BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038808
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana
GN=At3g14460 PE=3 SV=1
Length = 1424
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 30 EPVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSI---------------TK 74
E + T +Y L++LF+ SC +L F P+ P L S+SI
Sbjct: 1156 ESLQPTRSYSQLEYLFIGSSCSNLVNF---PLSLFPKLRSLSIRDCESFKTFSIHAGLGD 1212
Query: 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFI 134
D ++L L+I+ CP + +FP+ GLP TP L ++ + K L+ +P L+ L LFI
Sbjct: 1213 DRIALESLEIRDCPNLETFPQGGLP--TPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFI 1270
Query: 135 QECPKLVSTPGS-FPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIEDG 185
+CP++ + PG FP LR L I C K PR +W L LENLR+L I+ G
Sbjct: 1271 IKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIEWGLRDLENLRNL-EIDGG 1321
>sp|Q504N2|S22AF_MOUSE Solute carrier family 22 member 15 OS=Mus musculus GN=Slc22a15 PE=2
SV=2
Length = 544
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 70 VSITKDHMSL-AILDIKQCPKIVSFPERG--------LPLATPNLKLFVILDWKILEVIP 120
V + MSL A + + +C + G + +A L + I W+ L V+
Sbjct: 172 VGMMNGGMSLVAFVLLNECVGTTYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAVLV 231
Query: 121 NLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVS 158
NL+ +L FL LFI E P+ + + G E L ++
Sbjct: 232 NLQGTLVFLLSLFIPESPRWLYSQGRLSEAEEALYFIA 269
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum
GN=RGA4 PE=2 SV=1
Length = 988
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 78 SLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137
+L L I+ C + SFPE+GL T +LFV K+L+ +P L+ LT L + C
Sbjct: 903 ALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKY-CKMLKCLPEGLQHLTALTNLGVSGC 961
Query: 138 PKL 140
P++
Sbjct: 962 PEV 964
>sp|Q8IZD6|S22AF_HUMAN Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2
SV=1
Length = 547
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 70 VSITKDHMSL-AILDIKQCPKIVSFPERG--------LPLATPNLKLFVILDWKILEVIP 120
V + MSL A + + +C + G + +A L + I W+ L ++
Sbjct: 172 VGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILV 231
Query: 121 NLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVS 158
NL+ ++ FL LFI E P+ + + G E L +++
Sbjct: 232 NLQGTVVFLLSLFIPESPRWLYSQGRLSEAEEALYLIA 269
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum
GN=RGA3 PE=2 SV=2
Length = 992
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 78 SLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137
+L LDI+ C + S PE GL + +LFV +L+ +P L+ LT L I+ C
Sbjct: 906 NLKCLDIRYCYALESLPEEGLEGLSSLTELFVE-HCNMLKCLPEGLQHLTTLTSLKIRGC 964
Query: 138 PKLV 141
P+L+
Sbjct: 965 PQLI 968
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana
GN=WRKY16 PE=2 SV=1
Length = 1372
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 67 LDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSL 126
L S T + L ++++ C +I SFPE + T NL+ I++ + V PN R L
Sbjct: 628 LQSFPATGQLLHLRVVNLSGCTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELL 687
Query: 127 SFLTEL 132
+ L E+
Sbjct: 688 NLLAEI 693
>sp|Q1X881|POLG_YEFVN Genome polyprotein OS=Yellow fever virus (isolate Angola/14FA/1971)
PE=3 SV=1
Length = 3412
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + VIP L
Sbjct: 2315 IKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVIPLL 2367
>sp|Q074N0|POLG_YEFVE Genome polyprotein OS=Yellow fever virus (isolate
Ethiopia/Couma/1961) PE=3 SV=1
Length = 3412
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + VIP L
Sbjct: 2315 IKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVIPLL 2367
>sp|Q1X880|POLG_YEFVU Genome polyprotein OS=Yellow fever virus (isolate
Uganda/A7094A4/1948) PE=3 SV=1
Length = 3412
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + VIP L
Sbjct: 2315 IKVEYGNLSLSGIAQSASVLSFMDKGVPFMKMNISVVILLVSGWNSITVIPLL 2367
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana
GN=SNC1 PE=1 SV=3
Length = 1301
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 52 SLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL 111
+L+ ++ + + L+ + I + SL ILD+ C + +F PL + N+ +++ L
Sbjct: 975 NLQKLVSFEMKECTGLEVLPIDVNLSSLMILDLSGCSSLRTF-----PLISTNI-VWLYL 1028
Query: 112 DWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFP-ETLRKLSIVSCHKFR 163
+ +E IP+ +L L +L ++EC L P +L L + C R
Sbjct: 1029 ENTAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTDVNLSSLMILDLSGCSSLR 1081
>sp|E3QLU5|RTC5_COLGM Restriction of telomere capping protein 5 OS=Colletotrichum
graminicola (strain M1.001 / M2 / FGSC 10212) GN=RTC5
PE=3 SV=1
Length = 605
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 51 DSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKI-VSFPERGLPLATPNL 105
+ L M+ TR LDS+ T +H+ A L++++ P I S R LP+ PNL
Sbjct: 232 ERLSMYSTRV--TGDELDSLRATAEHILAAFLNVEKAPGIKFSQYNRVLPVCFPNL 285
>sp|Q98803|POLG_YEFVI Genome polyprotein OS=Yellow fever virus (isolate Ivory
Coast/85-82H/1982) PE=3 SV=1
Length = 3411
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + V+P L
Sbjct: 2314 IKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVIILLVSGWNSITVMPLL 2366
>sp|Q6J3P1|POLG_YEFVC Genome polyprotein OS=Yellow fever virus (isolate Ivory Coast/1999)
PE=3 SV=1
Length = 3411
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + V+P L
Sbjct: 2314 IKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVIILLVSGWNSITVMPLL 2366
>sp|Q6DV88|POLG_YEFVA Genome polyprotein OS=Yellow fever virus (strain Ghana/Asibi/1927)
PE=1 SV=1
Length = 3411
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 72 ITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL--DWKILEVIPNL 122
I ++ +L++ I Q ++SF ++G+P N+ + ++L W + V+P L
Sbjct: 2314 IKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVIILLVSGWNSITVMPLL 2366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,435,370
Number of Sequences: 539616
Number of extensions: 2514998
Number of successful extensions: 6032
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6012
Number of HSP's gapped (non-prelim): 37
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)