Query 038808
Match_columns 185
No_of_seqs 275 out of 1543
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.4 4.6E-12 9.9E-17 119.4 11.3 128 35-165 653-841 (1153)
2 PLN03210 Resistant to P. syrin 99.3 6.6E-12 1.4E-16 118.3 11.3 78 37-120 632-721 (1153)
3 PLN00113 leucine-rich repeat r 99.3 2E-11 4.4E-16 113.1 8.9 139 35-179 89-241 (968)
4 PLN00113 leucine-rich repeat r 99.2 8.9E-11 1.9E-15 108.9 9.4 96 35-137 114-222 (968)
5 KOG4194 Membrane glycoprotein 99.0 7.6E-11 1.6E-15 101.6 -0.8 143 34-184 240-425 (873)
6 KOG4194 Membrane glycoprotein 98.9 1.9E-10 4E-15 99.2 1.1 138 35-179 193-346 (873)
7 KOG0617 Ras suppressor protein 98.8 1.6E-10 3.4E-15 86.3 -3.9 137 38-184 32-182 (264)
8 KOG0617 Ras suppressor protein 98.8 2.2E-10 4.9E-15 85.5 -4.0 124 36-167 53-190 (264)
9 PRK15386 type III secretion pr 98.7 3.4E-08 7.4E-13 83.2 7.2 107 37-158 50-186 (426)
10 PRK15370 E3 ubiquitin-protein 98.6 5.3E-08 1.1E-12 88.2 6.5 51 127-183 325-375 (754)
11 KOG0472 Leucine-rich repeat pr 98.6 3.4E-09 7.3E-14 88.1 -1.4 101 76-184 434-537 (565)
12 PRK15370 E3 ubiquitin-protein 98.6 8.9E-08 1.9E-12 86.7 7.2 93 39-145 199-300 (754)
13 KOG0444 Cytoskeletal regulator 98.6 1.7E-09 3.6E-14 94.4 -4.3 102 30-137 141-255 (1255)
14 KOG0618 Serine/threonine phosp 98.5 5.3E-09 1.1E-13 94.1 -2.6 140 36-184 307-485 (1081)
15 KOG0444 Cytoskeletal regulator 98.5 1.8E-09 3.8E-14 94.3 -5.8 140 36-183 170-347 (1255)
16 PRK15387 E3 ubiquitin-protein 98.5 4.5E-07 9.7E-12 82.3 8.9 16 104-120 303-318 (788)
17 PRK15387 E3 ubiquitin-protein 98.4 6E-07 1.3E-11 81.5 7.2 131 38-184 301-454 (788)
18 PRK15386 type III secretion pr 98.4 4.4E-07 9.4E-12 76.6 5.9 39 78-120 73-111 (426)
19 PF13855 LRR_8: Leucine rich r 98.4 9.7E-07 2.1E-11 54.7 4.9 57 78-137 2-59 (61)
20 KOG0472 Leucine-rich repeat pr 98.3 5.4E-09 1.2E-13 86.9 -7.5 100 75-184 204-306 (565)
21 PF13855 LRR_8: Leucine rich r 98.3 2E-06 4.3E-11 53.3 5.1 60 39-114 1-60 (61)
22 PF14580 LRR_9: Leucine-rich r 98.2 9.1E-07 2E-11 66.7 2.3 18 38-57 18-35 (175)
23 KOG0618 Serine/threonine phosp 98.1 2.5E-07 5.5E-12 83.6 -2.2 99 33-139 377-488 (1081)
24 KOG4658 Apoptotic ATPase [Sign 98.1 2.2E-06 4.7E-11 79.1 2.8 103 75-182 569-675 (889)
25 KOG4237 Extracellular matrix p 98.0 2.6E-07 5.5E-12 76.8 -3.6 39 30-70 82-120 (498)
26 KOG4237 Extracellular matrix p 98.0 4.2E-07 9.1E-12 75.6 -2.9 103 38-145 66-181 (498)
27 KOG0532 Leucine-rich repeat (L 97.9 2E-07 4.3E-12 80.6 -6.4 137 37-184 96-243 (722)
28 KOG3207 Beta-tubulin folding c 97.9 3.6E-06 7.8E-11 70.8 0.4 142 36-183 118-309 (505)
29 PF14580 LRR_9: Leucine-rich r 97.8 2E-05 4.4E-10 59.4 4.0 108 65-179 19-145 (175)
30 KOG3207 Beta-tubulin folding c 97.8 7.1E-07 1.5E-11 74.9 -4.4 97 75-179 220-331 (505)
31 cd00116 LRR_RI Leucine-rich re 97.7 4.4E-06 9.5E-11 67.7 -1.2 15 123-137 217-231 (319)
32 PLN03150 hypothetical protein; 97.7 9.4E-05 2E-09 66.2 6.8 105 41-162 420-528 (623)
33 cd00116 LRR_RI Leucine-rich re 97.7 1E-05 2.2E-10 65.6 0.5 54 104-160 166-232 (319)
34 KOG2120 SCF ubiquitin ligase, 97.6 1.7E-06 3.6E-11 69.9 -5.3 118 65-184 234-372 (419)
35 PF12799 LRR_4: Leucine Rich r 97.6 0.0001 2.2E-09 42.7 3.3 40 103-144 1-40 (44)
36 COG4886 Leucine-rich repeat (L 97.5 5.4E-05 1.2E-09 63.7 2.4 31 150-184 256-286 (394)
37 KOG1259 Nischarin, modulator o 97.4 4E-05 8.7E-10 62.3 0.7 62 76-143 283-344 (490)
38 KOG4658 Apoptotic ATPase [Sign 97.4 0.00017 3.7E-09 66.8 4.0 129 35-183 519-650 (889)
39 PLN03150 hypothetical protein; 97.3 0.00042 9E-09 62.1 6.0 86 79-167 420-508 (623)
40 COG4886 Leucine-rich repeat (L 97.3 0.00014 3E-09 61.2 2.7 135 38-183 115-263 (394)
41 KOG2120 SCF ubiquitin ligase, 97.3 8.4E-06 1.8E-10 66.0 -4.5 59 75-137 311-373 (419)
42 KOG0532 Leucine-rich repeat (L 97.3 7E-05 1.5E-09 65.2 0.2 111 40-159 144-270 (722)
43 KOG3665 ZYG-1-like serine/thre 97.2 0.00014 3.1E-09 65.7 1.5 113 39-158 122-259 (699)
44 KOG1259 Nischarin, modulator o 97.2 7.5E-05 1.6E-09 60.7 -0.4 93 37-137 282-384 (490)
45 PF13306 LRR_5: Leucine rich r 97.1 0.0047 1E-07 43.2 8.3 123 31-177 4-129 (129)
46 KOG4341 F-box protein containi 97.0 0.00016 3.5E-09 60.8 0.0 141 37-179 292-457 (483)
47 KOG1947 Leucine rich repeat pr 96.8 5.1E-05 1.1E-09 64.7 -4.5 103 37-140 186-308 (482)
48 PF12799 LRR_4: Leucine Rich r 96.6 0.0018 4E-08 37.4 2.3 34 39-87 1-34 (44)
49 KOG4341 F-box protein containi 96.6 0.0004 8.7E-09 58.5 -0.8 107 75-183 292-434 (483)
50 KOG3665 ZYG-1-like serine/thre 96.4 0.00072 1.6E-08 61.2 -0.1 113 65-184 122-259 (699)
51 KOG1644 U2-associated snRNP A' 96.0 0.017 3.7E-07 44.5 5.2 31 40-74 43-73 (233)
52 KOG1859 Leucine-rich repeat pr 95.8 0.00026 5.7E-09 63.5 -6.0 91 64-160 186-290 (1096)
53 KOG3864 Uncharacterized conser 95.5 0.0022 4.7E-08 49.3 -1.3 16 126-141 150-165 (221)
54 KOG3864 Uncharacterized conser 95.4 0.00078 1.7E-08 51.7 -3.9 65 77-141 125-190 (221)
55 KOG2739 Leucine-rich acidic nu 95.3 0.008 1.7E-07 47.7 1.3 47 36-86 40-100 (260)
56 KOG2123 Uncharacterized conser 95.3 0.00026 5.7E-09 57.0 -7.1 18 123-140 84-101 (388)
57 KOG2982 Uncharacterized conser 95.2 0.023 5E-07 46.5 3.7 49 36-87 94-156 (418)
58 KOG0531 Protein phosphatase 1, 95.1 0.0048 1E-07 52.5 -0.5 95 35-137 91-196 (414)
59 PF13306 LRR_5: Leucine rich r 95.1 0.091 2E-06 36.6 6.2 85 30-135 26-111 (129)
60 PF00560 LRR_1: Leucine Rich R 95.0 0.018 3.9E-07 27.9 1.6 21 40-63 1-21 (22)
61 KOG1947 Leucine rich repeat pr 95.0 0.0032 7E-08 53.6 -2.0 101 36-137 211-331 (482)
62 KOG2739 Leucine-rich acidic nu 94.7 0.019 4.1E-07 45.7 1.9 76 102-179 64-148 (260)
63 PF00560 LRR_1: Leucine Rich R 94.7 0.021 4.6E-07 27.7 1.4 17 105-122 2-18 (22)
64 PF13504 LRR_7: Leucine rich r 94.4 0.034 7.3E-07 25.3 1.6 17 39-57 1-17 (17)
65 KOG1859 Leucine-rich repeat pr 94.1 0.0061 1.3E-07 55.1 -2.3 74 103-183 187-262 (1096)
66 KOG0531 Protein phosphatase 1, 92.8 0.076 1.6E-06 45.2 2.4 98 75-184 93-195 (414)
67 smart00369 LRR_TYP Leucine-ric 91.6 0.11 2.5E-06 25.9 1.3 23 38-62 1-23 (26)
68 smart00370 LRR Leucine-rich re 91.6 0.11 2.5E-06 25.9 1.3 23 38-62 1-23 (26)
69 KOG1644 U2-associated snRNP A' 90.5 0.48 1E-05 36.7 4.3 88 33-137 58-150 (233)
70 KOG2123 Uncharacterized conser 90.3 0.025 5.4E-07 45.9 -3.0 51 36-90 38-101 (388)
71 smart00367 LRR_CC Leucine-rich 89.8 0.19 4E-06 25.2 1.1 16 39-55 2-17 (26)
72 KOG1909 Ran GTPase-activating 89.3 0.043 9.2E-07 45.5 -2.4 15 123-137 209-223 (382)
73 KOG4579 Leucine-rich repeat (L 86.7 0.13 2.8E-06 37.7 -1.0 58 77-137 53-110 (177)
74 KOG4579 Leucine-rich repeat (L 83.8 0.064 1.4E-06 39.2 -3.7 89 38-145 52-140 (177)
75 smart00364 LRR_BAC Leucine-ric 79.6 1.2 2.5E-05 22.7 1.1 18 39-58 2-19 (26)
76 KOG2982 Uncharacterized conser 74.1 2 4.3E-05 35.5 1.6 69 65-137 71-156 (418)
77 KOG1909 Ran GTPase-activating 71.4 1.8 4E-05 36.1 0.9 99 36-137 182-308 (382)
78 COG5238 RNA1 Ran GTPase-activa 59.3 9.5 0.00021 31.3 2.8 140 38-183 29-222 (388)
79 PF13516 LRR_6: Leucine Rich r 56.9 8.3 0.00018 18.4 1.4 11 127-137 2-12 (24)
80 PF05725 FNIP: FNIP Repeat; I 50.5 31 0.00066 19.3 3.3 11 146-156 31-41 (44)
81 smart00365 LRR_SD22 Leucine-ri 44.2 19 0.0004 18.1 1.5 16 39-56 2-17 (26)
82 smart00368 LRR_RI Leucine rich 26.4 48 0.001 16.5 1.3 11 127-137 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=4.6e-12 Score=119.41 Aligned_cols=128 Identities=25% Similarity=0.448 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCC------
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERG------ 97 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~------ 97 (185)
...+++|+.|++.+ |..+..+|. .+.++++|+.|++++ .+++|+.|++++|..++.+|...
T Consensus 653 ls~l~~Le~L~L~~-c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L 730 (1153)
T PLN03210 653 LSMATNLETLKLSD-CSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWL 730 (1153)
T ss_pred cccCCcccEEEecC-CCCccccch-hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCee
Confidence 34456666666666 666666665 455566666666654 35566666666665444332100
Q ss_pred ---------CCC---------------------------------CCCCccEEEeecCcCCccccccCCCCCCCCEEeec
Q 038808 98 ---------LPL---------------------------------ATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQ 135 (185)
Q Consensus 98 ---------~~~---------------------------------~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~ 135 (185)
++. ..++|+.|++++|+.+..+|..++++++|+.|++.
T Consensus 731 ~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 731 DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred ecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 000 01356667777777777778778888888888888
Q ss_pred CCCCCccCCC--ccccCCceeeeecCCCCCCC
Q 038808 136 ECPKLVSTPG--SFPETLRKLSIVSCHKFRPR 165 (185)
Q Consensus 136 ~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~ 165 (185)
+|+.++.+|. .++ +|+.|++.+|..+..+
T Consensus 811 ~C~~L~~LP~~~~L~-sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 811 NCINLETLPTGINLE-SLESLDLSGCSRLRTF 841 (1153)
T ss_pred CCCCcCeeCCCCCcc-ccCEEECCCCCccccc
Confidence 8888888887 344 7888888887766544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=6.6e-12 Score=118.34 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=46.5
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
.+++|+.|++++ |.+++.+|. +..+++|++|++++ .+++|+.|++++|..++.+|.+. . +++
T Consensus 632 ~l~~Lk~L~Ls~-~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~--l~s 705 (1153)
T PLN03210 632 SLTGLRNIDLRG-SKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N--LKS 705 (1153)
T ss_pred cCCCCCEEECCC-CCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C--CCC
Confidence 456666666666 555665654 55556666666654 45666666776666666666543 1 346
Q ss_pred ccEEEeecCcCCcccc
Q 038808 105 LKLFVILDWKILEVIP 120 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp 120 (185)
|+.|++++|..++.+|
T Consensus 706 L~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCEEeCCCCCCccccc
Confidence 6666666665544433
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=2e-11 Score=113.11 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=76.5
Q ss_pred CCCCCCCCEEEEcccccccc-ccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLK-MFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~-~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
+..+++|+.|++++ +++. .+|.+.+..+++|++|++++ .+++|++|++++|.-...+|..... ++
T Consensus 89 ~~~l~~L~~L~Ls~--n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~--l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSN--NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS--FS 164 (968)
T ss_pred HhCCCCCCEEECCC--CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc--CC
Confidence 45688888999888 4565 57776666777888888765 4667777777765433334432111 34
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
+|+.|++++|.-...+|..++++++|++|++++|.....+|. .++ +|+.|++.++.-...+|. .+.++++|++|
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 241 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPY-EIGGLTSLNHL 241 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCCh-hHhcCCCCCEE
Confidence 666666666544445555555666666666655533333333 122 445555444332222222 34444444444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=8.9e-11 Score=108.87 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=49.4
Q ss_pred CCCCCCCCEEEEcccccccc-ccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLK-MFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~-~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
+..+++|++|++++ | +++ .+|. ..+++|++|++++ .+++|++|++++|.....+|.....
T Consensus 114 ~~~l~~L~~L~Ls~-n-~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-- 186 (968)
T PLN00113 114 FTTSSSLRYLNLSN-N-NFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-- 186 (968)
T ss_pred hccCCCCCEEECcC-C-ccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh--
Confidence 33567777777777 3 443 3443 2345556666654 4556666666655433333332111
Q ss_pred CCCccEEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 102 TPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
+++|++|++.+|.-...+|..++.+++|++|++++|
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 335555555554433444555555555555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=7.6e-11 Score=101.61 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
+|..+++|+.|.+.+ |++..+..|.|-.+.++++|++.. ++++|+.|++++ +.+..+...... +
T Consensus 240 tFqgL~Sl~nlklqr--N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws-f 315 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQR--NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS-F 315 (873)
T ss_pred hhcCchhhhhhhhhh--cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecchhh-h
Confidence 456677777777776 677777776676666667776654 556666666655 345444332221 2
Q ss_pred CCCccEEEeecCcCCccccc------------------------c-CCCCCCCCEEeecCCCCCccCCC------ccccC
Q 038808 102 TPNLKLFVILDWKILEVIPN------------------------L-RHSLSFLTELFIQECPKLVSTPG------SFPET 150 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~------------------------~-~~~l~~L~~L~l~~c~~L~~lp~------~l~~~ 150 (185)
+++|++|+++. +++.++++ + +..+.+|+.|+++++.---.+.+ |+| +
T Consensus 316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-S 393 (873)
T ss_pred cccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch-h
Confidence 34566666644 23333332 1 23456666666666522111111 556 8
Q ss_pred CceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 151 LRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 151 L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
|++|.+.| ++++.++..+|.++.+|++| ++.+
T Consensus 394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~L-dL~~ 425 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRAFSGLEALEHL-DLGD 425 (873)
T ss_pred hhheeecC-ceeeecchhhhccCccccee-cCCC
Confidence 88888877 57888888888888888888 7754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=1.9e-10 Score=99.24 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=76.4
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
|..+.+|..|.+++ |.++.+|+..|.++++|+.|++.. ++++|+.|.+.. +.+..+.+|.|- .+
T Consensus 193 F~~lnsL~tlkLsr--NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy-~l 268 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSR--NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFY-GL 268 (873)
T ss_pred ccccchheeeeccc--CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh-cCcccccCccee-ee
Confidence 44555666666666 666666666666666666666654 556666666654 345555555443 35
Q ss_pred CCccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCcccc
Q 038808 103 PNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRS 178 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~ 178 (185)
.+++.|++.. +++..+.+ ++.++++|+.|+++++ .++.|.. .+..+|+.|++++ +.+..+++..|..|..|++
T Consensus 269 ~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 269 EKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred cccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhh
Confidence 5666666654 34444433 3556666666666665 5554443 2222566666543 3455555444555555555
Q ss_pred c
Q 038808 179 L 179 (185)
Q Consensus 179 L 179 (185)
|
T Consensus 346 L 346 (873)
T KOG4194|consen 346 L 346 (873)
T ss_pred h
Confidence 4
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.80 E-value=1.6e-10 Score=86.31 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=70.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
+.+.++|.++. ++++.+|+ .+..+.||+.|++++ .++.|+.|++. .+.+..+|.+... ++.|+
T Consensus 32 ~s~ITrLtLSH--NKl~~vpp-nia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs--~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSH--NKLTVVPP-NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGS--FPALE 105 (264)
T ss_pred hhhhhhhhccc--CceeecCC-cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccccCC--Cchhh
Confidence 45677778887 78887777 456665555555554 44555555543 2344444443222 33555
Q ss_pred EEEeecCcCC-ccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 107 LFVILDWKIL-EVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 107 ~L~l~~c~~L-~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
.|++...+-- .++|..+..++.|+.|++.++ ..+-+|+ |-..+|+.|.+++ +++-.+|. .++.++.|++| .|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd-ndll~lpk-eig~lt~lrel-hiq 181 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD-NDLLSLPK-EIGDLTRLREL-HIQ 181 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc-CchhhCcH-HHHHHHHHHHH-hcc
Confidence 5555432211 234444444455555555444 3344444 2222555555544 34444554 45666666666 555
Q ss_pred C
Q 038808 184 D 184 (185)
Q Consensus 184 ~ 184 (185)
|
T Consensus 182 g 182 (264)
T KOG0617|consen 182 G 182 (264)
T ss_pred c
Confidence 4
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.76 E-value=2.2e-10 Score=85.52 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=98.8
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCC-cccCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKI-VSFPERGLPLATP 103 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l-~~l~~~~~~~~~~ 103 (185)
..+.+|+.|++++ +.++.+|. .++++++|+.|+++- .+|.|+.|++.+.+-- .++|...|- ++
T Consensus 53 a~l~nlevln~~n--nqie~lp~-~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~--m~ 127 (264)
T KOG0617|consen 53 AELKNLEVLNLSN--NQIEELPT-SISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--MT 127 (264)
T ss_pred HHhhhhhhhhccc--chhhhcCh-hhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH--HH
Confidence 4578899999998 89999998 788899999998875 7899999999875432 355655554 56
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCch
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRD 167 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~ 167 (185)
.|+-|++.+ +.++.+|..++.+++|+.|.+.++ .+-++|. +-...|++|+|.+ +.+..+|+
T Consensus 128 tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 128 TLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred HHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 788888877 568899999999999999999998 6667887 4334899999987 45666665
No 9
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=3.4e-08 Score=83.19 Aligned_cols=107 Identities=22% Similarity=0.456 Sum_probs=62.9
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
.++++++|++++ | +++.+|. +| .+|++|.+++ -.++|++|++++|..+..+|. +|+
T Consensus 50 ~~~~l~~L~Is~-c-~L~sLP~--LP--~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~--------sLe 115 (426)
T PRK15386 50 EARASGRLYIKD-C-DIESLPV--LP--NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE--------SVR 115 (426)
T ss_pred HhcCCCEEEeCC-C-CCcccCC--CC--CCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc--------ccc
Confidence 357899999999 7 8888884 55 3466666655 124677777777766655442 455
Q ss_pred EEEeec--CcCCccccccCCCC------------------CCCCEEeecCCCCCccCCCccccCCceeeeec
Q 038808 107 LFVILD--WKILEVIPNLRHSL------------------SFLTELFIQECPKLVSTPGSFPETLRKLSIVS 158 (185)
Q Consensus 107 ~L~l~~--c~~L~~lp~~~~~l------------------~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~ 158 (185)
.|.+.. |..+..+|.++..| ++|++|.+.+|..+ .+|+++|.+|+.|++..
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccccccCcEEEecc
Confidence 555532 22345555443222 25666666666433 23435555666666644
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=5.3e-08 Score=88.16 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 127 SFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 127 ~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
++|+.|++++| .+..+|..+|.+|+.|++.+| ++..+|.. + .++|++| +++
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~L-dLs 375 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLPASLPPELQVLDVSKN-QITVLPET-L--PPTITTL-DVS 375 (754)
T ss_pred ccceeccccCC-ccccCChhhcCcccEEECCCC-CCCcCChh-h--cCCcCEE-ECC
Confidence 34555555555 444455433346666666554 34444432 2 2455666 554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=3.4e-09 Score=88.10 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC-cc--ccCCc
Q 038808 76 HMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG-SF--PETLR 152 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~l--~~~L~ 152 (185)
+++|..|++++ +.+.++|...+. +-.|+.|+++.. .++.+|.....+..++.+-.+++ .+.+++. ++ ..+|.
T Consensus 434 l~kLt~L~L~N-N~Ln~LP~e~~~--lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 434 LQKLTFLDLSN-NLLNDLPEEMGS--LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLT 508 (565)
T ss_pred hhcceeeeccc-chhhhcchhhhh--hhhhheeccccc-ccccchHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcc
Confidence 44455555544 234444443332 224555555442 34444444333333444333333 4455555 22 22788
Q ss_pred eeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 153 KLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 153 ~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.|++.+ +.+..+|+ +++++++|++| ++.|
T Consensus 509 tLDL~n-Ndlq~IPp-~LgnmtnL~hL-eL~g 537 (565)
T KOG0472|consen 509 TLDLQN-NDLQQIPP-ILGNMTNLRHL-ELDG 537 (565)
T ss_pred eeccCC-CchhhCCh-hhccccceeEE-EecC
Confidence 888855 67888887 78999999998 8875
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.62 E-value=8.9e-08 Score=86.71 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC---------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEE
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK---------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFV 109 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~---------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 109 (185)
++|+.|++++ ++++.+|...+ ++|+.|++++ ..++|+.|++++| .+..+|..... +|+.|+
T Consensus 199 ~~L~~L~Ls~--N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~s----~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDN--NELKSLPENLQ---GNIKTLYANSNQLTSIPATLPDTIQEMELSIN-RITELPERLPS----ALQSLD 268 (754)
T ss_pred cCCcEEEecC--CCCCcCChhhc---cCCCEEECCCCccccCChhhhccccEEECcCC-ccCcCChhHhC----CCCEEE
Confidence 4577777776 57777776333 3566666665 1235666666654 34455543322 566666
Q ss_pred eecCcCCccccccCCCCCCCCEEeecCCCCCccCCC
Q 038808 110 ILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG 145 (185)
Q Consensus 110 l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~ 145 (185)
+++ +++..+|..+. ++|+.|++++| +++.+|.
T Consensus 269 Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 269 LFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred CcC-CccCccccccC--CCCcEEECCCC-ccccCcc
Confidence 643 45555555432 35666666655 4554443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.59 E-value=1.7e-09 Score=94.40 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCcCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCC-CcccCCC
Q 038808 30 EPVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPK-IVSFPER 96 (185)
Q Consensus 30 ~p~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~-l~~l~~~ 96 (185)
+|...+-++..|-.|++++ +++..+|+ ....+.+|++|.+++ .+++|+.|++++-.. +..+|..
T Consensus 141 IPn~lfinLtDLLfLDLS~--NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSN--NRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred CCchHHHhhHhHhhhcccc--chhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 3333344555566666666 66666666 455556666666666 344444455544321 2234432
Q ss_pred CCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 97 GLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 97 ~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
.-. +.+|..++++ |+++..+|+.+..+++|+.|+++++
T Consensus 218 ld~--l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 218 LDD--LHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhh--hhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcC
Confidence 211 3366666664 3566667766666666666666665
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.54 E-value=5.3e-09 Score=94.13 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=98.6
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCC-------------------------CCccEEEcCC------------CCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKS-------------------------PNLDSVSITK------------DHMS 78 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l-------------------------~~L~~L~l~~------------~l~~ 78 (185)
..+.+|+.|++.. +++..+|...+..+ +.|+.|++.+ ++.+
T Consensus 307 e~~~sL~tLdL~~--N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQS--NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccceeeeeeehh--ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 3478899999988 88888887444322 1122232222 7899
Q ss_pred CcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeee
Q 038808 79 LAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSI 156 (185)
Q Consensus 79 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l 156 (185)
||.|++++ +.+.++|...+. .++.|+.|++++ +.|+.+|+.+..+..|++|...++ .+..+|+ .+| .|+.+++
T Consensus 385 LKVLhLsy-NrL~~fpas~~~-kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~-qL~~lDl 459 (1081)
T KOG0618|consen 385 LKVLHLSY-NRLNSFPASKLR-KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLP-QLKVLDL 459 (1081)
T ss_pred eeeeeecc-cccccCCHHHHh-chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcC-cceEEec
Confidence 99999998 578888886665 355788888887 578889988888888888888877 7778887 455 8888888
Q ss_pred ecCCCCCCCchhhccCCCcccccccccC
Q 038808 157 VSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 157 ~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+|+++..+.......-+.|++| +++|
T Consensus 460 -S~N~L~~~~l~~~~p~p~LkyL-dlSG 485 (1081)
T KOG0618|consen 460 -SCNNLSEVTLPEALPSPNLKYL-DLSG 485 (1081)
T ss_pred -ccchhhhhhhhhhCCCccccee-eccC
Confidence 5677754322111122678888 7765
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.53 E-value=1.8e-09 Score=94.25 Aligned_cols=140 Identities=20% Similarity=0.308 Sum_probs=75.4
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
..+.+|+.|.+++ +-+..+....+|++++|+.|++++ .+.+|..++++. +++..+|...+. +
T Consensus 170 RRL~~LqtL~Ls~--NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~--l 244 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSN--NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYK--L 244 (1255)
T ss_pred HHHhhhhhhhcCC--ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhh--h
Confidence 4566788888887 667666665677777777777766 455555555543 445555544333 3
Q ss_pred CCccEEEeecC----------------------cCCccccccCCCCCCCCEEeecCCCC-CccCCCccc--cCCceeeee
Q 038808 103 PNLKLFVILDW----------------------KILEVIPNLRHSLSFLTELFIQECPK-LVSTPGSFP--ETLRKLSIV 157 (185)
Q Consensus 103 ~~L~~L~l~~c----------------------~~L~~lp~~~~~l~~L~~L~l~~c~~-L~~lp~~l~--~~L~~L~l~ 157 (185)
.+|+.|+++++ +++..+|..+..+++|+.|++.++.- .+.+|.|+- .+|+.+...
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 45555555442 23445555555555555555554411 223333111 133433332
Q ss_pred cCCCCCCCchhhccCCCccccccccc
Q 038808 158 SCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 158 ~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+ +++.-+|. ++.++..|++| .++
T Consensus 325 n-N~LElVPE-glcRC~kL~kL-~L~ 347 (1255)
T KOG0444|consen 325 N-NKLELVPE-GLCRCVKLQKL-KLD 347 (1255)
T ss_pred c-cccccCch-hhhhhHHHHHh-ccc
Confidence 2 34444444 56666666666 554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.52 E-value=4.5e-07 Score=82.28 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.1
Q ss_pred CccEEEeecCcCCcccc
Q 038808 104 NLKLFVILDWKILEVIP 120 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp 120 (185)
+|+.|+++++ +++.+|
T Consensus 303 ~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 303 GLQELSVSDN-QLASLP 318 (788)
T ss_pred ccceeECCCC-ccccCC
Confidence 6666666653 444444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=6e-07 Score=81.45 Aligned_cols=131 Identities=24% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----C----CCCCcEEeeeCCCCCcccCCCC------------
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----D----HMSLAILDIKQCPKIVSFPERG------------ 97 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----~----l~~L~~L~l~~c~~l~~l~~~~------------ 97 (185)
+++|++|++++ |+++.+|. ++ .+|+.|++++ . ..+|+.|++++ +.+..+|...
T Consensus 301 p~~L~~LdLS~--N~L~~Lp~--lp--~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~ 373 (788)
T PRK15387 301 PPGLQELSVSD--NQLASLPA--LP--SELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTLPSELYKLWAYNNR 373 (788)
T ss_pred ccccceeECCC--CccccCCC--Cc--ccccccccccCccccccccccccceEecCC-CccCCCCCCCcccceehhhccc
Confidence 46788888888 67877765 22 2345554444 1 12566666655 3444444210
Q ss_pred ---CCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCC
Q 038808 98 ---LPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLE 174 (185)
Q Consensus 98 ---~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~ 174 (185)
++....+|+.|+++++ .+..+|.. .++|+.|++++| .+..+|. ++.+|+.|++.+ +.+..+|. .+.+++
T Consensus 374 L~~LP~l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~-l~~~L~~L~Ls~-NqLt~LP~-sl~~L~ 445 (788)
T PRK15387 374 LTSLPALPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPM-LPSGLLSLSVYR-NQLTRLPE-SLIHLS 445 (788)
T ss_pred cccCcccccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCc-chhhhhhhhhcc-CcccccCh-HHhhcc
Confidence 0001125666666553 45555543 356777777777 5666763 444777777765 45677776 577888
Q ss_pred cccccccccC
Q 038808 175 NLRSLINIED 184 (185)
Q Consensus 175 sL~~L~~l~~ 184 (185)
+|+.| ++++
T Consensus 446 ~L~~L-dLs~ 454 (788)
T PRK15387 446 SETTV-NLEG 454 (788)
T ss_pred CCCeE-ECCC
Confidence 88888 7764
No 18
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=4.4e-07 Score=76.60 Aligned_cols=39 Identities=18% Similarity=0.499 Sum_probs=18.0
Q ss_pred CCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc
Q 038808 78 SLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP 120 (185)
Q Consensus 78 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp 120 (185)
+|++|.+++|..++.+|.. ++ ++|+.|.+.+|..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~-LP---~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS-IP---EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCch-hh---hhhhheEccCcccccccc
Confidence 3555555555555444432 22 245555555554444444
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=9.7e-07 Score=54.73 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccc-cCCCCCCCCEEeecCC
Q 038808 78 SLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQEC 137 (185)
Q Consensus 78 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c 137 (185)
+|++|++++| .+..++.+.+. .+++|++|++++ +.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTT-TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 4445555543 44455444433 234555555543 23444433 3455555566655555
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.32 E-value=5.4e-09 Score=86.89 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCC-CCCCCCEEeecCCCCCccCCC--ccccCC
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRH-SLSFLTELFIQECPKLVSTPG--SFPETL 151 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~-~l~~L~~L~l~~c~~L~~lp~--~l~~~L 151 (185)
.+.+|+.|++.. +++..+|. |+ +|+.|++|++.. ++++.+|.... +++++..|++.++ +++++|+ .+-.+|
T Consensus 204 ~l~~L~~LyL~~-Nki~~lPe--f~-gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 204 GLESLELLYLRR-NKIRFLPE--FP-GCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred chhhhHHHHhhh-cccccCCC--CC-ccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 345555555555 34555552 32 355677777754 45666776644 8889999999888 8888888 333478
Q ss_pred ceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 152 RKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 152 ~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++|++++ +.+..+|. .++++ .|+.| .+.|
T Consensus 278 ~rLDlSN-N~is~Lp~-sLgnl-hL~~L-~leG 306 (565)
T KOG0472|consen 278 ERLDLSN-NDISSLPY-SLGNL-HLKFL-ALEG 306 (565)
T ss_pred hhhcccC-CccccCCc-ccccc-eeeeh-hhcC
Confidence 8899976 56777776 67887 77777 6654
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=2e-06 Score=53.30 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=41.5
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWK 114 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 114 (185)
|+|++|++++ ++++.+|.+.|..+ ++|++|++++ +.+..++.+.|. .+++|++|++++|+
T Consensus 1 p~L~~L~l~~--n~l~~i~~~~f~~l------------~~L~~L~l~~-N~l~~i~~~~f~-~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN--NKLTEIPPDSFSNL------------PNLETLDLSN-NNLTSIPPDAFS-NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS--STESEECTTTTTTG------------TTESEEEETS-SSESEEETTTTT-TSTTESEEEETSSS
T ss_pred CcCcEEECCC--CCCCccCHHHHcCC------------CCCCEeEccC-CccCccCHHHHc-CCCCCCEEeCcCCc
Confidence 5677788877 47777777777764 6777777775 456777666554 46677777777653
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=9.1e-07 Score=66.69 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCCCEEEEccccccccccC
Q 038808 38 YPLLDHLFLDRSCDSLKMFI 57 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp 57 (185)
...+++|++.+ +.++.+.
T Consensus 18 ~~~~~~L~L~~--n~I~~Ie 35 (175)
T PF14580_consen 18 PVKLRELNLRG--NQISTIE 35 (175)
T ss_dssp --------------------
T ss_pred ccccccccccc--ccccccc
Confidence 44577888887 5666654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.11 E-value=2.5e-07 Score=83.59 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 33 TTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 33 ~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
+.+.++++|+.|++++ |.+..||...+.++..|+.|+++| .+..|+.|...+ +.+..+|. ...
T Consensus 377 p~l~~~~hLKVLhLsy--NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe-~~~-- 450 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSY--NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE-LAQ-- 450 (1081)
T ss_pred hhhccccceeeeeecc--cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeechh-hhh--
Confidence 3456788899999998 889889987777776666666655 344444444332 34444442 111
Q ss_pred CCCccEEEeecCcCCcc--ccccCCCCCCCCEEeecCCCC
Q 038808 102 TPNLKLFVILDWKILEV--IPNLRHSLSFLTELFIQECPK 139 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~ 139 (185)
++.|+.++++ |+++.. +|...-. +.|++|++++++.
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 2355555553 344433 1221111 4555555555544
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.06 E-value=2.2e-06 Score=79.08 Aligned_cols=103 Identities=22% Similarity=0.237 Sum_probs=77.8
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCC
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETL 151 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L 151 (185)
.++.|+.|++++|..+..+|..... +-+|++|++++ ..++.+|.+++++.+|.+|++..+..+..+|. .++ +|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~--Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-~L 644 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGE--LVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-SL 644 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhh--hhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcc-cc
Confidence 4789999999999999999874332 34999999977 46889999999999999999999988888876 355 99
Q ss_pred ceeeeecCC-CCCCCchhhccCCCcccccccc
Q 038808 152 RKLSIVSCH-KFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 152 ~~L~l~~c~-~l~~~~~~~l~~l~sL~~L~~l 182 (185)
+.|.+..-. ......-+.+.++.+|+.+ .+
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~l-s~ 675 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENL-SI 675 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhh-ee
Confidence 999997643 2222222345666666666 44
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=2.6e-07 Score=76.84 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCcCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEE
Q 038808 30 EPVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSV 70 (185)
Q Consensus 30 ~p~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L 70 (185)
+|...|+.+++|++|+++. |+++.+.++.|.++.+|.+|
T Consensus 82 iP~~aF~~l~~LRrLdLS~--N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSK--NNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred CChhhccchhhhceecccc--cchhhcChHhhhhhHhhhHH
Confidence 4445555666666666665 55555555555554444333
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.99 E-value=4.2e-07 Score=75.59 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
-+.-..+.+.. |.++.+|.+.|..+++|++|+++. ++++|.+|.+.+.++++++|.+.|. ++.+|
T Consensus 66 P~~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~sl 142 (498)
T KOG4237|consen 66 PPETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-GLSSL 142 (498)
T ss_pred CCcceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHH
Confidence 45677899998 899999999999876555555554 4445555555554555555554443 22234
Q ss_pred cEEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccCCC
Q 038808 106 KLFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVSTPG 145 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~lp~ 145 (185)
+.|.+.-+ .+..++ +.+..+++|..|.+.++ .++.++.
T Consensus 143 qrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~ 181 (498)
T KOG4237|consen 143 QRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICK 181 (498)
T ss_pred HHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhcc
Confidence 43333211 122222 23445555555555554 4444444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.91 E-value=2e-07 Score=80.58 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=90.5
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
.|..|+.+.+.. +.+..+|. .+.++..|..++++. .+--|+.|-+++ ++++.+|.+.-. ...|.
T Consensus 96 ~f~~Le~liLy~--n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~--~~tl~ 169 (722)
T KOG0532|consen 96 AFVSLESLILYH--NCIRTIPE-AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGL--LPTLA 169 (722)
T ss_pred HHHHHHHHHHHh--ccceecch-hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec-CccccCCccccc--chhHH
Confidence 344555555544 33444444 334444445555544 223467777766 577777764332 34888
Q ss_pred EEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCCcc-ccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 107 LFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSF-PETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l-~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.|+++. +++..+|..++++.+|+.|.+..+ .+..+|..+ .-.|.+|++ .|+++..+|. .|.+++.|++| .+.+
T Consensus 170 ~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDf-ScNkis~iPv-~fr~m~~Lq~l-~Len 243 (722)
T KOG0532|consen 170 HLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDF-SCNKISYLPV-DFRKMRHLQVL-QLEN 243 (722)
T ss_pred Hhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeec-ccCceeecch-hhhhhhhheee-eecc
Confidence 888865 467788888888888888888887 666677611 115888888 6899999987 79999999998 7754
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.6e-06 Score=70.81 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEccccccccccCC-CCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcccCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFIT-RPIPKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVSFPERGLPL 100 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~-~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~l~~~~~~~ 100 (185)
..+..|++..+++ | .+...+. +....+++++.|+++. .+|+|+.|+++.. .+..........
T Consensus 118 sn~kkL~~IsLdn-~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDN-Y-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecC-c-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 3566677777766 4 3444332 2345556666666666 5666666666652 232221111100
Q ss_pred CCCCccEEEeecCcC-------------------------CccccccCCCCCCCCEEeecCCCCCccCCC-----ccccC
Q 038808 101 ATPNLKLFVILDWKI-------------------------LEVIPNLRHSLSFLTELFIQECPKLVSTPG-----SFPET 150 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~-------------------------L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-----~l~~~ 150 (185)
.+++|+.|.+..|.- ...--.....+..|++|+++++ .+..++. .+| .
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~-~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLP-G 272 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-ccccccccccccccc-c
Confidence 123666666666541 1110111223556777777776 3334443 244 6
Q ss_pred CceeeeecCCCC-CCCchh----hccCCCccccccccc
Q 038808 151 LRKLSIVSCHKF-RPRRDW----RLHKLENLRSLINIE 183 (185)
Q Consensus 151 L~~L~l~~c~~l-~~~~~~----~l~~l~sL~~L~~l~ 183 (185)
|+.|.+..|.-- -..++. -...+++|++| .+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L-~i~ 309 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL-NIS 309 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceee-ecc
Confidence 666666655311 111111 12446677777 654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=2e-05 Score=59.41 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=41.9
Q ss_pred CCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccC-CCCCCCCEE
Q 038808 65 PNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLR-HSLSFLTEL 132 (185)
Q Consensus 65 ~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~-~~l~~L~~L 132 (185)
.+++.|++.+ .+.+|+.|+++++ .++.+.. ++ .+++|+.|++.+ +.++.+.+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~-~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LP-GLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--cc-ChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 4466676666 3678889999875 5666643 22 245899999876 5677776544 358899999
Q ss_pred eecCCCCCccCCC-----ccccCCceeeeecCCCC--CCCchhhccCCCccccc
Q 038808 133 FIQECPKLVSTPG-----SFPETLRKLSIVSCHKF--RPRRDWRLHKLENLRSL 179 (185)
Q Consensus 133 ~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l--~~~~~~~l~~l~sL~~L 179 (185)
++.++ ++..+.. .+| +|+.|++.+++-. .......+..+++|+.|
T Consensus 94 ~L~~N-~I~~l~~l~~L~~l~-~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 94 YLSNN-KISDLNELEPLSSLP-KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp E-TTS----SCCCCGGGGG-T-T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred ECcCC-cCCChHHhHHHHcCC-CcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 99887 6655544 345 8888888775422 12223456778888887
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.1e-07 Score=74.95 Aligned_cols=97 Identities=25% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCCCCcEEeeeCCCCC--cccCCCCCCCCCCCccEEEeecCcCCccccc--cCCCCCCCCEEeecCCCCCccCCC-----
Q 038808 75 DHMSLAILDIKQCPKI--VSFPERGLPLATPNLKLFVILDWKILEVIPN--LRHSLSFLTELFIQECPKLVSTPG----- 145 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l--~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~--~~~~l~~L~~L~l~~c~~L~~lp~----- 145 (185)
.+|+|+.|++.....+ +..+...+. .|+.|++++.+ +...+. -.+.++.|..|.++.| .+.++..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~----~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s 293 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQ----TLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVES 293 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhh----HHhhccccCCc-ccccccccccccccchhhhhcccc-CcchhcCCCccc
Confidence 4666666666554211 122223333 89999998854 545552 3678999999999887 5444322
Q ss_pred -----ccccCCceeeeecCCCCCCCch-hhccCCCccccc
Q 038808 146 -----SFPETLRKLSIVSCHKFRPRRD-WRLHKLENLRSL 179 (185)
Q Consensus 146 -----~l~~~L~~L~l~~c~~l~~~~~-~~l~~l~sL~~L 179 (185)
.+| +|+.|.+... ++..++. ..+.-+.+|+.|
T Consensus 294 ~~kt~~f~-kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 294 LDKTHTFP-KLEYLNISEN-NIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred hhhhcccc-cceeeecccC-ccccccccchhhccchhhhh
Confidence 145 8999999663 4432221 134445555555
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.72 E-value=4.4e-06 Score=67.74 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=7.9
Q ss_pred CCCCCCCCEEeecCC
Q 038808 123 RHSLSFLTELFIQEC 137 (185)
Q Consensus 123 ~~~l~~L~~L~l~~c 137 (185)
+..+++|++|++++|
T Consensus 217 ~~~~~~L~~L~ls~n 231 (319)
T cd00116 217 LASLKSLEVLNLGDN 231 (319)
T ss_pred hcccCCCCEEecCCC
Confidence 334455555555555
No 32
>PLN03150 hypothetical protein; Provisional
Probab=97.70 E-value=9.4e-05 Score=66.23 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=67.5
Q ss_pred CCEEEEccccccccc-cCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccc
Q 038808 41 LDHLFLDRSCDSLKM-FITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVI 119 (185)
Q Consensus 41 L~~L~l~~~C~~l~~-lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~l 119 (185)
++.|++++ +.++. +|. .+.. +++|+.|+++++.--..+|..... +++|+.|+++++.--..+
T Consensus 420 v~~L~L~~--n~L~g~ip~-~i~~------------L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 420 IDGLGLDN--QGLRGFIPN-DISK------------LRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEECCC--CCccccCCH-HHhC------------CCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCCCCCCC
Confidence 55666666 45543 333 3444 477888888876443456543222 458999999887555578
Q ss_pred cccCCCCCCCCEEeecCCCCCccCCCc---cccCCceeeeecCCCC
Q 038808 120 PNLRHSLSFLTELFIQECPKLVSTPGS---FPETLRKLSIVSCHKF 162 (185)
Q Consensus 120 p~~~~~l~~L~~L~l~~c~~L~~lp~~---l~~~L~~L~l~~c~~l 162 (185)
|+.++.+++|+.|++++|..-..+|.. ...++..+++.++..+
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 888888999999999988655567662 2225566777655444
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.69 E-value=1e-05 Score=65.56 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=27.0
Q ss_pred CccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCccC-----CC---ccccCCceeeeecCC
Q 038808 104 NLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVST-----PG---SFPETLRKLSIVSCH 160 (185)
Q Consensus 104 ~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~l-----p~---~l~~~L~~L~l~~c~ 160 (185)
+|++|++.+|. +. .++..+..+++|++|++++| .+... .. .++ +|+.|++.+|.
T Consensus 166 ~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~-~L~~L~ls~n~ 232 (319)
T cd00116 166 DLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLK-SLEVLNLGDNN 232 (319)
T ss_pred CcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccC-CCCEEecCCCc
Confidence 56666665543 22 22333344456777777666 33211 11 123 67777776653
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.7e-06 Score=69.94 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCccEEEcCC--------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcc---ccccCCCCC
Q 038808 65 PNLDSVSITK--------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEV---IPNLRHSLS 127 (185)
Q Consensus 65 ~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~---lp~~~~~l~ 127 (185)
.+|+.|+++. +++.|..|+++.|......-......--++|+.|++++|...-. +..-...+|
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 5566666655 45666666666665433221000000012555555555432111 111123566
Q ss_pred CCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 128 FLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 128 ~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.|.+|++++|..++.-.. .++ .|++|.+..|-.+..-..-.+...++|.+| ++.|
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lSlsRCY~i~p~~~~~l~s~psl~yL-dv~g 372 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLSLSRCYDIIPETLLELNSKPSLVYL-DVFG 372 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcc-hheeeehhhhcCCChHHeeeeccCcceEEE-Eecc
Confidence 777777777655543110 234 677777777766533222245556666666 6554
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=0.0001 Score=42.72 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCC
Q 038808 103 PNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTP 144 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp 144 (185)
++|++|++.++ +++.+|..++++++|+.|++++| .+..++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 37899999875 68888887899999999999998 666655
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.51 E-value=5.4e-05 Score=63.65 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=17.3
Q ss_pred CCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 150 TLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+++.|++.+ +.+..++. +..+.+++.| ++++
T Consensus 256 ~l~~L~~s~-n~i~~i~~--~~~~~~l~~L-~~s~ 286 (394)
T COG4886 256 NLETLDLSN-NQISSISS--LGSLTNLREL-DLSG 286 (394)
T ss_pred ccceecccc-cccccccc--ccccCccCEE-eccC
Confidence 566666644 34444442 5666666666 5543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=4e-05 Score=62.28 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=35.3
Q ss_pred CCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccC
Q 038808 76 HMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVST 143 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~l 143 (185)
.+.|+++++++ +.++.+....-- .|.++.|+++.+ .+..+. .+..+++|+.|+++++ .+.++
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL--~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~ 344 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKL--APKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGN-LLAEC 344 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhh--ccceeEEecccc-ceeeeh-hhhhcccceEeecccc-hhHhh
Confidence 45667777766 345555432211 347777777663 344332 3566777777777776 44333
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.37 E-value=0.00017 Score=66.82 Aligned_cols=129 Identities=14% Similarity=0.214 Sum_probs=90.7
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCC-CcccCCCCCCCCCCCccEEEeecC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPK-IVSFPERGLPLATPNLKLFVILDW 113 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~~~~L~~L~l~~c 113 (185)
...+...++..+.+ ++...++.. . ..+.|+.|-+.+... +..++.+.|. .++.|+.|++++|
T Consensus 519 ~~~~~~~rr~s~~~--~~~~~~~~~--~------------~~~~L~tLll~~n~~~l~~is~~ff~-~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMN--NKIEHIAGS--S------------ENPKLRTLLLQRNSDWLLEISGEFFR-SLPLLRVLDLSGN 581 (889)
T ss_pred ccchhheeEEEEec--cchhhccCC--C------------CCCccceEEEeecchhhhhcCHHHHh-hCcceEEEECCCC
Confidence 33455666666665 555555541 1 134677776665432 5555544343 4569999999999
Q ss_pred cCCccccccCCCCCCCCEEeecCCCCCccCCCccc--cCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 114 KILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 114 ~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
..+..+|..++.+-+|++|++++. .+..+|.++. ..|.+|++.....+..++. ....+++|++| .+.
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L-~l~ 650 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVL-RLP 650 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccc-hhhhcccccEE-Eee
Confidence 999999999999999999999988 8888888432 2788888887776666642 45559999998 764
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.34 E-value=0.00042 Score=62.12 Aligned_cols=86 Identities=16% Similarity=0.014 Sum_probs=57.2
Q ss_pred CcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceee
Q 038808 79 LAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLS 155 (185)
Q Consensus 79 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~ 155 (185)
++.|+++++.--..+|..... +++|+.|+++++.--..+|..++.+++|+.|++++|..-..+|. .++ +|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhC--CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-CCCEEE
Confidence 566777665433344443222 45888888887654457888888888999999988844446666 345 888888
Q ss_pred eecCCCCCCCch
Q 038808 156 IVSCHKFRPRRD 167 (185)
Q Consensus 156 l~~c~~l~~~~~ 167 (185)
+.++.-...+|.
T Consensus 497 Ls~N~l~g~iP~ 508 (623)
T PLN03150 497 LNGNSLSGRVPA 508 (623)
T ss_pred CcCCcccccCCh
Confidence 877653345554
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.32 E-value=0.00014 Score=61.16 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCC-CccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSP-NLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~-~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
++.++.|.+.+ +.++.+|. ....+. +|+.|++++ .+++|+.|+++++ .+.+++..... .++|
T Consensus 115 ~~~l~~L~l~~--n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~--~~~L 188 (394)
T COG4886 115 LTNLTSLDLDN--NNITDIPP-LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSN--LSNL 188 (394)
T ss_pred ccceeEEecCC--cccccCcc-ccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhh--hhhh
Confidence 34566666665 56666655 122221 455555544 4555555555553 34455443211 1255
Q ss_pred cEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 106 KLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+.|++++ +++..+|........|+++.+.+++.+..+.. .+. ++..+.+.+ +.+..++. .+..++++++| +++
T Consensus 189 ~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~-~l~~l~l~~-n~~~~~~~-~~~~l~~l~~L-~~s 263 (394)
T COG4886 189 NNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK-NLSGLELSN-NKLEDLPE-SIGNLSNLETL-DLS 263 (394)
T ss_pred hheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcc-cccccccCC-ceeeeccc-hhcccccccee-ccc
Confidence 5555554 34555555444444456666655532222221 122 344443211 22222222 45566666666 554
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=8.4e-06 Score=65.96 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=24.4
Q ss_pred CCCCCcEEeeeCCCCCccc-CCCCCCCCCCCccEEEeecCcCCccccc---cCCCCCCCCEEeecCC
Q 038808 75 DHMSLAILDIKQCPKIVSF-PERGLPLATPNLKLFVILDWKILEVIPN---LRHSLSFLTELFIQEC 137 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~L~~lp~---~~~~l~~L~~L~l~~c 137 (185)
..++|.+|++++|..++.- ....+. ++.|++|.++.|..+. |+ .+...|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHh--cchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 3455555555554444320 001111 2245555555554331 11 2334455555555554
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.25 E-value=7e-05 Score=65.19 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=80.4
Q ss_pred CCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEE
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLF 108 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L 108 (185)
-|+.|.+++ ++++.+|. .++.++.|..|+.+. .+.+|+.|.++. +.+..+|..... + .|..|
T Consensus 144 pLkvli~sN--Nkl~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~--L-pLi~l 216 (722)
T KOG0532|consen 144 PLKVLIVSN--NKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCS--L-PLIRL 216 (722)
T ss_pred cceeEEEec--CccccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhC--C-ceeee
Confidence 367777777 77877776 344556666776665 577788888877 467777765443 3 68889
Q ss_pred EeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC-----ccccCCceeeeecC
Q 038808 109 VILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG-----SFPETLRKLSIVSC 159 (185)
Q Consensus 109 ~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c 159 (185)
++ .|+++..+|..+.+|+.|++|.++++ -|++-|. |.-.=.+.|++.-|
T Consensus 217 Df-ScNkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DF-SCNKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ec-ccCceeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 98 47889999999999999999999988 5666554 22224577777777
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00014 Score=65.70 Aligned_cols=113 Identities=22% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCCCEEEEccccccccc-cCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKM-FITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~-lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
.+|++|+|++ -..+.. .|...-..+|+|++|.+.+ +||+|..|+|+++ ++..+. |.. ++.+
T Consensus 122 ~nL~~LdI~G-~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~-GIS--~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISG-SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLS-GIS--RLKN 196 (699)
T ss_pred HhhhhcCccc-cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcH-HHh--cccc
Confidence 4677777766 222211 1111112346677777776 6888888888875 455552 111 1346
Q ss_pred ccEEEeecCcCCcccc--ccCCCCCCCCEEeecCCCCCccC--C------C-ccccCCceeeeec
Q 038808 105 LKLFVILDWKILEVIP--NLRHSLSFLTELFIQECPKLVST--P------G-SFPETLRKLSIVS 158 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp--~~~~~l~~L~~L~l~~c~~L~~l--p------~-~l~~~L~~L~l~~ 158 (185)
|+.|.+.+.+ ++.-. ..+.++++|+.|++++-.....- . . .+| +|+.|+.++
T Consensus 197 Lq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSG 259 (699)
T ss_pred HHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCC
Confidence 6666665432 11111 13457888888888765332211 0 0 345 777777654
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.18 E-value=7.5e-05 Score=60.71 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
-|..|+.+++++ |.++.+.. .+.-+|.++.|+++. .+++|+.|+++++ .+..+.. ....+.+.+
T Consensus 282 TWq~LtelDLS~--N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N-~Ls~~~G--wh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSG--NLITQIDE-SVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN-LLAECVG--WHLKLGNIK 355 (490)
T ss_pred hHhhhhhccccc--cchhhhhh-hhhhccceeEEeccccceeeehhhhhcccceEeecccc-hhHhhhh--hHhhhcCEe
Confidence 456677777776 66666554 222335556666665 5666667776652 3333311 111133555
Q ss_pred EEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 107 LFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
.|.+.. +.++.+ .+++.+-+|..|++.++
T Consensus 356 tL~La~-N~iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 356 TLKLAQ-NKIETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred eeehhh-hhHhhh-hhhHhhhhheecccccc
Confidence 555544 233333 23445555555555554
No 45
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.0047 Score=43.22 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=60.8
Q ss_pred CcCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEe
Q 038808 31 PVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVI 110 (185)
Q Consensus 31 p~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l 110 (185)
+...+..+.+|+.+.+.+ .++.++...|.+. ++|+.+.+.+ .+..++...+. .+++++.+.+
T Consensus 4 ~~~~F~~~~~l~~i~~~~---~~~~I~~~~F~~~------------~~l~~i~~~~--~~~~i~~~~F~-~~~~l~~i~~ 65 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN---TIKKIGENAFSNC------------TSLKSINFPN--NLTSIGDNAFS-NCKSLESITF 65 (129)
T ss_dssp -TTTTTT-TT--EEEETS---T--EE-TTTTTT-------------TT-SEEEESS--TTSCE-TTTTT-T-TT-EEEEE
T ss_pred CHHHHhCCCCCCEEEECC---CeeEeChhhcccc------------cccccccccc--cccccceeeee-cccccccccc
Confidence 334566778899988865 5778888778765 5677777765 47777766665 3557888888
Q ss_pred ecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-ccc-cCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 111 LDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-SFP-ETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 111 ~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~l~-~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
.+ .+..++.. +..++.|+.+.+.. .+..++. .+. .+++.+.+. .++..++...+.+.++|+
T Consensus 66 ~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~--~~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 66 PN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIP--SNITKIEENAFKNCTKLK 129 (129)
T ss_dssp TS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-T--TB-SS----GGG------
T ss_pred cc--cccccccccccccccccccccCc--cccEEchhhhcCCCceEEEEC--CCccEECCccccccccCC
Confidence 54 45555553 45688888888854 3555555 332 167777664 356666666777777664
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.01 E-value=0.00016 Score=60.78 Aligned_cols=141 Identities=17% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCCCCCEEEEccccccccccCCCCC-CCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPI-PKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~-~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..|+.|..++ |..++..+...+ .+..+|+.+.+.+ +.+.|+.+++.+|.....-.-..+..+
T Consensus 292 ~c~~lq~l~~s~-~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSS-CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccC-CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 355666677666 666555433222 2235666666655 567777888777765543322223335
Q ss_pred CCCccEEEeecCcCCccc-----cccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhc-c
Q 038808 102 TPNLKLFVILDWKILEVI-----PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRL-H 171 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~l-----p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l-~ 171 (185)
++.|+.|.+++|...... ...-..+..|+.+.+++||.+..--. ..+ +|+.+++.+|....+-+...+ .
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechhhhhhhhhHHHHh
Confidence 778888888888655432 22334567788888888877653221 123 888888888887744332222 3
Q ss_pred CCCccccc
Q 038808 172 KLENLRSL 179 (185)
Q Consensus 172 ~l~sL~~L 179 (185)
++++++..
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 56665543
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=5.1e-05 Score=64.69 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCCCCCEEEEccccccccccCC-CCCCCCCCccEEEcCC-----------------CCCCCcEEeeeCCCCCcccCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFIT-RPIPKSPNLDSVSITK-----------------DHMSLAILDIKQCPKIVSFPERGL 98 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~-~~~~~l~~L~~L~l~~-----------------~l~~L~~L~l~~c~~l~~l~~~~~ 98 (185)
.+++|+.|.+.+ |..+..... ......++|+.|++++ ..++|+.|+++.|..+.......+
T Consensus 186 ~~~~L~~l~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSG-CSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcc-cccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 478888888888 877775321 0234446677777652 456777777777765543332222
Q ss_pred CCCCCCccEEEeecCcCCcc--ccccCCCCCCCCEEeecCCCCC
Q 038808 99 PLATPNLKLFVILDWKILEV--IPNLRHSLSFLTELFIQECPKL 140 (185)
Q Consensus 99 ~~~~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~L 140 (185)
..++++|+.|.+.+|..+.. +-.....++.|++|++++|..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22355777777777766432 2222345677888888777655
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.60 E-value=0.0018 Score=37.37 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=19.9
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQC 87 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c 87 (185)
++|++|++++ ++++.+|. .+.++ ++|+.|+++++
T Consensus 1 ~~L~~L~l~~--N~i~~l~~-~l~~l------------~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSN--NQITDLPP-ELSNL------------PNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETS--SS-SSHGG-HGTTC------------TTSSEEEETSS
T ss_pred CcceEEEccC--CCCcccCc-hHhCC------------CCCCEEEecCC
Confidence 4677777777 67777765 35554 55555555554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.58 E-value=0.0004 Score=58.49 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccc----------------------------cCCCC
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPN----------------------------LRHSL 126 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~----------------------------~~~~l 126 (185)
....|+.|..++|..+...+...+..++.+|+.+.+..|.++...-. --.+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 35566666666666655443333333456777887777775432110 01245
Q ss_pred CCCCEEeecCCCCCccC-----CC---ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 127 SFLTELFIQECPKLVST-----PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 127 ~~L~~L~l~~c~~L~~l-----p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+.|+.|.++.|..++.- .. +.. .++.+.+.+|+.+..-...-+..+++|+.+ ++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~n~p~i~d~~Le~l~~c~~Leri-~l~ 434 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLE-GLEVLELDNCPLITDATLEHLSICRNLERI-ELI 434 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhcccccc-ccceeeecCCCCchHHHHHHHhhCccccee-eee
Confidence 56666666655333222 10 111 566677777766543322234555566665 543
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.45 E-value=0.00072 Score=61.21 Aligned_cols=113 Identities=22% Similarity=0.127 Sum_probs=58.5
Q ss_pred CCccEEEcCC--------------CCCCCcEEeeeCCCCCc-ccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCC
Q 038808 65 PNLDSVSITK--------------DHMSLAILDIKQCPKIV-SFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFL 129 (185)
Q Consensus 65 ~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L 129 (185)
.+|+.|+|+| .+|+|++|.+.+-.-.. ++.. +-..+++|..|+|+++ ++..+ .+++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGT-NISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH--HhhccCccceeecCCC-CccCc-HHHhccccH
Confidence 5667777766 57777777776532111 1111 0012337777777764 34544 456677777
Q ss_pred CEEeecCCCCCccCCC-----ccccCCceeeeecCCCCCCC--ch---hhccCCCcccccccccC
Q 038808 130 TELFIQECPKLVSTPG-----SFPETLRKLSIVSCHKFRPR--RD---WRLHKLENLRSLINIED 184 (185)
Q Consensus 130 ~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l~~~--~~---~~l~~l~sL~~L~~l~~ 184 (185)
+.|.+.+. ..+.... .+- +|+.|+|+.-.+.... .. ..-..|+.|+.| +.++
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~-~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL-DcSg 259 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLK-KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL-DCSG 259 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhccc-CCCeeeccccccccchHHHHHHHHhcccCccccEE-ecCC
Confidence 77777665 3333222 222 6777777653332111 00 011236667766 6554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.96 E-value=0.017 Score=44.54 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCCEEEEccccccccccCCCCCCCCCCccEEEcCC
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK 74 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~ 74 (185)
+...+++++ +.+..++. |+.++.|++|.+..
T Consensus 43 ~~d~iDLtd--Ndl~~l~~--lp~l~rL~tLll~n 73 (233)
T KOG1644|consen 43 QFDAIDLTD--NDLRKLDN--LPHLPRLHTLLLNN 73 (233)
T ss_pred ccceecccc--cchhhccc--CCCccccceEEecC
Confidence 445566666 55555554 56554444444433
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.78 E-value=0.00026 Score=63.46 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEe
Q 038808 64 SPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELF 133 (185)
Q Consensus 64 l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~ 133 (185)
++.|++|+++. .++.|++|+|+. +.+..+|.-... +| .|+.|.+++ +.++.+- ++.++.+|+.|+
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~-gc-~L~~L~lrn-N~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMV-GC-KLQLLNLRN-NALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhccccccccccc-chhccccccchh-hh-hheeeeecc-cHHHhhh-hHHhhhhhhccc
Confidence 35667777776 678888999886 467777653332 24 588888876 4566663 567888999999
Q ss_pred ecCCCCCccCCC----ccccCCceeeeecCC
Q 038808 134 IQECPKLVSTPG----SFPETLRKLSIVSCH 160 (185)
Q Consensus 134 l~~c~~L~~lp~----~l~~~L~~L~l~~c~ 160 (185)
++++ .+..... +....|+.|++.|.+
T Consensus 261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9887 4444433 112277888887744
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0022 Score=49.28 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=8.2
Q ss_pred CCCCCEEeecCCCCCc
Q 038808 126 LSFLTELFIQECPKLV 141 (185)
Q Consensus 126 l~~L~~L~l~~c~~L~ 141 (185)
.++|+.|++++|+.++
T Consensus 150 ~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchheeeccCCCeec
Confidence 3455555555555544
No 54
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.00078 Score=51.69 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=43.9
Q ss_pred CCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCc
Q 038808 77 MSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLV 141 (185)
Q Consensus 77 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~ 141 (185)
+.++.|.+.+|..+...--+.+....++|+.|++++|+++++-- ..+..+++|+.|.+.+.+...
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 67778888888877654221111123599999999998887521 245678888888888776554
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.008 Score=47.73 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------------CCCCCcEEeeeC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------------DHMSLAILDIKQ 86 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~ 86 (185)
..+..|+.|.+.+ | .++++-. |+.+++|+.|.++. ..|+|++|++++
T Consensus 40 d~~~~le~ls~~n-~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 40 DEFVELELLSVIN-V-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred ccccchhhhhhhc-c-ceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 4577888888888 4 5655554 77776666666655 346666666654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.00026 Score=56.98 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=9.0
Q ss_pred CCCCCCCCEEeecCCCCC
Q 038808 123 RHSLSFLTELFIQECPKL 140 (185)
Q Consensus 123 ~~~l~~L~~L~l~~c~~L 140 (185)
+.++|+|+.|.+..+|.-
T Consensus 84 LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcCchhhhHhhccCCcc
Confidence 344555555555555443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.023 Score=46.47 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEccccccccccCCCCCC-CCCCccEEEcCC-------------CCCCCcEEeeeCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIP-KSPNLDSVSITK-------------DHMSLAILDIKQC 87 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~-~l~~L~~L~l~~-------------~l~~L~~L~l~~c 87 (185)
.++|.|+.|+++ ||.+... .+.+| .+.||+.|.+.+ .+|.+++|+++..
T Consensus 94 e~lP~l~~LNls--~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 94 EQLPALTTLNLS--CNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcCccceEeecc--CCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 579999999998 6887652 11233 457889998887 5677777777653
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.12 E-value=0.0048 Score=52.55 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=58.4
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
...+.+|+.|++.+ ++++.+.. .+..+++|+.|++++ .++.|+.|++.++ .+..+..-.. +.+
T Consensus 91 l~~~~~l~~l~l~~--n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~~~~---l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD--NKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN-LISDISGLES---LKS 163 (414)
T ss_pred cccccceeeeeccc--cchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccC-cchhccCCcc---chh
Confidence 45677788888887 77777654 256667778887777 5666777777763 4555543211 237
Q ss_pred ccEEEeecCcCCcccccc-CCCCCCCCEEeecCC
Q 038808 105 LKLFVILDWKILEVIPNL-RHSLSFLTELFIQEC 137 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c 137 (185)
|+.+++.++. +..+... ...+.+++.+.+.++
T Consensus 164 L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 164 LKLLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 7777776643 3333221 355666777766665
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.11 E-value=0.091 Score=36.56 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCcCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEE
Q 038808 30 EPVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFV 109 (185)
Q Consensus 30 ~p~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 109 (185)
++...+..+++|+.+.+.+ +++.++...|.+. ++++.+.+.+ .+..++...+. .+++|+.+.
T Consensus 26 I~~~~F~~~~~l~~i~~~~---~~~~i~~~~F~~~------------~~l~~i~~~~--~~~~i~~~~F~-~~~~l~~i~ 87 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPN---NLTSIGDNAFSNC------------KSLESITFPN--NLKSIGDNAFS-NCTNLKNID 87 (129)
T ss_dssp E-TTTTTT-TT-SEEEESS---TTSCE-TTTTTT-------------TT-EEEEETS--TT-EE-TTTTT-T-TTECEEE
T ss_pred eChhhcccccccccccccc---cccccceeeeecc------------cccccccccc--ccccccccccc-ccccccccc
Confidence 3444567788999999976 5888988888875 4556666643 45555555443 345777777
Q ss_pred eecCcCCcccccc-CCCCCCCCEEeec
Q 038808 110 ILDWKILEVIPNL-RHSLSFLTELFIQ 135 (185)
Q Consensus 110 l~~c~~L~~lp~~-~~~l~~L~~L~l~ 135 (185)
+.. ++..++.. +.+. .|+.+.+.
T Consensus 88 ~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cCc--cccEEchhhhcCC-CceEEEEC
Confidence 643 35555443 4444 67766664
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.97 E-value=0.018 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=15.5
Q ss_pred CCCEEEEccccccccccCCCCCCC
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPK 63 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~ 63 (185)
+|++|++++ | +++.+|.+ |.+
T Consensus 1 ~L~~Ldls~-n-~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSG-N-NLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETS-S-EESEEGTT-TTT
T ss_pred CccEEECCC-C-cCEeCChh-hcC
Confidence 478888888 5 78888874 553
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.96 E-value=0.0032 Score=53.63 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=60.6
Q ss_pred CCCCCCCEEEEccccccc-cccC---CCCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcccCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSL-KMFI---TRPIPKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVSFPERG 97 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l-~~lp---~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~l~~~~ 97 (185)
..+++|+.|++.+ |... ...+ ......+.+|+.++++. ..++|+.|.+.+|..+.......
T Consensus 211 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 211 LKCPNLEELDLSG-CCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred hhCchhheecccC-cccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 4678888898886 5111 1111 11223346777777766 47899999988888754332222
Q ss_pred CCCCCCCccEEEeecCcCCcc--ccccCCCCCCCCEEeecCC
Q 038808 98 LPLATPNLKLFVILDWKILEV--IPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 98 ~~~~~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c 137 (185)
....+++|++|+++.|..+.. +.....++++|+.|.+..+
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 222466899999999988632 3223344565555554433
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.73 E-value=0.019 Score=45.66 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCCccEEEeecC--cCCccccccCCCCCCCCEEeecCCCCCc---cCCC--ccccCCceeeeecCCCCC--CCchhhccC
Q 038808 102 TPNLKLFVILDW--KILEVIPNLRHSLSFLTELFIQECPKLV---STPG--SFPETLRKLSIVSCHKFR--PRRDWRLHK 172 (185)
Q Consensus 102 ~~~L~~L~l~~c--~~L~~lp~~~~~l~~L~~L~l~~c~~L~---~lp~--~l~~~L~~L~l~~c~~l~--~~~~~~l~~ 172 (185)
+++|++|.++.. .-...++.-...+|+|++|+++++ +++ ++++ .+. +|..|++.+|.... .--...+.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~-nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE-NLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc-chhhhhcccCCccccccHHHHHHHH
Confidence 346666666543 111122223334566666666665 322 2222 233 56666666665432 112223444
Q ss_pred CCccccc
Q 038808 173 LENLRSL 179 (185)
Q Consensus 173 l~sL~~L 179 (185)
+++|++|
T Consensus 142 l~~L~~L 148 (260)
T KOG2739|consen 142 LPSLKYL 148 (260)
T ss_pred hhhhccc
Confidence 5555555
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.021 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=7.8
Q ss_pred ccEEEeecCcCCcccccc
Q 038808 105 LKLFVILDWKILEVIPNL 122 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~ 122 (185)
|++|++++| +++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444555444 34444443
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.39 E-value=0.034 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=7.8
Q ss_pred CCCCEEEEccccccccccC
Q 038808 39 PLLDHLFLDRSCDSLKMFI 57 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp 57 (185)
++|+.|++++ | +++.+|
T Consensus 1 ~~L~~L~l~~-n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSN-N-RLTSLP 17 (17)
T ss_dssp TT-SEEEETS-S---SSE-
T ss_pred CccCEEECCC-C-CCCCCc
Confidence 3566666666 4 355554
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.06 E-value=0.0061 Score=55.09 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC-ccc-cCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 103 PNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG-SFP-ETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~l~-~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
+.|+.|+++++ ++..+- .+..+++|++|+++++ .|..+|. +.. ..|..|.++| +-++.+- ++.+|.+|+.|
T Consensus 187 ~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~--gie~LksL~~L- 259 (1096)
T KOG1859|consen 187 PALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTLR--GIENLKSLYGL- 259 (1096)
T ss_pred HHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhhh--hHHhhhhhhcc-
Confidence 47777777763 444443 5667788888888887 7777776 322 2577777766 3454443 56777777777
Q ss_pred ccc
Q 038808 181 NIE 183 (185)
Q Consensus 181 ~l~ 183 (185)
+++
T Consensus 260 Dls 262 (1096)
T KOG1859|consen 260 DLS 262 (1096)
T ss_pred chh
Confidence 654
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.81 E-value=0.076 Score=45.23 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCCCCcEEeeeCCCCCcccCC--CCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC-c-cccC
Q 038808 75 DHMSLAILDIKQCPKIVSFPE--RGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG-S-FPET 150 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~-l~~~ 150 (185)
.+.+|+.|++.+ +.++.+.. ..+ ++|++|++++ +.++.+. ++..++.|+.|++.+| .+..++. . ++ +
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~l~~~----~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~~~~l~-~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENLLSSL----VNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN-LISDISGLESLK-S 163 (414)
T ss_pred cccceeeeeccc-cchhhcccchhhh----hcchheeccc-ccccccc-chhhccchhhheeccC-cchhccCCccch-h
Confidence 457788888876 46666644 333 4899999976 4566653 4567778999999988 7777775 2 34 7
Q ss_pred CceeeeecCCCCCCCch-hhccCCCcccccccccC
Q 038808 151 LRKLSIVSCHKFRPRRD-WRLHKLENLRSLINIED 184 (185)
Q Consensus 151 L~~L~l~~c~~l~~~~~-~~l~~l~sL~~L~~l~~ 184 (185)
|+.+++.++. +..+.. . +..+.+++.+ .+.+
T Consensus 164 L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l-~l~~ 195 (414)
T KOG0531|consen 164 LKLLDLSYNR-IVDIENDE-LSELISLEEL-DLGG 195 (414)
T ss_pred hhcccCCcch-hhhhhhhh-hhhccchHHH-hccC
Confidence 8888886643 333332 1 3567777766 5543
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.61 E-value=0.11 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=15.4
Q ss_pred CCCCCEEEEccccccccccCCCCCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIP 62 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~ 62 (185)
+++|++|++++ |+++.+|.+.|.
T Consensus 1 L~~L~~L~L~~--N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSN--NQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCC--CcCCcCCHHHcc
Confidence 35677777776 677777765553
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.61 E-value=0.11 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=15.4
Q ss_pred CCCCCEEEEccccccccccCCCCCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIP 62 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~ 62 (185)
+++|++|++++ |+++.+|.+.|.
T Consensus 1 L~~L~~L~L~~--N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSN--NQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCC--CcCCcCCHHHcc
Confidence 35677777776 677777765553
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.50 E-value=0.48 Score=36.75 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCC-CCCCCCCCCccEEEee
Q 038808 33 TTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPE-RGLPLATPNLKLFVIL 111 (185)
Q Consensus 33 ~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~ 111 (185)
+-+..++.|..|.+.+ |+++.+.++.-.. +++|+.|.+.+ +++..+.+ ..+. .|+.|++|.+-
T Consensus 58 ~~lp~l~rL~tLll~n--NrIt~I~p~L~~~------------~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll 121 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNN--NRITRIDPDLDTF------------LPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLL 121 (233)
T ss_pred ccCCCccccceEEecC--Ccceeeccchhhh------------ccccceEEecC-cchhhhhhcchhc-cCCccceeeec
Confidence 3455688999999998 8999987643333 35566666655 33444322 1111 34577777776
Q ss_pred cCcCCccccc----cCCCCCCCCEEeecCC
Q 038808 112 DWKILEVIPN----LRHSLSFLTELFIQEC 137 (185)
Q Consensus 112 ~c~~L~~lp~----~~~~l~~L~~L~l~~c 137 (185)
+.+ .+.-.. -+..+|+|+.|++.+-
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 543 222221 1345777777777654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=0.025 Score=45.89 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKI 90 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l 90 (185)
..+|.|+.|.++- |+++++.+ |..+++|++|++.. ++|+|+.|.|.+++..
T Consensus 38 ~kMp~lEVLsLSv--NkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSV--NKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeec--cccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 3567788887775 77777665 66666666665544 4555555555554433
No 71
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.75 E-value=0.19 Score=25.24 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=9.0
Q ss_pred CCCCEEEEccccccccc
Q 038808 39 PLLDHLFLDRSCDSLKM 55 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~ 55 (185)
++|++|++++ |.+++.
T Consensus 2 ~~L~~L~l~~-C~~itD 17 (26)
T smart00367 2 PNLRELDLSG-CTNITD 17 (26)
T ss_pred CCCCEeCCCC-CCCcCH
Confidence 4556666666 655543
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.30 E-value=0.043 Score=45.54 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=9.5
Q ss_pred CCCCCCCCEEeecCC
Q 038808 123 RHSLSFLTELFIQEC 137 (185)
Q Consensus 123 ~~~l~~L~~L~l~~c 137 (185)
+.++++|+.|++.++
T Consensus 209 l~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDN 223 (382)
T ss_pred HHhCCcceeeecccc
Confidence 455666666666665
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.75 E-value=0.13 Score=37.67 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=29.3
Q ss_pred CCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 77 MSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 77 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
..|+..++++ +.++.+|...-. ..+..+.|++.+ +.+..+|+.+..++.|+.|++..+
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~-kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTI-KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhh-ccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 3444455554 345555442111 112555555544 345556666666666666666655
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.85 E-value=0.064 Score=39.22 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILE 117 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~ 117 (185)
-..|+..++++ |.++.+|...-.. ++-.+.|++.+ +++.++|...-. ++.|+.|++..+ .+.
T Consensus 52 ~~el~~i~ls~--N~fk~fp~kft~k------------f~t~t~lNl~~-neisdvPeE~Aa--m~aLr~lNl~~N-~l~ 113 (177)
T KOG4579|consen 52 GYELTKISLSD--NGFKKFPKKFTIK------------FPTATTLNLAN-NEISDVPEELAA--MPALRSLNLRFN-PLN 113 (177)
T ss_pred CceEEEEeccc--chhhhCCHHHhhc------------cchhhhhhcch-hhhhhchHHHhh--hHHhhhcccccC-ccc
Confidence 34566778888 7888888733222 56778888877 578888876322 568999999774 466
Q ss_pred cccccCCCCCCCCEEeecCCCCCccCCC
Q 038808 118 VIPNLRHSLSFLTELFIQECPKLVSTPG 145 (185)
Q Consensus 118 ~lp~~~~~l~~L~~L~l~~c~~L~~lp~ 145 (185)
..|.-+..+.++-.|+..++ ....+|-
T Consensus 114 ~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred cchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 66665555666777776665 3444443
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.65 E-value=1.2 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.3
Q ss_pred CCCCEEEEccccccccccCC
Q 038808 39 PLLDHLFLDRSCDSLKMFIT 58 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~ 58 (185)
++|++|++++ |+++.+|.
T Consensus 2 ~~L~~L~vs~--N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN--NQLTSLPE 19 (26)
T ss_pred cccceeecCC--CccccCcc
Confidence 4688888887 88888886
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=2 Score=35.53 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=40.6
Q ss_pred CCccEEEcCC--------------CCCCCcEEeeeCCCCCcc-cCCCCCCCCCCCccEEEeecCcCC--ccccccCCCCC
Q 038808 65 PNLDSVSITK--------------DHMSLAILDIKQCPKIVS-FPERGLPLATPNLKLFVILDWKIL--EVIPNLRHSLS 127 (185)
Q Consensus 65 ~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~L~~L~l~~c~~L--~~lp~~~~~l~ 127 (185)
+.++.+++.+ ++|.|+.|+++. +.+.+ +....+| ..+|+.|.+.+ ..+ +.....+..+|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~p--~~nl~~lVLNg-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPLP--LKNLRVLVLNG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCccc--ccceEEEEEcC-CCCChhhhhhhhhcch
Confidence 5567777766 789999999975 44432 2111134 56888888854 222 12223345566
Q ss_pred CCCEEeecCC
Q 038808 128 FLTELFIQEC 137 (185)
Q Consensus 128 ~L~~L~l~~c 137 (185)
.+++|+++.+
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 6666666554
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=71.36 E-value=1.8 Score=36.13 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCCCCCCEEEEccccccccccC----CCCCCCCCCccEEEcCC----------------CCCCCcEEeeeCCCCCcccCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFI----TRPIPKSPNLDSVSITK----------------DHMSLAILDIKQCPKIVSFPE 95 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp----~~~~~~l~~L~~L~l~~----------------~l~~L~~L~l~~c~~l~~l~~ 95 (185)
...|.|+.+.+.. +.+..-. ...|..+++|+.|++.+ .+++|+.|++++|. ++.=..
T Consensus 182 ~~~~~leevr~~q--N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga 258 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQ--NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGA 258 (382)
T ss_pred HhccccceEEEec--ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccH
Confidence 4457788877776 4443211 01245557788888877 57899999999995 332110
Q ss_pred ----CCCCCCCCCccEEEeecCcCCc----cccccCCCCCCCCEEeecCC
Q 038808 96 ----RGLPLATPNLKLFVILDWKILE----VIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 96 ----~~~~~~~~~L~~L~l~~c~~L~----~lp~~~~~l~~L~~L~l~~c 137 (185)
..+....++|+.|.+.+|..-. .+-..+...+.|+.|++++|
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 1111123499999998764321 12233456889999999999
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=59.35 E-value=9.5 Score=31.28 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCCCEEEEccccccccccCC----CCCCCCCCccEEEcCC----------------------CCCCCcEEeeeCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFIT----RPIPKSPNLDSVSITK----------------------DHMSLAILDIKQCPKIV 91 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~----~~~~~l~~L~~L~l~~----------------------~l~~L~~L~l~~c~~l~ 91 (185)
+..++.+++++ |-+..-.. ..+.+-.+|+..++++ .+|+|+..+++++..-.
T Consensus 29 ~d~~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 55677777777 43322110 0123335566666655 56788888887754333
Q ss_pred ccCC--CCCCCCCCCccEEEeecCcCCccccc--------------cCCCCCCCCEEeecCCCCCccCCC-----ccc--
Q 038808 92 SFPE--RGLPLATPNLKLFVILDWKILEVIPN--------------LRHSLSFLTELFIQECPKLVSTPG-----SFP-- 148 (185)
Q Consensus 92 ~l~~--~~~~~~~~~L~~L~l~~c~~L~~lp~--------------~~~~l~~L~~L~l~~c~~L~~lp~-----~l~-- 148 (185)
.+|. +.+-...+.|+.|.+.+|. +.-+.. -..+-|.|+.....++ .+...|. .+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhh
Confidence 3332 1111123478888887653 332211 1234567777777666 5655554 111
Q ss_pred cCCceeeeecCCCCCC-----CchhhccCCCccccccccc
Q 038808 149 ETLRKLSIVSCHKFRP-----RRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 149 ~~L~~L~l~~c~~l~~-----~~~~~l~~l~sL~~L~~l~ 183 (185)
.+|+.+.+... .++. +...++..+++|+.| +++
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevL-Dlq 222 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVL-DLQ 222 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceee-ecc
Confidence 15666666542 2321 122345566667666 654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.88 E-value=8.3 Score=18.44 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=4.8
Q ss_pred CCCCEEeecCC
Q 038808 127 SFLTELFIQEC 137 (185)
Q Consensus 127 ~~L~~L~l~~c 137 (185)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 44555555555
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=50.49 E-value=31 Score=19.33 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=5.4
Q ss_pred ccccCCceeee
Q 038808 146 SFPETLRKLSI 156 (185)
Q Consensus 146 ~l~~~L~~L~l 156 (185)
.+|.++++|.+
T Consensus 31 ~lP~sl~~L~f 41 (44)
T PF05725_consen 31 SLPNSLKSLSF 41 (44)
T ss_pred ccCCCceEEEe
Confidence 34445555554
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=44.22 E-value=19 Score=18.11 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.2
Q ss_pred CCCCEEEEcccccccccc
Q 038808 39 PLLDHLFLDRSCDSLKMF 56 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~l 56 (185)
.+|+.|++++ |+++.+
T Consensus 2 ~~L~~L~L~~--NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ--NKIKKI 17 (26)
T ss_pred CccCEEECCC--Ccccee
Confidence 3455555555 554443
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=26.42 E-value=48 Score=16.55 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=6.2
Q ss_pred CCCCEEeecCC
Q 038808 127 SFLTELFIQEC 137 (185)
Q Consensus 127 ~~L~~L~l~~c 137 (185)
++|++|++++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 34566666555
Done!