BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038806
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04350|TBCA_ARATH Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410
PE=1 SV=2
Length = 113
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 102/113 (90%), Gaps = 1/113 (0%)
Query: 51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60
Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
MIPDC KRLESALA+LK+ L ELEE + +EG EIEDA+ T+ADVEK F T +A
Sbjct: 61 MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113
>sp|O75347|TBCA_HUMAN Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3
Length = 108
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT KR+VKE YEKE +++ K M+ + + YD+K+Q +L ESRMMIP
Sbjct: 6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
DC++RLE+A +L+ L E E++ +E +E ++AR + V
Sbjct: 66 DCQRRLEAAYLDLQRIL-ENEKDLEEAEEYKEARLVLDSV 104
>sp|Q6PEC1|TBCA_RAT Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1
Length = 108
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT KR+VKE YEKE +++ K MK + + Y +K+Q +L ESRMMIP
Sbjct: 6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
DC++RLE+A +L+ L E E++ +E +E ++AR + V
Sbjct: 66 DCQRRLEAAYTDLRQIL-ESEKDLEEAEEYKEARIVLDSV 104
>sp|P48428|TBCA_MOUSE Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=2 SV=3
Length = 108
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT +R+VKE YEKE +++ K MK + + Y +K+Q +L ESRMMIP
Sbjct: 6 VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
DC++RLE+A +L+ L E E++ +E +E ++AR + V
Sbjct: 66 DCQRRLEAAYTDLQQIL-ESEKDLEEAEEYKEARVVLDSV 104
>sp|P48427|TBCA_BOVIN Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3
Length = 108
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT KR+VKE YEKE +++ K MK + + Y +K+Q +L ESRMMIP
Sbjct: 6 VRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
DC++RLE+A +L L E E++ +E +E ++AR + V
Sbjct: 66 DCQRRLEAAHTDL-LQLLESEKDLEEAEEYKEARLVLDSV 104
>sp|P80584|TBCA_RABIT Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1
SV=2
Length = 108
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
VR +KIKT KR+VKE YEKE +++ K M+ + + Y +K+Q +L ESRMMIP
Sbjct: 6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
DC++RLE+A +L+ L E E++ +E +E ++AR + V
Sbjct: 66 DCQRRLEAACTDLQQIL-ESEKDLEEAEEYKEARLVLDSV 104
>sp|P80585|TBCA_CHICK Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2
Length = 108
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
+R +KIKT KR+ KE YEKE +++ K MK + D Y +K+Q +L ESRMMIP
Sbjct: 6 LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65
Query: 114 DCRKRLESALAEL 126
DC++RLE A A+L
Sbjct: 66 DCQRRLEIAHADL 78
>sp|P48606|TBCA_YEAST Tubulin-specific chaperone A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBL2 PE=1 SV=1
Length = 106
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIPD 114
L IK KR+ KE Y++E++ + A A +KE K DPYDLK+QE VL +++ ++P
Sbjct: 5 QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLP- 63
Query: 115 CRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQT 159
L + E K L + + Q +++ DARS I ++L +
Sbjct: 64 ---TLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLDS 105
>sp|Q75JC8|TBCA_DICDI Tubulin-specific chaperone A OS=Dictyostelium discoideum GN=tbca
PE=3 SV=3
Length = 113
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMK-EKGADPYDLKQQENVLAESR 109
+ T R+LKIK KR+ K+ Y+KE + + K ++ D YD+K+Q +L E++
Sbjct: 3 LDTKRSLKIKIDALKRLEKDYMLYKKEEQLQIENVERFKADETKDIYDVKKQIEILDENK 62
Query: 110 MMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIAD 152
MI D R+ + L + L E + E+ +G EI I D
Sbjct: 63 TMIIDSVSRVTAFLVQFSEFLEEHKNED-DGSEIWKDSYDIID 104
>sp|Q9Y703|TBCA_SCHPO Tubulin-specific chaperone A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp31 PE=3 SV=1
Length = 119
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 53 TVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMI 112
TVR+L IKT+ KR++K++ ++ + + G D +++ Q+ VL + +
Sbjct: 4 TVRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEAL 63
Query: 113 PDCRKRLESALAELKA 128
PD RL +A +L++
Sbjct: 64 PDALVRLRNATNDLES 79
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana
GN=RPP13L4 PE=2 SV=2
Length = 852
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 98 LKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLF 157
L++ N+L E + D RK+LE +ELK + L++ ++ + E R+ +AD+ +L
Sbjct: 10 LEKTLNILEEKGRTVSDYRKQLEDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELV 69
Query: 158 QTTE 161
E
Sbjct: 70 YEAE 73
>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3
Length = 2116
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 27 RVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVK----ELHSYEKEVEREA 82
+ GTVN E + +K + + D + ++ +IK+ K+ + +L + +E +RE
Sbjct: 1526 KSGTVNVE-FIRKKDAEIDDLRARLDRETESRIKSDEDKKNTRKQFADLEAKVEEAQREV 1584
Query: 83 AKTADMKEK-GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAA 129
+K+K +D DL Q + +SR+ I +K+LE LAE +AA
Sbjct: 1585 VTIDRLKKKLESDIIDLSTQLDTETKSRIKIEKSKKKLEQTLAERRAA 1632
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 55 RNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPD 114
RNL+ R++KEL S + + ++E A+ + +G LK+ + E R D
Sbjct: 1708 RNLEELQKEIDRMLKELRSKDLQTQKEVAEDELVAAEGL----LKRVNKLFGEPRAQNED 1763
Query: 115 CRKRLESALAELKAALTE 132
K L+ LAE K L +
Sbjct: 1764 MEKDLQQKLAEYKNKLDD 1781
>sp|P05659|MYSN_ACACA Myosin-2 heavy chain, non muscle OS=Acanthamoeba castellanii PE=3
SV=1
Length = 1509
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 16/72 (22%)
Query: 90 EKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEEN-----------Q 138
E+GAD D++ + + + +++ + +K LE LA+ +A +LEEE Q
Sbjct: 1037 ERGAD--DVRNELDDVTATKLQLEKTKKSLEEELAQTRA---QLEEEKSGKEAASSKAKQ 1091
Query: 139 EGQEIEDARSTI 150
GQ++EDARS +
Sbjct: 1092 LGQQLEDARSEV 1103
>sp|Q8AWF5|NDC80_XENLA Kinetochore protein NDC80 homolog OS=Xenopus laevis GN=ndc80 PE=1
SV=2
Length = 638
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIPD 114
NL+ +R+++E+ EKE E E + A M++ K + D+++ +N L E
Sbjct: 262 NLEALQQESRRLMEEIERLEKEKENEPDRLASMRKLKASLQADIQKYQNYLTEIESHSTL 321
Query: 115 CRKRLESALAELKAALTELE-----EENQEGQEIED-ARSTIADVEKL-FQTTE 161
+R+ S EL+A TELE +EN + I D + ++AD+E++ ++ TE
Sbjct: 322 LDQRVSSISEELEA--TELESRAIQQENLRLKNILDNQKYSVADIERIKYEETE 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,218,800
Number of Sequences: 539616
Number of extensions: 1918797
Number of successful extensions: 9347
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 8889
Number of HSP's gapped (non-prelim): 824
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)