Query 038803
Match_columns 83
No_of_seqs 89 out of 109
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 100.0 1.6E-29 3.5E-34 171.7 6.6 75 1-83 1-81 (181)
2 PF15072 DUF4539: Domain of un 74.6 20 0.00042 23.2 6.1 54 9-81 20-74 (86)
3 cd00307 RuBisCO_small_like Rib 58.1 10 0.00022 24.6 2.3 17 29-45 43-66 (84)
4 PF11211 DUF2997: Protein of u 55.0 11 0.00024 22.0 1.9 14 13-26 3-16 (48)
5 PRK06944 sulfur carrier protei 54.8 19 0.00041 20.8 2.9 27 16-42 4-33 (65)
6 cd00565 ThiS ThiaminS ubiquiti 54.6 23 0.00049 20.8 3.3 22 16-37 3-24 (65)
7 cd02980 TRX_Fd_family Thioredo 52.8 20 0.00043 21.0 2.8 28 1-34 44-71 (77)
8 cd03527 RuBisCO_small Ribulose 51.8 14 0.00031 24.6 2.3 17 29-45 58-81 (99)
9 PF00101 RuBisCO_small: Ribulo 51.8 15 0.00032 24.5 2.3 12 34-45 69-80 (99)
10 cd03063 TRX_Fd_FDH_beta TRX-li 51.3 19 0.00041 23.5 2.7 29 1-33 42-70 (92)
11 COG1504 Uncharacterized conser 48.0 7.8 0.00017 27.1 0.5 18 13-30 23-40 (121)
12 PF07593 UnbV_ASPIC: ASPIC and 47.4 22 0.00048 21.4 2.5 17 11-27 46-62 (71)
13 PRK06437 hypothetical protein; 46.3 42 0.0009 20.2 3.6 21 22-42 15-38 (67)
14 cd00265 MADS_MEF2_like MEF2 (m 43.4 27 0.0006 21.7 2.5 27 10-37 42-68 (77)
15 PF06483 ChiC: Chitinase C; I 43.4 38 0.00083 25.1 3.6 64 16-79 68-142 (180)
16 COG4996 Predicted phosphatase 39.9 40 0.00087 24.5 3.2 36 13-48 31-66 (164)
17 TIGR01683 thiS thiamine biosyn 39.8 42 0.00091 19.6 2.8 22 16-37 2-23 (64)
18 PF06572 DUF1131: Protein of u 39.3 9.3 0.0002 28.0 -0.1 18 63-80 151-168 (171)
19 cd02670 Peptidase_C19N A subfa 38.7 84 0.0018 23.5 4.9 13 37-49 181-193 (241)
20 CHL00130 rbcS ribulose-1,5-bis 38.4 30 0.00065 24.7 2.3 27 19-45 41-83 (138)
21 smart00432 MADS MADS domain. 37.9 29 0.00063 20.9 1.9 19 9-27 41-59 (59)
22 PF02824 TGS: TGS domain; Int 37.9 55 0.0012 19.1 3.1 25 13-37 2-26 (60)
23 PF13098 Thioredoxin_2: Thiore 37.1 50 0.0011 20.2 3.0 25 11-35 85-110 (112)
24 PRK07696 sulfur carrier protei 36.1 69 0.0015 19.1 3.4 20 16-35 4-24 (67)
25 PRK10718 RpoE-regulated lipopr 35.9 15 0.00033 27.4 0.5 18 63-80 171-188 (191)
26 PF15631 Imm-NTF2-2: NTF2 fold 34.6 56 0.0012 20.4 2.9 18 9-26 47-64 (66)
27 PF00319 SRF-TF: SRF-type tran 33.7 54 0.0012 19.2 2.6 15 10-24 35-49 (51)
28 TIGR01643 YD_repeat_2x YD repe 33.2 61 0.0013 16.9 2.6 15 12-26 8-22 (42)
29 PF05862 IceA2: Helicobacter p 30.6 50 0.0011 20.4 2.1 15 11-25 37-51 (59)
30 PF12969 DUF3857: Domain of Un 30.5 42 0.00091 22.3 2.0 24 4-27 38-61 (177)
31 PF06145 Corona_NS1: Coronavir 24.6 66 0.0014 17.2 1.6 15 14-28 15-29 (29)
32 PF08428 Rib: Rib/alpha-like r 24.3 66 0.0014 19.3 1.9 22 9-30 42-63 (65)
33 PF06251 Caps_synth_GfcC: Caps 24.0 79 0.0017 22.9 2.5 19 7-25 164-182 (229)
34 cd06409 PB1_MUG70 The MUG70 pr 23.8 1.3E+02 0.0029 19.4 3.4 25 11-35 2-28 (86)
35 PF11357 Spy1: Cell cycle regu 23.5 36 0.00079 23.9 0.7 12 31-42 115-126 (131)
36 KOG3542 cAMP-regulated guanine 23.0 67 0.0015 29.2 2.3 26 10-35 332-364 (1283)
37 PRK05659 sulfur carrier protei 22.7 1.7E+02 0.0036 16.8 4.8 22 15-36 3-24 (66)
38 PLN02289 ribulose-bisphosphate 22.0 82 0.0018 23.3 2.3 17 29-45 134-157 (176)
39 cd01668 TGS_RelA_SpoT TGS_RelA 21.1 1.2E+02 0.0025 16.5 2.4 23 14-36 3-25 (60)
40 PRK10382 alkyl hydroperoxide r 21.1 1.8E+02 0.0038 20.7 3.8 25 11-35 121-150 (187)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=99.96 E-value=1.6e-29 Score=171.65 Aligned_cols=75 Identities=39% Similarity=0.614 Sum_probs=66.3
Q ss_pred Ccchhhh------hceeeEEEcCCCeeEEEeecccHHHHHhhCCCcEEEeeecCcCcCCCCCcceeeeEeeCCCccccCC
Q 038803 1 MGNCQAA------EAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIG 74 (83)
Q Consensus 1 MGNC~A~------d~a~v~I~hp~GkVe~~~~~vsA~eVM~~nPgH~Va~~~~~~~~~~~~~~~~~riklL~Pd~~L~~G 74 (83)
||||++. +..+++|+|+||+|++|++|++|+|||.+||||||++.-. ....+++++|+|||+|+.|
T Consensus 1 MGn~~~~~~~~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~--------~~~~~~~~~l~~d~~L~~G 72 (181)
T PF14009_consen 1 MGNCVSCCLASSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDS--------FRFGRRIKPLPPDEELQPG 72 (181)
T ss_pred CCCcccccccccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEecccc--------ccCCCcccCCCccCeecCC
Confidence 9999997 8899999999999999999999999999999999965310 1113899999999999999
Q ss_pred cEEEEeecC
Q 038803 75 RVYRLISFE 83 (83)
Q Consensus 75 ~~Y~Li~~~ 83 (83)
++|||+|.+
T Consensus 73 ~~Y~llP~~ 81 (181)
T PF14009_consen 73 QIYFLLPMS 81 (181)
T ss_pred CEEEEEEcc
Confidence 999999974
No 2
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=74.58 E-value=20 Score=23.22 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=38.2
Q ss_pred ceeeEEEcCCCeeEEEeecccHHHHHhhCCCcEEEeeecCcCcCCCCC-cceeeeEeeCCCccccCCcEEEEee
Q 038803 9 AATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENG-LPVKQLKLLRPDDTLLIGRVYRLIS 81 (83)
Q Consensus 9 ~a~v~I~hp~GkVe~~~~~vsA~eVM~~nPgH~Va~~~~~~~~~~~~~-~~~~riklL~Pd~~L~~G~~Y~Li~ 81 (83)
.+.+.+.+|.|.++ +.+- .+|+.+||+.... |. .-++++.++.|. ....|..|+
T Consensus 20 D~~v~l~DpTG~i~---~tiH-~~v~~~y~~~l~~-----------GavLlLk~V~Vf~ps----~~~~yLnIt 74 (86)
T PF15072_consen 20 DAFVVLKDPTGEIR---GTIH-RKVLEEYGDELSP-----------GAVLLLKDVTVFSPS----PRSHYLNIT 74 (86)
T ss_pred CeEEEEECCCCcEE---EEEe-HHHHhhcCCcccc-----------CEEEEEeeeeEEecC----CCccEEEEe
Confidence 45778999999655 4555 8999999988762 12 224999999998 445666665
No 3
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=58.07 E-value=10 Score=24.63 Aligned_cols=17 Identities=35% Similarity=0.825 Sum_probs=13.2
Q ss_pred cHHHHH-------hhCCCcEEEee
Q 038803 29 SAIEIM-------NSNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM-------~~nPgH~Va~~ 45 (83)
+++||| ++||||||-++
T Consensus 43 ~~~~Vl~el~~c~~~~p~~YVRli 66 (84)
T cd00307 43 SEAQVLAALEACLAEHPGEYVRLI 66 (84)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456665 78999999876
No 4
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=55.03 E-value=11 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.4
Q ss_pred EEEcCCCeeEEEee
Q 038803 13 VIQHPGNKIERIYW 26 (83)
Q Consensus 13 ~I~hp~GkVe~~~~ 26 (83)
.+++|||+|++=-.
T Consensus 3 ~~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 3 FTIYPDGRVEEEVE 16 (48)
T ss_pred EEECCCcEEEEEEE
Confidence 46799999987533
No 5
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=54.78 E-value=19 Score=20.84 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=20.4
Q ss_pred cCCCeeEEEeecccHHHHHhhC---CCcEE
Q 038803 16 HPGNKIERIYWSVSAIEIMNSN---PGHYV 42 (83)
Q Consensus 16 hp~GkVe~~~~~vsA~eVM~~n---PgH~V 42 (83)
.-||+..++....|++|+..+. |+..|
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v 33 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAV 33 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEE
Confidence 4589998998889999998743 55444
No 6
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=54.59 E-value=23 Score=20.78 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=18.2
Q ss_pred cCCCeeEEEeecccHHHHHhhC
Q 038803 16 HPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 16 hp~GkVe~~~~~vsA~eVM~~n 37 (83)
.-||+..++..+.|++++++..
T Consensus 3 ~iNg~~~~~~~~~tv~~ll~~l 24 (65)
T cd00565 3 TVNGEPREVEEGATLAELLEEL 24 (65)
T ss_pred EECCeEEEcCCCCCHHHHHHHc
Confidence 3478899999899999999754
No 7
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=52.75 E-value=20 Score=21.02 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=17.7
Q ss_pred CcchhhhhceeeEEEcCCCeeEEEeecccHHHHH
Q 038803 1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIM 34 (83)
Q Consensus 1 MGNC~A~d~a~v~I~hp~GkVe~~~~~vsA~eVM 34 (83)
||+|... -++++.|+| .+|..+++.++.
T Consensus 44 lg~C~~~---P~v~i~~~~---~~y~~v~~~~~~ 71 (77)
T cd02980 44 LGACGLA---PVVVVYPDG---VWYGRVTPEDVE 71 (77)
T ss_pred cCcccCC---CEEEEeCCC---eEEccCCHHHHH
Confidence 6888663 334556755 478778776553
No 8
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=51.77 E-value=14 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.706 Sum_probs=13.9
Q ss_pred cHHHHH-------hhCCCcEEEee
Q 038803 29 SAIEIM-------NSNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM-------~~nPgH~Va~~ 45 (83)
.+++|| ++||||||.++
T Consensus 58 d~~~Vl~ei~~C~~~~p~~YVRli 81 (99)
T cd03527 58 DPAQVLREIEACRKAYPDHYVRVV 81 (99)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 577777 68999999876
No 9
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=51.77 E-value=15 Score=24.46 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=10.3
Q ss_pred HhhCCCcEEEee
Q 038803 34 MNSNPGHYVALL 45 (83)
Q Consensus 34 M~~nPgH~Va~~ 45 (83)
+++||||||.++
T Consensus 69 ~~~~p~~yVRli 80 (99)
T PF00101_consen 69 LAEHPGEYVRLI 80 (99)
T ss_dssp HHHSTTSEEEEE
T ss_pred HHhCCCceEEEE
Confidence 478999999875
No 10
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=51.29 E-value=19 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=19.9
Q ss_pred CcchhhhhceeeEEEcCCCeeEEEeecccHHHH
Q 038803 1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEI 33 (83)
Q Consensus 1 MGNC~A~d~a~v~I~hp~GkVe~~~~~vsA~eV 33 (83)
||=|..-- .|.|++|+|+ -+|..|++.++
T Consensus 42 ~G~C~~eP--lV~V~~p~g~--v~Y~~V~~edv 70 (92)
T cd03063 42 RGMYWLEP--LVEVETPGGR--VAYGPVTPADV 70 (92)
T ss_pred ceecCCCC--EEEEEeCCCc--EEEEeCCHHHH
Confidence 55565522 3356679988 69999998664
No 11
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=48.01 E-value=7.8 Score=27.06 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.9
Q ss_pred EEEcCCCeeEEEeecccH
Q 038803 13 VIQHPGNKIERIYWSVSA 30 (83)
Q Consensus 13 ~I~hp~GkVe~~~~~vsA 30 (83)
.+++|||+|++...++|-
T Consensus 23 Ivi~~dG~v~rr~K~lsk 40 (121)
T COG1504 23 IVIRPDGKVERREKELSK 40 (121)
T ss_pred EEEecCCceehhhhhhhh
Confidence 378999999998877763
No 12
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=47.41 E-value=22 Score=21.42 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.0
Q ss_pred eeEEEcCCCeeEEEeec
Q 038803 11 TVVIQHPGNKIERIYWS 27 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~ 27 (83)
.++|.=|||+++++...
T Consensus 46 ~v~V~WP~G~~~~~~~~ 62 (71)
T PF07593_consen 46 SVEVRWPDGKVQTLENV 62 (71)
T ss_pred EEEEECCCCCEEEEEcc
Confidence 35788999999998764
No 13
>PRK06437 hypothetical protein; Provisional
Probab=46.28 E-value=42 Score=20.19 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=13.4
Q ss_pred EEEeecccHHHHHh---hCCCcEE
Q 038803 22 ERIYWSVSAIEIMN---SNPGHYV 42 (83)
Q Consensus 22 e~~~~~vsA~eVM~---~nPgH~V 42 (83)
.++....|++|+++ -+|..++
T Consensus 15 ~~i~~~~tv~dLL~~Lgi~~~~va 38 (67)
T PRK06437 15 IEIDHELTVNDIIKDLGLDEEEYV 38 (67)
T ss_pred EEcCCCCcHHHHHHHcCCCCccEE
Confidence 33445689999998 4454443
No 14
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=43.44 E-value=27 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.0
Q ss_pred eeeEEEcCCCeeEEEeecccHHHHHhhC
Q 038803 10 ATVVIQHPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 10 a~v~I~hp~GkVe~~~~~vsA~eVM~~n 37 (83)
++++|..|+|++-.|.+| +.-+|+..|
T Consensus 42 v~lvv~sp~gk~~~f~s~-s~~~vl~ry 68 (77)
T cd00265 42 VALIIFSSSGKLYEFSSP-SMEKIIERY 68 (77)
T ss_pred eeEEEEcCCCceEEecCC-CHHHHHHHH
Confidence 456788999999888665 457777654
No 15
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=43.44 E-value=38 Score=25.06 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=45.2
Q ss_pred cCCCeeEEEeecccHHHHHhhCCCcEEEeeecCcC--cCCCCCcc---------eeeeEeeCCCccccCCcEEEE
Q 038803 16 HPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPT--LKSENGLP---------VKQLKLLRPDDTLLIGRVYRL 79 (83)
Q Consensus 16 hp~GkVe~~~~~vsA~eVM~~nPgH~Va~~~~~~~--~~~~~~~~---------~~riklL~Pd~~L~~G~~Y~L 79 (83)
-|+|-.-+|.-|.|+...|+.-.|.=+..+..--. ..+-+++. ++.-+-|.|+++..+.-+|+|
T Consensus 68 iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiGGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyL 142 (180)
T PF06483_consen 68 IPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIGGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYL 142 (180)
T ss_pred cCCccEEEEccccCCccccccccCCcEEEEecCCcccCCcccccCCceEEEEEECCCccccCCCCEEEEeEEEEe
Confidence 36899999999999999999999888765432111 11112321 244466888899888889987
No 16
>COG4996 Predicted phosphatase [General function prediction only]
Probab=39.92 E-value=40 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=32.1
Q ss_pred EEEcCCCeeEEEeecccHHHHHhhCCCcEEEeeecC
Q 038803 13 VIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATS 48 (83)
Q Consensus 13 ~I~hp~GkVe~~~~~vsA~eVM~~nPgH~Va~~~~~ 48 (83)
.|++..|++-+++.-+++--.=+.|.||.++++.|-
T Consensus 31 ~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN 66 (164)
T COG4996 31 TIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN 66 (164)
T ss_pred ceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC
Confidence 589999999999999999888899999999877553
No 17
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=39.81 E-value=42 Score=19.59 Aligned_cols=22 Identities=5% Similarity=-0.021 Sum_probs=18.4
Q ss_pred cCCCeeEEEeecccHHHHHhhC
Q 038803 16 HPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 16 hp~GkVe~~~~~vsA~eVM~~n 37 (83)
+-||+..++..+.|.+|+++..
T Consensus 2 ~iNg~~~~~~~~~tv~~ll~~l 23 (64)
T TIGR01683 2 TVNGEPVEVEDGLTLAALLESL 23 (64)
T ss_pred EECCeEEEcCCCCcHHHHHHHc
Confidence 3489999999999999998854
No 18
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=39.31 E-value=9.3 Score=27.99 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=12.3
Q ss_pred EeeCCCccccCCcEEEEe
Q 038803 63 KLLRPDDTLLIGRVYRLI 80 (83)
Q Consensus 63 klL~Pd~~L~~G~~Y~Li 80 (83)
-+++|||+|.-.++..+|
T Consensus 151 glmPpdd~Lk~wkvskIi 168 (171)
T PF06572_consen 151 GLMPPDDTLKNWKVSKII 168 (171)
T ss_dssp TS---HHHHTT-EEEEEE
T ss_pred CCCCChHHHhhceeeEEE
Confidence 469999999999999887
No 19
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=38.70 E-value=84 Score=23.49 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.7
Q ss_pred CCCcEEEeeecCc
Q 038803 37 NPGHYVALLATSP 49 (83)
Q Consensus 37 nPgH~Va~~~~~~ 49 (83)
+-|||+|.+....
T Consensus 181 ~sGHYva~vr~~~ 193 (241)
T cd02670 181 ETGHYVAFVRYGS 193 (241)
T ss_pred CCcCeEEEEECCc
Confidence 8999999987554
No 20
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=38.40 E-value=30 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.557 Sum_probs=20.7
Q ss_pred CeeEEEeecc---------cHHHHH-------hhCCCcEEEee
Q 038803 19 NKIERIYWSV---------SAIEIM-------NSNPGHYVALL 45 (83)
Q Consensus 19 GkVe~~~~~v---------sA~eVM-------~~nPgH~Va~~ 45 (83)
++....||.+ .+++|| ++||+|||-++
T Consensus 41 ~~~~~~YW~MWkLPMFg~tD~~~Vl~Ei~~CrkayP~~yIRl~ 83 (138)
T CHL00130 41 PHPRNSYWELWGLPLFDVKDPAAVMFEINECRKQKPNGYIKVN 83 (138)
T ss_pred CCcCccEEeeeCCccCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5566678875 788888 68999998654
No 21
>smart00432 MADS MADS domain.
Probab=37.91 E-value=29 Score=20.87 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=14.3
Q ss_pred ceeeEEEcCCCeeEEEeec
Q 038803 9 AATVVIQHPGNKIERIYWS 27 (83)
Q Consensus 9 ~a~v~I~hp~GkVe~~~~~ 27 (83)
.++++|..|+|++-.|.+|
T Consensus 41 ~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 41 EVALIVFSPTGKLYEFASP 59 (59)
T ss_pred eEEEEEECCCCCeeeccCC
Confidence 3567889999998776654
No 22
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=37.88 E-value=55 Score=19.14 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.0
Q ss_pred EEEcCCCeeEEEeecccHHHHHhhC
Q 038803 13 VIQHPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 13 ~I~hp~GkVe~~~~~vsA~eVM~~n 37 (83)
+|.-|+|++.+|..-.|+.|+-..-
T Consensus 2 ~v~lpdG~~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 2 RVYLPDGSIKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEETTSCEEEEETTBBHHHHHHHH
T ss_pred EEECCCCCeeeCCCCCCHHHHHHHH
Confidence 5677999999999999998887653
No 23
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=37.11 E-value=50 Score=20.19 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=17.6
Q ss_pred eeEEEcCCCe-eEEEeecccHHHHHh
Q 038803 11 TVVIQHPGNK-IERIYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~Gk-Ve~~~~~vsA~eVM~ 35 (83)
++.+.+.+|+ |.++.+-+++.|+.+
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp EEEECTTTSCEEEEEESS--HHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 4466777888 668999999988875
No 24
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=36.10 E-value=69 Score=19.15 Aligned_cols=20 Identities=10% Similarity=0.038 Sum_probs=16.3
Q ss_pred cCCCeeEEEeec-ccHHHHHh
Q 038803 16 HPGNKIERIYWS-VSAIEIMN 35 (83)
Q Consensus 16 hp~GkVe~~~~~-vsA~eVM~ 35 (83)
.-||+..++..+ .|.+|+++
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~ 24 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLT 24 (67)
T ss_pred EECCEEEEcCCCcccHHHHHH
Confidence 458998888877 68999887
No 25
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=35.91 E-value=15 Score=27.36 Aligned_cols=18 Identities=39% Similarity=0.480 Sum_probs=16.3
Q ss_pred EeeCCCccccCCcEEEEe
Q 038803 63 KLLRPDDTLLIGRVYRLI 80 (83)
Q Consensus 63 klL~Pd~~L~~G~~Y~Li 80 (83)
-+++|||+|+-++++.+|
T Consensus 171 glmPpdd~Lk~w~vskII 188 (191)
T PRK10718 171 GLMPSDDTLKNWKVSKII 188 (191)
T ss_pred CCCCcHHHHhhcEeeEEE
Confidence 478999999999999887
No 26
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=34.56 E-value=56 Score=20.40 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.3
Q ss_pred ceeeEEEcCCCeeEEEee
Q 038803 9 AATVVIQHPGNKIERIYW 26 (83)
Q Consensus 9 ~a~v~I~hp~GkVe~~~~ 26 (83)
++.+.|+..||||.+++.
T Consensus 47 v~~I~I~K~dgkVl~v~H 64 (66)
T PF15631_consen 47 VFYIEIRKKDGKVLNVTH 64 (66)
T ss_pred eEEEEEEccCCeEEEEEe
Confidence 456789999999999876
No 27
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=33.68 E-value=54 Score=19.23 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=11.6
Q ss_pred eeeEEEcCCCeeEEE
Q 038803 10 ATVVIQHPGNKIERI 24 (83)
Q Consensus 10 a~v~I~hp~GkVe~~ 24 (83)
++++|..|+|++..|
T Consensus 35 v~~iv~~~~g~~~~f 49 (51)
T PF00319_consen 35 VALIVFSPDGKLYTF 49 (51)
T ss_dssp EEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 456788999999765
No 28
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=33.23 E-value=61 Score=16.95 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=12.5
Q ss_pred eEEEcCCCeeEEEee
Q 038803 12 VVIQHPGNKIERIYW 26 (83)
Q Consensus 12 v~I~hp~GkVe~~~~ 26 (83)
+.+.+|+|++.+|.+
T Consensus 8 ~~~~~p~G~~~~~~Y 22 (42)
T TIGR01643 8 TGSTDADGTTTRYTY 22 (42)
T ss_pred EEEECCCCCEEEEEE
Confidence 457899999999977
No 29
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=30.65 E-value=50 Score=20.44 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=11.3
Q ss_pred eeEEEcCCCeeEEEe
Q 038803 11 TVVIQHPGNKIERIY 25 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~ 25 (83)
.|-+.-.+||||||.
T Consensus 37 ~VA~~ta~GkveeY~ 51 (59)
T PF05862_consen 37 IVAAVTANGKVEEYK 51 (59)
T ss_pred EEEEEecCCceeeee
Confidence 445667889999985
No 30
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=30.48 E-value=42 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=14.6
Q ss_pred hhhhhceeeEEEcCCCeeEEEeec
Q 038803 4 CQAAEAATVVIQHPGNKIERIYWS 27 (83)
Q Consensus 4 C~A~d~a~v~I~hp~GkVe~~~~~ 27 (83)
.+.++...++|.++||+|.++...
T Consensus 38 ~~~~~~~~a~v~~~dg~i~~~~~~ 61 (177)
T PF12969_consen 38 YEKLKIHKARVIRPDGKIDKLDKS 61 (177)
T ss_dssp TEEEEEEEEEEE-TTS-EEE--GG
T ss_pred CcEEEEEEEEEEcCCCeEEecChH
Confidence 344566677899999998887654
No 31
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=24.64 E-value=66 Score=17.16 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.3
Q ss_pred EEcCCCeeEEEeecc
Q 038803 14 IQHPGNKIERIYWSV 28 (83)
Q Consensus 14 I~hp~GkVe~~~~~v 28 (83)
|.||..+|..+-+|+
T Consensus 15 ilhp~nhv~liir~i 29 (29)
T PF06145_consen 15 ILHPFNHVNLIIRPI 29 (29)
T ss_pred ccCcccceeEEEecC
Confidence 679999998887764
No 32
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=24.28 E-value=66 Score=19.32 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=17.7
Q ss_pred ceeeEEEcCCCeeEEEeecccH
Q 038803 9 AATVVIQHPGNKIERIYWSVSA 30 (83)
Q Consensus 9 ~a~v~I~hp~GkVe~~~~~vsA 30 (83)
.+.|+|-+|||..++..-++.+
T Consensus 42 ~~~V~VtypDgS~~~V~v~V~V 63 (65)
T PF08428_consen 42 TGKVKVTYPDGSTDEVPVPVTV 63 (65)
T ss_pred EEEEEEEcCCCCEEEEEeEEEE
Confidence 3568999999999998777654
No 33
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=24.00 E-value=79 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=12.8
Q ss_pred hhceeeEEEcCCCeeEEEe
Q 038803 7 AEAATVVIQHPGNKIERIY 25 (83)
Q Consensus 7 ~d~a~v~I~hp~GkVe~~~ 25 (83)
+|.-.+-|++|||+|++..
T Consensus 164 Ad~s~v~VI~pdG~v~~~~ 182 (229)
T PF06251_consen 164 ADKSRVYVIQPDGSVQKVP 182 (229)
T ss_dssp B-SSEEEEE-TTS-EEEEE
T ss_pred CCcccEEEEeCCCcEEEcc
Confidence 4666778999999999763
No 34
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=23.81 E-value=1.3e+02 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=17.9
Q ss_pred eeEEEcCCCeeEEEeec--ccHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWS--VSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~--vsA~eVM~ 35 (83)
+.++..|+|||-||... -+..|+|.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~ 28 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRT 28 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHH
Confidence 35788999999999864 34455554
No 35
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=23.52 E-value=36 Score=23.92 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=11.1
Q ss_pred HHHHhhCCCcEE
Q 038803 31 IEIMNSNPGHYV 42 (83)
Q Consensus 31 ~eVM~~nPgH~V 42 (83)
.|||+.+|.|.|
T Consensus 115 EEi~a~~P~hwv 126 (131)
T PF11357_consen 115 EEIQAYDPEHWV 126 (131)
T ss_pred HHHHHhCCcchh
Confidence 699999999987
No 36
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=22.98 E-value=67 Score=29.23 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=19.4
Q ss_pred eeeEEEcCCCeeEEEe-------ecccHHHHHh
Q 038803 10 ATVVIQHPGNKIERIY-------WSVSAIEIMN 35 (83)
Q Consensus 10 a~v~I~hp~GkVe~~~-------~~vsA~eVM~ 35 (83)
-+|.|+||+|++|+|. .|..+-|.|.
T Consensus 332 G~VEv~~PdGk~e~l~mGnSFG~~PT~dkqym~ 364 (1283)
T KOG3542|consen 332 GCVEVVKPDGKREELKMGNSFGAEPTPDKQYMI 364 (1283)
T ss_pred ceEEEecCCCceEEeecccccCCCCCcchhhhh
Confidence 3678999999999996 3555666654
No 37
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=22.70 E-value=1.7e+02 Score=16.82 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=19.1
Q ss_pred EcCCCeeEEEeecccHHHHHhh
Q 038803 15 QHPGNKIERIYWSVSAIEIMNS 36 (83)
Q Consensus 15 ~hp~GkVe~~~~~vsA~eVM~~ 36 (83)
+.-||+..++..+.|.++++.+
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~ 24 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAR 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHh
Confidence 3568999999999999999985
No 38
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=22.00 E-value=82 Score=23.31 Aligned_cols=17 Identities=6% Similarity=0.575 Sum_probs=14.1
Q ss_pred cHHHHH-------hhCCCcEEEee
Q 038803 29 SAIEIM-------NSNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM-------~~nPgH~Va~~ 45 (83)
.+++|| ++||+|||.++
T Consensus 134 D~~~Vl~Ei~eC~kayP~~yIRii 157 (176)
T PLN02289 134 DSAQVLKELEEAKKAYPNAFIRII 157 (176)
T ss_pred CHHHHHHHHHHHHHHCCcceEEEE
Confidence 678888 67999999764
No 39
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=21.14 E-value=1.2e+02 Score=16.52 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEcCCCeeEEEeecccHHHHHhh
Q 038803 14 IQHPGNKIERIYWSVSAIEIMNS 36 (83)
Q Consensus 14 I~hp~GkVe~~~~~vsA~eVM~~ 36 (83)
+-.|||...++....+++++.+.
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~ 25 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYA 25 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHH
Confidence 56789999999999999998864
No 40
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=21.13 E-value=1.8e+02 Score=20.70 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=17.7
Q ss_pred eeEEEcCCCeeEEEeec-----ccHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWS-----VSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~-----vsA~eVM~ 35 (83)
++.|+.++|+|...+.. -++.|+|+
T Consensus 121 ~tfIID~~G~I~~~~~~~~~~~~~~~eil~ 150 (187)
T PRK10382 121 ATFVVDPQGIIQAIEVTAEGIGRDASDLLR 150 (187)
T ss_pred EEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence 45789999999888643 15666665
Done!