802 200 DHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279 (532)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (532)
|.+|++||+................ +...-+++-+++.+.+-........+...+.-....+-+..|+.
T Consensus 189 dnviRiy~lS~~telylqpgepgRS-------~tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~l~~S~k---- 257 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTELYLQPGEPGRS-------PTNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGPLAASPK---- 257 (741)
T ss_pred CcEEEEEecCCcchhhccCCCcCCC-------CccceeeccCCcceeeeccCcccccccCchhhccCccccccCcc----
Q ss_pred CccccccEEEEEecCCeEEEEEC
Q 038802 280 GEEAMQYRILSVALDGYMKVFDY 302 (532)
Q Consensus 280 ~~~~~~~~l~s~~~dg~i~iwd~ 302 (532)
.++.....+.+.....
T Consensus 258 -------tL~~~nSs~k~E~iE~ 273 (741)
T KOG4460|consen 258 -------TLFGQNSSGKDEVVEY 273 (741)
T ss_pred -------ceeeecccccceeEec
No 485
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.70 E-value=6.3 Score=40.71 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=47.0
Q ss_pred CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEEC
Q 038802 93 KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV 165 (532)
Q Consensus 93 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~ 165 (532)
...++++.-+|.|.-++.+..||+|++|+....+...... ...+-..+.|. +.-++++..|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~t---nhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFT---NHGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeee---ccceEEEeccchhheeec
Confidence 3467788888999999999999999999986554322221 22233445564 233777777888878864
No 486
>PLN02153 epithiospecifier protein
Probab=88.69 E-value=24 Score=34.03 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCeEEE--ecc----CCCCceEEEEEeCCCCCEEEEEeCC-----------CeEE
Q 038802 147 DKLHLVSGGDD-----GIVKFWDVAGESVVL--DLF----GHKDYVRCGDCSPVNGDMFVTGSYD-----------HTVK 204 (532)
Q Consensus 147 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~----~~~~~v~~i~~~~~~~~~l~s~s~d-----------g~i~ 204 (532)
++.+++.|+.+ ..+.+||..+.+-.. .+. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 56677777653 357788887654321 111 001111122222 56677777754 2477
Q ss_pred EEEcccC
Q 038802 205 LWDVRVE 211 (532)
Q Consensus 205 iwd~~~~ 211 (532)
+||..+.
T Consensus 163 ~yd~~~~ 169 (341)
T PLN02153 163 AYNIADG 169 (341)
T ss_pred EEECCCC
Confidence 8888764
No 487
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.05 E-value=37 Score=35.47 Aligned_cols=157 Identities=12% Similarity=0.171 Sum_probs=84.4
Q ss_pred CCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCcee--EEEecCCCcEEEEEEec------CCCEEEE-Ec-C---Ce
Q 038802 178 KDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS--VMEVNHGKPIEDVMFLP------SGGLIAT-AG-G---NS 244 (532)
Q Consensus 178 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~------~~~~l~~-~~-d---~~ 244 (532)
.+.|..+.+.+ ++..+++...+|.|.+||........ .....+...+.--+|-+ ...++++ +. + -.
T Consensus 129 ~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 56788899997 88999999999999999993322221 12222222111112222 1223333 32 2 26
Q ss_pred EEEEEccCCCeeeEEcc---CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCC------
Q 038802 245 VKIWDLIGGGKMVYSME---SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPA------ 315 (532)
Q Consensus 245 i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 315 (532)
.+++.+......+..+. .+........|+... |. ++-- .++.|.+|++.+.+..+++..+.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~--------G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~ 277 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQF--------GK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES 277 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeC--------CE-EEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence 78888832222233332 222222333333321 22 2222 67899999999998888887542
Q ss_pred -CeeEEEEecCCCEEEEEecCCcEEEEeecCcc
Q 038802 316 -PLMSVAFSPDCMTRVIGTSNGTIFAGRRKKKE 347 (532)
Q Consensus 316 -~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 347 (532)
.+.++.- |..+.++. +.++.|++.|+.-+.
T Consensus 278 ~~~vSl~~-~s~nRvLL-s~~nkIyLld~~~~s 308 (670)
T PF10395_consen 278 DDLVSLKP-PSPNRVLL-SVNNKIYLLDLKFES 308 (670)
T ss_pred ccceEeec-CCCCeEEE-EcCCEEEEEeehhhh
Confidence 2333322 23333333 346689999887653
No 488
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.90 E-value=18 Score=31.71 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=67.3
Q ss_pred cEEEEEeCCCeEEEEECC--CCeEEEeccCCCCceEEEEEeCCCCCEEEEEeCC------CeEEEE---Eccc--CC---
Q 038802 149 LHLVSGGDDGIVKFWDVA--GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD------HTVKLW---DVRV--EN--- 212 (532)
Q Consensus 149 ~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d------g~i~iw---d~~~--~~--- 212 (532)
+.|+.+...+.|.+|++. ..+....+.. -+.|..+.++. .|++++|-=.+ ..+++| +... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 556565677889999988 3345555553 37888999998 89999985332 255664 2210 00
Q ss_pred ------------------ceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCC
Q 038802 213 ------------------SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG 253 (532)
Q Consensus 213 ------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~ 253 (532)
.......+...++.+++..|...-|+.|+++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 12233344566778888888555566677889999988643
No 489
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=87.89 E-value=45 Score=36.33 Aligned_cols=254 Identities=10% Similarity=0.059 Sum_probs=130.4
Q ss_pred EEEcCCCCeEEEEEeCCeEEEEeCCCceE---------EEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCC---
Q 038802 57 IVFSPTTSHLFAATHSASLTLFSSQTLEK---------HSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKS--- 124 (532)
Q Consensus 57 i~~sp~~~~l~~~~~d~~v~i~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--- 124 (532)
-.+-++...+++.+.+|.|+-.+..+... ...+.. .+.+..+........|+..++.|.+.......
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34556677788899999998876543221 111222 34555555555666677777788776665421
Q ss_pred ------CceE---EEecCCCCCEEEEEeec-CCCcEEEEEeCCCeEEEEECCCCe-------EEEeccCCCCceEEEEEe
Q 038802 125 ------RTPL---RRLKSHTRPVRFVKYPF-LDKLHLVSGGDDGIVKFWDVAGES-------VVLDLFGHKDYVRCGDCS 187 (532)
Q Consensus 125 ------~~~~---~~~~~h~~~i~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~ 187 (532)
|..+ ..+.....-+.++.... .+...++..+.+|.++-.++.... ....+.. .+.+..+...
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~ 647 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLT 647 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEe
Confidence 1122 12222223344454321 145679999999999988765322 1122222 3445444444
Q ss_pred CCCCCEEEEEeCCCeEEEEEcccC-------CceeEEEecCCCcEEEEEEecCCCEEEEEc-CCeEEEEEccCC------
Q 038802 188 PVNGDMFVTGSYDHTVKLWDVRVE-------NSKSVMEVNHGKPIEDVMFLPSGGLIATAG-GNSVKIWDLIGG------ 253 (532)
Q Consensus 188 ~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~------ 253 (532)
. ....++..+..|.+..+....- ..........+..|.++....++..++..+ .|.++...+..-
T Consensus 648 ~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~ 726 (800)
T TIGR01063 648 S-GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG 726 (800)
T ss_pred C-CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence 4 4455666677787666654321 122223334455566655444444444444 787777765321
Q ss_pred --CeeeEEccCCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEEec
Q 038802 254 --GKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSP 324 (532)
Q Consensus 254 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 324 (532)
+.....+......+..+..... ...++..+.+|.+..++...-.... +....|..+....
T Consensus 727 ~kGv~~ikl~~~~d~lv~~~~v~~---------~~~v~liT~~G~~lrf~~~eI~~~g--R~a~GVk~i~L~~ 788 (800)
T TIGR01063 727 GKGVKSIKITDRNGQVVGAIAVDD---------DDELMLITSAGKLIRTSVQDVSEQG--RNTQGVRLIRLDE 788 (800)
T ss_pred CcceEEEEccCCCCeEEEEEEecC---------CCeEEEEecCCeEEEeeHhhCCccc--cCCCCeeeeeeCC
Confidence 1112222222234444433332 2346666778877777655422111 1223455555543
No 490
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.70 E-value=3.8 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCEEEEEeecC-----CCcEEEEEeCCCeEEEEECCC
Q 038802 136 RPVRFVKYPFL-----DKLHLVSGGDDGIVKFWDVAG 167 (532)
Q Consensus 136 ~~i~~~~~~~~-----~~~~l~s~s~dg~i~iwd~~~ 167 (532)
..+..++|+|. .+.+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47899999982 356888999999999998653
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.21 E-value=32 Score=33.87 Aligned_cols=230 Identities=13% Similarity=0.007 Sum_probs=0.0
Q ss_pred CeeEEEEcCCCCeEEEEEeCCeEEEEeCCCceEEEEeecc---CceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEE
Q 038802 53 SINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSF---KDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLR 129 (532)
Q Consensus 53 ~V~~i~~sp~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 129 (532)
+..++.|. ++...+++..| +.+...+.|+.-..+... ......+....++...+++ ..|.|..-+ +.++.-.
T Consensus 138 ~l~~v~f~--~~~g~~vG~~G-~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~-D~G~tW~ 212 (398)
T PLN00033 138 RFNSISFK--GKEGWIIGKPA-ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVT-DEGAIYVTS-NAGRNWK 212 (398)
T ss_pred ceeeeEEE--CCEEEEEcCce-EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEe-ccceEEEEC-CCCCCce
Q ss_pred Ee--------------------cCCCCCEEEEEeecCCCcEEEEEeCCCeEEEEECCCCeEEEeccCCCCceEEEEEeCC
Q 038802 130 RL--------------------KSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPV 189 (532)
Q Consensus 130 ~~--------------------~~h~~~i~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 189 (532)
.. ....+....+..++ ++.+++.+.....++-||--...-...-......+.++.+.+
T Consensus 213 ~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~- 290 (398)
T PLN00033 213 AAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA- 290 (398)
T ss_pred EcccccccccccccccccccccceeccceeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-
Q ss_pred CCCEEEEEeCCCeEEEEEcccC-----CceeEEEecCCCcEEEEEEecCCCEEEEEcCCeEEEEEccCCC-eeeEEccCC
Q 038802 190 NGDMFVTGSYDHTVKLWDVRVE-----NSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGG-KMVYSMESH 263 (532)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~ 263 (532)
++.+++++ .+|.+..-+-... .............+.++.|.+++..++++.+|.+....-.... +.......-
T Consensus 291 dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~ 369 (398)
T PLN00033 291 DGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNI 369 (398)
T ss_pred CCCEEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCC
Q ss_pred CcceEEEEEeccCCCCCccccccEEEEEecCCeEEEE
Q 038802 264 NKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300 (532)
Q Consensus 264 ~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 300 (532)
....+.+.|.++ ...+..+.+|.|.-|
T Consensus 370 ~~~ly~v~f~~~----------~~g~~~G~~G~il~~ 396 (398)
T PLN00033 370 AANLYSVKFFDD----------KKGFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEEEEcCC----------CceEEEeCCcEEEEe
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.05 E-value=3.2 Score=35.40 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=26.7
Q ss_pred CCeeEEEEecCC------CEEEEEecCCcEEEEeecCc
Q 038802 315 APLMSVAFSPDC------MTRVIGTSNGTIFAGRRKKK 346 (532)
Q Consensus 315 ~~v~~~~~s~~~------~~l~~g~~dg~i~iw~~~~~ 346 (532)
..+.+++|||.| ..|++-+.+|.|.+|.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999954 57889999999999998754
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.89 E-value=32 Score=34.35 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=25.4
Q ss_pred CCeeEEEEecCCCEEEEEecCCcEEEEeecC
Q 038802 315 APLMSVAFSPDCMTRVIGTSNGTIFAGRRKK 345 (532)
Q Consensus 315 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 345 (532)
..|.++...+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999985
No 494
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.63 E-value=34 Score=33.54 Aligned_cols=53 Identities=21% Similarity=0.087 Sum_probs=25.7
Q ss_pred CCcEEEEEeCC-----------CeEEEEECCCCeEEEeccCCCCce--EEEEEeCCCCCEEEEEeCC
Q 038802 147 DKLHLVSGGDD-----------GIVKFWDVAGESVVLDLFGHKDYV--RCGDCSPVNGDMFVTGSYD 200 (532)
Q Consensus 147 ~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~s~d 200 (532)
++.+.+.|+.+ ..+..||..+.+-...-....... .+....- ++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEee-CCEEEEECCCC
Confidence 56666666643 246778877654322111001111 1111112 67777877754
No 495
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.44 E-value=3.9 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=27.1
Q ss_pred cEEEEEecCCeEEEEECCCceEEEeeecCCCeeEEEE
Q 038802 286 YRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAF 322 (532)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 322 (532)
..+++...++.|.++|..+++.+..+........++|
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 3445555688999999999999888876555556555
No 496
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.01 E-value=36 Score=33.32 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=26.6
Q ss_pred cCCCEEEEEcCC-----------CCEEEEECCCCceEEEecCCCCCE--EEEEeecCCCcEEEEEeCC
Q 038802 103 PDGSLLAASDLS-----------GLIQVFDVKSRTPLRRLKSHTRPV--RFVKYPFLDKLHLVSGGDD 157 (532)
Q Consensus 103 ~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~h~~~i--~~~~~~~~~~~~l~s~s~d 157 (532)
-++.+.+.|+.+ ..+..||..+.+-...-....... .+..... ++.+.+.|+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~ 149 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVN 149 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEee-CCEEEEECCCC
Confidence 366677777643 247778877654322211111111 1111112 67777777754
No 497
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.69 E-value=5.8 Score=41.20 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=46.3
Q ss_pred CCCCeEEEEEeCCeEEEEeCCC----ceEEEEe--ecc--------------------CceeEEEEEcc----CCCEEEE
Q 038802 61 PTTSHLFAATHSASLTLFSSQT----LEKHSAI--SSF--------------------KDVVTCSSFRP----DGSLLAA 110 (532)
Q Consensus 61 p~~~~l~~~~~d~~v~i~~~~~----~~~~~~~--~~~--------------------~~~v~~~~~~~----~~~~l~~ 110 (532)
++...++++..||.+....... +...... ..+ ...+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566888888999888776543 2111111 110 23455566666 7789999
Q ss_pred EcCCCCEEEEECCCCceEEEecCC
Q 038802 111 SDLSGLIQVFDVKSRTPLRRLKSH 134 (532)
Q Consensus 111 g~~dg~i~iwd~~~~~~~~~~~~h 134 (532)
.+.|+++++||+.+++++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999998776543
No 498
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.10 E-value=62 Score=35.15 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=99.2
Q ss_pred eEEEEEeCCeEEEEeCCC-ceEEEE-------eeccCceeEEEEEc--cCCCEEEEEcCC---CCEEEEECCC--C----
Q 038802 65 HLFAATHSASLTLFSSQT-LEKHSA-------ISSFKDVVTCSSFR--PDGSLLAASDLS---GLIQVFDVKS--R---- 125 (532)
Q Consensus 65 ~l~~~~~d~~v~i~~~~~-~~~~~~-------~~~~~~~v~~~~~~--~~~~~l~~g~~d---g~i~iwd~~~--~---- 125 (532)
-+++.+..|.+++|=.+. ++.... +....+.++..++. .+|+.++.++.+ +.|++|.+.- +
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 456677789999986532 222111 12234567766665 466555544444 7888875420 0
Q ss_pred ----c--eEEEec----------C-----------CCCCEEEEEeec-----C-CCcEEEEEeC----CCeEEEEECCCC
Q 038802 126 ----T--PLRRLK----------S-----------HTRPVRFVKYPF-----L-DKLHLVSGGD----DGIVKFWDVAGE 168 (532)
Q Consensus 126 ----~--~~~~~~----------~-----------h~~~i~~~~~~~-----~-~~~~l~s~s~----dg~i~iwd~~~~ 168 (532)
+ +...+. . .-..++.+.|-+ . ....+++.+. ...|..|.+...
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 0 000000 0 113566677654 1 2234444432 346899987543
Q ss_pred e-EEEec-------------------------cCCCCceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE-----
Q 038802 169 S-VVLDL-------------------------FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM----- 217 (532)
Q Consensus 169 ~-~~~~~-------------------------~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----- 217 (532)
. .++.. ......|.+++... -+.+++..-.||+|.++|-.+.+.....
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 1 11111 01234566777665 6778999999999999997765332222
Q ss_pred -------------EecCCCcEEEEEEecCCCEEEEEc-CCeEE
Q 038802 218 -------------EVNHGKPIEDVMFLPSGGLIATAG-GNSVK 246 (532)
Q Consensus 218 -------------~~~~~~~v~~i~~~~~~~~l~~~~-d~~i~ 246 (532)
.++...++..++|||++..++.-. +|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 111222444578999888777776 66654
No 499
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.53 E-value=24 Score=31.94 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=75.3
Q ss_pred EEEEECCCCeEEEeccCCCCceEEEEEeCCCCCEEEEEeC-C--CeEEEEEcccCCceeEEE-----ecCCCcEEEEEEe
Q 038802 160 VKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSY-D--HTVKLWDVRVENSKSVME-----VNHGKPIEDVMFL 231 (532)
Q Consensus 160 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-d--g~i~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~ 231 (532)
-.+||+.+++.............+-.+.+ +|.++.+|+. | ..+++++........... ......--+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45788887764332222222333345667 8999999876 2 347788754311111111 1223333455566
Q ss_pred cCCCEEEEEc-C-CeEEEEEccCCC-eeeE--Ecc-----CCCcceEEEEEeccCCCCCccccccEEEEEecCCeEEEEE
Q 038802 232 PSGGLIATAG-G-NSVKIWDLIGGG-KMVY--SME-----SHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301 (532)
Q Consensus 232 ~~~~~l~~~~-d-~~i~iwd~~~~~-~~~~--~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 301 (532)
|||+.++.|+ . .+..+|.-.... .... .+. ....--..+...|+ +++++.+..++ .|||
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd---------G~lFi~an~~s--~i~d 195 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD---------GNLFIFANRGS--IIYD 195 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCC---------CCEEEEEcCCc--EEEe
Confidence 7999999888 3 355566542211 1111 111 01112234566677 56777776553 4679
Q ss_pred CCCceEEEeee
Q 038802 302 YGKMKVTHSMR 312 (532)
Q Consensus 302 ~~~~~~~~~~~ 312 (532)
..+.+.+..+.
T Consensus 196 ~~~n~v~~~lP 206 (243)
T PF07250_consen 196 YKTNTVVRTLP 206 (243)
T ss_pred CCCCeEEeeCC
Confidence 88887766654
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.14 E-value=52 Score=33.48 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCeEEEE---EeCCeEEEEeCCCceEEEEeeccCceeEEEEEccCCCEEEEEcCCCCEEEEECCCCceEEEecCCCCC
Q 038802 61 PTTSHLFAA---THSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPDGSLLAASDLSGLIQVFDVKSRTPLRRLKSHTRP 137 (532)
Q Consensus 61 p~~~~l~~~---~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 137 (532)
.++=+++.. ...+...++| .+|.....+.........+...++|.+++... +.+..+|+. |+.+..+....+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Q ss_pred ---EEEEEeecCCCcEEEEEe--------------CCCeEEEEECCCCeEEEec--cCCC--------------------
Q 038802 138 ---VRFVKYPFLDKLHLVSGG--------------DDGIVKFWDVAGESVVLDL--FGHK-------------------- 178 (532)
Q Consensus 138 ---i~~~~~~~~~~~~l~s~s--------------~dg~i~iwd~~~~~~~~~~--~~~~-------------------- 178 (532)
=..+...| ++++|+.+. .|. |..+| .+|+.+... ..|-
T Consensus 189 ~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 189 YDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp E-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred cccccccEECC-CCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Q ss_pred -----CceEEEEEeCCCCCEEEEEeCCCeEEEEEcccCCceeEE
Q 038802 179 -----DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217 (532)
Q Consensus 179 -----~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (532)
-.++++.+.+.++.+++++-.-..|...|.++++..-.+
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Done!