BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038804
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A +L RD +G + Y VP+GRRDG S ASEA +PSP FNA QL SFA K L
Sbjct: 98 ADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTL 157
Query: 68 TQEDML----------------------------IQFQWKPMCAVDLKRKCPKGNNN-SN 98
T ++M+ I P A L+ CP + +
Sbjct: 158 TADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTP 217
Query: 99 LVVPMNPASPSI-----KTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNKFV 153
+ V ++ +PS+ T + +T+ + + + + + L T W +KF
Sbjct: 218 ITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNL-TAWASKFA 276
Query: 154 AAMVRMGPIGVVTGQAGEIRANCRVINS 181
AMV+MG I V+TG GEIR NC V+NS
Sbjct: 277 QAMVKMGQIEVLTGTQGEIRTNCSVVNS 304
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 4 KGVAAGLLRMHFRDCFVR 21
G+A GL+RMHF DCFVR
Sbjct: 30 SGIAPGLIRMHFHDCFVR 47
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A +L + RD V GG ++V GRRD + S A ++LP+P FN L +F+ KG
Sbjct: 98 ADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGF 157
Query: 68 TQEDMLI---------------------QFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPA 106
T ++++ + P A L+ CP ++NL P +
Sbjct: 158 TTKELVTLSGAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNL-SPFDVT 216
Query: 107 SPSIKTTMSVTML-----IFYATEGXXXXXXXXXXXXXHRIELKTIWGNKFVAAMVRMGP 161
+P+ L + ++ + + T + F AM++MG
Sbjct: 217 TPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAAT-FNTDFGNAMIKMGN 275
Query: 162 IGVVTGQAGEIRANCRVIN 180
+ +TG +G+IR NCR N
Sbjct: 276 LSPLTGTSGQIRTNCRKTN 294
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 2 KDKGVAAGLLRMHFRDCFVR 21
K+ + A LLR+HF DCFV+
Sbjct: 28 KEARMGASLLRLHFHDCFVQ 47
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQW-----KPMCAVDLKRK------------------------CPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 217
Query: 99 LVVPMNPASPSI-KTTMSVTM-----LIFYATEGXXXXXXXXXXXXXHRIELKT-IWGNK 151
+V M+ +P+I V + LI E T + N
Sbjct: 218 ALVDMDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 277
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 278 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFHDCFV 47
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 48/214 (22%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A +L + RD V SGG G+ V GR+DG + + A NLPSP + F A L
Sbjct: 95 ADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSA-NNLPSPFEPLDAIIAKFVAVNL 153
Query: 68 TQEDML----IQFQWKPMCAV------------------------DLKRKCPKGNNNSNL 99
D++ + CAV +L+ CP G NSN+
Sbjct: 154 NITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLG-GNSNI 212
Query: 100 VVPMNPASPSI------------KTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTI 147
P++ ++ K +S ++F + +++
Sbjct: 213 TAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRS----QSL 268
Query: 148 WGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
+ F AM+RMG I G +GE+R NCRVIN+
Sbjct: 269 FFRDFTCAMIRMGNIS--NGASGEVRTNCRVINN 300
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 6 VAAGLLRMHFRDCFV 20
+AA L+R+HF DCFV
Sbjct: 32 MAASLIRLHFHDCFV 46
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 307
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 28 SDPRIAASILRLHFHDCFV 46
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 307
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 28 SDPRIAASILRLHFHDCFV 46
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 307
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +L +HF DCFV
Sbjct: 28 SDPRIAASILSLHFEDCFV 46
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 217
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 218 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 277
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 278 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFEDCFV 47
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 217
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 218 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 277
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 278 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFHDCFV 47
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 75/210 (35%), Gaps = 37/210 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 28 SDPRIAASILRLHFHDCFV 46
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 307
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 28 SDPRIAASILRLHFHDCFV 46
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 75/210 (35%), Gaps = 37/210 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 98 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 157
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 158 NRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 216
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 217 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 276
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 277 FVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 28 SDPRIAASILRLHFHDCFV 46
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 74/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 217
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 218 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 277
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 278 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFHDCFV 47
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 74/211 (35%), Gaps = 37/211 (17%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKR------------------------KCPKGNNNSN 98
+ L+ K C + R CP N N +
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLS 217
Query: 99 LVVPMNPASPSIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNK------- 151
+V + +P+I L I L + N
Sbjct: 218 ALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA 277
Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
FV AM RMG I +TG G+IR NCRV+NS
Sbjct: 278 FVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFHDCFV 47
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 77/224 (34%), Gaps = 63/224 (28%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
A LL + + +GG + VP GRRD + A NLP+P F QL SF GL
Sbjct: 99 ADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGL 158
Query: 68 TQEDMLIQFQ-----WKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFY 122
+ L+ K C + R N SN +P P++ TT T+
Sbjct: 159 NRSSDLVALSGGHTFGKNQCRSIMDRLY----NFSNTGLP----DPTLNTTYLQTL---- 206
Query: 123 ATEGXXXXXXXXXXXXXHRIELKTIWGNKF------------------------------ 152
G + TI+ NK+
Sbjct: 207 --RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLV 264
Query: 153 --------------VAAMVRMGPIGVVTGQAGEIRANCRVINSK 182
V AM RMG I +TG G+IR NCRV+NS
Sbjct: 265 RSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D +AA +LR+HF DCFV
Sbjct: 29 SDPRIAASILRLHFHDCFV 47
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 20 VRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDML 73
V GG G+ VP GRRD + + A NLP+P FN QL SFA +GL D++
Sbjct: 110 VLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLV 163
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 145 KTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVIN 180
T + N F +M++MG IGV+TG GEIR C +N
Sbjct: 269 NTFFSN-FRVSMIKMGNIGVLTGDEGEIRLQCNFVN 303
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1 MKDKGVAAGLLRMHFRDCFVR 21
D + A L+R+HF DCFV+
Sbjct: 27 FTDPRIGASLMRLHFHDCFVQ 47
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 33/192 (17%)
Query: 22 SGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDM--------- 72
SGG + V GRRD + + A +++PSP +T F+A GL D+
Sbjct: 114 SGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTF 173
Query: 73 -----------LIQFQWK--------PMCAVDLKRKCPK-----GNNNSNLVVPMNPASP 108
L F K L+ CP+ G+ N +L P +
Sbjct: 174 GRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNN 233
Query: 109 SIKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNKFVAAMVRMGPIGVVTGQ 168
S L+ E +T++ F +M+ MG I +TG
Sbjct: 234 YFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGS 293
Query: 169 AGEIRANCRVIN 180
+GEIR +C+ N
Sbjct: 294 SGEIRLDCKKTN 305
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 2 KDKGVAAGLLRMHFRDCFV 20
D + A L+R+HF DCFV
Sbjct: 30 SDSRIGASLIRLHFHDCFV 48
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 30/201 (14%)
Query: 8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRA-SKASEATTNLPSPAFNAKQLTQSFAAKG 66
+ +L + RD V SGG Y VP GRRD R+ + + ++LP P+ N + L G
Sbjct: 107 SDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLG 166
Query: 67 LTQEDMLI-------------QFQWK----------PMCAVDLKRKCPKGNNNSNLVVPM 103
L D++ F+ + P LKR CP + V+ +
Sbjct: 167 LDATDLVTISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDV 226
Query: 104 NPASPSIKTTMSVTMLI----FYATEGXXXXXXXXXXXXXHRIELKTIWGNKFVAAMVRM 159
+P++ L+ + ++ + + + +F ++ +M
Sbjct: 227 R--TPNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKM 284
Query: 160 GPIGVVTGQAGEIRANCRVIN 180
G + V T GE+R NC V N
Sbjct: 285 GQMRVRTSDQGEVRRNCSVRN 305
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 2 KDKGVAAGLLRMHFRDCFVR 21
KD G+AAGLLR+HF DCFV+
Sbjct: 35 KDIGLAAGLLRLHFHDCFVQ 54
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 22 SGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDML----IQFQ 77
+GG + V GRRD + + A +++PSP + +T F+A GL D++
Sbjct: 113 AGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTF 172
Query: 78 WKPMCAV------------------------DLKRKCPKGNNNSNLVVPMNPASPS---- 109
+ C V L++ CP+ N +++ + ++ ++P
Sbjct: 173 GRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQ-NGSASTITNLDLSTPDAFDN 231
Query: 110 --IKTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNKFVAAMVRMGPIGVVTG 167
S L+ E +T++ F +M+ MG I +TG
Sbjct: 232 NYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTG 291
Query: 168 QAGEIRANCRVIN 180
GEIR +C+ +N
Sbjct: 292 SNGEIRLDCKKVN 304
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 2 KDKGVAAGLLRMHFRDCFVR 21
D + A L+R+HF DCFV
Sbjct: 29 SDTRIGASLIRLHFHDCFVN 48
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 13 MHFRDCFVRSGGLGYDV-PAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKG 66
M +R C + G+GY+V PA RR A T LP A+ ++F +G
Sbjct: 1 MAYRICLIEGDGIGYEVIPAARRVLEA-------TGLPLEFVEAEAGWETFERRG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,620,158
Number of Sequences: 62578
Number of extensions: 150704
Number of successful extensions: 266
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 58
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)