Query 038803
Match_columns 83
No_of_seqs 89 out of 109
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmm_A Guanosine-3',5'-BIS(dip 69.1 3.6 0.00012 23.2 2.5 26 12-37 3-28 (73)
2 1m2d_A [2Fe-2S] ferredoxin; th 66.7 4.5 0.00016 25.2 2.8 28 1-34 56-83 (110)
3 1egw_A MADS box transcription 53.0 14 0.00047 22.5 3.2 27 10-37 42-68 (77)
4 3p57_A Myocyte-specific enhanc 52.7 13 0.00046 23.4 3.2 28 9-37 41-68 (90)
5 1zzo_A RV1677; thioredoxin fol 51.6 20 0.00067 20.8 3.7 25 11-35 104-128 (136)
6 1lu4_A Soluble secreted antige 47.9 21 0.00071 20.8 3.4 25 11-35 102-129 (136)
7 1mnm_A Protein (MCM1 transcrip 46.6 8.9 0.00031 24.7 1.6 29 10-39 58-86 (100)
8 1rbl_M Ribulose 1,5 bisphospha 41.5 17 0.00058 23.7 2.4 32 14-45 41-89 (109)
9 1wwt_A Threonyl-tRNA synthetas 41.4 31 0.001 20.2 3.4 27 11-37 11-38 (88)
10 1svd_M Ribulose bisphosphate c 40.9 17 0.00058 23.7 2.3 17 29-45 68-91 (110)
11 2qzb_A Uncharacterized protein 39.7 6.9 0.00023 27.5 0.2 18 63-80 146-163 (166)
12 3zxw_B Ribulose bisphosphate c 39.7 44 0.0015 22.1 4.2 46 29-78 65-117 (118)
13 3qx1_A FAS-associated factor 1 33.7 46 0.0016 19.5 3.3 29 6-34 4-34 (84)
14 3me7_A Putative uncharacterize 32.6 59 0.002 20.6 3.9 25 11-35 129-155 (170)
15 4f0h_B Ribulose bisphosphate c 31.7 29 0.00098 23.6 2.3 27 19-45 41-83 (138)
16 4eo3_A Bacterioferritin comigr 31.6 45 0.0015 24.3 3.5 24 12-35 105-132 (322)
17 1wdd_S Ribulose bisphosphate c 31.5 30 0.001 23.2 2.4 17 29-45 78-101 (128)
18 1bwv_S Rubisco, protein (ribul 31.2 30 0.001 23.5 2.4 27 19-45 41-83 (138)
19 1bxn_I Rubisco, protein (ribul 30.5 31 0.001 23.5 2.3 27 19-45 41-83 (139)
20 2dzk_A UBX domain-containing p 30.2 49 0.0017 20.7 3.1 26 8-33 12-39 (109)
21 4evm_A Thioredoxin family prot 29.5 73 0.0025 18.0 3.7 25 11-35 107-132 (138)
22 3hxs_A Thioredoxin, TRXP; elec 29.0 59 0.002 19.3 3.3 25 11-35 108-132 (141)
23 3erw_A Sporulation thiol-disul 28.3 75 0.0026 18.4 3.6 25 11-35 117-142 (145)
24 2cr5_A Reproduction 8; UBX dom 28.0 60 0.0021 20.1 3.3 26 8-33 22-49 (109)
25 1ryj_A Unknown; beta/alpha pro 27.6 27 0.00094 19.9 1.5 16 22-37 18-33 (70)
26 4h87_A Kanadaptin; FHA domain 25.8 84 0.0029 20.0 3.8 17 63-79 109-128 (130)
27 1wj4_A KIAA0794 protein; UBX d 24.6 75 0.0026 20.3 3.4 27 7-33 41-69 (124)
28 4hde_A SCO1/SENC family lipopr 24.0 1E+02 0.0035 19.6 3.9 17 11-27 136-152 (170)
29 1hbx_A SRF, serum response fac 23.9 29 0.00098 21.9 1.1 26 10-36 52-77 (92)
30 2l5l_A Thioredoxin; structural 23.1 87 0.003 18.7 3.3 25 11-35 95-119 (136)
31 1gk8_I Ribulose bisphosphate c 22.7 53 0.0018 22.4 2.4 17 29-45 85-108 (140)
32 1wln_A Afadin; beta sandwich, 21.6 58 0.002 20.2 2.3 20 56-75 86-105 (120)
33 3or5_A Thiol:disulfide interch 21.0 1.1E+02 0.0036 18.3 3.4 25 11-35 119-144 (165)
34 1xzo_A BSSCO, hypothetical pro 21.0 1.4E+02 0.0047 18.1 4.0 25 11-35 138-165 (174)
35 4egx_A Kinesin-like protein KI 20.6 59 0.002 22.2 2.3 22 55-76 145-166 (184)
No 1
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=69.13 E-value=3.6 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.2
Q ss_pred eEEEcCCCeeEEEeecccHHHHHhhC
Q 038803 12 VVIQHPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 12 v~I~hp~GkVe~~~~~vsA~eVM~~n 37 (83)
+.|.-|||++.++....++.|+.++.
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 46777999999999999999998764
No 2
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=66.67 E-value=4.5 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.3
Q ss_pred CcchhhhhceeeEEEcCCCeeEEEeecccHHHHH
Q 038803 1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIM 34 (83)
Q Consensus 1 MGNC~A~d~a~v~I~hp~GkVe~~~~~vsA~eVM 34 (83)
||+|... -++++.||| .+|..++..+|-
T Consensus 56 lG~C~~g---P~v~V~P~~---~~y~~vt~e~v~ 83 (110)
T 1m2d_A 56 MNASMMG---PVVVVYPDG---VWYGQVKPEDVD 83 (110)
T ss_dssp CSCGGGC---SCEEEETTT---EEECSCCGGGHH
T ss_pred CCccCCC---CEEEEEeCC---EEEecCCHHHHH
Confidence 7889653 334555998 578777775543
No 3
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=53.03 E-value=14 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=20.5
Q ss_pred eeeEEEcCCCeeEEEeecccHHHHHhhC
Q 038803 10 ATVVIQHPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 10 a~v~I~hp~GkVe~~~~~vsA~eVM~~n 37 (83)
+++.|..|+|+.-+|.. -+..+++..|
T Consensus 42 V~livfs~~gk~~~~~s-~~~~~il~ry 68 (77)
T 1egw_A 42 IALIIFNSSNKLFQYAS-TDMDKVLLKY 68 (77)
T ss_dssp EEEEEECTTCCEEEEES-SCHHHHHHHH
T ss_pred EEEEEECCCCCEeeCCC-CCHHHHHHHH
Confidence 44677789999999864 4788888765
No 4
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=52.72 E-value=13 Score=23.40 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=21.6
Q ss_pred ceeeEEEcCCCeeEEEeecccHHHHHhhC
Q 038803 9 AATVVIQHPGNKIERIYWSVSAIEIMNSN 37 (83)
Q Consensus 9 ~a~v~I~hp~GkVe~~~~~vsA~eVM~~n 37 (83)
.+++.|..|+|++-+|.. .+..+|+..|
T Consensus 41 ~Valiifs~~gk~~~f~s-~~~~~il~rY 68 (90)
T 3p57_A 41 EIALIIFNSSNKLFQYAS-TDMDKVLLKY 68 (90)
T ss_dssp EEEEEEECTTCCEEEEES-SCHHHHHHHH
T ss_pred ceEEEEECCCCCEEEeCC-CCHHHHHHHH
Confidence 345677889999988754 5888888876
No 5
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=51.63 E-value=20 Score=20.75 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=19.0
Q ss_pred eeEEEcCCCeeEEEeecccHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~vsA~eVM~ 35 (83)
++.|+.++|++.++....+..++..
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~ 128 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTR 128 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHH
T ss_pred eEEEECCCCCEEEEecCCCHHHHHH
Confidence 5578899999987777777766543
No 6
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=47.87 E-value=21 Score=20.80 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=18.7
Q ss_pred eeEEEcCCCeeEEEe---ecccHHHHHh
Q 038803 11 TVVIQHPGNKIERIY---WSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~---~~vsA~eVM~ 35 (83)
++.|+.++|+|.++. ...+..++..
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~ 129 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSG 129 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHH
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHH
Confidence 457888999999666 6677777654
No 7
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=46.64 E-value=8.9 Score=24.75 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=22.1
Q ss_pred eeeEEEcCCCeeEEEeecccHHHHHhhCCC
Q 038803 10 ATVVIQHPGNKIERIYWSVSAIEIMNSNPG 39 (83)
Q Consensus 10 a~v~I~hp~GkVe~~~~~vsA~eVM~~nPg 39 (83)
+++.|..|+|++-+|..| +..+++..+.|
T Consensus 58 Valivfs~~gk~~~f~sp-s~~~il~r~~G 86 (100)
T 1mnm_A 58 VLLLVVSETGLVYTFSTP-KFEPIVTQQEG 86 (100)
T ss_dssp EEEEEECTTCCEEEEECT-TTTHHHHSHHH
T ss_pred EEEEEecCCCCcceecCC-CHHHHHHHhhC
Confidence 456788999999998877 77788765544
No 8
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=41.50 E-value=17 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.508 Sum_probs=22.4
Q ss_pred EEcC-CCeeEEEeecc---------cHHHHHh-------hCCCcEEEee
Q 038803 14 IQHP-GNKIERIYWSV---------SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 14 I~hp-~GkVe~~~~~v---------sA~eVM~-------~nPgH~Va~~ 45 (83)
|.|- +++..--||.. .+++||+ +||++||.++
T Consensus 41 lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRli 89 (109)
T 1rbl_M 41 IEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp EEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEeccCccccccEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4443 35555667774 6788875 7999999875
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=41.40 E-value=31 Score=20.17 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=22.8
Q ss_pred eeEEEcCCCeeEEEee-cccHHHHHhhC
Q 038803 11 TVVIQHPGNKIERIYW-SVSAIEIMNSN 37 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~-~vsA~eVM~~n 37 (83)
.+.|.-|||++.+|.. ..++.|+.+..
T Consensus 11 ~i~I~lpdG~~~~~~~~~~T~~dia~~i 38 (88)
T 1wwt_A 11 PIKVTLPDGKQVDAESWKTTPYQIACGI 38 (88)
T ss_dssp EEEEECTTSCEEEEETTTCCHHHHHHHS
T ss_pred CEEEEECCCCEEEcccCCCCHHHHHHHh
Confidence 4568889999999985 99999998775
No 10
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=40.86 E-value=17 Score=23.74 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.9
Q ss_pred cHHHHHh-------hCCCcEEEee
Q 038803 29 SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM~-------~nPgH~Va~~ 45 (83)
.+++||+ +||++||.++
T Consensus 68 d~~~Vl~El~~C~k~~p~~yVRli 91 (110)
T 1svd_M 68 NVDNVLAEIEACRSAYPTHQVKLV 91 (110)
T ss_dssp CHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5788875 7999999875
No 11
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=39.68 E-value=6.9 Score=27.53 Aligned_cols=18 Identities=39% Similarity=0.480 Sum_probs=16.4
Q ss_pred EeeCCCccccCCcEEEEe
Q 038803 63 KLLRPDDTLLIGRVYRLI 80 (83)
Q Consensus 63 klL~Pd~~L~~G~~Y~Li 80 (83)
-+++|||+|+-.++..+|
T Consensus 146 glmPpdd~Lk~w~vskII 163 (166)
T 2qzb_A 146 GLMPSDDTLKNWKVSKII 163 (166)
T ss_dssp TSCCCHHHHTTCEEEEEE
T ss_pred CCCCChHHHhhcEeeEEE
Confidence 579999999999999887
No 12
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=39.68 E-value=44 Score=22.06 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=19.1
Q ss_pred cHHHHH-------hhCCCcEEEeeecCcCcCCCCCcceeeeEeeCCCccccCCcEEE
Q 038803 29 SAIEIM-------NSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYR 78 (83)
Q Consensus 29 sA~eVM-------~~nPgH~Va~~~~~~~~~~~~~~~~~riklL~Pd~~L~~G~~Y~ 78 (83)
.+++|| ++||||||.++---+. ...+.--+-+=||++.=-.+..||
T Consensus 65 d~~~Vl~Ele~C~k~~p~~yVRliGfD~~----~q~q~~sfIv~RP~~~~pg~~~~r 117 (118)
T 3zxw_B 65 NAQDVLNEVQQCRSEYPNCFIRVVAFDNI----KQCQVMSFIVYKPNQANSGYSGYR 117 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEETT----TTEEEEEEEEECC-----------
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEEEeCC----cCEEEEEEEEECCCCCCCCCCccc
Confidence 456666 5699999987631111 111122344557776544444443
No 13
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=33.65 E-value=46 Score=19.47 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=21.8
Q ss_pred hhhceeeEEEcCCCe--eEEEeecccHHHHH
Q 038803 6 AAEAATVVIQHPGNK--IERIYWSVSAIEIM 34 (83)
Q Consensus 6 A~d~a~v~I~hp~Gk--Ve~~~~~vsA~eVM 34 (83)
+.+..++.|..|||+ +.+|...-+.++|-
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~ 34 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVF 34 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHH
Confidence 345678899999996 67788777776653
No 14
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=32.59 E-value=59 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=17.8
Q ss_pred eeEEEcCCCeeEEEeecc--cHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWSV--SAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~v--sA~eVM~ 35 (83)
++.|+.++|+|..++... +..|+.+
T Consensus 129 ~~~lID~~G~i~~~~~g~~~~~~~i~~ 155 (170)
T 3me7_A 129 VVVVLSPELQIKDYIYGVNYNYLEFVN 155 (170)
T ss_dssp EEEEECTTSBEEEEEESSSCCHHHHHH
T ss_pred eEEEECCCCeEEEEEeCCCCCHHHHHH
Confidence 467999999999876554 4455544
No 15
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=31.66 E-value=29 Score=23.64 Aligned_cols=27 Identities=7% Similarity=0.423 Sum_probs=19.2
Q ss_pred CeeEEEeecc---------cHHHHHh-------hCCCcEEEee
Q 038803 19 NKIERIYWSV---------SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 19 GkVe~~~~~v---------sA~eVM~-------~nPgH~Va~~ 45 (83)
++...-||.. .+++||. +||+|||-++
T Consensus 41 ~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 4f0h_B 41 IHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVV 83 (138)
T ss_dssp CCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4444557775 5777775 6999999775
No 16
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=31.62 E-value=45 Score=24.27 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=19.9
Q ss_pred eEEEcCCCeeEEEeecccH----HHHHh
Q 038803 12 VVIQHPGNKIERIYWSVSA----IEIMN 35 (83)
Q Consensus 12 v~I~hp~GkVe~~~~~vsA----~eVM~ 35 (83)
+-|+.++|+|...+..+++ .||++
T Consensus 105 tfiId~~G~i~~~~~~v~~~~h~~~~l~ 132 (322)
T 4eo3_A 105 TFLIDRWGFVRKEWRRVKVEGHVQEVKE 132 (322)
T ss_dssp EEEECTTSBEEEEEESCCSTTHHHHHHH
T ss_pred EEEECCCCEEEEEEeCCCccccHHHHHH
Confidence 4689999999999999985 66654
No 17
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=31.48 E-value=30 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=13.5
Q ss_pred cHHHHHh-------hCCCcEEEee
Q 038803 29 SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM~-------~nPgH~Va~~ 45 (83)
.++|||+ +||++||.++
T Consensus 78 d~~~Vl~El~~C~k~~P~~YVRli 101 (128)
T 1wdd_S 78 DATQVLKELEEAKKAYPDAFVRII 101 (128)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4777774 7999999875
No 18
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=31.16 E-value=30 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.487 Sum_probs=19.4
Q ss_pred CeeEEEeecc---------cHHHHHh-------hCCCcEEEee
Q 038803 19 NKIERIYWSV---------SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 19 GkVe~~~~~v---------sA~eVM~-------~nPgH~Va~~ 45 (83)
++..--||.+ .+++||+ +||+|||-++
T Consensus 41 ~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 1bwv_S 41 IHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVV 83 (138)
T ss_dssp CCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCccCEEeccCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4444557764 5788875 7999999775
No 19
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=30.47 E-value=31 Score=23.49 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=19.5
Q ss_pred CeeEEEeecc---------cHHHHHh-------hCCCcEEEee
Q 038803 19 NKIERIYWSV---------SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 19 GkVe~~~~~v---------sA~eVM~-------~nPgH~Va~~ 45 (83)
++..--||.+ .+++||+ +||+|||-++
T Consensus 41 ~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRli 83 (139)
T 1bxn_I 41 PHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVT 83 (139)
T ss_dssp CCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CccccCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4444557764 5788875 7999999876
No 20
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=30.20 E-value=49 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=19.9
Q ss_pred hceeeEEEcCCCe--eEEEeecccHHHH
Q 038803 8 EAATVVIQHPGNK--IERIYWSVSAIEI 33 (83)
Q Consensus 8 d~a~v~I~hp~Gk--Ve~~~~~vsA~eV 33 (83)
+..++.|..|||+ +.+|...-+.++|
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 4678899999998 6677766666665
No 21
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=29.46 E-value=73 Score=17.99 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=16.6
Q ss_pred eeEEEcCCCeeEE-EeecccHHHHHh
Q 038803 11 TVVIQHPGNKIER-IYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~-~~~~vsA~eVM~ 35 (83)
++.|+.++|+|.. +....+..++..
T Consensus 107 ~~~lid~~G~i~~~~~g~~~~~~l~~ 132 (138)
T 4evm_A 107 TQAFIDKEGKLVKTHPGFMEKDAILQ 132 (138)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHH
T ss_pred eEEEECCCCcEEEeecCCCcHHHHHH
Confidence 4578889999864 445566665543
No 22
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=28.98 E-value=59 Score=19.32 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=19.7
Q ss_pred eeEEEcCCCeeEEEeecccHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~vsA~eVM~ 35 (83)
++.+.+++|++.++....+..++..
T Consensus 108 t~~~~~~~g~~~~~~G~~~~~~l~~ 132 (141)
T 3hxs_A 108 TIWFVPMKGEPQVNMGALSKEQLKG 132 (141)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHH
T ss_pred EEEEEeCCCCEEEEeCCCCHHHHHH
Confidence 4567789999999988888877643
No 23
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=28.29 E-value=75 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=17.5
Q ss_pred eeEEEcCCCeeEE-EeecccHHHHHh
Q 038803 11 TVVIQHPGNKIER-IYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~-~~~~vsA~eVM~ 35 (83)
++.|+.++|+|.. +....+..++..
T Consensus 117 ~~~lid~~G~i~~~~~g~~~~~~l~~ 142 (145)
T 3erw_A 117 TSFLLNEKGEIEKTKIGPMTAEQLKE 142 (145)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHH
T ss_pred eEEEEcCCCcEEEEEcCCcCHHHHHH
Confidence 4578889999854 556667766653
No 24
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=28.03 E-value=60 Score=20.11 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.9
Q ss_pred hceeeEEEcCCCe--eEEEeecccHHHH
Q 038803 8 EAATVVIQHPGNK--IERIYWSVSAIEI 33 (83)
Q Consensus 8 d~a~v~I~hp~Gk--Ve~~~~~vsA~eV 33 (83)
+..++.|..|||+ +.+|...-+.++|
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v 49 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVL 49 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 4678889999995 6788888787766
No 25
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=27.56 E-value=27 Score=19.94 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=12.7
Q ss_pred EEEeecccHHHHHhhC
Q 038803 22 ERIYWSVSAIEIMNSN 37 (83)
Q Consensus 22 e~~~~~vsA~eVM~~n 37 (83)
.++....|++++++..
T Consensus 18 ~~~~~~~tv~~Ll~~l 33 (70)
T 1ryj_A 18 LESGAPRRIKDVLGEL 33 (70)
T ss_dssp EEESSCCBHHHHHHHT
T ss_pred EECCCCCcHHHHHHHh
Confidence 5666778999999884
No 26
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=25.79 E-value=84 Score=20.04 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=13.9
Q ss_pred EeeCCCccccCCc---EEEE
Q 038803 63 KLLRPDDTLLIGR---VYRL 79 (83)
Q Consensus 63 klL~Pd~~L~~G~---~Y~L 79 (83)
..|+++|.+.+|. .|.|
T Consensus 109 ~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 109 CRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp EECCTTCEEEETTCSEEEEE
T ss_pred eECCCCCEEEECCceEEEEE
Confidence 4699999999996 5665
No 27
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=24.65 E-value=75 Score=20.34 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.6
Q ss_pred hhceeeEEEcCCCe--eEEEeecccHHHH
Q 038803 7 AEAATVVIQHPGNK--IERIYWSVSAIEI 33 (83)
Q Consensus 7 ~d~a~v~I~hp~Gk--Ve~~~~~vsA~eV 33 (83)
.+..+++|..|||+ +.+|...-+.++|
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V 69 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLAL 69 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHH
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 35678899999996 6777777777665
No 28
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=24.04 E-value=1e+02 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=14.0
Q ss_pred eeEEEcCCCeeEEEeec
Q 038803 11 TVVIQHPGNKIERIYWS 27 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~ 27 (83)
++.|+.++|+|..+|..
T Consensus 136 ~~~liD~~G~i~~~~~g 152 (170)
T 4hde_A 136 SFYLIDQNGKVMKKYSG 152 (170)
T ss_dssp EEEEECTTSCEEEEEES
T ss_pred EEEEEcCCCeEEEEECC
Confidence 56789999999988753
No 29
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=23.87 E-value=29 Score=21.94 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=18.0
Q ss_pred eeeEEEcCCCeeEEEeecccHHHHHhh
Q 038803 10 ATVVIQHPGNKIERIYWSVSAIEIMNS 36 (83)
Q Consensus 10 a~v~I~hp~GkVe~~~~~vsA~eVM~~ 36 (83)
+++.|..|+|+.-+|..| +..+++..
T Consensus 52 V~livfs~~gk~~~f~s~-~~~~~i~~ 77 (92)
T 1hbx_A 52 VLLLVASETGHVYTFATR-KLQPMITS 77 (92)
T ss_dssp EEEEEECTTSCEEEEECG-GGGGGTSS
T ss_pred eEEEEECCCCCEEEecCC-CHHHHHhh
Confidence 456778899998888654 55555543
No 30
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=23.11 E-value=87 Score=18.72 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=18.7
Q ss_pred eeEEEcCCCeeEEEeecccHHHHHh
Q 038803 11 TVVIQHPGNKIERIYWSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~vsA~eVM~ 35 (83)
++.+...+|++.++....+..++.+
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~ 119 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKK 119 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHH
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHH
Confidence 4456668999988888888877653
No 31
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=22.68 E-value=53 Score=22.35 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.9
Q ss_pred cHHHHHh-------hCCCcEEEee
Q 038803 29 SAIEIMN-------SNPGHYVALL 45 (83)
Q Consensus 29 sA~eVM~-------~nPgH~Va~~ 45 (83)
.++|||+ +||++||.++
T Consensus 85 d~~qVl~El~~C~k~~P~~YVRli 108 (140)
T 1gk8_I 85 DPMQVLREIVACTKAFPDAYVRLV 108 (140)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5788875 7999999875
No 32
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=21.59 E-value=58 Score=20.18 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=15.9
Q ss_pred CcceeeeEeeCCCccccCCc
Q 038803 56 GLPVKQLKLLRPDDTLLIGR 75 (83)
Q Consensus 56 ~~~~~riklL~Pd~~L~~G~ 75 (83)
+.++++...|+++|.+.+|.
T Consensus 86 g~~i~~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 86 GQRISETTMLQSGMRLQFGT 105 (120)
T ss_dssp SCBCSSCEEECTTCEEEETT
T ss_pred CEEcCCCEECCCCCEEEECC
Confidence 33556667899999999998
No 33
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=21.02 E-value=1.1e+02 Score=18.34 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=17.0
Q ss_pred eeEEEcCCCeeEEEe-ecccHHHHHh
Q 038803 11 TVVIQHPGNKIERIY-WSVSAIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~-~~vsA~eVM~ 35 (83)
++.|+.++|+|...+ ...+..++.+
T Consensus 119 ~~~lid~~G~i~~~~~g~~~~~~l~~ 144 (165)
T 3or5_A 119 TSFVIDASGNVSGVIVGPRSKADFDR 144 (165)
T ss_dssp EEEEECTTSBEEEEECSCCCHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHH
Confidence 457889999996544 5666655543
No 34
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=21.00 E-value=1.4e+02 Score=18.12 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred eeEEEcCCCeeEEEeeccc---HHHHHh
Q 038803 11 TVVIQHPGNKIERIYWSVS---AIEIMN 35 (83)
Q Consensus 11 ~v~I~hp~GkVe~~~~~vs---A~eVM~ 35 (83)
+..|+.++|+|...+.... ..++++
T Consensus 138 ~~~lid~~G~i~~~~~g~~~~~~~~l~~ 165 (174)
T 1xzo_A 138 SFYLVGPDGKVLKDYNGVENTPYDDIIS 165 (174)
T ss_dssp EEEEECTTSEEEEEEESSSSCCHHHHHH
T ss_pred EEEEECCCCeEEEEEcCCCCCCHHHHHH
Confidence 4689999999988765432 455543
No 35
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=20.65 E-value=59 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=17.3
Q ss_pred CCcceeeeEeeCCCccccCCcE
Q 038803 55 NGLPVKQLKLLRPDDTLLIGRV 76 (83)
Q Consensus 55 ~~~~~~riklL~Pd~~L~~G~~ 76 (83)
+|.+++.-..|+.+|.+.+|+-
T Consensus 145 NG~~I~~~~~L~~GDrI~lG~~ 166 (184)
T 4egx_A 145 NGKKVTEPSILRSGNRIIMGKS 166 (184)
T ss_dssp TTEECCSCEECCTTCEEEETTT
T ss_pred cCEEccccEEcCCCCEEEECCC
Confidence 4556666678999999999953
Done!