Query 038804
Match_columns 184
No_of_seqs 118 out of 1146
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-60 4.4E-65 411.6 13.1 174 1-180 50-324 (324)
2 cd00693 secretory_peroxidase H 100.0 3.3E-55 7.1E-60 377.2 13.7 173 1-179 27-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 1.4E-42 3.1E-47 296.7 13.1 161 2-178 26-258 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.2E-39 2.6E-44 275.0 11.2 151 3-166 26-252 (253)
5 cd00692 ligninase Ligninase an 100.0 9.3E-38 2E-42 271.2 11.5 141 23-181 121-288 (328)
6 PLN02364 L-ascorbate peroxidas 100.0 4.3E-37 9.2E-42 258.9 12.1 148 2-165 28-248 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 2.1E-34 4.5E-39 242.5 12.1 125 23-166 110-249 (251)
8 PF00141 peroxidase: Peroxidas 100.0 2.4E-35 5.2E-40 245.8 2.3 128 2-142 11-225 (230)
9 cd00314 plant_peroxidase_like 100.0 5.5E-31 1.2E-35 221.9 10.3 128 23-161 100-255 (255)
10 cd08201 plant_peroxidase_like_ 100.0 3E-30 6.5E-35 217.7 9.7 151 2-161 37-264 (264)
11 cd00649 catalase_peroxidase_1 100.0 4.3E-29 9.3E-34 221.0 12.1 148 23-171 148-402 (409)
12 TIGR00198 cat_per_HPI catalase 99.9 1.1E-25 2.5E-30 210.4 11.9 163 6-170 141-408 (716)
13 PRK15061 catalase/hydroperoxid 99.9 4.6E-24 1E-28 199.0 12.0 147 23-170 160-414 (726)
14 cd08200 catalase_peroxidase_2 99.7 8.5E-17 1.8E-21 137.8 8.0 140 14-163 99-296 (297)
15 PRK15061 catalase/hydroperoxid 99.4 3.1E-13 6.7E-18 126.9 9.1 130 23-163 544-721 (726)
16 TIGR00198 cat_per_HPI catalase 99.4 1.1E-12 2.3E-17 123.7 8.7 130 23-163 532-709 (716)
17 COG0376 KatG Catalase (peroxid 98.7 7E-08 1.5E-12 88.4 9.9 138 23-162 173-415 (730)
18 COG0376 KatG Catalase (peroxid 95.4 0.043 9.4E-07 51.2 6.5 139 13-163 527-725 (730)
19 PF11895 DUF3415: Domain of un 73.6 3.4 7.4E-05 29.2 2.5 29 147-179 2-30 (80)
20 KOG4027 Uncharacterized conser 45.2 14 0.00029 29.8 1.6 49 16-71 97-146 (187)
21 PF00633 HHH: Helix-hairpin-he 32.0 21 0.00046 20.3 0.6 20 68-87 9-28 (30)
22 PF06163 DUF977: Bacterial pro 28.5 92 0.002 23.9 3.7 40 127-180 63-103 (127)
23 PLN00017 photosystem I reactio 28.1 48 0.001 23.7 2.0 18 143-160 40-57 (90)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2e-60 Score=411.65 Aligned_cols=174 Identities=35% Similarity=0.575 Sum_probs=160.2
Q ss_pred CCCcCcchhhhhhhcccceecC----------------------------------------------------------
Q 038804 1 MKDKGVAAGLLRMHFRDCFVRS---------------------------------------------------------- 22 (184)
Q Consensus 1 ~~d~~~~a~llrl~fhDcfv~g---------------------------------------------------------- 22 (184)
++||+++|+|||||||||||+|
T Consensus 50 ~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~ 129 (324)
T PLN03030 50 QSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVV 129 (324)
T ss_pred hhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhcccc
Confidence 4799999999999999999999
Q ss_pred --CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc-------------------------
Q 038804 23 --GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ------------------------- 75 (184)
Q Consensus 23 --GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL------------------------- 75 (184)
|||.|+|++||||+++|.++++. +||+|+.++++|++.|++|||+.+|||+|
T Consensus 130 ~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~ 208 (324)
T PLN03030 130 LTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTG 208 (324)
T ss_pred ccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCC
Confidence 99999999999999999888775 89999999999999999999999999999
Q ss_pred ----CCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh----hhhHH---h
Q 038804 76 ----FQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT----QQHRI---E 143 (184)
Q Consensus 76 ----~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~----~~~V~---~ 143 (184)
|+|++.|+.+|++.||..++ .+..+++|+.||. |||+||++|+ +++ |+|+|||+|++ +++|+ .
T Consensus 209 ~~~Dp~~d~~~~~~L~~~Cp~~~~-~~~~~~lD~~Tp~~FDn~Yy~nll---~~r-GlL~SDq~L~~d~~T~~~V~~~A~ 283 (324)
T PLN03030 209 NGADPSIDASFVPQLQALCPQNGD-GSRRIALDTGSSNRFDASFFSNLK---NGR-GILESDQKLWTDASTRTFVQRFLG 283 (324)
T ss_pred CCCCCchhHHHHHHHhccCCCCCC-CCccccCCCCCCcccccHHHHHHH---hcC-CCcCCchHhhcCccHHHHHHHHhc
Confidence 35888999999999995332 2346789999999 9999999999 999 99999999997 78887 4
Q ss_pred h----HHHHHHHHHHHHHHhccCCCCCCCCCcccccccccc
Q 038804 144 L----KTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVIN 180 (184)
Q Consensus 144 d----~~~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~N 180 (184)
| ++.||++|++||+|||+|+|+||.+||||++|+.+|
T Consensus 284 ~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 284 VRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred ccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 4 469999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-55 Score=377.21 Aligned_cols=173 Identities=45% Similarity=0.791 Sum_probs=161.0
Q ss_pred CCCcCcchhhhhhhcccceecC----------------------------------------------------------
Q 038804 1 MKDKGVAAGLLRMHFRDCFVRS---------------------------------------------------------- 22 (184)
Q Consensus 1 ~~d~~~~a~llrl~fhDcfv~g---------------------------------------------------------- 22 (184)
++|+++||+||||+||||||+|
T Consensus 27 ~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~ 106 (298)
T cd00693 27 KADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARD 106 (298)
T ss_pred HhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhh
Confidence 3689999999999999999988
Q ss_pred -----CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc----------------------
Q 038804 23 -----GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ---------------------- 75 (184)
Q Consensus 23 -----GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL---------------------- 75 (184)
|||.|+|++||+|+++|.+.++ +.||+|+.++++|++.|+++||+.+|||+|
T Consensus 107 av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~ 185 (298)
T cd00693 107 AVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFS 185 (298)
T ss_pred ceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCC
Confidence 9999999999999998887766 789999999999999999999999999999
Q ss_pred ------CCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh----hhhHH--
Q 038804 76 ------FQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT----QQHRI-- 142 (184)
Q Consensus 76 ------~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~----~~~V~-- 142 (184)
|+|++.|+..|+..||.... .+..++||+.||. |||+||++|+ .++ |+|+|||+|+. +++|+
T Consensus 186 g~~~~dp~~~~~~~~~L~~~Cp~~~~-~~~~~~lD~~Tp~~FDn~Yy~~l~---~~~-glL~SD~~L~~d~~t~~~V~~~ 260 (298)
T cd00693 186 GTGDPDPTLDPAYAAQLRKKCPAGGD-DDTLVPLDPGTPNTFDNSYYKNLL---AGR-GLLTSDQALLSDPRTRAIVNRY 260 (298)
T ss_pred CCCCCCCCccHHHHHHhcCCCCCCCC-CCccccCCCCCCCccccHHHHHHH---hcc-cCccCCHHhccCccHHHHHHHH
Confidence 45888999999999996543 4567899999999 9999999999 999 99999999997 78887
Q ss_pred -hhHHHHHHHHHHHHHHhccCCCCCCCCCccccccccc
Q 038804 143 -ELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVI 179 (184)
Q Consensus 143 -~d~~~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~ 179 (184)
.||+.|+++|++||+|||+|+|+||.+||||++|+.+
T Consensus 261 A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 261 AANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 8999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.4e-42 Score=296.67 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=136.2
Q ss_pred CCcCcchhhhhhhcccce-------ecC----------------------------------------------------
Q 038804 2 KDKGVAAGLLRMHFRDCF-------VRS---------------------------------------------------- 22 (184)
Q Consensus 2 ~d~~~~a~llrl~fhDcf-------v~g---------------------------------------------------- 22 (184)
+||.++|.+|||+||||| ++|
T Consensus 26 ~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~iK~~~~~VScADilalAardAV~~ 105 (289)
T PLN02608 26 ASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPVKAKHPKITYADLYQLAGVVAVEV 105 (289)
T ss_pred HCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHh
Confidence 589999999999999999 887
Q ss_pred -CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCcccccccCCCCHHHHHHhhccCCCCCCCCCCcc
Q 038804 23 -GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVV 101 (184)
Q Consensus 23 -GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~~ 101 (184)
|||.|+|++||+|++++.+ +++||+|+.++++|++.|+++||+.+|||+|.+ +|-.. +..|...+ . ..
T Consensus 106 ~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG--AHTiG--~ahc~r~g--~--~g 174 (289)
T PLN02608 106 TGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG--GHTLG--RAHPERSG--F--DG 174 (289)
T ss_pred cCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc--ccccc--cccccCCC--C--CC
Confidence 9999999999999999863 478999999999999999999999999999943 11111 23454211 0 11
Q ss_pred CCCCCCCC-CchhhhHHHHHhcCC--Cccc--ccchHHHHh----hhhHH---hhHHHHHHHHHHHHHHhccCCCCCCCC
Q 038804 102 PMNPASPS-IKTTMSVTMLIFYAT--EGTL--LQTKLCLLT----QQHRI---ELKTIWGNKFVAAMVRMGPIGVVTGQA 169 (184)
Q Consensus 102 ~~D~~Tp~-FDn~Yy~~ll~~~~~--~~gl--L~SD~~L~~----~~~V~---~d~~~F~~~F~~am~Km~~igv~tg~~ 169 (184)
+++ .||. |||+||++|+ .+ + |+ |+||++|+. +.+|+ .||+.|+++|++||+|||+|+|+||.+
T Consensus 175 ~~~-~Tp~~FDN~Yy~~ll---~~~~~-gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~ 249 (289)
T PLN02608 175 PWT-KEPLKFDNSYFVELL---KGESE-GLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSS 249 (289)
T ss_pred CCC-CCCCccChHHHHHHH---cCCcC-CccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 234 6999 9999999999 88 7 77 799999997 78887 889999999999999999999999999
Q ss_pred Ccccccccc
Q 038804 170 GEIRANCRV 178 (184)
Q Consensus 170 GeiR~~C~~ 178 (184)
||+.+.-+.
T Consensus 250 Ge~~~~~~~ 258 (289)
T PLN02608 250 AFKKKSTST 258 (289)
T ss_pred CcccccCcc
Confidence 999886553
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.2e-39 Score=274.98 Aligned_cols=151 Identities=18% Similarity=0.247 Sum_probs=127.5
Q ss_pred CcCcchhhhhhhcccceec----C--------------------------------------------------------
Q 038804 3 DKGVAAGLLRMHFRDCFVR----S-------------------------------------------------------- 22 (184)
Q Consensus 3 d~~~~a~llrl~fhDcfv~----g-------------------------------------------------------- 22 (184)
||+++|+||||+|||||+. |
T Consensus 26 ~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~VScADilalAar~Av~~~ 105 (253)
T cd00691 26 DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYPDISYADLWQLAGVVAIEEM 105 (253)
T ss_pred cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 7999999999999999874 1
Q ss_pred CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCcccccccCCCCHHHHHHhhccCCCCCCCCCCccC
Q 038804 23 GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVP 102 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~~~ 102 (184)
|||.|+|++||||+.+|...+++++||.|+.++++|++.|+++||+.+|||+|.+ +|-.. +..|-..+ .. .+
T Consensus 106 GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG--aHTiG--~a~c~~~~--~~--g~ 177 (253)
T cd00691 106 GGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG--AHTLG--RCHKERSG--YD--GP 177 (253)
T ss_pred CCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc--cceee--cccccCCC--CC--CC
Confidence 9999999999999999988778889999999999999999999999999999943 11111 23453211 01 11
Q ss_pred CCCCCCC-CchhhhHHHHHhcCCCcc--------cccchHHHHh----hhhHH---hhHHHHHHHHHHHHHHhccCCCCC
Q 038804 103 MNPASPS-IKTTMSVTMLIFYATEGT--------LLQTKLCLLT----QQHRI---ELKTIWGNKFVAAMVRMGPIGVVT 166 (184)
Q Consensus 103 ~D~~Tp~-FDn~Yy~~ll~~~~~~~g--------lL~SD~~L~~----~~~V~---~d~~~F~~~F~~am~Km~~igv~t 166 (184)
+..||. |||+||++|+ .++ | +|+||++|+. +.+|+ .|++.|+++|++||+||++|+|..
T Consensus 178 -~~~tp~~FDn~Yy~~ll---~~~-g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 178 -WTKNPLKFDNSYFKELL---EED-WKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred -CCCCCCcccHHHHHHHh---cCC-CccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 236999 9999999999 998 8 9999999997 78888 789999999999999999999863
No 5
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9.3e-38 Score=271.21 Aligned_cols=141 Identities=17% Similarity=0.280 Sum_probs=114.3
Q ss_pred CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCcccccccCCCCHHHHHHhhccCCCCCCCCCCccC
Q 038804 23 GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVP 102 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~~~ 102 (184)
|||.|+|++||+|++++.+ +++||+|+.++++|++.|+++||+.+|||+|.+ +|....-....|.- ...+
T Consensus 121 GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsG--AHTiG~a~~~Dps~-----~g~p 190 (328)
T cd00692 121 GAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFSPDELVALLA--AHSVAAQDFVDPSI-----AGTP 190 (328)
T ss_pred CCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcc--cccccccCCCCCCC-----CCCC
Confidence 9999999999999999864 468999999999999999999999999999943 22222112223321 1367
Q ss_pred CCCCCCC-CchhhhHHHHHhcCCCcc-------------------cccchHHHHh----hhhHH---hhHHHHHHHHHHH
Q 038804 103 MNPASPS-IKTTMSVTMLIFYATEGT-------------------LLQTKLCLLT----QQHRI---ELKTIWGNKFVAA 155 (184)
Q Consensus 103 ~D~~Tp~-FDn~Yy~~ll~~~~~~~g-------------------lL~SD~~L~~----~~~V~---~d~~~F~~~F~~a 155 (184)
+| .||. |||+||++++. .++ + +|+||++|+. +.+|+ +||++|+++|++|
T Consensus 191 ~D-~TP~~FDn~Yf~~ll~--~~~-~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~A 266 (328)
T cd00692 191 FD-STPGVFDTQFFIETLL--KGT-AFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAA 266 (328)
T ss_pred CC-CCcchhcHHHHHHHHH--cCC-CCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHH
Confidence 99 5999 99999999871 333 3 4999999997 67887 8999999999999
Q ss_pred HHHhccCCCCCCCCCccccccccccC
Q 038804 156 MVRMGPIGVVTGQAGEIRANCRVINS 181 (184)
Q Consensus 156 m~Km~~igv~tg~~GeiR~~C~~~N~ 181 (184)
|+||++|||. .....+|+.+++
T Consensus 267 m~KLs~lgv~----~~~l~dcs~v~p 288 (328)
T cd00692 267 MLKLSLLGQD----NISLTDCSDVIP 288 (328)
T ss_pred HHHHHcCCCC----cchhccCcccCC
Confidence 9999999986 337779999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4.3e-37 Score=258.95 Aligned_cols=148 Identities=20% Similarity=0.317 Sum_probs=123.0
Q ss_pred CCcCcchhhhhhhcc-----cceec--C----------------------------------------------------
Q 038804 2 KDKGVAAGLLRMHFR-----DCFVR--S---------------------------------------------------- 22 (184)
Q Consensus 2 ~d~~~~a~llrl~fh-----Dcfv~--g---------------------------------------------------- 22 (184)
.||++||.+|||+|| |||++ |
T Consensus 28 ~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VScADilalAardAV~~ 107 (250)
T PLN02364 28 AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEV 107 (250)
T ss_pred hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHh
Confidence 479999999999999 99998 5
Q ss_pred -CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhc-CCCcccccccCCCCHHHHHHhhccCCCCCCCCCCc
Q 038804 23 -GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAK-GLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLV 100 (184)
Q Consensus 23 -GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~k-Gl~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~ 100 (184)
|||.|+|++||||++++.+ +++||.|+.++++|++.|+++ |||.+|||+|.+ +|... +..|...+ ..
T Consensus 108 ~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsG--aHTiG--~~hc~r~~--~~-- 176 (250)
T PLN02364 108 TGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSG--AHTLG--RCHKDRSG--FE-- 176 (250)
T ss_pred cCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeec--ceeec--cccCCCCC--CC--
Confidence 9999999999999999864 468999999999999999974 999999999943 11111 23453211 11
Q ss_pred cCCCCCCCC-CchhhhHHHHHhcCC--Cccccc--chHHHHh----hhhHH---hhHHHHHHHHHHHHHHhccCCCC
Q 038804 101 VPMNPASPS-IKTTMSVTMLIFYAT--EGTLLQ--TKLCLLT----QQHRI---ELKTIWGNKFVAAMVRMGPIGVV 165 (184)
Q Consensus 101 ~~~D~~Tp~-FDn~Yy~~ll~~~~~--~~glL~--SD~~L~~----~~~V~---~d~~~F~~~F~~am~Km~~igv~ 165 (184)
.+++ .||. |||+||++|+ .+ + |+|. ||++|+. +.+|+ .||+.|+++|++||+|||+|++-
T Consensus 177 g~~~-~tp~~fDn~Yy~~ll---~~~~~-gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 177 GAWT-SNPLIFDNSYFKELL---SGEKE-GLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCCC-CCCCccchHHHHHHh---cCCcC-CCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 1234 6999 9999999999 88 7 8865 9999998 78887 88999999999999999999974
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-34 Score=242.51 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=106.0
Q ss_pred CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCcccccccC---CCCHHHHHHhhccCCCCCCCCCC
Q 038804 23 GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQF---QWKPMCAVDLKRKCPKGNNNSNL 99 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~---~~~~~~~~~l~~~Cp~~~~~~~~ 99 (184)
|||.|+|++||+|++++.+ +++||+|+.++++|++.|+++||+.+|||||. +++ +..|...+ ..
T Consensus 110 GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG-------~ah~~r~g--~~- 176 (251)
T PLN02879 110 GGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLG-------RCHKERSG--FE- 176 (251)
T ss_pred CCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccccc-------cccccccc--CC-
Confidence 9999999999999998754 57899999999999999999999999999994 333 33454322 11
Q ss_pred ccCCCCCCCC-CchhhhHHHHHhcCC--Cccc--ccchHHHHh----hhhHH---hhHHHHHHHHHHHHHHhccCCCCC
Q 038804 100 VVPMNPASPS-IKTTMSVTMLIFYAT--EGTL--LQTKLCLLT----QQHRI---ELKTIWGNKFVAAMVRMGPIGVVT 166 (184)
Q Consensus 100 ~~~~D~~Tp~-FDn~Yy~~ll~~~~~--~~gl--L~SD~~L~~----~~~V~---~d~~~F~~~F~~am~Km~~igv~t 166 (184)
..+| .||. |||+||++|+ .+ + |+ |+||++|+. +.+|+ .||+.||++|++||+|||+||+..
T Consensus 177 -g~~d-~tp~~FDN~Yy~~ll---~~~~~-gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~~ 249 (251)
T PLN02879 177 -GAWT-PNPLIFDNSYFKEIL---SGEKE-GLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFAD 249 (251)
T ss_pred -CCCC-CCccceeHHHHHHHH---cCCcC-CCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCCC
Confidence 1356 6999 9999999999 88 7 77 689999997 77887 899999999999999999999853
No 8
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.4e-35 Score=245.81 Aligned_cols=128 Identities=39% Similarity=0.612 Sum_probs=107.6
Q ss_pred CCcCcchhhhhhhccccee-cC----------------------------------------------------------
Q 038804 2 KDKGVAAGLLRMHFRDCFV-RS---------------------------------------------------------- 22 (184)
Q Consensus 2 ~d~~~~a~llrl~fhDcfv-~g---------------------------------------------------------- 22 (184)
+|++++|+||||+|||||| +|
T Consensus 11 ~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~ 90 (230)
T PF00141_consen 11 KDPTLAPGLLRLAFHDCFVYGGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVEL 90 (230)
T ss_dssp HHTTSHHHHHHHHHHHHTTHTSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHH
T ss_pred HCcCccHHHHHHHccccccccccccceeccccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhcccc
Confidence 4789999999999999999 77
Q ss_pred -CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc----------------------CCCC
Q 038804 23 -GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ----------------------FQWK 79 (184)
Q Consensus 23 -GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL----------------------~~~~ 79 (184)
|||.|+|++||+|+.+|.+.++ .+||.|+.++++|++.|+++|||.+||||| |+|+
T Consensus 91 ~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~rl~~~~dp~~d 169 (230)
T PF00141_consen 91 CGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFSRLYFPPDPTMD 169 (230)
T ss_dssp TTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTGGTSCSSGTTST
T ss_pred ccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceeccccccccccccccc
Confidence 9999999999999999999877 789999999999999999999999999999 1456
Q ss_pred HHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh----hhhHH
Q 038804 80 PMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT----QQHRI 142 (184)
Q Consensus 80 ~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~----~~~V~ 142 (184)
+.|+.+ .|+.++ +..+++| ||. |||+||++|+ +++ |+|+||++|++ +++|+
T Consensus 170 ~~~~~~---~C~~~~---~~~~~~d--tp~~fDN~Yy~~ll---~~~-gll~SD~~L~~d~~t~~~V~ 225 (230)
T PF00141_consen 170 PGYAGQ---NCNSGG---DNGVPLD--TPTVFDNSYYKNLL---NGR-GLLPSDQALLNDPETRPIVE 225 (230)
T ss_dssp HHHHHH---SSSTSG---CTCEESS--STTS-SSHHHHHHH---HTE-EEEHHHHHHHHSTTHHHHHH
T ss_pred ccccee---ccCCCc---ccccccc--CCCcchhHHHHHHh---cCC-CcCHHHHHHhcCHHHHHHHH
Confidence 677766 883322 3377889 899 9999999999 999 99999999997 55653
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.97 E-value=5.5e-31 Score=221.89 Aligned_cols=128 Identities=19% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCcceecCCCCccCCCCc--cccccCCCCCCCcChHHHHHHHHhcCCCcccccccC-CCCHHHHHHh--hccCCCCCCCC
Q 038804 23 GGLGYDVPAGRRDGRASK--ASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQF-QWKPMCAVDL--KRKCPKGNNNS 97 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~-~~~~~~~~~l--~~~Cp~~~~~~ 97 (184)
|||.|+|++||+|+.++. ...+...+|.|+.+++++++.|+++||+.+|||||. +.+ .+ +..|....
T Consensus 100 ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaH-----ti~G~~~~~~~~--- 171 (255)
T cd00314 100 GGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAH-----TLGGKNHGDLLN--- 171 (255)
T ss_pred CCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCe-----eccCcccCCCCC---
Confidence 699999999999999764 334567789999999999999999999999999996 422 22 23343211
Q ss_pred CCccCCCCCCCC-CchhhhHHHHHhcCCC---------------cccccchHHHHh----hhhHH---hhHHHHHHHHHH
Q 038804 98 NLVVPMNPASPS-IKTTMSVTMLIFYATE---------------GTLLQTKLCLLT----QQHRI---ELKTIWGNKFVA 154 (184)
Q Consensus 98 ~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~---------------~glL~SD~~L~~----~~~V~---~d~~~F~~~F~~ 154 (184)
.....+|+.||. |||+||++|+ .++ .++|+||++|+. +.+|+ .|++.|+++|++
T Consensus 172 ~~~~~~~~~tp~~fDN~yy~~l~---~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~ 248 (255)
T cd00314 172 YEGSGLWTSTPFTFDNAYFKNLL---DMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAK 248 (255)
T ss_pred cccCCCCCCCCCccchHHHHHHh---cCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHH
Confidence 111246678999 9999999999 543 178999999998 67777 789999999999
Q ss_pred HHHHhcc
Q 038804 155 AMVRMGP 161 (184)
Q Consensus 155 am~Km~~ 161 (184)
||+||++
T Consensus 249 a~~Km~~ 255 (255)
T cd00314 249 AWIKMVN 255 (255)
T ss_pred HHHHHcC
Confidence 9999985
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.96 E-value=3e-30 Score=217.71 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=116.9
Q ss_pred CCcCcchhhhhhhcccce-------ecC---------------------------------------------------C
Q 038804 2 KDKGVAAGLLRMHFRDCF-------VRS---------------------------------------------------G 23 (184)
Q Consensus 2 ~d~~~~a~llrl~fhDcf-------v~g---------------------------------------------------G 23 (184)
+++++||.+|||+||||| |.| |
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~~VScADiialAa~~AV~~~G 116 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSPRSSMADLIAMGVVTSVASCG 116 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccCccCHHHHHHHHHHHHHHHcC
Confidence 588999999999999999 666 9
Q ss_pred CcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCcccccccC----CCCHHHHHHhhccCCCCCCCCCC
Q 038804 24 GLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQF----QWKPMCAVDLKRKCPKGNNNSNL 99 (184)
Q Consensus 24 GP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL~----~~~~~~~~~l~~~Cp~~~~~~~~ 99 (184)
||.|+|++||+|++++.+. .||.|+.++++|++.|+++||+.+|||+|. +|+..+.......-+.+. ..+.
T Consensus 117 GP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~-~~~~ 191 (264)
T cd08201 117 GPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGS-VPDT 191 (264)
T ss_pred CCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCcc-ccCC
Confidence 9999999999999988753 499999999999999999999999999995 233221111111111111 0113
Q ss_pred ccCCCCCCCC-CchhhhHHHHHhcCCCc---------ccccchHHHHh---hhhHH--hhHHHHHHHHHHHHHHhcc
Q 038804 100 VVPMNPASPS-IKTTMSVTMLIFYATEG---------TLLQTKLCLLT---QQHRI--ELKTIWGNKFVAAMVRMGP 161 (184)
Q Consensus 100 ~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~---------glL~SD~~L~~---~~~V~--~d~~~F~~~F~~am~Km~~ 161 (184)
..+|| .||. |||+||.+++ .+.. -.+.||..+|+ ...++ .+++.|.+.++..+.||.+
T Consensus 192 ~~p~d-stp~~FDn~~f~E~l---~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t~~~l~~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 192 VLQFF-DTTIQFDNKVVTEYL---SGTTNNPLVVGPNNTTNSDLRIFSSDGNVTMNELASPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCC-CCccccchHHHHHHh---cCCCCCceeecCCCCccchhhheecCccHHHHHhcChHHHHHHHHHHHHHHhC
Confidence 56789 5999 9999999999 5541 23689999998 22223 8899999999999999964
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.96 E-value=4.3e-29 Score=220.99 Aligned_cols=148 Identities=17% Similarity=0.268 Sum_probs=120.7
Q ss_pred CCcceecCCCCccCCCCccc-------------------------------------cccCCCCCCCcChHHHHHHHHhc
Q 038804 23 GGLGYDVPAGRRDGRASKAS-------------------------------------EATTNLPSPAFNAKQLTQSFAAK 65 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~~-------------------------------------~a~~~LP~p~~~~~~l~~~F~~k 65 (184)
|||.|++..||.|...+... +....||.|+.++++|++.|++|
T Consensus 148 Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~Rm 227 (409)
T cd00649 148 GFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARM 227 (409)
T ss_pred CCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHc
Confidence 99999999999999754320 11227999999999999999999
Q ss_pred CCCccccccc----------------------CCCCHHHHHHhh--ccCCCCCCCCCCccCCC---CCCCC-CchhhhHH
Q 038804 66 GLTQEDMLIQ----------------------FQWKPMCAVDLK--RKCPKGNNNSNLVVPMN---PASPS-IKTTMSVT 117 (184)
Q Consensus 66 Gl~~~d~VaL----------------------~~~~~~~~~~l~--~~Cp~~~~~~~~~~~~D---~~Tp~-FDn~Yy~~ 117 (184)
|||.+||||| |.+++.++..|+ ..||.+.+.++....+| +.||. |||+||++
T Consensus 228 Glnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~n 307 (409)
T cd00649 228 AMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKN 307 (409)
T ss_pred CCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHH
Confidence 9999999999 346777888885 89997543233345688 47999 99999999
Q ss_pred HHH--hc-------------------------------CCCcccccchHHHHh----hhhHH---hhHHHHHHHHHHHHH
Q 038804 118 MLI--FY-------------------------------ATEGTLLQTKLCLLT----QQHRI---ELKTIWGNKFVAAMV 157 (184)
Q Consensus 118 ll~--~~-------------------------------~~~~glL~SD~~L~~----~~~V~---~d~~~F~~~F~~am~ 157 (184)
|+. |. .+. ++|+||++|+. +.+|+ .|++.||++|++||+
T Consensus 308 Ll~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~-gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~ 386 (409)
T cd00649 308 LFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAP-MMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWF 386 (409)
T ss_pred HHhccceeccCCCCcccccccCccccccCCCccccccccCc-ccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 993 10 044 89999999997 78998 899999999999999
Q ss_pred Hh--ccCCCCCCCCCc
Q 038804 158 RM--GPIGVVTGQAGE 171 (184)
Q Consensus 158 Km--~~igv~tg~~Ge 171 (184)
|| +.+|+++...|.
T Consensus 387 KL~hrdmgp~~~~~g~ 402 (409)
T cd00649 387 KLTHRDMGPKSRYLGP 402 (409)
T ss_pred HHccccCCchhhhcCC
Confidence 99 799999977663
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.93 E-value=1.1e-25 Score=210.39 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=132.5
Q ss_pred cchhhhhhhcccceecCCCcceecCCCCccCCCCc-------------------------------------cccccCCC
Q 038804 6 VAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASK-------------------------------------ASEATTNL 48 (184)
Q Consensus 6 ~~a~llrl~fhDcfv~gGGP~~~v~~GRrD~~~s~-------------------------------------~~~a~~~L 48 (184)
..|+||-|.-.+..+.-|||.|+|.+||+|+..+. +.. ...|
T Consensus 141 S~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg-~~~l 219 (716)
T TIGR00198 141 SWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEG-PDGH 219 (716)
T ss_pred eHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCccc-ccCC
Confidence 47999999999998888999999999999994321 111 2369
Q ss_pred CCCCcChHHHHHHHHhcCCCccccccc----------------------CCCCHHHHHHhhccCCCCCC--CCCCccCCC
Q 038804 49 PSPAFNAKQLTQSFAAKGLTQEDMLIQ----------------------FQWKPMCAVDLKRKCPKGNN--NSNLVVPMN 104 (184)
Q Consensus 49 P~p~~~~~~l~~~F~~kGl~~~d~VaL----------------------~~~~~~~~~~l~~~Cp~~~~--~~~~~~~~D 104 (184)
|.|..++++|++.|+++|||.+||||| |.+++.++..|+..||.+.+ .++....+|
T Consensus 220 PdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglD 299 (716)
T TIGR00198 220 PDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLE 299 (716)
T ss_pred CCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCC
Confidence 999999999999999999999999999 45788899999999985332 122245677
Q ss_pred ---CCCCC-CchhhhHHHHHh--c-----------------------------CCCcccccchHHHHh----hhhHH---
Q 038804 105 ---PASPS-IKTTMSVTMLIF--Y-----------------------------ATEGTLLQTKLCLLT----QQHRI--- 142 (184)
Q Consensus 105 ---~~Tp~-FDn~Yy~~ll~~--~-----------------------------~~~~glL~SD~~L~~----~~~V~--- 142 (184)
+.||. |||+||++|+.+ . .+. ++|+||++|.. +.+|+
T Consensus 300 G~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~-~mL~SDlaL~~Dp~~r~iVe~yA 378 (716)
T TIGR00198 300 VAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNP-IMLDADLALRFDPEFRKISRRFL 378 (716)
T ss_pred CCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccccccccc-CccchhHHhccCccHHHHHHHHh
Confidence 57999 999999999931 0 014 88999999998 78888
Q ss_pred hhHHHHHHHHHHHHHHhc--cCCCCCCCCC
Q 038804 143 ELKTIWGNKFVAAMVRMG--PIGVVTGQAG 170 (184)
Q Consensus 143 ~d~~~F~~~F~~am~Km~--~igv~tg~~G 170 (184)
.|++.|+++|++||+||+ .+|++....|
T Consensus 379 ~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 379 REPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred cCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 889999999999999998 6777665444
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.91 E-value=4.6e-24 Score=198.99 Aligned_cols=147 Identities=17% Similarity=0.275 Sum_probs=116.0
Q ss_pred CCcceecCCCCccCCCCccc--------------------------------------cccCCCCCCCcChHHHHHHHHh
Q 038804 23 GGLGYDVPAGRRDGRASKAS--------------------------------------EATTNLPSPAFNAKQLTQSFAA 64 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~~--------------------------------------~a~~~LP~p~~~~~~l~~~F~~ 64 (184)
|||.|++..||.|....... +-...+|+|..++.+|++.|++
T Consensus 160 Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~R 239 (726)
T PRK15061 160 GFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFAR 239 (726)
T ss_pred CCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHH
Confidence 99999999999998643321 0012389999999999999999
Q ss_pred cCCCccccccc----------------------CCCCHHHHHHhh--ccCCCCCCCCCCccCCC---CCCCC-CchhhhH
Q 038804 65 KGLTQEDMLIQ----------------------FQWKPMCAVDLK--RKCPKGNNNSNLVVPMN---PASPS-IKTTMSV 116 (184)
Q Consensus 65 kGl~~~d~VaL----------------------~~~~~~~~~~l~--~~Cp~~~~~~~~~~~~D---~~Tp~-FDn~Yy~ 116 (184)
||||.+||||| |.+++.++..|+ ..||.+.+.++....+| +.||. |||+||+
T Consensus 240 MGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~ 319 (726)
T PRK15061 240 MAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFE 319 (726)
T ss_pred cCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHH
Confidence 99999999999 346667777775 89997543233345577 57999 9999999
Q ss_pred HHHHh--c-------------------------------CCCcccccchHHHHh----hhhHH---hhHHHHHHHHHHHH
Q 038804 117 TMLIF--Y-------------------------------ATEGTLLQTKLCLLT----QQHRI---ELKTIWGNKFVAAM 156 (184)
Q Consensus 117 ~ll~~--~-------------------------------~~~~glL~SD~~L~~----~~~V~---~d~~~F~~~F~~am 156 (184)
+|+.+ . ... ++|+||++|.. +.+|+ .|++.|+++|++||
T Consensus 320 nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~-~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~ 398 (726)
T PRK15061 320 NLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAP-TMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAW 398 (726)
T ss_pred HHhhCcceeccCCCccccccccCccccccCCcccccccccCc-ccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99931 0 014 89999999997 78888 89999999999999
Q ss_pred HHh--ccCCCCCCCCC
Q 038804 157 VRM--GPIGVVTGQAG 170 (184)
Q Consensus 157 ~Km--~~igv~tg~~G 170 (184)
+|| ..+|+++...|
T Consensus 399 ~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 399 FKLTHRDMGPKSRYLG 414 (726)
T ss_pred HHHcccCCCchhhhcC
Confidence 999 55777765554
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.68 E-value=8.5e-17 Score=137.85 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=97.2
Q ss_pred hcccceecC--------CC-----cceecCCCCccCCCCccccc--cCCCCCCC------------cChHHHHHHHHhcC
Q 038804 14 HFRDCFVRS--------GG-----LGYDVPAGRRDGRASKASEA--TTNLPSPA------------FNAKQLTQSFAAKG 66 (184)
Q Consensus 14 ~fhDcfv~g--------GG-----P~~~v~~GRrD~~~s~~~~a--~~~LP~p~------------~~~~~l~~~F~~kG 66 (184)
-+-|++|.+ || |.|++..||.|...+..... ...+|.+. ...+.|+..|.++|
T Consensus 99 S~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlg 178 (297)
T cd08200 99 SLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLT 178 (297)
T ss_pred cHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCC
Confidence 344666655 67 99999999999987532211 12345332 23478999999999
Q ss_pred CCcccccccCCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHH----hcCC------------Ccc--
Q 038804 67 LTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLI----FYAT------------EGT-- 127 (184)
Q Consensus 67 l~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~----~~~~------------~~g-- 127 (184)
||.+|||||.+ +......|..++. ..++. .+|. |||.||++|+. |... +.|
T Consensus 179 lsd~EmvaL~G-----g~r~lG~~~~~s~----~G~wT-~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~ 248 (297)
T cd08200 179 LTAPEMTVLVG-----GLRVLGANYGGSK----HGVFT-DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEV 248 (297)
T ss_pred CChHHHhheec-----chhhcccCCCCCC----CCCCc-CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCce
Confidence 99999999954 1122345664332 23444 4789 99999999992 3210 001
Q ss_pred ---cccchHHHHh----hhhHH---hh--HHHHHHHHHHHHHHhccCC
Q 038804 128 ---LLQTKLCLLT----QQHRI---EL--KTIWGNKFVAAMVRMGPIG 163 (184)
Q Consensus 128 ---lL~SD~~L~~----~~~V~---~d--~~~F~~~F~~am~Km~~ig 163 (184)
.+++|..|.+ +.+|+ .| |+.||+||++|+.|+.++.
T Consensus 249 ~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 249 KWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 2678988887 78888 44 9999999999999999874
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.44 E-value=3.1e-13 Score=126.92 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=91.6
Q ss_pred CC--cceecCCCCccCCCCcccccc---CCCCCCC------------cChHHHHHHHHhcCCCcccccccCCCCHHHHHH
Q 038804 23 GG--LGYDVPAGRRDGRASKASEAT---TNLPSPA------------FNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVD 85 (184)
Q Consensus 23 GG--P~~~v~~GRrD~~~s~~~~a~---~~LP~p~------------~~~~~l~~~F~~kGl~~~d~VaL~~~~~~~~~~ 85 (184)
|| |.||+..||.|...+.. +++ ..+|... ...+.|+.+|..+|||..|||||.+ +..
T Consensus 544 aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~G-----g~r 617 (726)
T PRK15061 544 AGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVG-----GLR 617 (726)
T ss_pred CCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheec-----chh
Confidence 57 99999999999977532 221 2456533 2348999999999999999999954 111
Q ss_pred hhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHH----hcCC-------------Cccc----ccchHHHHh----hh
Q 038804 86 LKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLI----FYAT-------------EGTL----LQTKLCLLT----QQ 139 (184)
Q Consensus 86 l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~----~~~~-------------~~gl----L~SD~~L~~----~~ 139 (184)
....|...+. ..++- ..|. |||.||++||. |... .+.+ +.+|..|.+ |.
T Consensus 618 ~Lg~~~~~S~----~G~~T-~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa 692 (726)
T PRK15061 618 VLGANYGGSK----HGVFT-DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRA 692 (726)
T ss_pred hcccCCCCCC----CCCCc-CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHH
Confidence 2345654331 23344 4788 99999999992 2100 0111 367888776 78
Q ss_pred hHH---hh--HHHHHHHHHHHHHHhccCC
Q 038804 140 HRI---EL--KTIWGNKFVAAMVRMGPIG 163 (184)
Q Consensus 140 ~V~---~d--~~~F~~~F~~am~Km~~ig 163 (184)
+|+ .| |++|++||++|+.|+.+++
T Consensus 693 ~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 693 LAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 888 55 9999999999999999986
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.38 E-value=1.1e-12 Score=123.69 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCc--ceecCCCCccCCCCccccccCCCC---C------------CCcChHHHHHHHHhcCCCcccccccCCCCHHHHHH
Q 038804 23 GGL--GYDVPAGRRDGRASKASEATTNLP---S------------PAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVD 85 (184)
Q Consensus 23 GGP--~~~v~~GRrD~~~s~~~~a~~~LP---~------------p~~~~~~l~~~F~~kGl~~~d~VaL~~~~~~~~~~ 85 (184)
||| .||+..||.|...+.. +++...| . .....+.|+..|..+|||..|||||.+ +..
T Consensus 532 gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~G-----g~r 605 (716)
T TIGR00198 532 AGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIG-----GMR 605 (716)
T ss_pred CCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheec-----chh
Confidence 787 6899999999986542 2222222 1 123456789999999999999999954 111
Q ss_pred hhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHH----hcC-------------CCc--ccc--cchHHHHh----hh
Q 038804 86 LKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLI----FYA-------------TEG--TLL--QTKLCLLT----QQ 139 (184)
Q Consensus 86 l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~----~~~-------------~~~--glL--~SD~~L~~----~~ 139 (184)
-...|...+. ..++. .+|. |||.||++||. |.. ..+ .++ .+|..|.+ +.
T Consensus 606 ~lG~~~~~s~----~G~~T-~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra 680 (716)
T TIGR00198 606 VLGANHGGSK----HGVFT-DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRA 680 (716)
T ss_pred hccccCCCCC----CCCCc-CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHH
Confidence 1344554331 23344 4789 99999999993 311 011 122 56888776 78
Q ss_pred hHH---hh--HHHHHHHHHHHHHHhccCC
Q 038804 140 HRI---EL--KTIWGNKFVAAMVRMGPIG 163 (184)
Q Consensus 140 ~V~---~d--~~~F~~~F~~am~Km~~ig 163 (184)
+|+ .| ++.|++||++|+.|+.+++
T Consensus 681 ~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 681 VAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 888 45 4899999999999999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=98.73 E-value=7e-08 Score=88.43 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=94.9
Q ss_pred CCcceecCCCCccCCCCcc--------------------------------------ccccCCCCCCCcChHHHHHHHHh
Q 038804 23 GGLGYDVPAGRRDGRASKA--------------------------------------SEATTNLPSPAFNAKQLTQSFAA 64 (184)
Q Consensus 23 GGP~~~v~~GRrD~~~s~~--------------------------------------~~a~~~LP~p~~~~~~l~~~F~~ 64 (184)
|++.|.+..||.|-..+.. +. ++..|+|-.+..+++..|++
T Consensus 173 GfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEG-png~PDpl~aA~dIRetFaR 251 (730)
T COG0376 173 GFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEG-PNGNPDPLAAARDIRETFAR 251 (730)
T ss_pred CCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCC-CCCCCChhhhHHHHHHHHHH
Confidence 8999999999998765544 22 35689999999999999999
Q ss_pred cCCCccccccc----CCCCHHHHH---Hhh-----------------ccCCCCCCCCC----CccCCCCCCCC-Cchhhh
Q 038804 65 KGLTQEDMLIQ----FQWKPMCAV---DLK-----------------RKCPKGNNNSN----LVVPMNPASPS-IKTTMS 115 (184)
Q Consensus 65 kGl~~~d~VaL----~~~~~~~~~---~l~-----------------~~Cp~~~~~~~----~~~~~D~~Tp~-FDn~Yy 115 (184)
+++|.+|.||| ++++.++-+ .+. ..|-.+.+.+. .-+.+. .||+ |||.||
T Consensus 252 MaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt-~tPT~w~n~ff 330 (730)
T COG0376 252 MAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWT-TTPTQWSNEFF 330 (730)
T ss_pred hcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCC-CCcchhhhHHH
Confidence 99999999999 222211111 001 11111111011 012233 4899 999999
Q ss_pred HHHHH--------------hcCCC----------------c-ccccchHHHHh----hhhHH---hhHHHHHHHHHHHHH
Q 038804 116 VTMLI--------------FYATE----------------G-TLLQTKLCLLT----QQHRI---ELKTIWGNKFVAAMV 157 (184)
Q Consensus 116 ~~ll~--------------~~~~~----------------~-glL~SD~~L~~----~~~V~---~d~~~F~~~F~~am~ 157 (184)
.+|+. |.... . .+|.+|.+|-- +.|.+ +|++.|.+.|++|+.
T Consensus 331 ~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWf 410 (730)
T COG0376 331 ENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWF 410 (730)
T ss_pred HHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99983 22110 1 57999999986 55555 899999999999999
Q ss_pred HhccC
Q 038804 158 RMGPI 162 (184)
Q Consensus 158 Km~~i 162 (184)
||..-
T Consensus 411 KLtHR 415 (730)
T COG0376 411 KLTHR 415 (730)
T ss_pred HHhhc
Confidence 99643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.043 Score=51.21 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=81.0
Q ss_pred hhcccceecC-----------CCc--ceecCCCCccCCCCccccccC-CC-C------------CCCcChHHHHHHHHhc
Q 038804 13 MHFRDCFVRS-----------GGL--GYDVPAGRRDGRASKASEATT-NL-P------------SPAFNAKQLTQSFAAK 65 (184)
Q Consensus 13 l~fhDcfv~g-----------GGP--~~~v~~GRrD~~~s~~~~a~~-~L-P------------~p~~~~~~l~~~F~~k 65 (184)
.-.-|-.|.| .|- .+|+..||-|+...-.....- .| | .....-+-|+.+-+-.
T Consensus 527 vSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL 606 (730)
T COG0376 527 VSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLL 606 (730)
T ss_pred cchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHh
Confidence 3445667776 333 467789999986543211000 01 1 1122334567777788
Q ss_pred CCCcccccccCCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHH----hc---------CCC----c-
Q 038804 66 GLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLI----FY---------ATE----G- 126 (184)
Q Consensus 66 Gl~~~d~VaL~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~----~~---------~~~----~- 126 (184)
+|+.-||.+|-+ -||-.--..++ ....+.-| .|. ..|.||.||++ |. .++ |
T Consensus 607 ~LtapemtVLiG-------GlRvLg~n~g~-s~~GVfT~--~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~ 676 (730)
T COG0376 607 TLTAPEMTVLIG-------GLRVLGANYGG-SKHGVFTD--RPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGE 676 (730)
T ss_pred ccCCccceEEEc-------ceEeeccCCCC-Cccceecc--CcccccchhhhhhhhccceeeeccccccceeccccccCc
Confidence 999999999822 12221112121 12233223 578 99999999983 11 111 0
Q ss_pred ---------ccccchHHHHhhhhHH-----hhHHHHHHHHHHHHHHhccCC
Q 038804 127 ---------TLLQTKLCLLTQQHRI-----ELKTIWGNKFVAAMVRMGPIG 163 (184)
Q Consensus 127 ---------glL~SD~~L~~~~~V~-----~d~~~F~~~F~~am~Km~~ig 163 (184)
-++.|...|-. +.+ .+++.|-+||+.|..|.-++.
T Consensus 677 ~kwt~trvDLvfGsns~LRA--~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 677 VKWTATRVDLVFGSNSELRA--LAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred eEeeeeEEeEEecCcHHHHH--HHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 24667777643 333 679999999999999987664
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=73.58 E-value=3.4 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCccccccccc
Q 038804 147 IWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVI 179 (184)
Q Consensus 147 ~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~ 179 (184)
.....|..||.||+.||-.. ..-| +||.|
T Consensus 2 ~m~~~F~~am~KlavLG~d~--~~Li--DCSdV 30 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDR--SDLI--DCSDV 30 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-G--GGSE--E-GGG
T ss_pred hHHHHHHHHHHHHHHhcCCh--hhcc--cchhh
Confidence 35678999999999997532 1233 67765
No 20
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.17 E-value=14 Score=29.77 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=36.6
Q ss_pred ccceecC-CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccc
Q 038804 16 RDCFVRS-GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQED 71 (184)
Q Consensus 16 hDcfv~g-GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d 71 (184)
.|| |.| |--.+|+..||--.++ +-.+|.|...+.++++.|.++.=.-.|
T Consensus 97 ~d~-v~GYg~~hiP~~pgrh~~~v------p~f~Pe~~s~~q~~tswl~rr~pE~~D 146 (187)
T KOG4027|consen 97 KDC-VTGYGMLHIPTEPGRHVCRV------PCFLPEPSSTVQQLTSWLRRRNPEFVD 146 (187)
T ss_pred cce-eeeeeeEecCcCCCceeEEE------eeEecCCHHHHHHHHHHHHhcCccccC
Confidence 466 355 7778999999944444 347999999999999999887644333
No 21
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=32.01 E-value=21 Score=20.25 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.0
Q ss_pred CcccccccCCCCHHHHHHhh
Q 038804 68 TQEDMLIQFQWKPMCAVDLK 87 (184)
Q Consensus 68 ~~~d~VaL~~~~~~~~~~l~ 87 (184)
+.+||..||++++..|..+.
T Consensus 9 s~eeL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 9 SIEELMKLPGIGPKTANAIL 28 (30)
T ss_dssp SHHHHHTSTT-SHHHHHHHH
T ss_pred CHHHHHhCCCcCHHHHHHHH
Confidence 56789999999998877653
No 22
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.48 E-value=92 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=22.7
Q ss_pred ccccchHHHHhhhhHHhhHHHHHHHHHHHHHHhccCCCCCC-CCCcccccccccc
Q 038804 127 TLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTG-QAGEIRANCRVIN 180 (184)
Q Consensus 127 glL~SD~~L~~~~~V~~d~~~F~~~F~~am~Km~~igv~tg-~~GeiR~~C~~~N 180 (184)
|+++|.++- .||.++-.||..-..... ..||||+.=+.-|
T Consensus 63 GvF~seqA~--------------~dw~~~~~~~~~~~~~~~~pdg~~rry~~~~n 103 (127)
T PF06163_consen 63 GVFPSEQAR--------------KDWDKARKKLVDPDLIWKLPDGEIRRYDRRQN 103 (127)
T ss_pred cccccHHHH--------------HHHHHhHHhhccchhhhhCCCccccccccccc
Confidence 777777764 344455555532222222 4799998765554
No 23
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=28.07 E-value=48 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 038804 143 ELKTIWGNKFVAAMVRMG 160 (184)
Q Consensus 143 ~d~~~F~~~F~~am~Km~ 160 (184)
..|+.||+.|+..+.|=+
T Consensus 40 ~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 40 PLQSKFFETFAAPFTKRG 57 (90)
T ss_pred hHHHHHHHHHhhhhhHHH
Confidence 668999999998877643
Done!