Query 038806
Match_columns 162
No_of_seqs 105 out of 236
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3470 Beta-tubulin folding c 100.0 1.4E-33 2.9E-38 212.9 11.7 101 54-155 5-105 (107)
2 PF02970 TBCA: Tubulin binding 100.0 7.5E-32 1.6E-36 197.4 11.6 90 56-146 1-90 (90)
3 PF06013 WXG100: Proteins of 1 75.0 12 0.00027 24.4 5.5 35 56-90 1-35 (86)
4 PF10458 Val_tRNA-synt_C: Valy 70.8 29 0.00062 23.6 6.6 47 64-116 6-52 (66)
5 PF06160 EzrA: Septation ring 70.7 50 0.0011 31.2 10.3 102 59-160 98-206 (560)
6 PRK13411 molecular chaperone D 70.1 1.1E+02 0.0023 29.5 13.7 88 61-153 504-591 (653)
7 cd07635 BAR_GRAF2 The Bin/Amph 67.0 78 0.0017 26.8 10.0 90 65-158 66-157 (207)
8 PF06160 EzrA: Septation ring 66.3 53 0.0012 31.0 9.5 105 50-158 45-153 (560)
9 PF02609 Exonuc_VII_S: Exonucl 63.3 22 0.00048 23.2 4.7 42 120-161 2-47 (53)
10 PF03962 Mnd1: Mnd1 family; I 63.1 83 0.0018 25.7 12.2 56 25-95 47-102 (188)
11 TIGR01991 HscA Fe-S protein as 61.2 1.5E+02 0.0033 28.1 12.3 85 62-154 491-576 (599)
12 PTZ00186 heat shock 70 kDa pre 61.0 1.1E+02 0.0024 29.6 10.7 87 63-155 531-617 (657)
13 PRK01433 hscA chaperone protei 60.9 77 0.0017 30.2 9.6 83 63-153 486-569 (595)
14 PF12777 MT: Microtubule-bindi 60.9 1.2E+02 0.0026 26.7 10.7 22 140-161 81-102 (344)
15 PRK00290 dnaK molecular chaper 58.1 1.7E+02 0.0036 27.8 11.2 84 62-153 503-587 (627)
16 PF06008 Laminin_I: Laminin Do 56.6 1.2E+02 0.0026 25.5 9.5 19 105-123 173-191 (264)
17 PRK05183 hscA chaperone protei 56.3 95 0.0021 29.6 9.3 83 64-154 509-592 (616)
18 PF10732 DUF2524: Protein of u 54.4 71 0.0015 23.7 6.4 20 139-158 35-54 (84)
19 KOG0933 Structural maintenance 53.7 2E+02 0.0043 30.3 11.4 101 31-133 643-781 (1174)
20 PRK10476 multidrug resistance 53.6 1.2E+02 0.0027 26.0 9.0 14 139-152 150-163 (346)
21 TIGR02350 prok_dnaK chaperone 53.3 2E+02 0.0043 27.0 12.2 43 108-155 545-587 (595)
22 PLN03184 chloroplast Hsp70; Pr 53.3 2.2E+02 0.0048 27.5 13.2 83 63-153 543-626 (673)
23 TIGR01280 xseB exodeoxyribonuc 52.5 56 0.0012 22.6 5.5 43 119-161 3-49 (67)
24 TIGR01010 BexC_CtrB_KpsE polys 52.1 1.6E+02 0.0035 25.6 12.0 90 62-159 170-260 (362)
25 PRK04778 septation ring format 51.6 69 0.0015 30.2 7.6 99 62-160 105-210 (569)
26 PRK14067 exodeoxyribonuclease 50.7 46 0.00099 24.1 4.9 43 119-161 9-55 (80)
27 PTZ00009 heat shock 70 kDa pro 50.3 1.3E+02 0.0028 28.9 9.2 35 98-132 548-585 (653)
28 COG4477 EzrA Negative regulato 49.0 98 0.0021 30.1 8.1 94 68-161 110-210 (570)
29 CHL00094 dnaK heat shock prote 48.6 2.5E+02 0.0053 26.7 11.3 40 109-153 550-589 (621)
30 PTZ00400 DnaK-type molecular c 48.2 2.6E+02 0.0057 26.9 12.8 85 63-155 545-630 (663)
31 TIGR00998 8a0101 efflux pump m 48.1 1.7E+02 0.0036 24.7 12.7 27 11-37 46-73 (334)
32 PRK14068 exodeoxyribonuclease 46.8 74 0.0016 22.8 5.5 44 118-161 7-54 (76)
33 PRK14064 exodeoxyribonuclease 45.7 62 0.0013 23.0 4.9 44 118-161 7-54 (75)
34 PRK04778 septation ring format 45.5 2.4E+02 0.0053 26.6 10.2 103 51-157 50-156 (569)
35 PRK14066 exodeoxyribonuclease 44.6 84 0.0018 22.4 5.5 44 118-161 5-52 (75)
36 COG1722 XseB Exonuclease VII s 43.6 73 0.0016 23.1 5.1 47 113-159 6-56 (81)
37 PRK14063 exodeoxyribonuclease 43.2 90 0.002 22.2 5.4 43 119-161 7-53 (76)
38 cd07639 BAR_ACAP1 The Bin/Amph 40.8 2.2E+02 0.0047 23.9 10.0 83 66-159 68-151 (200)
39 PF14267 DUF4357: Domain of un 40.8 9.1 0.0002 25.8 0.0 14 5-18 20-33 (55)
40 KOG0996 Structural maintenance 39.5 1.6E+02 0.0035 31.2 8.5 59 93-157 932-993 (1293)
41 KOG4360 Uncharacterized coiled 39.3 1.4E+02 0.0031 29.0 7.6 71 63-133 213-287 (596)
42 PRK01885 greB transcription el 39.0 97 0.0021 24.6 5.6 51 110-160 6-66 (157)
43 PF04156 IncA: IncA protein; 38.0 2E+02 0.0043 22.6 10.0 30 61-90 87-116 (191)
44 PF03961 DUF342: Protein of un 37.8 3E+02 0.0066 25.0 9.3 68 65-132 337-407 (451)
45 PRK14068 exodeoxyribonuclease 37.7 1.5E+02 0.0033 21.2 6.1 60 71-133 5-64 (76)
46 KOG3377 Uncharacterized conser 36.6 1.7E+02 0.0038 23.6 6.7 60 65-124 65-140 (143)
47 KOG4809 Rab6 GTPase-interactin 35.3 2.1E+02 0.0045 28.2 8.0 83 69-154 331-414 (654)
48 PF08317 Spc7: Spc7 kinetochor 34.8 3.1E+02 0.0067 23.9 11.8 93 63-158 174-268 (325)
49 PHA02562 46 endonuclease subun 34.2 3.5E+02 0.0075 24.6 9.1 17 142-158 256-272 (562)
50 PRK14065 exodeoxyribonuclease 33.6 1.8E+02 0.0038 21.8 5.8 23 139-161 58-80 (86)
51 COG5150 Class 2 transcription 33.3 78 0.0017 25.5 4.2 43 66-108 86-129 (148)
52 PRK00409 recombination and DNA 33.2 4E+02 0.0087 26.5 9.9 94 61-155 515-621 (782)
53 PF08912 Rho_Binding: Rho Bind 33.0 1.3E+02 0.0029 21.4 4.9 62 64-131 5-66 (69)
54 PF07058 Myosin_HC-like: Myosi 32.1 2.6E+02 0.0055 25.7 7.7 43 93-135 7-49 (351)
55 TIGR01462 greA transcription e 31.8 1.2E+02 0.0027 23.5 5.1 48 111-158 2-59 (151)
56 PF00458 WHEP-TRS: WHEP-TRS do 31.5 1.2E+02 0.0026 20.6 4.3 33 75-107 2-34 (56)
57 TIGR03545 conserved hypothetic 31.3 4.7E+02 0.01 25.1 9.7 45 77-121 192-237 (555)
58 TIGR01069 mutS2 MutS2 family p 31.2 5.4E+02 0.012 25.6 10.6 92 64-155 513-610 (771)
59 COG3096 MukB Uncharacterized p 31.0 1.7E+02 0.0037 30.4 6.9 77 81-157 346-430 (1480)
60 TIGR01461 greB transcription e 31.0 1.7E+02 0.0037 23.2 5.8 51 110-160 4-64 (156)
61 PF02344 Myc-LZ: Myc leucine z 30.5 1.3E+02 0.0028 18.6 3.9 28 65-92 4-31 (32)
62 PF10482 CtIP_N: Tumour-suppre 30.0 1.9E+02 0.0042 22.8 5.8 43 72-114 10-63 (120)
63 PRK14067 exodeoxyribonuclease 29.8 2.2E+02 0.0047 20.6 5.8 58 71-131 6-63 (80)
64 PF10896 DUF2714: Protein of u 29.6 60 0.0013 26.1 3.0 33 6-43 50-82 (145)
65 PF08657 DASH_Spc34: DASH comp 29.5 1.4E+02 0.0031 25.9 5.5 26 66-91 191-216 (259)
66 cd07606 BAR_SFC_plant The Bin/ 29.4 3.3E+02 0.0072 22.6 11.2 83 66-159 70-154 (202)
67 PF02315 MDH: Methanol dehydro 29.3 83 0.0018 23.8 3.5 36 65-100 57-92 (93)
68 PF12329 TMF_DNA_bd: TATA elem 29.2 2E+02 0.0044 20.1 8.2 66 62-129 1-66 (74)
69 PTZ00419 valyl-tRNA synthetase 28.8 1.5E+02 0.0032 30.0 6.2 57 61-118 928-986 (995)
70 cd00939 MetRS_RNA MetRS_RNA bi 28.4 1.2E+02 0.0027 20.0 3.8 31 75-105 2-32 (45)
71 TIGR03017 EpsF chain length de 28.3 4.2E+02 0.0091 23.4 9.9 30 62-91 171-200 (444)
72 PF07870 DUF1657: Protein of u 28.1 55 0.0012 21.5 2.1 24 106-129 26-49 (50)
73 PF13747 DUF4164: Domain of un 27.8 2.3E+02 0.005 20.6 5.6 22 112-133 6-27 (89)
74 cd00687 Terpene_cyclase_nonpla 27.6 1.6E+02 0.0034 24.6 5.3 38 42-79 186-223 (303)
75 PLN02943 aminoacyl-tRNA ligase 27.6 2.3E+02 0.0049 28.8 7.3 52 62-114 889-942 (958)
76 COG1849 Uncharacterized protei 26.7 2.8E+02 0.006 20.8 6.0 49 110-158 1-53 (90)
77 PRK05729 valS valyl-tRNA synth 26.5 2.4E+02 0.0053 28.0 7.2 50 60-110 809-860 (874)
78 PRK14143 heat shock protein Gr 26.5 4.2E+02 0.009 22.8 9.2 69 63-132 68-136 (238)
79 PF06409 NPIP: Nuclear pore co 26.2 4.6E+02 0.01 23.2 9.9 142 9-159 14-173 (265)
80 smart00252 SH2 Src homology 2 26.1 54 0.0012 22.1 1.9 21 4-25 12-32 (84)
81 KOG1621 1D-myo-inositol-tripho 25.9 77 0.0017 29.7 3.4 36 9-47 386-423 (458)
82 PRK14858 tatA twin arginine tr 25.8 1.6E+02 0.0036 22.5 4.7 40 112-151 25-67 (108)
83 COG4477 EzrA Negative regulato 25.5 3.1E+02 0.0066 26.8 7.3 64 88-154 88-152 (570)
84 KOG2122 Beta-catenin-binding p 25.4 4E+02 0.0086 29.8 8.6 68 63-130 69-139 (2195)
85 PRK00226 greA transcription el 25.1 2E+02 0.0044 22.4 5.3 43 110-152 6-58 (157)
86 cd07307 BAR The Bin/Amphiphysi 25.0 2.8E+02 0.0061 20.3 8.5 61 59-119 91-151 (194)
87 PRK06231 F0F1 ATP synthase sub 25.0 3.9E+02 0.0085 22.0 8.1 36 98-133 88-123 (205)
88 TIGR00999 8a0102 Membrane Fusi 24.9 3.2E+02 0.0069 22.0 6.6 20 139-158 52-71 (265)
89 PF02335 Cytochrom_C552: Cytoc 24.6 3.7E+02 0.0081 25.1 7.7 21 138-158 323-343 (434)
90 cd05492 Bromo_ZMYND11 Bromodom 24.6 2.7E+02 0.0058 21.0 5.7 46 116-161 61-107 (109)
91 PF00435 Spectrin: Spectrin re 23.9 2.2E+02 0.0047 18.7 8.3 31 61-91 33-63 (105)
92 PF10498 IFT57: Intra-flagella 23.6 5.6E+02 0.012 23.2 10.8 98 62-159 241-346 (359)
93 PF06810 Phage_GP20: Phage min 23.5 2.9E+02 0.0063 21.9 5.9 43 66-108 24-66 (155)
94 PF15290 Syntaphilin: Golgi-lo 23.3 2.4E+02 0.0053 25.4 5.9 14 54-67 60-73 (305)
95 PHA00489 scaffolding protein 23.3 1.7E+02 0.0037 22.3 4.3 36 59-94 24-59 (101)
96 PRK14070 exodeoxyribonuclease 23.2 2.8E+02 0.006 19.6 6.1 42 94-135 14-55 (69)
97 PRK14900 valS valyl-tRNA synth 23.1 2.2E+02 0.0048 29.3 6.3 53 60-112 840-893 (1052)
98 PF10267 Tmemb_cc2: Predicted 23.0 6.1E+02 0.013 23.5 9.6 66 57-128 207-272 (395)
99 PF03207 OspD: Borrelia outer 22.6 2.1E+02 0.0046 24.3 5.2 52 102-153 140-192 (254)
100 PF14362 DUF4407: Domain of un 22.3 4.9E+02 0.011 22.1 9.5 23 139-161 180-202 (301)
101 PRK15030 multidrug efflux syst 22.2 3.3E+02 0.0071 24.1 6.6 20 71-90 98-117 (397)
102 KOG3312 Predicted membrane pro 22.2 1.6E+02 0.0034 24.6 4.2 40 72-111 37-82 (186)
103 PF09789 DUF2353: Uncharacteri 22.1 5.9E+02 0.013 23.0 9.1 35 55-89 2-36 (319)
104 PRK12495 hypothetical protein; 22.1 1.6E+02 0.0034 25.6 4.3 46 117-162 179-224 (226)
105 PF05701 WEMBL: Weak chloropla 21.9 6.7E+02 0.015 23.6 9.9 52 69-124 211-263 (522)
106 PF00846 Hanta_nucleocap: Hant 21.9 3.7E+02 0.0081 25.3 7.0 40 62-101 2-42 (428)
107 smart00787 Spc7 Spc7 kinetocho 21.5 5.7E+02 0.012 22.6 11.6 95 62-159 168-264 (312)
108 PRK14154 heat shock protein Gr 21.5 5E+02 0.011 22.0 9.0 68 64-132 54-121 (208)
109 COG0711 AtpF F0F1-type ATP syn 21.4 4.1E+02 0.0089 20.9 6.4 28 63-90 27-54 (161)
110 PF04111 APG6: Autophagy prote 21.4 5.7E+02 0.012 22.5 12.2 88 62-158 43-130 (314)
111 PRK00977 exodeoxyribonuclease 21.3 3.1E+02 0.0068 19.5 7.0 58 72-132 10-67 (80)
112 KOG0100 Molecular chaperones G 21.2 3.9E+02 0.0084 25.9 7.1 90 62-153 543-633 (663)
113 KOG0243 Kinesin-like protein [ 21.2 4.7E+02 0.01 27.5 8.1 128 29-157 358-520 (1041)
114 PRK05892 nucleoside diphosphat 21.2 3.6E+02 0.0078 21.4 6.0 50 110-159 7-65 (158)
115 PF07026 DUF1317: Protein of u 21.1 1.3E+02 0.0028 21.1 3.0 46 27-80 9-54 (60)
116 PF05193 Peptidase_M16_C: Pept 20.9 1.9E+02 0.0041 20.7 4.1 31 120-150 154-184 (184)
117 cd07638 BAR_ACAP2 The Bin/Amph 20.9 5E+02 0.011 21.7 11.0 83 66-159 68-151 (200)
118 PRK13410 molecular chaperone D 20.8 7.8E+02 0.017 23.9 13.9 80 64-151 507-591 (668)
119 PRK09859 multidrug efflux syst 20.3 3.9E+02 0.0085 23.4 6.6 16 73-88 96-111 (385)
No 1
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=212.91 Aligned_cols=101 Identities=48% Similarity=0.744 Sum_probs=97.1
Q ss_pred cccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806 54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 54 lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~ 133 (162)
+|||+||||+||||+||+.||++|+.++++|+++|+++|.|+|+||+|++||+||.||||||++||++|++||++++..
T Consensus 5 vrqL~IKt~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~l~~- 83 (107)
T KOG3470|consen 5 VRQLVIKTGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESILAD- 83 (107)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHhc-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred hhcCCCchhHHHHHHHHHHHHH
Q 038806 134 EEENQEGQEIEDARSTIADVEK 155 (162)
Q Consensus 134 e~~~~~teEl~~Ake~L~~a~~ 155 (162)
++.+.++++|..|..+|.++..
T Consensus 84 ~~~~ee~~e~~~A~~~l~~~k~ 105 (107)
T KOG3470|consen 84 EQYLEETPELKSANTYLDSAKA 105 (107)
T ss_pred ccchhccHHHHHHHHHHHHHHh
Confidence 5678899999999999998875
No 2
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=99.97 E-value=7.5e-32 Score=197.39 Aligned_cols=90 Identities=51% Similarity=0.764 Sum_probs=81.9
Q ss_pred cchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 038806 56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE 135 (162)
Q Consensus 56 qLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~ 135 (162)
||+||||+|+||+||+.||++|+.+|++++++|+++|+|+|+||+|.+||+||++|||||.+||.+|+.+|+++|.+++.
T Consensus 1 QLkIkt~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 1 QLKIKTGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cCCCchhHHHH
Q 038806 136 ENQEGQEIEDA 146 (162)
Q Consensus 136 ~~~~teEl~~A 146 (162)
.++.+++.+|
T Consensus 81 -~ee~~~akeA 90 (90)
T PF02970_consen 81 -LEELEEAKEA 90 (90)
T ss_dssp -CCCSHHHHHH
T ss_pred -chhHHHHhhC
Confidence 4444444443
No 3
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=75.03 E-value=12 Score=24.44 Aligned_cols=35 Identities=9% Similarity=0.257 Sum_probs=28.7
Q ss_pred cchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038806 56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE 90 (162)
Q Consensus 56 qLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKa 90 (162)
||+|..+.|.++.+....+..++...-..+.....
T Consensus 1 qi~vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 1 QIKVDPEQLRAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HBTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999988888777765443
No 4
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=70.76 E-value=29 Score=23.59 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHH
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCR 116 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~ 116 (162)
+.||-|+...+++++...+.++ ++..|.=|-=.+|++..+.-+-+..
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL------~n~~F~~kAP~eVve~er~kl~~~~ 52 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKL------SNENFVEKAPEEVVEKEREKLEELE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------CSTTHHHHS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------cCccccccCCHHHHHHHHHHHHHHH
Confidence 5788888888888888777776 2334444444444444444443333
No 5
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.75 E-value=50 Score=31.16 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=58.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--
Q 038806 59 IKTSTCKRVVKELHSYEKEVEREAAKTADMKEK-GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE-- 135 (162)
Q Consensus 59 IKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKae-g~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~-- 135 (162)
-...+++.+-.....++.++......++.+... ...--.|..-.+...+.+.-+-+-......|+..|+..|...+.
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 334556666677777777777777777776653 12223344444444444444444444444444444444444332
Q ss_pred ----cCCCchhHHHHHHHHHHHHHHhhhh
Q 038806 136 ----ENQEGQEIEDARSTIADVEKLFQTT 160 (162)
Q Consensus 136 ----~~~~teEl~~Ake~L~~a~~~le~~ 160 (162)
.+.+.-++.+|+++|..++..+...
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 2335568889999998888776544
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=70.10 E-value=1.1e+02 Score=29.49 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=54.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 61 TSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEG 140 (162)
Q Consensus 61 TgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~t 140 (162)
...++|+.++...|..+-.....+.+..-.-..=-|.++..-+ +....+-|+-+.++...+.+++++|.+ ...+.
T Consensus 504 ~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~---~~~~~ 578 (653)
T PRK13411 504 SNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD---PNISL 578 (653)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc---CCCCH
Confidence 3447777777777765554444443322221111244443332 345677888899999999999999974 22356
Q ss_pred hhHHHHHHHHHHH
Q 038806 141 QEIEDARSTIADV 153 (162)
Q Consensus 141 eEl~~Ake~L~~a 153 (162)
+++.+..+.|++.
T Consensus 579 ~~~~~~~~el~~~ 591 (653)
T PRK13411 579 EELKQQLEEFQQA 591 (653)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 7
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=67.00 E-value=78 Score=26.75 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhc--CCCchh
Q 038806 65 KRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEE--NQEGQE 142 (162)
Q Consensus 65 KRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~--~~~teE 142 (162)
--.++|...|..|+.++...+-. . .+.-.+..-.+..+|=...+-|.+++..++-+++...++-+-.- ....++
T Consensus 66 ~~sl~ef~~~~~el~d~r~~L~~--~--~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e 141 (207)
T cd07635 66 DASLQEFSNFLKNLEEQREIMAL--N--VTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQ 141 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccH
Confidence 45577888899999888876521 1 23456677788888999999999999999999999999765322 224559
Q ss_pred HHHHHHHHHHHHHHhh
Q 038806 143 IEDARSTIADVEKLFQ 158 (162)
Q Consensus 143 l~~Ake~L~~a~~~le 158 (162)
+.+|-+.|...+..+.
T Consensus 142 ~~EA~~~l~~~r~~F~ 157 (207)
T cd07635 142 LQEADVQVEQNRQHFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987776543
No 8
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.34 E-value=53 Score=31.00 Aligned_cols=105 Identities=17% Similarity=0.320 Sum_probs=73.5
Q ss_pred cccccccchhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHHhh---cCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHH
Q 038806 50 KMATVRNLKIKTSTCKRVVKE-LHSYEKEVEREAAKTADMKE---KGADPYDLKQQENVLAESRMMIPDCRKRLESALAE 125 (162)
Q Consensus 50 ~~~~lrqLkIKTgvVKRL~KE-~~~Y~kE~~eq~~kvekmKa---eg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~d 125 (162)
....+++|... |-...++.. ...|..=....-..++.+-. +..+-|.+++....+.+...+|-.+...+..-.+.
T Consensus 45 el~kvk~l~l~-Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~ 123 (560)
T PF06160_consen 45 ELSKVKKLNLT-GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDE 123 (560)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777654 444444433 34444333355566665542 35888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhh
Q 038806 126 LKAALTELEEENQEGQEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 126 L~~~l~e~e~~~~~teEl~~Ake~L~~a~~~le 158 (162)
|.+++...+ .+-.++.+.++....+++.+-
T Consensus 124 l~~L~~~e~---~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 124 LDELLESEE---KNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 999997643 255677777777776666543
No 9
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=63.31 E-value=22 Score=23.19 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 120 ESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 120 ~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
..++..|++++...++. .. .-..|..|..+++.++..|+.++
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e 47 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAE 47 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655432 11 33578888888888888777654
No 10
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.15 E-value=83 Score=25.74 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=41.6
Q ss_pred cccccccceEEEEeecCCCCCcccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 25 PHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADP 95 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~De 95 (162)
.-.+|+.||.-+.-+ .....+...+.+|.++....+.++.+.+.+++..+..-.+.
T Consensus 47 ~EKiGssn~YWsFps---------------~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 47 VEKIGSSNYYWSFPS---------------QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred hhhccCeeEEEecCh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346778887766211 23356778899999999999999999999999997644443
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=61.23 E-value=1.5e+02 Score=28.09 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=49.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLA-ESRMMIPDCRKRLESALAELKAALTELEEENQEG 140 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLe-ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~t 140 (162)
..+.+++++..-|..+-.....+.+.... .+.|-..- +..+. +...+-++-+.++...+.+++.+|.+. +.
T Consensus 491 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~ 562 (599)
T TIGR01991 491 EEIERMLKDSFKHAEEDMYARALAEQKVE--AERILEAL-QAALAADGDLLSEDERAAIDAAMEALQKALQGD-----DA 562 (599)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHH-HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-----CH
Confidence 34667777766554443333333222111 22222222 44443 455677999999999999999999632 44
Q ss_pred hhHHHHHHHHHHHH
Q 038806 141 QEIEDARSTIADVE 154 (162)
Q Consensus 141 eEl~~Ake~L~~a~ 154 (162)
+++..+.+-|.+.-
T Consensus 563 ~~~~~~~~~l~~~~ 576 (599)
T TIGR01991 563 DAIKAAIEALEEAT 576 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665543
No 12
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=61.02 E-value=1.1e+02 Score=29.65 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=56.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQE 142 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teE 142 (162)
.+.|+++|..-|..+-.....+++... .-+.-+...+..++|...+.++-+.++..++..++.+|.. . ..+.++
T Consensus 531 ~i~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~ 604 (657)
T PTZ00186 531 QIEQMIRDSEQHAEADRVKRELVEVRN---NAETQLTTAERQLGEWKYVSDAEKENVKTLVAELRKAMEN--P-NVAKDD 604 (657)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhc--C-CcCHHH
Confidence 477888888877666655555543222 2334555666666655678888889999999999999962 1 124467
Q ss_pred HHHHHHHHHHHHH
Q 038806 143 IEDARSTIADVEK 155 (162)
Q Consensus 143 l~~Ake~L~~a~~ 155 (162)
+..+.+-|...-.
T Consensus 605 ~~~~~~~l~~~~~ 617 (657)
T PTZ00186 605 LAAATDKLQKAVM 617 (657)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655433
No 13
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=60.94 E-value=77 Score=30.21 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=54.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHH-HhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAE-SRMMIPDCRKRLESALAELKAALTELEEENQEGQ 141 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeE-T~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~te 141 (162)
-+.|+.+|..-|.+|-.....+++.... -+.-+-..+..++| +..+.++-+..+..++.+++++|... +..
T Consensus 486 ei~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~-----~~~ 557 (595)
T PRK01433 486 EIDIMLENAYKNAKIDYTTRLLQEAVIE---AEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHAR-----DII 557 (595)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-----CHH
Confidence 3788888887777666555555542222 33445556666665 45677888999999999999999632 445
Q ss_pred hHHHHHHHHHHH
Q 038806 142 EIEDARSTIADV 153 (162)
Q Consensus 142 El~~Ake~L~~a 153 (162)
.+.++.+-|+..
T Consensus 558 ~~~~~~~~~~~~ 569 (595)
T PRK01433 558 LINNSIKEFKSK 569 (595)
T ss_pred HHHHHHHHHHHH
Confidence 666555555433
No 14
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.87 E-value=1.2e+02 Score=26.74 Aligned_cols=22 Identities=9% Similarity=0.418 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhc
Q 038806 140 GQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 140 teEl~~Ake~L~~a~~~le~~~ 161 (162)
..++..|.-+|.+|+.+|++|.
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3688899999999999988874
No 15
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=58.08 E-value=1.7e+02 Score=27.79 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=47.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLA-ESRMMIPDCRKRLESALAELKAALTELEEENQEG 140 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLe-ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~t 140 (162)
.-++++.++...+..+-.....+.+... .-+.-|-..+..|+ -...+-|+-+.+|...+++++++|... +.
T Consensus 503 e~i~~~~~~~~~~~~~d~~~~~~~eakN---~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~-----~~ 574 (627)
T PRK00290 503 EEIERMVKDAEANAEEDKKRKELVEARN---QADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE-----DK 574 (627)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC-----CH
Confidence 3466666666655544333333332221 12222333333333 334567888999999999999999632 44
Q ss_pred hhHHHHHHHHHHH
Q 038806 141 QEIEDARSTIADV 153 (162)
Q Consensus 141 eEl~~Ake~L~~a 153 (162)
+++.+..+-|++.
T Consensus 575 ~~i~~k~~~L~~~ 587 (627)
T PRK00290 575 EAIKAKTEELTQA 587 (627)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 16
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.57 E-value=1.2e+02 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=8.7
Q ss_pred HHHHhhhchhHHHHHHHHH
Q 038806 105 LAESRMMIPDCRKRLESAL 123 (162)
Q Consensus 105 LeET~~MIPD~~~RL~~A~ 123 (162)
.++++.+.+....+|...-
T Consensus 173 ~~~~~~l~~~i~~~L~~~~ 191 (264)
T PF06008_consen 173 QQENESLAEAIRDDLNDYN 191 (264)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 17
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=56.26 E-value=95 Score=29.58 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=45.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLA-ESRMMIPDCRKRLESALAELKAALTELEEENQEGQE 142 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLe-ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teE 142 (162)
+.++.++...|..+-.....+.+.... . +.-|-..+..++ +...+-++-+.++...+.+++.+|... +.++
T Consensus 509 i~~~~~~~~~~~~~d~~~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----d~~~ 580 (616)
T PRK05183 509 IARMLKDSMSHAEEDMQARALAEQKVE--A-ERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD-----DADA 580 (616)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHH--H-HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-----CHHH
Confidence 555555555554433333322221111 1 122233333443 445667888899999999999999632 4456
Q ss_pred HHHHHHHHHHHH
Q 038806 143 IEDARSTIADVE 154 (162)
Q Consensus 143 l~~Ake~L~~a~ 154 (162)
+.++.+-|++.-
T Consensus 581 ~~~~~~~l~~~~ 592 (616)
T PRK05183 581 IEAAIKALDKAT 592 (616)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 18
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=54.36 E-value=71 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 038806 139 EGQEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 139 ~teEl~~Ake~L~~a~~~le 158 (162)
++.||.+|+..|+.+-..|+
T Consensus 35 nd~eYt~Aq~~LE~a~neL~ 54 (84)
T PF10732_consen 35 NDEEYTEAQQMLEEAYNELE 54 (84)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 19
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.66 E-value=2e+02 Score=30.29 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=49.9
Q ss_pred cceEEEEeec-----CCCCCcccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----------
Q 038806 31 VNCEVLLIRK-----TSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADP---------- 95 (162)
Q Consensus 31 ~~~~~~~~~~-----~~~~~~~~~~~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~De---------- 95 (162)
.+|-+|+..+ ..+|..|.++...- +-++-.-++-+.+++.--++|+...+..++.+++...--
T Consensus 643 i~~rsVTl~GDV~dP~GtlTGGs~~~~a~--~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~ 720 (1174)
T KOG0933|consen 643 IRTRSVTLEGDVYDPSGTLTGGSRSKGAD--LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELK 720 (1174)
T ss_pred cccceeeecCceeCCCCcccCCCCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666544 34554442222111 333444455555666666666666665555555432222
Q ss_pred --------------------hhhHhHHHHHHHHhhhchhHHHHHHHH---HHHHHHHHHHH
Q 038806 96 --------------------YDLKQQENVLAESRMMIPDCRKRLESA---LAELKAALTEL 133 (162)
Q Consensus 96 --------------------ydIKkQ~eVLeET~~MIPD~~~RL~~A---~~dL~~~l~e~ 133 (162)
-+++.-.+-++|+++=|++...-+.+. +..|+.-+..+
T Consensus 721 ~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~ 781 (1174)
T KOG0933|consen 721 LHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA 781 (1174)
T ss_pred HHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 233444555666777777665555443 33444444443
No 20
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=53.57 E-value=1.2e+02 Score=26.03 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=5.8
Q ss_pred CchhHHHHHHHHHH
Q 038806 139 EGQEIEDARSTIAD 152 (162)
Q Consensus 139 ~teEl~~Ake~L~~ 152 (162)
...+|.+|+..+..
T Consensus 150 S~~~~~~a~~~~~~ 163 (346)
T PRK10476 150 SAQQVDQARTAQRD 163 (346)
T ss_pred CHHHHHHHHHHHHH
Confidence 33344444444433
No 21
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=53.34 E-value=2e+02 Score=26.98 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=31.4
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 038806 108 SRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEK 155 (162)
Q Consensus 108 T~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teEl~~Ake~L~~a~~ 155 (162)
...+-|+-+.+|...+++++++|... +.+++.++.+-|++.-.
T Consensus 545 ~~~~~~~e~~~l~~~l~~~~~wL~~~-----d~~~i~~~~~~l~~~~~ 587 (595)
T TIGR02350 545 GDKLPAEEKEKIEKAVAELKEALKGE-----DVEEIKAKTEELQQALQ 587 (595)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999642 44677777776665433
No 22
>PLN03184 chloroplast Hsp70; Provisional
Probab=53.28 E-value=2.2e+02 Score=27.55 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=44.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLA-ESRMMIPDCRKRLESALAELKAALTELEEENQEGQ 141 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLe-ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~te 141 (162)
.++|+.++...|..+-.....+.+..-. .+.| |-..+..|. -...+-|+-+..|.+++++++++|... +.+
T Consensus 543 ei~~~~~~~~~~~~~D~~~~~~~eakN~--lE~~-iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~-----d~~ 614 (673)
T PLN03184 543 EVERMVQEAEKFAKEDKEKRDAVDTKNQ--ADSV-VYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG-----STQ 614 (673)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHh--HHHH-HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC-----CHH
Confidence 3566666666555443333333221111 2222 222223333 344667888899999999999999642 345
Q ss_pred hHHHHHHHHHHH
Q 038806 142 EIEDARSTIADV 153 (162)
Q Consensus 142 El~~Ake~L~~a 153 (162)
++.++.+.|.+.
T Consensus 615 ~ik~~~~~l~~~ 626 (673)
T PLN03184 615 KMKDAMAALNQE 626 (673)
T ss_pred HHHHHHHHHHHH
Confidence 565555555443
No 23
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=52.47 E-value=56 Score=22.65 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 119 LESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 119 L~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
.+.++..|+.++...+.. .. .-..|..|.++++.++..|+..+
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae 49 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAE 49 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888766542 11 33467777777777777766543
No 24
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.13 E-value=1.6e+02 Score=25.62 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=55.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC-Cc
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQ-EG 140 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~t 140 (162)
.++.-+-++...+++++.+.+.++..++... ...++..+.... -.....|+..+.+++.-+.+....+. +.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~-~~~d~~~~~~~~-------~~~i~~L~~~l~~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN-KVFDPKAQSSAQ-------LSLISTLEGELIRVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcChHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 5667778888888888888888888888763 334444433222 22233344444444444444333333 47
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 038806 141 QEIEDARSTIADVEKLFQT 159 (162)
Q Consensus 141 eEl~~Ake~L~~a~~~le~ 159 (162)
+.+..++.-+...+..+..
T Consensus 242 P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 8888888888777766654
No 25
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=51.57 E-value=69 Score=30.18 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=54.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh-----
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEK-GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE----- 135 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKae-g~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~----- 135 (162)
..+.-+-.....++..+......++.+... ...--.|.+-.+...+.+.-|-.-...+..|+..|+..|...+.
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f 184 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQF 184 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666642 12233444444444444444333333334444445444444332
Q ss_pred -cCCCchhHHHHHHHHHHHHHHhhhh
Q 038806 136 -ENQEGQEIEDARSTIADVEKLFQTT 160 (162)
Q Consensus 136 -~~~~teEl~~Ake~L~~a~~~le~~ 160 (162)
.+.+.-++.+|+++|..++..+..+
T Consensus 185 ~~l~~~Gd~~~A~e~l~~l~~~~~~l 210 (569)
T PRK04778 185 VELTESGDYVEAREILDQLEEELAAL 210 (569)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 2346678999999998888776554
No 26
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=50.72 E-value=46 Score=24.08 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhc-C--C-CchhHHHHHHHHHHHHHHhhhhc
Q 038806 119 LESALAELKAALTELEEE-N--Q-EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 119 L~~A~~dL~~~l~e~e~~-~--~-~teEl~~Ake~L~~a~~~le~~~ 161 (162)
+..++..|++++...+.. . + .-..|..|..+++.++..|+.++
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae 55 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKAR 55 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788877766532 1 1 34578888888888877776653
No 27
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=50.25 E-value=1.3e+02 Score=28.88 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.8
Q ss_pred hHhHHHHHHH---HhhhchhHHHHHHHHHHHHHHHHHH
Q 038806 98 LKQQENVLAE---SRMMIPDCRKRLESALAELKAALTE 132 (162)
Q Consensus 98 IKkQ~eVLeE---T~~MIPD~~~RL~~A~~dL~~~l~e 132 (162)
|-..+..|++ ...+-|+-+.+|.+.+.+++++|.+
T Consensus 548 Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~ 585 (653)
T PTZ00009 548 CYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK 585 (653)
T ss_pred HHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 3344445543 3567888899999999999999963
No 28
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=48.96 E-value=98 Score=30.09 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh------cCCCc
Q 038806 68 VKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE------ENQEG 140 (162)
Q Consensus 68 ~KE~~~Y~kE~~eq~~kvekmKa-eg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~------~~~~t 140 (162)
---..+|++-++....-+..+.. +....-.|.+-.+..+|.++=+-+-.-.+..++..|+.-|...+. .+.++
T Consensus 110 e~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~ 189 (570)
T COG4477 110 EQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSS 189 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 33445666666666666655554 234445566666666666665555555555555555555444332 12366
Q ss_pred hhHHHHHHHHHHHHHHhhhhc
Q 038806 141 QEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 141 eEl~~Ake~L~~a~~~le~~~ 161 (162)
-.+.+|.++|..++..+..++
T Consensus 190 Gd~ieA~evl~~~ee~~~~L~ 210 (570)
T COG4477 190 GDYIEAREVLEEAEEHMIALR 210 (570)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 789999999999999887764
No 29
>CHL00094 dnaK heat shock protein 70
Probab=48.63 E-value=2.5e+02 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.4
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 038806 109 RMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153 (162)
Q Consensus 109 ~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teEl~~Ake~L~~a 153 (162)
..+-|+-+.+|...+.+++++|.+. +.+++.++.+-|++.
T Consensus 550 ~~~~~~~~~~~~~~l~~~~~wl~~~-----~~~~~~~~~~~l~~~ 589 (621)
T CHL00094 550 DKISEEKKEKIENLIKKLRQALQND-----NYESIKSLLEELQKA 589 (621)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHH
Confidence 3456788899999999999999642 335666666666554
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=48.21 E-value=2.6e+02 Score=26.94 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=49.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLA-ESRMMIPDCRKRLESALAELKAALTELEEENQEGQ 141 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLe-ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~te 141 (162)
.++++.++...|..+-.....+.+.... .+.| |-..++.+. -...+-|+-+.+|...+.+++++|... +.+
T Consensus 545 ei~~~~~~~~~~~~~D~~~~~~~eakN~--lEs~-iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~-----d~~ 616 (663)
T PTZ00400 545 EIEKMVKEAEEYKEQDEKKKELVDAKNE--AETL-IYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE-----DVD 616 (663)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH--HHHH-HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC-----CHH
Confidence 3566666666555444333333322211 2222 222333333 345667888899999999999999642 456
Q ss_pred hHHHHHHHHHHHHH
Q 038806 142 EIEDARSTIADVEK 155 (162)
Q Consensus 142 El~~Ake~L~~a~~ 155 (162)
++.++.+-|++.-.
T Consensus 617 ~i~~k~~eL~~~l~ 630 (663)
T PTZ00400 617 SIKDKTKQLQEASW 630 (663)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765533
No 31
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=48.06 E-value=1.7e+02 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=12.1
Q ss_pred cCCCceeeE-EeeeccccccccceEEEE
Q 038806 11 NSPSVGTFI-VSFQRPHRVGTVNCEVLL 37 (162)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 37 (162)
.+|.-|... +.+...-+|.+..-++.+
T Consensus 46 ~a~~~G~V~~i~v~~G~~V~kGq~L~~l 73 (334)
T TIGR00998 46 SSQVSGSVIEVNVDDTDYVKQGDVLVRL 73 (334)
T ss_pred cccCceEEEEEEeCCCCEEcCCCEEEEE
Confidence 344444333 333444455555555443
No 32
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=46.77 E-value=74 Score=22.76 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 118 RLESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 118 RL~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
....++..|+.++...+.. .. .-..|..|..++..++..|+..+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae 54 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAE 54 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888776542 21 33578888888888888777654
No 33
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=45.69 E-value=62 Score=23.03 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 118 RLESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 118 RL~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
.+..++..|+.++...++. .. .-..|..|..+++.++..|+..+
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae 54 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAE 54 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888776542 21 33577888888877777776543
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.53 E-value=2.4e+02 Score=26.57 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=72.5
Q ss_pred ccccccchhhhhhHhHHHHHHH-HHHHHHHHHHHHHHHHhh---cCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHH
Q 038806 51 MATVRNLKIKTSTCKRVVKELH-SYEKEVEREAAKTADMKE---KGADPYDLKQQENVLAESRMMIPDCRKRLESALAEL 126 (162)
Q Consensus 51 ~~~lrqLkIKTgvVKRL~KE~~-~Y~kE~~eq~~kvekmKa---eg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL 126 (162)
...+++|.. ||-....+..+. .|..=+...-..|+.+-. +..|-|.+++....+.+...+|-.+..++..-...|
T Consensus 50 l~kvk~l~l-~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 50 LEKVKKLNL-TGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHhcCCC-CcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655 554444444433 333324444555555442 358899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Q 038806 127 KAALTELEEENQEGQEIEDARSTIADVEKLF 157 (162)
Q Consensus 127 ~~~l~e~e~~~~~teEl~~Ake~L~~a~~~l 157 (162)
..++...+ ++..++.+.+......++.+
T Consensus 129 ~~l~~~e~---~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 129 QELLESEE---KNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 99997643 36678888887777766654
No 35
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=44.60 E-value=84 Score=22.40 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 118 RLESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 118 RL~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
....++..|+.++...++. .. .-..|..+.++++.++..|+.++
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae 52 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAE 52 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888876542 22 33578888888888887777654
No 36
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=43.58 E-value=73 Score=23.11 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhh
Q 038806 113 PDCRKRLESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQT 159 (162)
Q Consensus 113 PD~~~RL~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~ 159 (162)
|...-....++..|+.++...+.. .. .-..|..+.++...++..|++
T Consensus 6 ~~~~~sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~ 56 (81)
T COG1722 6 PKSALSFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQ 56 (81)
T ss_pred CcchhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335677777787777766531 11 223566666665555555554
No 37
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.17 E-value=90 Score=22.21 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHHHHHhhhhc
Q 038806 119 LESALAELKAALTELEEE-NQ---EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 119 L~~A~~dL~~~l~e~e~~-~~---~teEl~~Ake~L~~a~~~le~~~ 161 (162)
+..++..|+.++...+.. .. .-..|..+..+++.++..|+.++
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE 53 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQ 53 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766532 11 33467777777777777666543
No 38
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.81 E-value=2.2e+02 Score=23.87 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC-CchhHH
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQ-EGQEIE 144 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~teEl~ 144 (162)
..++|...|+.++-++-.++ -+..-...++|=..-+-|++++..++-.++...+.-+..... -..++.
T Consensus 68 ~~l~ei~~~~~~Ll~~~~~~-----------l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~ 136 (200)
T cd07639 68 DGLNHILDSHAELLEATQFS-----------FKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVE 136 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHH
Confidence 35678888888887664332 233455666666667778999999999999998876543222 345888
Q ss_pred HHHHHHHHHHHHhhh
Q 038806 145 DARSTIADVEKLFQT 159 (162)
Q Consensus 145 ~Ake~L~~a~~~le~ 159 (162)
+|.+.|..++..+..
T Consensus 137 Ea~~~l~~~R~~F~~ 151 (200)
T cd07639 137 EAAAALLGARATFRD 151 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877766543
No 39
>PF14267 DUF4357: Domain of unknown function (DUF4357)
Probab=40.77 E-value=9.1 Score=25.81 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=10.9
Q ss_pred cccccccCCCceee
Q 038806 5 ARDLIFNSPSVGTF 18 (162)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (162)
.+|..|+|||...-
T Consensus 20 ~~d~~F~SPS~AA~ 33 (55)
T PF14267_consen 20 TQDYLFSSPSAAAA 33 (55)
T ss_pred ecCeEcCChHHHHH
Confidence 47899999997543
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.52 E-value=1.6e+02 Score=31.25 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=35.3
Q ss_pred CCchhhHhHHHHHHHHhhhchhHHHHHHHHHHH---HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Q 038806 93 ADPYDLKQQENVLAESRMMIPDCRKRLESALAE---LKAALTELEEENQEGQEIEDARSTIADVEKLF 157 (162)
Q Consensus 93 ~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~d---L~~~l~e~e~~~~~teEl~~Ake~L~~a~~~l 157 (162)
..++.|.+...-+.++.+++-++...+..-..+ ++..+.+++ .+|.+|.+.|.+++..+
T Consensus 932 ~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~------~~~~e~~~~~~E~k~~~ 993 (1293)
T KOG0996|consen 932 TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELE------KEYKEAEESLKEIKKEL 993 (1293)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 456777788888888999988888854443333 333444333 34555555554444433
No 41
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.30 E-value=1.4e+02 Score=29.03 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKG----ADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg----~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~ 133 (162)
.+.++.+|+..--+|+..|.+.+-++-+.= ...-.+..+.+-+.+.....-|+++-++.-..+|++--.+.
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665532 33456667788888888888888888888777777654443
No 42
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=38.99 E-value=97 Score=24.63 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=35.7
Q ss_pred hhchhHHHHHHHHHHHHHHH--------HHHH--hhcCCCchhHHHHHHHHHHHHHHhhhh
Q 038806 110 MMIPDCRKRLESALAELKAA--------LTEL--EEENQEGQEIEDARSTIADVEKLFQTT 160 (162)
Q Consensus 110 ~MIPD~~~RL~~A~~dL~~~--------l~e~--e~~~~~teEl~~Ake~L~~a~~~le~~ 160 (162)
.|-|....+|+..+..|+.. +.+. ..|+.+..||.+|++.....+.-+..+
T Consensus 6 ~lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L 66 (157)
T PRK01885 6 YITREGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFL 66 (157)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888652 3333 235568889999999987766655443
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.97 E-value=2e+02 Score=22.59 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=17.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038806 61 TSTCKRVVKELHSYEKEVEREAAKTADMKE 90 (162)
Q Consensus 61 TgvVKRL~KE~~~Y~kE~~eq~~kvekmKa 90 (162)
...+.++.+|.........+....+..++.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555555555555554
No 44
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.80 E-value=3e+02 Score=24.98 Aligned_cols=68 Identities=26% Similarity=0.368 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 038806 65 KRVVKELHSYEKEVEREAAKTADMKE---KGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTE 132 (162)
Q Consensus 65 KRL~KE~~~Y~kE~~eq~~kvekmKa---eg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e 132 (162)
++|.++......++.+.+..+.+++. .+..+-+.+.+...+.++...+-.-...|..-+..|++.+..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443 233345556666666666666666666666666666665543
No 45
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.66 E-value=1.5e+02 Score=21.16 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806 71 LHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 71 ~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~ 133 (162)
..+|+.=+.+.+.=|++|.+ .+-.|.......++-..++-.|..+|.+|=.++..++...
T Consensus 5 ~~sfEeal~~Le~IV~~LE~---gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~~ 64 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDN---ETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEE 64 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35777777777777777765 3566888899999999999999999999999999988653
No 46
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=1.7e+02 Score=23.65 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------Hhh---cCCCchhhHhHHH-----HHHHHhhhchhHHHHHHHHHH
Q 038806 65 KRVVKELHSYEKEVEREAAKTAD--------MKE---KGADPYDLKQQEN-----VLAESRMMIPDCRKRLESALA 124 (162)
Q Consensus 65 KRL~KE~~~Y~kE~~eq~~kvek--------mKa---eg~DeydIKkQ~e-----VLeET~~MIPD~~~RL~~A~~ 124 (162)
-+|.+=-.|.+.|+.+.+.|+++ +++ .|..+-+..+|.+ .+++.-..||...+|+..|+.
T Consensus 65 ~pl~~aQ~~~~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~ 140 (143)
T KOG3377|consen 65 PPLTKAQQYVQSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALS 140 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35778889999999999999976 322 2444566777755 689999999999999998864
No 47
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.33 E-value=2.1e+02 Score=28.23 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC-CchhHHHHH
Q 038806 69 KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQ-EGQEIEDAR 147 (162)
Q Consensus 69 KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~teEl~~Ak 147 (162)
-|...|++|.....++|..++++ .-+---+.--|+|.-.-+..+--++..-+.+|+=+|+.-.+.+. =...+.+|+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~---l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAE---LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999888873 22222222334444444445555555555555555543322222 223556666
Q ss_pred HHHHHHH
Q 038806 148 STIADVE 154 (162)
Q Consensus 148 e~L~~a~ 154 (162)
+++.+|.
T Consensus 408 ~~~ddar 414 (654)
T KOG4809|consen 408 NIEDDAR 414 (654)
T ss_pred HhhHhhh
Confidence 6655543
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.84 E-value=3.1e+02 Score=23.94 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=50.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKE--KGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEG 140 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKa--eg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~t 140 (162)
.|..++-+...++.++...-..+....+ +.-|.-.+...+.-|.+...-|...++.|...-.+|..+-...+. -+
T Consensus 174 ~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~---~~ 250 (325)
T PF08317_consen 174 QLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE---LE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 3444555555566666555555555554 246677777777777777777776666555544444443332211 23
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 038806 141 QEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 141 eEl~~Ake~L~~a~~~le 158 (162)
++..+.++.|++++...+
T Consensus 251 ~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 251 EQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555544443
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.24 E-value=3.5e+02 Score=24.62 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHhh
Q 038806 142 EIEDARSTIADVEKLFQ 158 (162)
Q Consensus 142 El~~Ake~L~~a~~~le 158 (162)
.+..++..+..++..++
T Consensus 256 ~L~~l~~~~~~~~~~l~ 272 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIE 272 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555544444443
No 50
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.58 E-value=1.8e+02 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHHHHhhhhc
Q 038806 139 EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 139 ~teEl~~Ake~L~~a~~~le~~~ 161 (162)
+...+..|+.+|+.|+..++.|+
T Consensus 58 G~~lL~eAqk~LE~AkLe~~eI~ 80 (86)
T PRK14065 58 AMQELFLAQKLLENAYLEYEKLQ 80 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666666666654
No 51
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=33.28 E-value=78 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhhHhHHHHHHHH
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEKGAD-PYDLKQQENVLAES 108 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKaeg~D-eydIKkQ~eVLeET 108 (162)
-++++..-|+--...-+.|+.|+++.|-. +--++||++++.-+
T Consensus 86 ~~~e~~~n~k~~qK~ke~k~sKFk~SGls~eELlrQQeeLf~~a 129 (148)
T COG5150 86 SCMEEHENYKSYQKQKESKISKFKDSGLSMEELLRQQEELFQNA 129 (148)
T ss_pred HHHHHHHHHHHHHhhchhhhhHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555555655555667889999999944 45567777776544
No 52
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.18 E-value=4e+02 Score=26.48 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=50.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCc----------hhhHhHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 038806 61 TSTCKRVVKELHSYEKEVEREAAKTADMKEKG---ADP----------YDLKQQENVLAESRMMIPDCRKRLESALAELK 127 (162)
Q Consensus 61 TgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg---~De----------ydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~ 127 (162)
..-+.+|+.++.-.++++++....+++.+++- ..+ -.-+...+..+|...++-.++...++.+.+|+
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666555555554321 111 12222345566667777777777777777776
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 038806 128 AALTELEEENQEGQEIEDARSTIADVEK 155 (162)
Q Consensus 128 ~~l~e~e~~~~~teEl~~Ake~L~~a~~ 155 (162)
+.-.. ........+..+|+..|..+..
T Consensus 595 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 595 QLQKG-GYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred Hhhhc-ccchhhHHHHHHHHHHHHHhhh
Confidence 53210 0011244566677776766544
No 53
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=32.98 E-value=1.3e+02 Score=21.44 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALT 131 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~ 131 (162)
|.-|.+|..-.-+-+..++..+++++.+......|+.+-+-.=-+++ .-=..|+++|.++|+
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~------~LK~QAVNKLAEIMN 66 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTER------TLKQQAVNKLAEIMN 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH------HHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHc
Confidence 34455555555555555555555555543333444433221111112 122468888888875
No 54
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=32.14 E-value=2.6e+02 Score=25.68 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 038806 93 ADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE 135 (162)
Q Consensus 93 ~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~ 135 (162)
+--+++++|.++.+|--+.+--+.+-=..-+.+|...+.+.++
T Consensus 7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999988877555556666666666544
No 55
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=31.81 E-value=1.2e+02 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=32.3
Q ss_pred hchhHHHHHHHHHHHHHHH--------HHHHh--hcCCCchhHHHHHHHHHHHHHHhh
Q 038806 111 MIPDCRKRLESALAELKAA--------LTELE--EENQEGQEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 111 MIPD~~~RL~~A~~dL~~~--------l~e~e--~~~~~teEl~~Ake~L~~a~~~le 158 (162)
|-|....||+..++.|... +.+.. .|+.+..+|.+|++.....+.-+.
T Consensus 2 ~T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~ 59 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIA 59 (151)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHH
Confidence 4567788888888888753 33332 345577789999998876554443
No 56
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=31.54 E-value=1.2e+02 Score=20.56 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHH
Q 038806 75 EKEVEREAAKTADMKEKGADPYDLKQQENVLAE 107 (162)
Q Consensus 75 ~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeE 107 (162)
..++..|-..|-+||+++++.-+|+...+.|-+
T Consensus 2 ~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~ 34 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 356788999999999998887777666655543
No 57
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.30 E-value=4.7e+02 Score=25.13 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhcC-CCchhhHhHHHHHHHHhhhchhHHHHHHH
Q 038806 77 EVEREAAKTADMKEKG-ADPYDLKQQENVLAESRMMIPDCRKRLES 121 (162)
Q Consensus 77 E~~eq~~kvekmKaeg-~DeydIKkQ~eVLeET~~MIPD~~~RL~~ 121 (162)
++++-+++++.++... +++-+|.+..+-+++.+.=+-..+..+..
T Consensus 192 ~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 192 DLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665522 66666766666666544444433333333
No 58
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.15 E-value=5.4e+02 Score=25.60 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchhhHhHHHHHHHHhh-----hchhHHHHHHHHHHHHHHHHHHHhhcC
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKG-ADPYDLKQQENVLAESRM-----MIPDCRKRLESALAELKAALTELEEEN 137 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg-~DeydIKkQ~eVLeET~~-----MIPD~~~RL~~A~~dL~~~l~e~e~~~ 137 (162)
+.+|+.++.-.++++++....+++.+.+- ...-.++.+.+-+++-+. .--.+.+-+.+|-.+++.++.+.....
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~ 592 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKK 592 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CCchhHHHHHHHHHHHHH
Q 038806 138 QEGQEIEDARSTIADVEK 155 (162)
Q Consensus 138 ~~teEl~~Ake~L~~a~~ 155 (162)
....+..+|+..|.....
T Consensus 593 ~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 593 IHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred ccHHHHHHHHHHHHHHHH
No 59
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.04 E-value=1.7e+02 Score=30.39 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCCC-chhhHhHHHHHHHHhhhchhHHHHHHH---HHHHHHHHHHHHhhcCC--Cc--hhHHHHHHHHHH
Q 038806 81 EAAKTADMKEKGAD-PYDLKQQENVLAESRMMIPDCRKRLES---ALAELKAALTELEEENQ--EG--QEIEDARSTIAD 152 (162)
Q Consensus 81 q~~kvekmKaeg~D-eydIKkQ~eVLeET~~MIPD~~~RL~~---A~~dL~~~l~e~e~~~~--~t--eEl~~Ake~L~~ 152 (162)
+++||++..++-.+ -|.+..|.+|++|.---+.+..-|... .++.|++.|..+-..++ -+ =.|.+|-.+|+.
T Consensus 346 ~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALek 425 (1480)
T COG3096 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALER 425 (1480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455555443111 255555555555555555555555443 35666777766654443 22 367888888887
Q ss_pred HHHHh
Q 038806 153 VEKLF 157 (162)
Q Consensus 153 a~~~l 157 (162)
|+...
T Consensus 426 Ak~Lc 430 (1480)
T COG3096 426 AKELC 430 (1480)
T ss_pred HHHhc
Confidence 77654
No 60
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=30.95 E-value=1.7e+02 Score=23.22 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=33.6
Q ss_pred hhchhHHHHHHHHHHHHHH--------HHHHH--hhcCCCchhHHHHHHHHHHHHHHhhhh
Q 038806 110 MMIPDCRKRLESALAELKA--------ALTEL--EEENQEGQEIEDARSTIADVEKLFQTT 160 (162)
Q Consensus 110 ~MIPD~~~RL~~A~~dL~~--------~l~e~--e~~~~~teEl~~Ake~L~~a~~~le~~ 160 (162)
.|=|....||+..+..|.. -|.+. ..|+.+..||.+|++-+...+.-+..+
T Consensus 4 ~lT~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L 64 (156)
T TIGR01461 4 LITPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFL 64 (156)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 3556677777777777753 12222 235558889999999988777655544
No 61
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.48 E-value=1.3e+02 Score=18.64 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038806 65 KRVVKELHSYEKEVEREAAKTADMKEKG 92 (162)
Q Consensus 65 KRL~KE~~~Y~kE~~eq~~kvekmKaeg 92 (162)
+||+-|..--++.-++...+++.|++.+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5788888888888888889999888754
No 62
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=29.96 E-value=1.9e+02 Score=22.76 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCC----------chhhHhHHHHHHHHhhhchh
Q 038806 72 HSYEKEVEREAAKTADMKEK-GAD----------PYDLKQQENVLAESRMMIPD 114 (162)
Q Consensus 72 ~~Y~kE~~eq~~kvekmKae-g~D----------eydIKkQ~eVLeET~~MIPD 114 (162)
..-.+|+...+.++.+++.+ +.| -..++-|..+|.|+..++.+
T Consensus 10 E~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~ 63 (120)
T PF10482_consen 10 EIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLEN 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999875 333 36688899999999887764
No 63
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.79 E-value=2.2e+02 Score=20.56 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 038806 71 LHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALT 131 (162)
Q Consensus 71 ~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~ 131 (162)
..+|+.=+...+.=|.+|.+ .+-.|....+.++|-...+-.|+.+|.+|=.++..+..
T Consensus 6 ~~sfEeal~~LEeIV~~LE~---~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l~~ 63 (80)
T PRK14067 6 TADFEQQLARLQEIVDALEG---GDLPLEESVALYKEGLGLARACREQLAKARNEIRLFTE 63 (80)
T ss_pred cCCHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34676666666666666665 45667888889999999999999999999888876654
No 64
>PF10896 DUF2714: Protein of unknown function (DUF2714); InterPro: IPR021222 This family of proteins with unknown function appears to be restricted to Mycoplasmataceae.
Probab=29.58 E-value=60 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=27.3
Q ss_pred ccccccCCCceeeEEeeeccccccccceEEEEeecCCC
Q 038806 6 RDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSP 43 (162)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (162)
+|++|. .|++||.+.+|-+.+.-.|+++.+-++
T Consensus 50 ~diVf~-----~FvIswn~n~kfs~~~LVP~l~~~E~S 82 (145)
T PF10896_consen 50 YDIVFK-----DFVISWNKNLKFSSDKLVPILSTKESS 82 (145)
T ss_pred heEeee-----eeEEEEeccCCccccceEEEeecccCc
Confidence 466665 499999999999999999988887554
No 65
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.55 E-value=1.4e+02 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEK 91 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKae 91 (162)
.|.-+..+|+.++.+|++.++.|...
T Consensus 191 ~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 191 QLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46678899999999999999999763
No 66
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.42 E-value=3.3e+02 Score=22.62 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC--CchhH
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQ--EGQEI 143 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~--~teEl 143 (162)
..++|...|+..+-.|-+++ -+..-.+.++|=..-+-|++++..++-.++...+.-+-.-.. ..+++
T Consensus 70 ~~l~ei~~~~~~L~~q~~~~-----------l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~ 138 (202)
T cd07606 70 SALREIGSYKEVLRSQVEHM-----------LNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEIL 138 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 45779999999987776653 233445566666666778999999999999998876533222 34677
Q ss_pred HHHHHHHHHHHHHhhh
Q 038806 144 EDARSTIADVEKLFQT 159 (162)
Q Consensus 144 ~~Ake~L~~a~~~le~ 159 (162)
.+|.+.|..++..+..
T Consensus 139 ~ea~~~l~~~R~~F~~ 154 (202)
T cd07606 139 AAAEEDLGTTRSAFET 154 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776665543
No 67
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=29.29 E-value=83 Score=23.76 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 038806 65 KRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQ 100 (162)
Q Consensus 65 KRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKk 100 (162)
+-|-|...+-+.-.+..+.|++.|+..|.=.||+++
T Consensus 57 ~ELnKQ~~si~~me~RN~kR~~~fkkTGk~~ydV~k 92 (93)
T PF02315_consen 57 KELNKQQESIKAMEERNAKRVENFKKTGKFVYDVKK 92 (93)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHSS--SSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEeccc
Confidence 445666666666667788899999999999999876
No 68
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.22 E-value=2e+02 Score=20.11 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=37.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAA 129 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~ 129 (162)
|++.++++|..---..+.+.-.++.+-.- ...--||+.+.-+.|...-+-....|+...-.++..+
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el--~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKEL--KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555555555433222 3445666666666666666666666666655555443
No 69
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=28.77 E-value=1.5e+02 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=38.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhhHhHHHHHHHHhhhchhHHHH
Q 038806 61 TSTCKRVVKELHSYEKEVEREAAKTAD--MKEKGADPYDLKQQENVLAESRMMIPDCRKR 118 (162)
Q Consensus 61 TgvVKRL~KE~~~Y~kE~~eq~~kvek--mKaeg~DeydIKkQ~eVLeET~~MIPD~~~R 118 (162)
..-+.||.|+..-+++|++..++++.. +.+ .+.+..+.+.++-+.+.+..+-....+
T Consensus 928 ~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~-kAp~~vve~e~~kl~~~~~~l~~l~~~ 986 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSLESYLKKISIPNYED-KVPEDVRKLNDEKIDELNEEIKQLEQA 986 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999888888733 222 255666777777777666655444443
No 70
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=28.36 E-value=1.2e+02 Score=19.96 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHhHHHHH
Q 038806 75 EKEVEREAAKTADMKEKGADPYDLKQQENVL 105 (162)
Q Consensus 75 ~kE~~eq~~kvekmKaeg~DeydIKkQ~eVL 105 (162)
..++..|-.+|-++|++++|.-.|+-...+|
T Consensus 2 ~~~I~~QGekVR~LKa~ka~k~~i~~eV~~L 32 (45)
T cd00939 2 EKEVAEQGNKVRKLKASKADKSVWQPEVNKL 32 (45)
T ss_pred hHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3578899999999999988876655444433
No 71
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.35 E-value=4.2e+02 Score=23.43 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=24.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEK 91 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKae 91 (162)
.+..=|-.+....++++...+.+++.|+.+
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999999999975
No 72
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=28.14 E-value=55 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHH
Q 038806 106 AESRMMIPDCRKRLESALAELKAA 129 (162)
Q Consensus 106 eET~~MIPD~~~RL~~A~~dL~~~ 129 (162)
++.++|+..+-..+...+++|+..
T Consensus 26 ~~AK~~y~~~a~~l~~ii~~L~~r 49 (50)
T PF07870_consen 26 QEAKQMYEQAAQQLEEIIQDLEPR 49 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHcc
Confidence 467788888888888888887653
No 73
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.75 E-value=2.3e+02 Score=20.58 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 038806 112 IPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 112 IPD~~~RL~~A~~dL~~~l~e~ 133 (162)
+++..+||..|+..|+..+...
T Consensus 6 le~al~rL~~aid~LE~~v~~r 27 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRR 27 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888765
No 74
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=27.63 E-value=1.6e+02 Score=24.57 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCCCcccccccccccchhhhhhHhHHHHHHHHHHHHHH
Q 038806 42 SPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVE 79 (162)
Q Consensus 42 ~~~~~~~~~~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~ 79 (162)
..+|+.-...+..+.|.-..+.+-+|.-+..||+||..
T Consensus 186 ~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~ 223 (303)
T cd00687 186 PEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKEIK 223 (303)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46777766777888899999999999999999999994
No 75
>PLN02943 aminoacyl-tRNA ligase
Probab=27.59 E-value=2.3e+02 Score=28.81 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=32.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhhHhHHHHHHHHhhhchh
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTAD--MKEKGADPYDLKQQENVLAESRMMIPD 114 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvek--mKaeg~DeydIKkQ~eVLeET~~MIPD 114 (162)
.-+.||-|++.-.++|++..++++.+ +.+ .+.+..+.+.++-+++.+..+..
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~-KAP~evv~~e~~kl~~~~~~l~~ 942 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVE-KAPEDVVRGVREKAAEAEEKIKL 942 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhh-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 44788999998888888888887742 222 23445555555555554444433
No 76
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.69 E-value=2.8e+02 Score=20.82 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=27.1
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhcCC-Cc---hhHHHHHHHHHHHHHHhh
Q 038806 110 MMIPDCRKRLESALAELKAALTELEEENQ-EG---QEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 110 ~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~t---eEl~~Ake~L~~a~~~le 158 (162)
+|..++..|+.+.+.-|++.|.+...... .+ .-+.-|+..+++++=.++
T Consensus 1 ~~~~~l~ekiekYi~~leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Dakyf~e 53 (90)
T COG1849 1 MMAEELAEKIEKYIELLEEALKEIKSRPGDRSAAEDFVDMAESYFEDAKYFLE 53 (90)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777766543222 11 234455555555554443
No 77
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=26.55 E-value=2.4e+02 Score=28.05 Aligned_cols=50 Identities=28% Similarity=0.291 Sum_probs=30.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhhHhHHHHHHHHhh
Q 038806 60 KTSTCKRVVKELHSYEKEVEREAAKTAD--MKEKGADPYDLKQQENVLAESRM 110 (162)
Q Consensus 60 KTgvVKRL~KE~~~Y~kE~~eq~~kvek--mKaeg~DeydIKkQ~eVLeET~~ 110 (162)
...-+.||.|++..+++|++..++++.. +.+ .+.+..+.+.++-+++.+.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~-KAP~~vve~e~~kl~~~~~ 860 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVA-KAPEEVVEKEREKLAEYEE 860 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhh-cCCHHHHHHHHHHHHHHHH
Confidence 3455789999999999999888888742 111 2333444444444444333
No 78
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.47 E-value=4.2e+02 Score=22.78 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=51.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTE 132 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e 132 (162)
.+..|-.++..-++|+.+.+.++-++.++ -+-|.-+.+++.-+=-...+-...+-|-..++.|+..+..
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~Ad-feN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~ 136 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAAD-FDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQ 136 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 34456666777778888878887777775 6667777777777777777888888888888888888764
No 79
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=26.18 E-value=4.6e+02 Score=23.19 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=81.2
Q ss_pred cccCCCceeeEEeeeccccccccceEE-------EEeecCCCCCccccc-------ccccccchhhhhhHhHHHHHHHHH
Q 038806 9 IFNSPSVGTFIVSFQRPHRVGTVNCEV-------LLIRKTSPLPDQKVK-------MATVRNLKIKTSTCKRVVKELHSY 74 (162)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~lrqLkIKTgvVKRL~KE~~~Y 74 (162)
=|..+..-.||+.|++.--+..--|.. -+|-++.-..||.-+ ..+.||=-||.| |-+=..+.
T Consensus 14 df~g~~wi~iIIvFl~~yK~vIllct~yLk~sfLKti~~S~n~hDgs~DvQ~ra~rsnr~~q~g~Kig----led~~t~~ 89 (265)
T PF06409_consen 14 DFGGSPWIIIIIVFLRSYKFVILLCTTYLKVSFLKTIFKSRNGHDGSTDVQQRAWRSNRRRQEGIKIG----LEDLFTLW 89 (265)
T ss_pred CCCCCcceeEEEEeccceeeeeeHHHHhhhHHHhhhhhhccCCCccchHHHHHHHHcccccccccccc----HHHHHHHH
Confidence 355556667899999987776654433 134555666666211 224455556665 22222344
Q ss_pred HHHHHHHHHHHHHHhhc--CCCchhhHhHHHHHHHH-hhhchhHHHHHHHHHHHHHHHHHHHhhcCC-CchhHHHHHHHH
Q 038806 75 EKEVEREAAKTADMKEK--GADPYDLKQQENVLAES-RMMIPDCRKRLESALAELKAALTELEEENQ-EGQEIEDARSTI 150 (162)
Q Consensus 75 ~kE~~eq~~kvekmKae--g~DeydIKkQ~eVLeET-~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~teEl~~Ake~L 150 (162)
+.=...-+++|.+||=. =+.-|.|..+.....+. +.|--.=..+- +=+..|.+.++... +.+|+.-=++.+
T Consensus 90 r~~eakvraei~~mkVt~kvn~h~kI~g~rKtA~~~~rKl~~ke~E~~-----EKErqlSeAeEn~kl~mkei~tY~~~f 164 (265)
T PF06409_consen 90 RHMEAKVRAEIRKMKVTTKVNSHYKINGKRKTAKKHLRKLSMKECEHA-----EKERQLSEAEENGKLAMKEIHTYKQMF 164 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHhhHHHHHHHHHHHHHHH-----HHHhhhhhhhhccchHHHHHHHHHHHH
Confidence 44444667888888855 36778999888877763 22221111121 22444555554444 667777777777
Q ss_pred HHHHHHhhh
Q 038806 151 ADVEKLFQT 159 (162)
Q Consensus 151 ~~a~~~le~ 159 (162)
+.+++....
T Consensus 165 Q~~Qel~~R 173 (265)
T PF06409_consen 165 QRMQELQQR 173 (265)
T ss_pred HHHHHHHHH
Confidence 777766544
No 80
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=26.07 E-value=54 Score=22.10 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=14.6
Q ss_pred ccccccccCCCceeeEEeeecc
Q 038806 4 DARDLIFNSPSVGTFIVSFQRP 25 (162)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (162)
+|..++-+.| .|+|+|-+-..
T Consensus 12 ~Ae~lL~~~~-~G~FLvR~s~~ 32 (84)
T smart00252 12 EAEKLLKNEG-DGDFLVRDSES 32 (84)
T ss_pred HHHHHHhcCC-CcEEEEEcCCC
Confidence 4556666655 99999977543
No 81
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=25.89 E-value=77 Score=29.73 Aligned_cols=36 Identities=36% Similarity=0.602 Sum_probs=25.2
Q ss_pred cccCCC-cee-eEEeeeccccccccceEEEEeecCCCCCcc
Q 038806 9 IFNSPS-VGT-FIVSFQRPHRVGTVNCEVLLIRKTSPLPDQ 47 (162)
Q Consensus 9 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (162)
.|||-- ||. .++-|..-||+| |.|.=..||+|||++
T Consensus 386 FF~~HEVvGSSlLfVhD~~~~ag---vWMIDFgKtsplP~g 423 (458)
T KOG1621|consen 386 FFNSHEVVGSSLLFVHDTEKRAG---VWMIDFGKTSPLPNG 423 (458)
T ss_pred cccccccccceEEEEeecccccc---eEEEeccccccCCCC
Confidence 466543 343 334455666655 999999999999998
No 82
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=25.79 E-value=1.6e+02 Score=22.54 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC---CchhHHHHHHHHH
Q 038806 112 IPDCRKRLESALAELKAALTELEEENQ---EGQEIEDARSTIA 151 (162)
Q Consensus 112 IPD~~~RL~~A~~dL~~~l~e~e~~~~---~teEl~~Ake~L~ 151 (162)
||..-+-+..++..++..+.+...+.. ..++..+.+..++
T Consensus 25 LPelar~lGk~i~~fk~~~~d~k~~i~~E~~~~e~~~~~~~~~ 67 (108)
T PRK14858 25 LPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKAEKLA 67 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466666666666666666665543332 2334444444443
No 83
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.45 E-value=3.1e+02 Score=26.84 Aligned_cols=64 Identities=13% Similarity=0.295 Sum_probs=52.3
Q ss_pred HhhcC-CCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 038806 88 MKEKG-ADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVE 154 (162)
Q Consensus 88 mKaeg-~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teEl~~Ake~L~~a~ 154 (162)
+.+++ +|-|.-++....++....|+--...-+..-+.+|..++...+ .+.+++..+++..+.-+
T Consensus 88 feAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEe---kN~~~i~~~~ely~elr 152 (570)
T COG4477 88 FEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEE---KNSEEIDHVLELYEELR 152 (570)
T ss_pred HHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 44544 899999999999999999999999999999999999887643 37788888887765443
No 84
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=25.45 E-value=4e+02 Score=29.80 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=49.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKEK---GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAAL 130 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKae---g~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l 130 (162)
.+..=.||..+|.++++..-++|..++-+ +--+|.-++.....+|--..-+|+.+|-+--...|+.+.
T Consensus 69 ~~dkEekek~wyy~qlq~l~krld~lQ~d~~r~qle~ea~~ir~~mee~~gt~~dm~~raq~R~~R~~qi~ 139 (2195)
T KOG2122|consen 69 EIDKEEKEKLWYYSQLQGLSKRLDELQMDLIRQQLEFEAQHIRSLMEERFGTSDDMVQRAQIRASRLEQID 139 (2195)
T ss_pred hhhHHHHhhhhHHHHHhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444677889999999999999988754 456788888888888877777777776665555555544
No 85
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=25.07 E-value=2e+02 Score=22.38 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=29.9
Q ss_pred hhchhHHHHHHHHHHHHHH--------HHHHH--hhcCCCchhHHHHHHHHHH
Q 038806 110 MMIPDCRKRLESALAELKA--------ALTEL--EEENQEGQEIEDARSTIAD 152 (162)
Q Consensus 110 ~MIPD~~~RL~~A~~dL~~--------~l~e~--e~~~~~teEl~~Ake~L~~ 152 (162)
.|.|....+|+..++.|.. .+.+. ..+..+..+|..|+.....
T Consensus 6 ~lt~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~ 58 (157)
T PRK00226 6 PMTQEGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGF 58 (157)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHH
Confidence 4678888889888888876 33332 2344566778888887765
No 86
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=25.02 E-value=2.8e+02 Score=20.28 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=38.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHH
Q 038806 59 IKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRL 119 (162)
Q Consensus 59 IKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL 119 (162)
--.+.++-..|.......+.+.-..++.+++..+.++-.+...++-+++++.-.-.+..-+
T Consensus 91 ~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~ 151 (194)
T cd07307 91 KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREEL 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777778888888888777655455555555555555555444443333
No 87
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.96 E-value=3.9e+02 Score=21.96 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=24.3
Q ss_pred hHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806 98 LKQQENVLAESRMMIPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 98 IKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~ 133 (162)
+...++..+|+..++-+...+|.+|-.+-.+++...
T Consensus 88 L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A 123 (205)
T PRK06231 88 INQANELKQQAQQLLENAKQRHENALAQAKEIIDQA 123 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777776666654
No 88
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=24.87 E-value=3.2e+02 Score=21.96 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=9.3
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 038806 139 EGQEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 139 ~teEl~~Ake~L~~a~~~le 158 (162)
...++.+|+..++.++..++
T Consensus 52 s~~~~~~~~~~~~~~~~~~~ 71 (265)
T TIGR00999 52 PRQEFESAEYALEEAQAEVQ 71 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444443
No 89
>PF02335 Cytochrom_C552: Cytochrome c552; InterPro: IPR003321 The enzyme cytochrome c nitrite reductase (c552) catalyses the six-electron reduction of nitrite to ammonia as one of the key steps in the biological nitrogen cycle, where it participates in the anaerobic energy metabolism of dissimilatory nitrate ammonification. Cytochrome c nitrite reductase from Sulfurospirillum deleyianum is a functional dimer, with 10 close-packed haem groups of type c and an unusual lysine-coordinated high-spin haem at the active site [].; GO: 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1QDB_B 3TTB_B 3BNJ_A 3BNG_A 1FS8_A 2E80_A 3BNH_A 1FS7_A 2E81_A 3BNF_A ....
Probab=24.65 E-value=3.7e+02 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCchhHHHHHHHHHHHHHHhh
Q 038806 138 QEGQEIEDARSTIADVEKLFQ 158 (162)
Q Consensus 138 ~~teEl~~Ake~L~~a~~~le 158 (162)
...+++.+|++++..|+=.|.
T Consensus 323 a~~~~l~~a~~~~r~Aq~~wd 343 (434)
T PF02335_consen 323 ATEEELKEARELIRKAQWRWD 343 (434)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhheeEEE
Confidence 456677777777777665543
No 90
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.61 E-value=2.7e+02 Score=20.98 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHhhhhc
Q 038806 116 RKRLESALAELKAALTELEEE-NQEGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 116 ~~RL~~A~~dL~~~l~e~e~~-~~~teEl~~Ake~L~~a~~~le~~~ 161 (162)
.+.+.+...|+.-+......- .+++..+..|+.+++++...+.-|+
T Consensus 61 Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 61 YTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666655543322 3588999999999999999888765
No 91
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=23.93 E-value=2.2e+02 Score=18.65 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=24.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038806 61 TSTCKRVVKELHSYEKEVEREAAKTADMKEK 91 (162)
Q Consensus 61 TgvVKRL~KE~~~Y~kE~~eq~~kvekmKae 91 (162)
...+..+++.+..+..|+...+.+++.+.+.
T Consensus 33 ~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~ 63 (105)
T PF00435_consen 33 LEELEEQLKKHKELQEEIESRQERLESLNEQ 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3568888888888888888888888887753
No 92
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.64 E-value=5.6e+02 Score=23.25 Aligned_cols=98 Identities=7% Similarity=0.162 Sum_probs=54.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH--------HhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTAD--------MKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL 133 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvek--------mKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~ 133 (162)
+-+.||..|...+-.-+..-+..|.. ++.....-..++.+.+...++-.-.-....+|...+...+.-|++.
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555544444444322 1111111223344444455555555556667777777777778776
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHhhh
Q 038806 134 EEENQEGQEIEDARSTIADVEKLFQT 159 (162)
Q Consensus 134 e~~~~~teEl~~Ake~L~~a~~~le~ 159 (162)
+....++.=+..-|++|...+.-+.+
T Consensus 321 g~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 321 GSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 65555666777788888776665544
No 93
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.51 E-value=2.9e+02 Score=21.92 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHH
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAES 108 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET 108 (162)
-+..|+..|+.++.+....|+.|+....|.=+|+++.+-|+..
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAK 66 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3466899999999999999999999888888888887776644
No 94
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.35 E-value=2.4e+02 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=5.7
Q ss_pred cccchhhhhhHhHH
Q 038806 54 VRNLKIKTSTCKRV 67 (162)
Q Consensus 54 lrqLkIKTgvVKRL 67 (162)
+-+|.=|-=.|+.|
T Consensus 60 LTPLQQKEV~iRHL 73 (305)
T PF15290_consen 60 LTPLQQKEVCIRHL 73 (305)
T ss_pred cChHHHHHHHHHHH
Confidence 34444444333333
No 95
>PHA00489 scaffolding protein
Probab=23.30 E-value=1.7e+02 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=31.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038806 59 IKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGAD 94 (162)
Q Consensus 59 IKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~D 94 (162)
=+|.++..|--.+.+++-|..+...-++|+.++..|
T Consensus 24 ErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~D 59 (101)
T PHA00489 24 ERTEALQQLRESYGSFHSEYEELTEALEKLTAEKED 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 478899999999999999999999999999886443
No 96
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.21 E-value=2.8e+02 Score=19.56 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=33.8
Q ss_pred CchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 038806 94 DPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE 135 (162)
Q Consensus 94 DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~ 135 (162)
.+-.+.......++-..++..|..+|..|=.++..++.+.+.
T Consensus 14 gel~Leesl~lyeeG~~L~k~C~~~L~~aE~kI~~l~~e~~~ 55 (69)
T PRK14070 14 EDLPLEESIKLFERGVELYRKCKEILQQNRLKIIDVMKELEG 55 (69)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455677788888999999999999999998888888876443
No 97
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=23.13 E-value=2.2e+02 Score=29.26 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=34.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhhHhHHHHHHHHhhhc
Q 038806 60 KTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMI 112 (162)
Q Consensus 60 KTgvVKRL~KE~~~Y~kE~~eq~~kvekmKa-eg~DeydIKkQ~eVLeET~~MI 112 (162)
...-+.||-||..-+++|+...+.++.+..- .-+.+..+.+..+-+++.+..+
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l 893 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKR 893 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999999876443 2344444444444445444433
No 98
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.04 E-value=6.1e+02 Score=23.51 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=39.0
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 038806 57 LKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKA 128 (162)
Q Consensus 57 LkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~ 128 (162)
-.-..+.++.+.-|+..-+.+....+..+++|+++ +++....+.++..=-..-..||++-++|+-+
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~------~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ------YQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888888888888874 2222223333322223334455555555544
No 99
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=22.55 E-value=2.1e+02 Score=24.31 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHHH
Q 038806 102 ENVLAESRMMIPDCRKRLESALAELKAALTEL-EEENQEGQEIEDARSTIADV 153 (162)
Q Consensus 102 ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~-e~~~~~teEl~~Ake~L~~a 153 (162)
-+|-.|.-.+-..+.+.+++-+.+-+.++... +.++.++.|+.+|+++.+-+
T Consensus 140 ~nvakeay~ltkaaeqnmqklykeq~~~~~~~s~sd~~~s~eikqakeaveia 192 (254)
T PF03207_consen 140 SNVAKEAYSLTKAAEQNMQKLYKEQQKISESESESDYSDSAEIKQAKEAVEIA 192 (254)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHHHH
Confidence 34556666666667777788787777777543 23455888999999988644
No 100
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.27 E-value=4.9e+02 Score=22.09 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHHHHhhhhc
Q 038806 139 EGQEIEDARSTIADVEKLFQTTE 161 (162)
Q Consensus 139 ~teEl~~Ake~L~~a~~~le~~~ 161 (162)
..+.+..+++.++.++..++++.
T Consensus 180 ~Gp~~~~~~~~~~~~~~~l~~l~ 202 (301)
T PF14362_consen 180 KGPRYKEKRAQLDAAQAELDTLQ 202 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888887777666543
No 101
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.21 E-value=3.3e+02 Score=24.11 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 038806 71 LHSYEKEVEREAAKTADMKE 90 (162)
Q Consensus 71 ~~~Y~kE~~eq~~kvekmKa 90 (162)
-..|+.++...++.+.+.++
T Consensus 98 ~~~~~~~l~~a~A~l~~A~a 117 (397)
T PRK15030 98 PATYQATYDSAKGDLAKAQA 117 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655443
No 102
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=22.19 E-value=1.6e+02 Score=24.56 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchh------hHhHHHHHHHHhhh
Q 038806 72 HSYEKEVEREAAKTADMKEKGADPYD------LKQQENVLAESRMM 111 (162)
Q Consensus 72 ~~Y~kE~~eq~~kvekmKaeg~Deyd------IKkQ~eVLeET~~M 111 (162)
..-+-|+++|.+++|++|.+..|..+ |..+++-|+++-+=
T Consensus 37 k~LKa~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~~nRD 82 (186)
T KOG3312|consen 37 KRLKAEVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKNNNRD 82 (186)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhccccc
Confidence 33467899999999999987666532 33445555555443
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.14 E-value=5.9e+02 Score=22.99 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred ccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038806 55 RNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMK 89 (162)
Q Consensus 55 rqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmK 89 (162)
|.|.=|+-++..|.+|+..|+.|-++....++.++
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLq 36 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQ 36 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999998888887776
No 104
>PRK12495 hypothetical protein; Provisional
Probab=22.10 E-value=1.6e+02 Score=25.56 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhhhhcC
Q 038806 117 KRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTEA 162 (162)
Q Consensus 117 ~RL~~A~~dL~~~l~e~e~~~~~teEl~~Ake~L~~a~~~le~~~~ 162 (162)
.-|+.|...|-.-|.-+-.-...+++...|++.|+.++++-+++++
T Consensus 179 ~~~~aAr~sL~~~l~~~a~~a~~tddprrard~L~AarEAAEaL~a 224 (226)
T PRK12495 179 GTLQAARESLVETLARFARRAAATDDPRRAREYLEAAREAAEALDA 224 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHh
Confidence 4466677777666665544455888999999999999888887753
No 105
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.92 E-value=6.7e+02 Score=23.55 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHH-HHHHHHhhhchhHHHHHHHHHH
Q 038806 69 KELHSYEKEVEREAAKTADMKEKGADPYDLKQQE-NVLAESRMMIPDCRKRLESALA 124 (162)
Q Consensus 69 KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~-eVLeET~~MIPD~~~RL~~A~~ 124 (162)
.+...|.+++.+.+.+++.|+.+- ...+.- .=|.++...|-+.+..|..+..
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888887632 333332 3367777777777777777665
No 106
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.90 E-value=3.7e+02 Score=25.33 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhhHhH
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQ 101 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKa-eg~DeydIKkQ 101 (162)
+.++.|.+|...-++.+.-...|+..-.. -+.|+-++.|+
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~ 42 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKS 42 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 56889999999999998888888765443 25777777765
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.55 E-value=5.7e+02 Score=22.63 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=54.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEK--GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQE 139 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKae--g~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~ 139 (162)
..+..++=+..-++.++...-..+.+..++ .-|+-.+++.++-|.+...-|-..++.|...-..|..+-..-+ +.
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~---~~ 244 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE---DL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 334444444555555555554555555543 3677788888888888877777777776665544444332221 14
Q ss_pred chhHHHHHHHHHHHHHHhhh
Q 038806 140 GQEIEDARSTIADVEKLFQT 159 (162)
Q Consensus 140 teEl~~Ake~L~~a~~~le~ 159 (162)
++...+-.+.|.+++..+++
T Consensus 245 ~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 245 TNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555556666666655544
No 108
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.50 E-value=5e+02 Score=21.95 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTE 132 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e 132 (162)
+..|-.+..--++++.+.+.++-++.|+ -+-|.-+-+++.-+-....+....+.|-..+++|+..|..
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~AD-feNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~ 121 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAE-MDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLES 121 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 3344455555666666667777666665 4557777777777767777777777777788888887753
No 109
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.40 E-value=4.1e+02 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038806 63 TCKRVVKELHSYEKEVEREAAKTADMKE 90 (162)
Q Consensus 63 vVKRL~KE~~~Y~kE~~eq~~kvekmKa 90 (162)
+++++.+=..-.++.+.+.-...++.+.
T Consensus 27 ~~~pi~~~l~~R~~~I~~~l~~A~~~~~ 54 (161)
T COG0711 27 VWKPILKALDERQAKIADDLAEAERLKE 54 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444455555444444444443
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.38 E-value=5.7e+02 Score=22.50 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=53.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQ 141 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~te 141 (162)
..+..+.+|...+++|.....+.++.+..+ .-.+.++..-+++-...+-....+.-..+.++.--+..+. +
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e---~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~------~ 113 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKE---REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQ------E 113 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 446677778888888888888888777763 3455555555666555566666666666666665555443 3
Q ss_pred hHHHHHHHHHHHHHHhh
Q 038806 142 EIEDARSTIADVEKLFQ 158 (162)
Q Consensus 142 El~~Ake~L~~a~~~le 158 (162)
+.......+..+...++
T Consensus 114 e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 111
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.30 E-value=3.1e+02 Score=19.52 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 038806 72 HSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTE 132 (162)
Q Consensus 72 ~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e 132 (162)
.+|+.=+...+.=|.+|.+ .+-.|......+++...++-.|+++|..|=.++..++..
T Consensus 10 ~sfEea~~~LEeIv~~LE~---~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 10 LSFEEALAELEEIVTRLES---GDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred CCHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777777777765 355677888889999999999999999998888888764
No 112
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=3.9e+02 Score=25.94 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHH-HhhhchhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 038806 62 STCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAE-SRMMIPDCRKRLESALAELKAALTELEEENQEG 140 (162)
Q Consensus 62 gvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeE-T~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~t 140 (162)
--+.|+++|-.-+..|=....++++.--.=..=.|.+|.|..=-+. ...+-++-+..+..|+.+--+||.++ ..++.
T Consensus 543 EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n--~~a~~ 620 (663)
T KOG0100|consen 543 EDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN--QDASK 620 (663)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc--ccccH
Confidence 3467899988888888777777775433222334777777432211 23456777889999999999999865 34577
Q ss_pred hhHHHHHHHHHHH
Q 038806 141 QEIEDARSTIADV 153 (162)
Q Consensus 141 eEl~~Ake~L~~a 153 (162)
|||.+-+.-|+.+
T Consensus 621 Ee~~ek~kele~v 633 (663)
T KOG0100|consen 621 EEFKEKKKELEAV 633 (663)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766643
No 113
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.20 E-value=4.7e+02 Score=27.46 Aligned_cols=128 Identities=21% Similarity=0.305 Sum_probs=64.6
Q ss_pred cccceEEEEeecCCCCCccc-----ccccccccchhhhhhHhHHHHHH--HHHHHHHHHHHHHHHHHhhc-C----CCch
Q 038806 29 GTVNCEVLLIRKTSPLPDQK-----VKMATVRNLKIKTSTCKRVVKEL--HSYEKEVEREAAKTADMKEK-G----ADPY 96 (162)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-----~~~~~lrqLkIKTgvVKRL~KE~--~~Y~kE~~eq~~kvekmKae-g----~Dey 96 (162)
.|-+|...+|++++.= =++ .=..+.+.|+-|.-+=+-|.|.. .-|-.|++.....|-.++.. | .+-|
T Consensus 358 kTKT~iIATiSPa~~~-lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y 436 (1041)
T KOG0243|consen 358 KTKTCIIATISPAKHN-LEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERY 436 (1041)
T ss_pred CceeEEEEEeCCCccc-HHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHH
Confidence 4678888877765430 000 11346777787777776776664 23556666666666555542 2 3334
Q ss_pred -----hhHhHHHHHH-----------------HHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHH
Q 038806 97 -----DLKQQENVLA-----------------ESRMMIPDCRKRLESALAELKAALTELEEENQ-EGQEIEDARSTIADV 153 (162)
Q Consensus 97 -----dIKkQ~eVLe-----------------ET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~teEl~~Ake~L~~a 153 (162)
..+...+.++ |..+=.-....-|.+-...|+.-|.....++. -.+++.+++..|...
T Consensus 437 ~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 437 TQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333 33322223333334444444444444333333 335777777776554
Q ss_pred HHHh
Q 038806 154 EKLF 157 (162)
Q Consensus 154 ~~~l 157 (162)
...+
T Consensus 517 e~ii 520 (1041)
T KOG0243|consen 517 EEII 520 (1041)
T ss_pred HHHH
Confidence 4433
No 114
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.18 E-value=3.6e+02 Score=21.43 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=32.4
Q ss_pred hhchhHHHHHHHHHHHHHHH-------HHHH--hhcCCCchhHHHHHHHHHHHHHHhhh
Q 038806 110 MMIPDCRKRLESALAELKAA-------LTEL--EEENQEGQEIEDARSTIADVEKLFQT 159 (162)
Q Consensus 110 ~MIPD~~~RL~~A~~dL~~~-------l~e~--e~~~~~teEl~~Ake~L~~a~~~le~ 159 (162)
-|=|....+|+.-+..|+.- +.+. ..|+.+..||.+|++-+...+.-+..
T Consensus 7 ~lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~ 65 (158)
T PRK05892 7 GLAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINE 65 (158)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 46677777777777777642 1111 13566788999999987666554443
No 115
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.08 E-value=1.3e+02 Score=21.07 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred cccccceEEEEeecCCCCCcccccccccccchhhhhhHhHHHHHHHHHHHHHHH
Q 038806 27 RVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVER 80 (162)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~e 80 (162)
+||..+|..+.+.-.=-||++.+...++ ..+|+.+|+..|..-+..
T Consensus 9 ~VG~itl~ys~~~~GWl~Pgg~vi~NPl--------kAqR~AE~~n~~~~~l~~ 54 (60)
T PF07026_consen 9 RVGTITLPYSHFKNGWLMPGGKVITNPL--------KAQRLAEELNSKQVNLCD 54 (60)
T ss_pred EEeEEEEEEEeccceeecCCCeeEcCHH--------HHHHHHHHHHhhHhhhhh
Confidence 5777777666555555668885555444 357889999888876654
No 116
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=20.91 E-value=1.9e+02 Score=20.70 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 038806 120 ESALAELKAALTELEEENQEGQEIEDARSTI 150 (162)
Q Consensus 120 ~~A~~dL~~~l~e~e~~~~~teEl~~Ake~L 150 (162)
.+++..+.+.+....+..-..+|++.|++.|
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3344444444443322334778999999876
No 117
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.85 E-value=5e+02 Score=21.67 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhcCC-CchhHH
Q 038806 66 RVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQ-EGQEIE 144 (162)
Q Consensus 66 RL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~-~teEl~ 144 (162)
..+.|...|+..+-.|-+.. -+..-.+.++|=..-+-|++++..++-.++...|.-+-.-.. -..++.
T Consensus 68 ~~l~ei~~~~~~L~~q~~~~-----------l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~e 136 (200)
T cd07638 68 DTLQEMINYHTILFDQAQRS-----------IKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVE 136 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHH
Confidence 34668888888887766554 334556667777777888999999999988888875532222 345888
Q ss_pred HHHHHHHHHHHHhhh
Q 038806 145 DARSTIADVEKLFQT 159 (162)
Q Consensus 145 ~Ake~L~~a~~~le~ 159 (162)
+|.+.|..++..+.+
T Consensus 137 Ea~~~l~~~r~~F~~ 151 (200)
T cd07638 137 EATNILTATRKCFRH 151 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777765543
No 118
>PRK13410 molecular chaperone DnaK; Provisional
Probab=20.81 E-value=7.8e+02 Score=23.91 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHH-----hhhchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 038806 64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAES-----RMMIPDCRKRLESALAELKAALTELEEENQ 138 (162)
Q Consensus 64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET-----~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~ 138 (162)
++++.++...+..+-.....++++.- +-+--|-..+..|.|. .-+-|+-+.+|...+.+++++|.+.
T Consensus 507 i~~~~~~~~~~~~~d~~~~~~~e~kn---~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~----- 578 (668)
T PRK13410 507 VNRMIQEAEAKADEDRRRRERIEKRN---RALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD----- 578 (668)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-----
Confidence 56666666655544433333333222 1222233334444442 3346788889999999999999632
Q ss_pred CchhHHHHHHHHH
Q 038806 139 EGQEIEDARSTIA 151 (162)
Q Consensus 139 ~teEl~~Ake~L~ 151 (162)
+.+++..+...|.
T Consensus 579 ~~~~~~~~~~~~~ 591 (668)
T PRK13410 579 DDRELDLAVADLQ 591 (668)
T ss_pred CHHHHHHHHHHHH
Confidence 3345555544443
No 119
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=20.28 E-value=3.9e+02 Score=23.44 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 038806 73 SYEKEVEREAAKTADM 88 (162)
Q Consensus 73 ~Y~kE~~eq~~kvekm 88 (162)
.|+-++...++.++..
T Consensus 96 ~~~~~l~~a~a~l~~a 111 (385)
T PRK09859 96 PLQAELNSAKGSLAKA 111 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666665543
Done!