BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038806
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From
Arabidopsis Thaliana
Length = 116
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 4 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 63
Query: 111 MIPDCRKRXXXXXXXXXXXXXXXXXXXXXXX-XXXDARSTIADVEKLFQTTEA 162
MIPDC KR DA+ T+ADVEK F T +A
Sbjct: 64 MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 116
>pdb|1H7C|A Chain A, Human Tubulin Chaperone Cofactor A
Length = 108
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT +R+VKE YEKE +++ K + + + YD+K+Q +L ESR IP
Sbjct: 6 VRQIKIKTGVVRRLVKERVXYEKEAKQQEEKIEKXRAEDGENYDIKKQAEILQESRXXIP 65
Query: 114 DCRKR 118
DC++R
Sbjct: 66 DCQRR 70
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIP 113
L IK KR+ KE Y++E++ + A A +KE K DPYDLK+QE VL +++ ++P
Sbjct: 5 QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLP 63
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 30 TVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTC 64
T++ +L + +SP + +K A + LK+ TC
Sbjct: 245 TMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETC 279
>pdb|3R0A|A Chain A, Possible Transcriptional Regulator From Methanosarcina
Mazei Go1 (gi 21227196)
pdb|3R0A|B Chain B, Possible Transcriptional Regulator From Methanosarcina
Mazei Go1 (gi 21227196)
Length = 123
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 45 PDQKVKM-ATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTAD 87
PD+ + A ++LK+ ST +R VK+LH EKE+ + + + D
Sbjct: 39 PDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRSQQNLD 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,384,701
Number of Sequences: 62578
Number of extensions: 102848
Number of successful extensions: 283
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)