Query 038808
Match_columns 185
No_of_seqs 275 out of 1543
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 05:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6q_A Variable lymphocyte rec 99.6 3.8E-14 1.3E-18 111.8 16.0 142 34-184 56-214 (270)
2 4fcg_A Uncharacterized protein 99.6 4.4E-15 1.5E-19 120.7 10.6 141 37-184 102-286 (328)
3 4fcg_A Uncharacterized protein 99.6 5.7E-15 2E-19 120.0 10.7 141 36-183 147-309 (328)
4 3zyi_A Leucine-rich repeat-con 99.6 3.2E-14 1.1E-18 120.0 14.8 140 36-183 96-250 (452)
5 3zyj_A Leucine-rich repeat-con 99.6 2E-14 6.8E-19 120.8 12.7 136 37-179 86-236 (440)
6 1ozn_A Reticulon 4 receptor; N 99.6 7E-14 2.4E-18 110.8 14.3 102 38-144 31-145 (285)
7 3m19_A Variable lymphocyte rec 99.6 1.6E-13 5.3E-18 107.2 15.6 138 38-184 34-188 (251)
8 3zyj_A Leucine-rich repeat-con 99.6 4.2E-14 1.5E-18 118.8 12.9 143 34-184 107-288 (440)
9 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.4E-18 107.1 15.5 138 38-184 36-190 (270)
10 3zyi_A Leucine-rich repeat-con 99.5 1E-13 3.5E-18 116.8 13.3 143 34-184 118-299 (452)
11 2xwt_C Thyrotropin receptor; s 99.5 9.3E-14 3.2E-18 107.5 10.2 143 35-184 51-214 (239)
12 3rfs_A Internalin B, repeat mo 99.5 4.1E-13 1.4E-17 106.0 13.9 139 35-184 59-214 (272)
13 1ozn_A Reticulon 4 receptor; N 99.5 8.2E-13 2.8E-17 104.6 15.3 142 35-184 76-234 (285)
14 2xwt_C Thyrotropin receptor; s 99.5 1.2E-13 4.1E-18 106.9 10.2 142 34-184 75-235 (239)
15 1p9a_G Platelet glycoprotein I 99.5 6.2E-13 2.1E-17 106.3 13.5 137 38-183 30-180 (290)
16 4ezg_A Putative uncharacterize 99.5 2.4E-13 8.1E-18 102.5 10.0 137 36-184 41-190 (197)
17 2id5_A Lingo-1, leucine rich r 99.5 1.4E-12 4.9E-17 110.2 14.9 135 38-179 31-181 (477)
18 2z62_A TOLL-like receptor 4, v 99.4 1.3E-12 4.3E-17 103.1 12.9 143 34-184 47-233 (276)
19 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.8E-17 103.0 12.9 139 35-184 37-190 (272)
20 4ay9_X Follicle-stimulating ho 99.4 5.9E-13 2E-17 108.8 11.0 98 79-184 156-255 (350)
21 2id5_A Lingo-1, leucine rich r 99.4 1.7E-12 5.9E-17 109.7 13.7 144 34-184 75-257 (477)
22 2z80_A TOLL-like receptor 2, v 99.4 7.7E-13 2.6E-17 107.9 10.9 135 38-179 51-203 (353)
23 1xku_A Decorin; proteoglycan, 99.4 1.6E-12 5.3E-17 105.1 12.0 140 39-184 52-225 (330)
24 3e6j_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 97.8 13.9 116 36-158 37-168 (229)
25 1p9a_G Platelet glycoprotein I 99.4 4.4E-12 1.5E-16 101.3 14.2 139 34-184 50-204 (290)
26 2z80_A TOLL-like receptor 2, v 99.4 1.4E-12 4.8E-17 106.4 10.8 143 34-184 71-231 (353)
27 2xot_A Amphoterin-induced prot 99.4 4.1E-12 1.4E-16 104.3 13.0 140 37-184 37-198 (361)
28 2ft3_A Biglycan; proteoglycan, 99.4 3.9E-12 1.3E-16 102.9 12.3 92 38-137 53-157 (332)
29 3o6n_A APL1; leucine-rich repe 99.4 3.9E-12 1.3E-16 105.0 12.4 75 104-183 249-326 (390)
30 3m19_A Variable lymphocyte rec 99.4 1.3E-11 4.5E-16 96.2 14.4 120 34-160 54-190 (251)
31 2o6s_A Variable lymphocyte rec 99.4 1.5E-11 5E-16 93.1 14.0 117 36-159 25-158 (208)
32 2z7x_B TOLL-like receptor 1, v 99.4 1.2E-11 4.3E-16 105.4 15.1 139 36-184 321-477 (520)
33 2z66_A Variable lymphocyte rec 99.4 5E-12 1.7E-16 101.0 11.8 138 37-184 99-257 (306)
34 4glp_A Monocyte differentiatio 99.4 2.1E-12 7.3E-17 103.7 9.5 139 37-184 143-303 (310)
35 2z62_A TOLL-like receptor 4, v 99.4 8.3E-12 2.8E-16 98.4 12.7 132 38-177 27-176 (276)
36 2z66_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 101.8 10.1 104 75-184 124-232 (306)
37 3t6q_A CD180 antigen; protein- 99.4 1E-11 3.4E-16 107.7 13.6 101 32-137 271-386 (606)
38 2v9t_B SLIT homolog 2 protein 99.4 1.8E-11 6E-16 94.0 13.5 114 38-158 31-161 (220)
39 3o6n_A APL1; leucine-rich repe 99.3 6E-12 2E-16 103.8 11.4 98 35-137 65-175 (390)
40 4ay9_X Follicle-stimulating ho 99.3 8.5E-12 2.9E-16 101.9 11.9 142 38-184 29-211 (350)
41 1xku_A Decorin; proteoglycan, 99.3 6.4E-12 2.2E-16 101.5 10.7 138 34-184 95-272 (330)
42 3oja_B Anopheles plasmodium-re 99.3 8.9E-12 3E-16 108.6 12.2 75 104-183 255-332 (597)
43 3oja_B Anopheles plasmodium-re 99.3 6.1E-12 2.1E-16 109.6 11.2 98 35-137 71-181 (597)
44 1ziw_A TOLL-like receptor 3; i 99.3 2.6E-11 8.8E-16 106.6 15.1 139 37-184 428-593 (680)
45 2z63_A TOLL-like receptor 4, v 99.3 5.4E-12 1.8E-16 108.4 10.5 118 61-184 392-527 (570)
46 3vq2_A TLR4, TOLL-like recepto 99.3 1.2E-11 4.2E-16 107.2 12.5 136 39-183 376-529 (606)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.3E-11 1.5E-15 103.3 15.8 139 36-184 350-506 (562)
48 1h6u_A Internalin H; cell adhe 99.3 1.4E-11 4.9E-16 99.0 11.5 134 35-183 59-225 (308)
49 2v70_A SLIT-2, SLIT homolog 2 99.3 4.3E-11 1.5E-15 91.8 13.3 125 38-183 31-161 (220)
50 1h6u_A Internalin H; cell adhe 99.3 1.8E-11 6.1E-16 98.4 11.6 133 36-184 38-182 (308)
51 2z81_A CD282 antigen, TOLL-lik 99.3 1.5E-11 5.2E-16 105.3 11.7 141 35-182 46-203 (549)
52 1wwl_A Monocyte differentiatio 99.3 8.3E-12 2.8E-16 100.4 9.4 136 39-184 149-305 (312)
53 3vq2_A TLR4, TOLL-like recepto 99.3 1.2E-11 4.2E-16 107.2 10.9 142 34-184 394-554 (606)
54 2v9t_B SLIT homolog 2 protein 99.3 8.5E-11 2.9E-15 90.1 14.1 131 42-184 14-161 (220)
55 1xeu_A Internalin C; cellular 99.3 2.2E-11 7.4E-16 96.0 11.0 134 34-184 36-181 (263)
56 2z81_A CD282 antigen, TOLL-lik 99.3 1.7E-11 5.8E-16 105.0 11.0 139 38-184 25-181 (549)
57 4fmz_A Internalin; leucine ric 99.3 3.7E-11 1.3E-15 97.3 12.5 114 35-159 62-187 (347)
58 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.7E-16 93.3 8.6 116 34-159 61-191 (197)
59 4g8a_A TOLL-like receptor 4; l 99.3 4.9E-11 1.7E-15 103.1 13.8 130 39-176 52-199 (635)
60 2o6s_A Variable lymphocyte rec 99.3 2.8E-11 9.5E-16 91.6 10.8 126 32-167 45-183 (208)
61 1h6t_A Internalin B; cell adhe 99.3 2.9E-11 1E-15 96.5 11.2 134 35-184 64-209 (291)
62 4g8a_A TOLL-like receptor 4; l 99.3 3.7E-11 1.3E-15 103.8 12.7 143 35-184 416-576 (635)
63 3v47_A TOLL-like receptor 5B a 99.3 5.1E-11 1.7E-15 99.8 12.9 77 103-184 323-404 (455)
64 3rgz_A Protein brassinosteroid 99.3 1.2E-11 4.3E-16 110.6 9.5 140 38-184 393-547 (768)
65 3t6q_A CD180 antigen; protein- 99.3 6.3E-11 2.1E-15 102.7 13.6 137 38-183 32-187 (606)
66 2ft3_A Biglycan; proteoglycan, 99.3 2E-11 6.8E-16 98.7 9.5 135 35-184 98-273 (332)
67 3bz5_A Internalin-J, INLJ; leu 99.2 1.3E-10 4.4E-15 98.5 14.4 35 35-74 81-115 (457)
68 4fmz_A Internalin; leucine ric 99.2 3.4E-11 1.2E-15 97.5 10.3 133 37-183 175-319 (347)
69 2ast_B S-phase kinase-associat 99.2 1.4E-12 4.6E-17 105.3 1.5 144 36-184 90-281 (336)
70 1ogq_A PGIP-2, polygalacturona 99.2 4.8E-12 1.6E-16 101.9 4.7 142 35-183 72-229 (313)
71 3bz5_A Internalin-J, INLJ; leu 99.2 8.9E-11 3E-15 99.5 12.4 131 37-183 40-199 (457)
72 4eco_A Uncharacterized protein 99.2 9.8E-11 3.4E-15 102.9 12.6 138 39-184 402-575 (636)
73 3o53_A Protein LRIM1, AGAP0063 99.2 6.4E-12 2.2E-16 101.2 4.7 52 104-158 192-246 (317)
74 1ogq_A PGIP-2, polygalacturona 99.2 1.4E-11 5E-16 99.1 6.6 143 35-184 97-277 (313)
75 3oja_A Leucine-rich immune mol 99.2 3.1E-11 1.1E-15 103.0 8.9 141 34-183 53-222 (487)
76 3rgz_A Protein brassinosteroid 99.2 3.3E-11 1.1E-15 107.9 9.5 140 36-184 197-352 (768)
77 2z63_A TOLL-like receptor 4, v 99.2 8.7E-11 3E-15 100.8 11.7 94 39-137 28-134 (570)
78 1ziw_A TOLL-like receptor 3; i 99.2 9.7E-11 3.3E-15 102.9 12.2 136 39-183 25-179 (680)
79 2ast_B S-phase kinase-associat 99.2 1.4E-12 4.7E-17 105.2 0.2 96 39-140 70-181 (336)
80 3o53_A Protein LRIM1, AGAP0063 99.2 2.5E-11 8.4E-16 97.8 7.4 36 35-74 54-89 (317)
81 1h6t_A Internalin B; cell adhe 99.2 7.1E-11 2.4E-15 94.2 10.0 134 35-184 42-187 (291)
82 3v47_A TOLL-like receptor 5B a 99.2 1.3E-10 4.3E-15 97.4 12.0 116 38-159 29-164 (455)
83 1m9s_A Internalin B; cell inva 99.2 6.9E-11 2.4E-15 103.6 10.8 135 34-184 60-206 (605)
84 2v70_A SLIT-2, SLIT homolog 2 99.2 2.9E-10 9.8E-15 87.2 12.7 99 34-137 52-163 (220)
85 1wwl_A Monocyte differentiatio 99.2 7E-11 2.4E-15 94.9 9.3 139 37-183 93-261 (312)
86 3j0a_A TOLL-like receptor 5; m 99.2 4.2E-10 1.4E-14 101.7 15.1 123 35-160 44-185 (844)
87 3e6j_A Variable lymphocyte rec 99.2 3.7E-10 1.3E-14 87.0 11.9 101 34-140 59-172 (229)
88 2z7x_B TOLL-like receptor 1, v 99.2 9.8E-11 3.4E-15 99.8 9.5 114 39-161 21-150 (520)
89 2ell_A Acidic leucine-rich nuc 99.2 1.1E-10 3.8E-15 85.4 8.4 124 37-184 22-156 (168)
90 2je0_A Acidic leucine-rich nuc 99.2 4.6E-11 1.6E-15 85.7 6.2 124 37-184 15-149 (149)
91 1o6v_A Internalin A; bacterial 99.1 2.7E-10 9.4E-15 96.2 11.0 14 124-137 306-319 (466)
92 2xot_A Amphoterin-induced prot 99.1 8E-10 2.7E-14 90.6 13.4 132 41-184 20-172 (361)
93 1o6v_A Internalin A; bacterial 99.1 2.7E-10 9.4E-15 96.2 10.6 132 37-184 241-384 (466)
94 3cvr_A Invasion plasmid antige 99.1 7.1E-10 2.4E-14 96.6 13.4 104 66-184 121-239 (571)
95 4eco_A Uncharacterized protein 99.1 2.3E-11 7.9E-16 106.9 3.8 140 35-183 202-385 (636)
96 4ecn_A Leucine-rich repeat pro 99.1 4.7E-11 1.6E-15 108.6 5.7 140 35-184 444-628 (876)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 5.9E-10 2E-14 96.1 12.4 114 38-161 51-181 (562)
98 3j0a_A TOLL-like receptor 5; m 99.1 6.9E-10 2.3E-14 100.3 13.2 140 37-184 22-183 (844)
99 4ecn_A Leucine-rich repeat pro 99.1 9E-10 3.1E-14 100.2 13.4 113 66-184 674-815 (876)
100 1m9s_A Internalin B; cell inva 99.1 3.2E-10 1.1E-14 99.4 9.8 134 35-184 39-184 (605)
101 1jl5_A Outer protein YOPM; leu 99.1 2.2E-09 7.5E-14 90.8 13.8 95 76-184 152-246 (454)
102 3oja_A Leucine-rich immune mol 99.1 1.2E-10 4.2E-15 99.3 5.7 100 76-183 143-245 (487)
103 2wfh_A SLIT homolog 2 protein 99.1 1.8E-09 6.1E-14 81.2 11.2 102 38-159 30-136 (193)
104 2o6r_A Variable lymphocyte rec 99.0 4.1E-09 1.4E-13 77.6 12.7 106 36-160 25-135 (177)
105 3g06_A SSPH2 (leucine-rich rep 99.0 3.1E-09 1.1E-13 93.4 13.9 73 103-184 221-293 (622)
106 1w8a_A SLIT protein; signaling 99.0 1.6E-09 5.5E-14 81.2 10.5 103 38-159 28-136 (192)
107 4glp_A Monocyte differentiatio 99.0 6.5E-10 2.2E-14 89.1 8.2 72 39-114 91-180 (310)
108 2o6r_A Variable lymphocyte rec 99.0 6.2E-09 2.1E-13 76.6 12.3 120 41-184 9-133 (177)
109 1jl5_A Outer protein YOPM; leu 99.0 7.5E-09 2.5E-13 87.5 13.7 123 41-183 73-203 (454)
110 3g06_A SSPH2 (leucine-rich rep 99.0 1.6E-08 5.4E-13 88.9 15.5 90 38-144 60-157 (622)
111 4b8c_D Glucose-repressible alc 99.0 6.2E-10 2.1E-14 99.4 6.7 101 75-184 222-325 (727)
112 1a9n_A U2A', U2A'; complex (nu 99.0 1.1E-09 3.7E-14 80.8 6.5 124 36-183 16-148 (176)
113 3sb4_A Hypothetical leucine ri 99.0 5.8E-09 2E-13 84.2 11.3 96 76-179 225-326 (329)
114 1xeu_A Internalin C; cellular 98.9 4.2E-09 1.4E-13 82.8 9.8 115 34-160 58-183 (263)
115 2wfh_A SLIT homolog 2 protein 98.9 9.9E-09 3.4E-13 77.0 11.1 118 42-184 13-135 (193)
116 1w8a_A SLIT protein; signaling 98.9 8.8E-09 3E-13 77.1 10.5 88 35-139 50-138 (192)
117 1dce_A Protein (RAB geranylger 98.9 7.1E-11 2.4E-15 102.7 -1.3 99 77-184 441-542 (567)
118 3cvr_A Invasion plasmid antige 98.9 1.4E-08 4.7E-13 88.5 13.1 123 38-184 79-216 (571)
119 3sb4_A Hypothetical leucine ri 98.9 7.2E-09 2.4E-13 83.7 10.2 76 102-183 225-305 (329)
120 3g39_A Variable lymphocyte rec 98.8 2.5E-08 8.4E-13 73.3 9.8 98 40-159 10-112 (170)
121 2r9u_A Variable lymphocyte rec 98.8 3.3E-08 1.1E-12 73.0 10.0 102 41-165 14-120 (174)
122 2ell_A Acidic leucine-rich nuc 98.8 2.9E-08 9.8E-13 72.3 9.0 100 76-184 23-129 (168)
123 4b8c_D Glucose-repressible alc 98.8 6.8E-09 2.3E-13 92.7 5.8 97 34-137 219-326 (727)
124 1dce_A Protein (RAB geranylger 98.8 2E-08 6.7E-13 87.4 8.4 116 40-179 442-565 (567)
125 3g39_A Variable lymphocyte rec 98.7 7E-08 2.4E-12 70.9 10.0 84 38-138 29-113 (170)
126 2r9u_A Variable lymphocyte rec 98.7 1.4E-07 4.7E-12 69.6 11.1 89 38-144 32-121 (174)
127 1a9n_A U2A', U2A'; complex (nu 98.7 2.2E-08 7.7E-13 73.6 6.4 101 39-160 42-151 (176)
128 2je0_A Acidic leucine-rich nuc 98.7 3E-08 1E-12 70.8 6.7 100 76-184 16-122 (149)
129 2ca6_A RAN GTPase-activating p 98.6 2.8E-09 9.7E-14 87.7 -1.6 75 104-184 188-283 (386)
130 2p1m_B Transport inhibitor res 98.6 3.9E-09 1.3E-13 90.9 -1.0 137 35-179 62-240 (594)
131 4fdw_A Leucine rich hypothetic 98.6 7.3E-07 2.5E-11 74.3 12.4 95 33-136 174-280 (401)
132 2p1m_B Transport inhibitor res 98.5 1E-08 3.6E-13 88.2 0.3 32 150-183 290-322 (594)
133 2ca6_A RAN GTPase-activating p 98.5 3.9E-09 1.3E-13 86.8 -2.3 78 102-184 215-312 (386)
134 2ifg_A High affinity nerve gro 98.5 4.7E-07 1.6E-11 73.2 9.3 87 35-137 27-113 (347)
135 2ifg_A High affinity nerve gro 98.5 6E-07 2.1E-11 72.6 9.0 103 42-163 11-116 (347)
136 3goz_A Leucine-rich repeat-con 98.4 9.4E-08 3.2E-12 78.1 2.0 33 40-74 23-60 (362)
137 1z7x_W Ribonuclease inhibitor; 98.3 1.2E-08 4E-13 85.4 -5.0 138 36-184 25-208 (461)
138 3ogk_B Coronatine-insensitive 98.3 1.9E-07 6.5E-12 80.4 2.2 31 150-182 294-325 (592)
139 3ogk_B Coronatine-insensitive 98.3 3.7E-08 1.3E-12 84.9 -2.3 49 36-86 290-351 (592)
140 3goz_A Leucine-rich repeat-con 98.3 8.6E-08 2.9E-12 78.3 -0.1 10 128-137 197-206 (362)
141 4fdw_A Leucine rich hypothetic 98.3 1.4E-05 4.7E-10 66.5 12.8 131 38-179 202-350 (401)
142 3e4g_A ATP synthase subunit S, 98.2 4.4E-07 1.5E-11 67.4 2.3 88 40-141 62-153 (176)
143 1ds9_A Outer arm dynein; leuci 98.2 2.3E-08 8E-13 74.9 -4.9 119 37-179 46-179 (198)
144 1z7x_W Ribonuclease inhibitor; 98.2 1.3E-07 4.4E-12 79.0 -1.2 77 104-184 314-407 (461)
145 1ds9_A Outer arm dynein; leuci 98.1 5.1E-08 1.7E-12 73.0 -4.8 85 34-138 65-151 (198)
146 3e4g_A ATP synthase subunit S, 98.0 4.6E-06 1.6E-10 61.9 4.4 85 77-164 61-154 (176)
147 2ra8_A Uncharacterized protein 98.0 8.8E-06 3E-10 66.9 6.1 12 126-137 251-262 (362)
148 2ra8_A Uncharacterized protein 97.8 5.3E-06 1.8E-10 68.3 1.3 118 36-160 169-318 (362)
149 3un9_A NLR family member X1; l 97.6 4.6E-07 1.6E-11 74.8 -7.3 140 38-184 71-248 (372)
150 4gt6_A Cell surface protein; l 97.5 0.0039 1.3E-07 51.1 14.2 57 123-184 307-366 (394)
151 4fs7_A Uncharacterized protein 97.5 0.0017 5.9E-08 53.2 12.1 95 75-179 295-393 (394)
152 4fs7_A Uncharacterized protein 97.4 0.00081 2.8E-08 55.2 9.3 41 31-74 63-103 (394)
153 4h09_A Hypothetical leucine ri 97.3 0.0072 2.5E-07 49.0 13.8 54 123-179 282-338 (379)
154 4h09_A Hypothetical leucine ri 97.2 0.0058 2E-07 49.6 12.4 127 36-173 214-355 (379)
155 4gt6_A Cell surface protein; l 97.0 0.0066 2.3E-07 49.7 11.2 120 52-183 252-386 (394)
156 3un9_A NLR family member X1; l 96.9 2.7E-05 9.2E-10 64.1 -4.3 117 38-160 100-250 (372)
157 1io0_A Tropomodulin; LRR prote 96.1 0.001 3.6E-08 49.0 0.4 107 36-159 33-161 (185)
158 3rw6_A Nuclear RNA export fact 95.9 0.0041 1.4E-07 48.9 3.0 13 125-137 194-206 (267)
159 3rfe_A Platelet glycoprotein I 95.9 0.012 3.9E-07 41.0 4.8 42 114-159 18-65 (130)
160 3rw6_A Nuclear RNA export fact 95.7 0.0061 2.1E-07 47.9 2.9 82 37-135 168-259 (267)
161 3rfe_A Platelet glycoprotein I 93.9 0.063 2.2E-06 37.2 4.1 24 39-64 31-54 (130)
162 1io0_A Tropomodulin; LRR prote 90.2 0.088 3E-06 38.4 1.2 106 75-184 34-160 (185)
163 2lz0_A Uncharacterized protein 65.8 11 0.00039 24.3 4.8 28 34-64 15-42 (100)
164 1pgv_A TMD-1, tropomodulin TMD 51.1 2.5 8.6E-05 31.3 -0.6 103 76-183 40-165 (197)
165 2lz0_A Uncharacterized protein 45.6 13 0.00044 24.1 2.3 45 52-111 7-51 (100)
No 1
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.8e-14 Score=111.84 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=98.7
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.+|.+.|..+++|++|++++ .+++|++|+++++ .+..++...+. .
T Consensus 56 ~~~~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~ 131 (270)
T 2o6q_A 56 AFHRLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFD-S 131 (270)
T ss_dssp SSSSCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTT-T
T ss_pred HhcCCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhC-c
Confidence 345667777777777 567777776667777777777765 4667777777764 45666554432 3
Q ss_pred CCCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCCCCCCCchhhccCCCcc
Q 038808 102 TPNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCHKFRPRRDWRLHKLENL 176 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL 176 (185)
+++|++|+++++ .+..+|.. +..+++|++|++++| .+..++. . ++ +|+.|++.++ .+..++...+..+++|
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLT-ELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCC-CcCEEECCCC-cCCcCCHHHhccccCC
Confidence 557888888775 46666654 677888888888887 6666665 2 34 8888888775 5677776667888888
Q ss_pred cccccccC
Q 038808 177 RSLINIED 184 (185)
Q Consensus 177 ~~L~~l~~ 184 (185)
+.| ++++
T Consensus 208 ~~L-~l~~ 214 (270)
T 2o6q_A 208 KML-QLQE 214 (270)
T ss_dssp CEE-ECCS
T ss_pred CEE-EecC
Confidence 888 7754
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=4.4e-15 Score=120.71 Aligned_cols=141 Identities=23% Similarity=0.389 Sum_probs=81.8
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCC--------
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERG-------- 97 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~-------- 97 (185)
.+++|++|++++ ++++.+|. .+..+++|++|++++ .+++|++|++++|..+..+|...
T Consensus 102 ~l~~L~~L~L~~--n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 102 RLSHLQHMTIDA--AGLMELPD-TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGTTCSEEEEES--SCCCCCCS-CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hCCCCCEEECCC--CCccchhH-HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 466777777776 45666664 456666667776665 45566666666665555554422
Q ss_pred ---CC-------------------CCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCc
Q 038808 98 ---LP-------------------LATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLR 152 (185)
Q Consensus 98 ---~~-------------------~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~ 152 (185)
++ ..+++|++|++++| .+..+|..++.+++|++|++++|.....+|. +++ +|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-CCC
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCC-CCC
Confidence 11 01334555555443 2444555555566666666666655555554 233 677
Q ss_pred eeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 153 KLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 153 ~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.|++.+|+....+|. .+.++++|++| ++++
T Consensus 257 ~L~L~~n~~~~~~p~-~~~~l~~L~~L-~L~~ 286 (328)
T 4fcg_A 257 RLILKDCSNLLTLPL-DIHRLTQLEKL-DLRG 286 (328)
T ss_dssp EEECTTCTTCCBCCT-TGGGCTTCCEE-ECTT
T ss_pred EEECCCCCchhhcch-hhhcCCCCCEE-eCCC
Confidence 777766666666655 46677777777 6654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=5.7e-15 Score=120.04 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=108.8
Q ss_pred CCCCCCCEEEEccccccccccCCCC--------CCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRP--------IPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPER 96 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~--------~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~ 96 (185)
..+++|++|++++ |+.+..+|... +..+++|++|++++ .+++|++|++++| .+..+|..
T Consensus 147 ~~l~~L~~L~L~~-n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~ 224 (328)
T 4fcg_A 147 ASLNRLRELSIRA-CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA 224 (328)
T ss_dssp GGCTTCCEEEEEE-ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG
T ss_pred hcCcCCCEEECCC-CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh
Confidence 4566666777766 66666566522 22356777777765 5677888888875 45556553
Q ss_pred CCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCC
Q 038808 97 GLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKL 173 (185)
Q Consensus 97 ~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l 173 (185)
.. .+++|++|++++|+....+|..++.+++|++|++++|..+..+|. .++ +|+.|++.+|+.+..+|. ++.++
T Consensus 225 l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~-~l~~L 300 (328)
T 4fcg_A 225 IH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPS-LIAQL 300 (328)
T ss_dssp GG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCG-GGGGS
T ss_pred hc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccH-HHhhc
Confidence 22 256999999999998999999999999999999999988999987 455 999999999998899987 68999
Q ss_pred Cccccccccc
Q 038808 174 ENLRSLINIE 183 (185)
Q Consensus 174 ~sL~~L~~l~ 183 (185)
++|+.+ .+.
T Consensus 301 ~~L~~l-~l~ 309 (328)
T 4fcg_A 301 PANCII-LVP 309 (328)
T ss_dssp CTTCEE-ECC
T ss_pred cCceEE-eCC
Confidence 999888 664
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=3.2e-14 Score=119.96 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
..+++|++|++++ ++++.++.+.|.++++|++|++++ .+++|++|+++++ .+..++...+. .++
T Consensus 96 ~~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~ 171 (452)
T 3zyi_A 96 RHLHHLEVLQLGR--NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFN-RVP 171 (452)
T ss_dssp TTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTT-TCT
T ss_pred CCCCCCCEEECCC--CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHh-cCC
Confidence 4455555555555 455555555555555666665554 3556666666653 35555544333 345
Q ss_pred CccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 104 NLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
+|+.|++.+|+.++.++. .+..+++|++|++++| .+..+|. .++ +|+.|++.++ .+..+++..+.++++|++|
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L- 247 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLV-GLEELEMSGN-HFPEIRPGSFHGLSSLKKL- 247 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCT-TCCEEECTTS-CCSEECGGGGTTCTTCCEE-
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccc-cccEEECcCC-cCcccCcccccCccCCCEE-
Confidence 677777766666666654 3566777777777776 5666655 333 6666666553 3444433455555555555
Q ss_pred ccc
Q 038808 181 NIE 183 (185)
Q Consensus 181 ~l~ 183 (185)
+++
T Consensus 248 ~L~ 250 (452)
T 3zyi_A 248 WVM 250 (452)
T ss_dssp ECT
T ss_pred EeC
Confidence 543
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=120.84 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=61.8
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
.+++|++|++++ ++++.++.+.|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++
T Consensus 86 ~l~~L~~L~Ls~--n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-~l~~ 161 (440)
T 3zyj_A 86 HLRHLEILQLSR--NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFN-RIPS 161 (440)
T ss_dssp SCSSCCEEECCS--SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTT-TCTT
T ss_pred CCCCCCEEECCC--CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhh-hCcc
Confidence 344444444444 334444433344444444444443 2344444444442 23344333222 2345
Q ss_pred ccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 105 LKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
|+.|++.+|+.+..++. .+..+++|++|++++| .+..+|. .++ +|+.|++.++ .+..+++..+.++++|++|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLI-KLDELDLSGN-HLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCS-SCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCc-ccCEEECCCC-ccCccChhhhccCccCCEE
Confidence 55555555555554443 2455556666666555 4555554 223 5555555443 3333333344444444444
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=7e-14 Score=110.83 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.++|++|++++ ++++.++.+.|..+++|++|++++ .+++|++|+++++..+..++...+. .+++|
T Consensus 31 ~~~l~~L~l~~--n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~-~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH-GLGRL 107 (285)
T ss_dssp CTTCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT-TCTTC
T ss_pred CCCceEEEeeC--CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc-CCcCC
Confidence 45666666666 566666655566666666666655 4566666666665445555433332 23456
Q ss_pred cEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCC
Q 038808 106 KLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTP 144 (185)
Q Consensus 106 ~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp 144 (185)
++|++.++. +..+ |..+..+++|++|++++| .+..++
T Consensus 108 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 145 (285)
T 1ozn_A 108 HTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALP 145 (285)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccC
Confidence 666655543 2222 333445555555555554 333333
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.6e-13 Score=107.17 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=112.1
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.+++++|++++ ++++.++...|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++|
T Consensus 34 ~~~l~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD-HLTQL 109 (251)
T ss_dssp CTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-TCTTC
T ss_pred CCCCCEEEccC--CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhc-ccCCC
Confidence 46899999998 688888887888999999999987 5789999999885 57777765543 35699
Q ss_pred cEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 106 KLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
++|+++++ .++.+|.. +..+++|++|++++| .+..+|. . ++ +|+.|++.++ .+..++...+.++++|++|
T Consensus 110 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L- 184 (251)
T 3m19_A 110 DKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLT-NLQTLSLSTN-QLQSVPHGAFDRLGKLQTI- 184 (251)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCCEE-
T ss_pred CEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCc-CCCEEECCCC-cCCccCHHHHhCCCCCCEE-
Confidence 99999885 67777765 578999999999998 7777776 2 34 8999999774 6777777678899999999
Q ss_pred cccC
Q 038808 181 NIED 184 (185)
Q Consensus 181 ~l~~ 184 (185)
++++
T Consensus 185 ~l~~ 188 (251)
T 3m19_A 185 TLFG 188 (251)
T ss_dssp ECCS
T ss_pred EeeC
Confidence 8765
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=118.81 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=91.0
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.+|.+.|..+++|++|++++ .+++|++|++++|+.+..++.+.+. .
T Consensus 107 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~ 183 (440)
T 3zyj_A 107 AFNGLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-G 183 (440)
T ss_dssp GGTTCSSCCEEECCS--SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-T
T ss_pred hccCCccCCEEECCC--CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-c
Confidence 456788888999888 688888887788888888888877 5778888888887777777765543 3
Q ss_pred CCCccEEEeecCcCCccccccCCCCCCCCEEeecCCC-----------------------CCccCCC----ccccCCcee
Q 038808 102 TPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECP-----------------------KLVSTPG----SFPETLRKL 154 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~-----------------------~L~~lp~----~l~~~L~~L 154 (185)
+++|+.|++++| +++.+|. +..+++|++|++++|. .+..++. +++ +|+.|
T Consensus 184 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L 260 (440)
T 3zyj_A 184 LSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEI 260 (440)
T ss_dssp CSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEE
T ss_pred ccccCeecCCCC-cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEE
Confidence 456777776654 3444442 3444555555555441 3333332 123 56666
Q ss_pred eeecCCCCCCCchhhccCCCcccccccccC
Q 038808 155 SIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 155 ~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++.++ .+..++...+..+++|+.| ++++
T Consensus 261 ~L~~N-~l~~~~~~~~~~l~~L~~L-~L~~ 288 (440)
T 3zyj_A 261 NLAHN-NLTLLPHDLFTPLHHLERI-HLHH 288 (440)
T ss_dssp ECTTS-CCCCCCTTTTSSCTTCCEE-ECCS
T ss_pred ECCCC-CCCccChhHhccccCCCEE-EcCC
Confidence 66553 4555555556666666666 6543
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.4e-13 Score=107.14 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=113.8
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.+++++|++++ ++++.++...|..+++|++|++++ .+++|++|+++++ .+..++...+. .+++|
T Consensus 36 ~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQS--NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD-QLVNL 111 (270)
T ss_dssp CTTCSEEECCS--SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTT-TCSSC
T ss_pred CCCCCEEECcC--CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcc-cccCC
Confidence 46899999999 689999988899999999999987 5789999999985 57777765543 35699
Q ss_pred cEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 106 KLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
++|++.++ .+..++. .+..+++|++|++++| .+..+|. .++ +|+.|++.++ .+..++...+.++++|++|
T Consensus 112 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L- 186 (270)
T 2o6q_A 112 AELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT-SLKELRLYNN-QLKRVPEGAFDKLTELKTL- 186 (270)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCCEE-
T ss_pred CEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCc-ccceeEecCC-cCcEeChhHhccCCCcCEE-
Confidence 99999885 4666554 5789999999999999 7888876 244 9999999875 5777777678999999999
Q ss_pred cccC
Q 038808 181 NIED 184 (185)
Q Consensus 181 ~l~~ 184 (185)
++++
T Consensus 187 ~L~~ 190 (270)
T 2o6q_A 187 KLDN 190 (270)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8864
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.53 E-value=1e-13 Score=116.83 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=95.8
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.+|.+.|..+++|++|++++ .+++|++|++++|+.+..++.+.+. .
T Consensus 118 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~ 194 (452)
T 3zyi_A 118 AFNGLASLNTLELFD--NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-G 194 (452)
T ss_dssp TTTTCTTCCEEECCS--SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-T
T ss_pred hccCcccCCEEECCC--CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-C
Confidence 456788899999988 678888887788888888888877 5788888888888878777765443 3
Q ss_pred CCCccEEEeecCcCCccc-----------------------cccCCCCCCCCEEeecCCCCCccCCC----ccccCCcee
Q 038808 102 TPNLKLFVILDWKILEVI-----------------------PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKL 154 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~l-----------------------p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L 154 (185)
+++|+.|++++| ++..+ |..+..+++|++|++++| .+..++. +++ +|+.|
T Consensus 195 l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~-~L~~L 271 (452)
T 3zyi_A 195 LFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLA-SLVEL 271 (452)
T ss_dssp CTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCT-TCCEE
T ss_pred CCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCC-CCCEE
Confidence 446666666554 23333 334555566666666655 4444333 233 67777
Q ss_pred eeecCCCCCCCchhhccCCCcccccccccC
Q 038808 155 SIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 155 ~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++.++ .+..++...+..+++|++| ++++
T Consensus 272 ~L~~N-~l~~~~~~~~~~l~~L~~L-~L~~ 299 (452)
T 3zyi_A 272 NLAHN-NLSSLPHDLFTPLRYLVEL-HLHH 299 (452)
T ss_dssp ECCSS-CCSCCCTTSSTTCTTCCEE-ECCS
T ss_pred ECCCC-cCCccChHHhccccCCCEE-EccC
Confidence 77664 5666666566777777777 6654
No 11
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=9.3e-14 Score=107.53 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
+..+++|++|++++ +..++.++.+.|.++++|++|++++ .+++|++|+++++ .+..+|. +. .
T Consensus 51 ~~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~--~~-~ 125 (239)
T 2xwt_C 51 FSNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD--LT-K 125 (239)
T ss_dssp TTTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC--CT-T
T ss_pred ccCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc--cc-c
Confidence 44556666666666 3236666655555666666666642 4556666666654 2444443 11 1
Q ss_pred CCCcc---EEEeecCcCCcccccc-CCCCCCCC-EEeecCCCCCccCCC-cc-ccCCceeeeecCCCCCCCchhhccCC-
Q 038808 102 TPNLK---LFVILDWKILEVIPNL-RHSLSFLT-ELFIQECPKLVSTPG-SF-PETLRKLSIVSCHKFRPRRDWRLHKL- 173 (185)
Q Consensus 102 ~~~L~---~L~l~~c~~L~~lp~~-~~~l~~L~-~L~l~~c~~L~~lp~-~l-~~~L~~L~l~~c~~l~~~~~~~l~~l- 173 (185)
+++|+ .|++++++.++.+|.. +..+++|+ +|+++++ .++.+|. .+ ..+|+.|++.++..+..++...+.++
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 23444 6666655455555543 55666677 7777666 5555655 11 12667777766544656655556666
Q ss_pred CcccccccccC
Q 038808 174 ENLRSLINIED 184 (185)
Q Consensus 174 ~sL~~L~~l~~ 184 (185)
++|++| ++++
T Consensus 205 ~~L~~L-~l~~ 214 (239)
T 2xwt_C 205 SGPSLL-DVSQ 214 (239)
T ss_dssp BCCSEE-ECTT
T ss_pred cCCcEE-ECCC
Confidence 667666 6543
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=4.1e-13 Score=106.04 Aligned_cols=139 Identities=21% Similarity=0.261 Sum_probs=105.5
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|++|++++ ++++.++. +..+++|++|++++ .+++|++|++++| .+..++...+. .+
T Consensus 59 l~~l~~L~~L~l~~--n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l 132 (272)
T 3rfs_A 59 IQYLPNVRYLALGG--NKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFD-KL 132 (272)
T ss_dssp GGGCTTCCEEECTT--SCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC
T ss_pred cccCCCCcEEECCC--CCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhc-cC
Confidence 45688899999988 56777653 77788889998887 5788999999886 46666665443 35
Q ss_pred CCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 103 PNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
++|++|++++| .+..+|.. +..+++|++|++++| .+..++. .++ +|+.|++.++ .+..+++..+.++++|+
T Consensus 133 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 133 TNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLT-QLKDLRLYQN-QLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCc-cCCEEECCCC-cCCccCHHHHhCCcCCC
Confidence 68999999886 56666654 578899999999998 6777765 234 8999999775 56667666678899999
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
+| ++++
T Consensus 209 ~L-~l~~ 214 (272)
T 3rfs_A 209 YI-WLHD 214 (272)
T ss_dssp EE-ECCS
T ss_pred EE-EccC
Confidence 88 8764
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=8.2e-13 Score=104.63 Aligned_cols=142 Identities=16% Similarity=0.242 Sum_probs=86.3
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|++|++++ +..++.+++..+..+++|++|++++ .+++|++|+++++ .+..++...+. .+
T Consensus 76 ~~~l~~L~~L~l~~-n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l 152 (285)
T 1ozn_A 76 FTGLALLEQLDLSD-NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR-DL 152 (285)
T ss_dssp TTTCTTCCEEECCS-CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC
T ss_pred cCCccCCCEEeCCC-CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhc-cC
Confidence 34456666666665 3335555555566666666666655 3566666666664 35555543332 24
Q ss_pred CCccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccC-CC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 103 PNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVST-PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~l-p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
++|+.|+++++ .++.+|. .+..+++|++|++++| .+..+ |. .++ +|+.|++.++ .+..++...+..+++|+
T Consensus 153 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 153 GNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLG-RLMTLYLFAN-NLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT-TCCEEECCSS-CCSCCCHHHHTTCTTCC
T ss_pred CCccEEECCCC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccCcc-cccEeeCCCC-cCCcCCHHHcccCcccC
Confidence 57777777664 4555554 3667777777777777 44444 32 234 7888888764 56666665677788888
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
+| ++++
T Consensus 229 ~L-~l~~ 234 (285)
T 1ozn_A 229 YL-RLND 234 (285)
T ss_dssp EE-ECCS
T ss_pred EE-eccC
Confidence 87 7754
No 14
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=1.2e-13 Score=106.86 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=115.5
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCc---EEeeeCCCCCcccCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLA---ILDIKQCPKIVSFPERGLPL 100 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~---~L~l~~c~~l~~l~~~~~~~ 100 (185)
.+..+++|++|++++ |++++.+|.+.|..+++|++|++++ .+++|+ +|++++++.+..++...+.
T Consensus 75 ~f~~l~~L~~L~l~~-~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~- 152 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRN-TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ- 152 (239)
T ss_dssp TEESCTTCCEEEEEE-ETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT-
T ss_pred HcCCCcCCcEEECCC-CCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCccccc-
Confidence 456789999999998 8999999988899999999999987 456666 9999998789999887664
Q ss_pred CCCCcc-EEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC----cc-ccCCceeeeecCCCCCCCchhhccCCC
Q 038808 101 ATPNLK-LFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG----SF-PETLRKLSIVSCHKFRPRRDWRLHKLE 174 (185)
Q Consensus 101 ~~~~L~-~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l-~~~L~~L~l~~c~~l~~~~~~~l~~l~ 174 (185)
.+++|+ .|+++++ .++.+|......++|++|++++|+.++.+|. ++ + +|+.|++.+ +.+..++.. .++
T Consensus 153 ~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~-N~l~~l~~~---~~~ 226 (239)
T 2xwt_C 153 GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQ-TSVTALPSK---GLE 226 (239)
T ss_dssp TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB-CCSEEECTT-CCCCCCCCT---TCT
T ss_pred chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc-CCcEEECCC-CccccCChh---Hhc
Confidence 466999 9999875 5778887655558999999999976888876 34 4 999999987 567777764 567
Q ss_pred cccccccccC
Q 038808 175 NLRSLINIED 184 (185)
Q Consensus 175 sL~~L~~l~~ 184 (185)
+|++| .+.+
T Consensus 227 ~L~~L-~l~~ 235 (239)
T 2xwt_C 227 HLKEL-IARN 235 (239)
T ss_dssp TCSEE-ECTT
T ss_pred cCcee-eccC
Confidence 77777 7665
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=6.2e-13 Score=106.30 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccE
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKL 107 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~ 107 (185)
.+++++|++++ ++++.++...|..+++|+.|++++ .+++|++|+++++ .+..+|..... +++|+.
T Consensus 30 ~~~l~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--l~~L~~ 104 (290)
T 1p9a_G 30 PKDTTILHLSE--NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQT--LPALTV 104 (290)
T ss_dssp CTTCCEEECTT--SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS-CCSSCCCCTTT--CTTCCE
T ss_pred CCCCCEEEcCC--CcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC-cCCcCchhhcc--CCCCCE
Confidence 35666666666 456665555566666666666655 4556666666653 44455442211 345666
Q ss_pred EEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 108 FVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 108 L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
|+++++ +++.+| ..+..+++|++|++++| .+..+|. .+. .+|+.|++.++ .+..++...+.++++|++| +++
T Consensus 105 L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L-~L~ 180 (290)
T 1p9a_G 105 LDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTL-LLQ 180 (290)
T ss_dssp EECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEE-ECC
T ss_pred EECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEE-ECC
Confidence 666553 344444 33555566666666555 4445544 111 15555555442 3445554444555555555 443
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=2.4e-13 Score=102.50 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=109.2
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcc-cCCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVS-FPERGLPLATPN 104 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~ 104 (185)
..+++|++|++++ ++++.+|. +..+++|++|++++ .+++|++|++++| .+.. .+.. +. .+++
T Consensus 41 ~~l~~L~~L~l~~--n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~-~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLAN--INVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPN-LS-GLTS 113 (197)
T ss_dssp HHHHTCCEEEEES--SCCSCCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCC-CT-TCTT
T ss_pred hhcCCccEEeccC--CCccChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChh-hc-CCCC
Confidence 5678999999998 68888883 78889999999987 7899999999996 4554 3332 22 2569
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
|+.|++++|.--...|..+..+++|++|++++|..+..+|. .++ +|+.|++.+| .+..++ .+.++++|++| ++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~-~L~~L~l~~n-~i~~~~--~l~~l~~L~~L-~l 188 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP-ELKSLNIQFD-GVHDYR--GIEDFPKLNQL-YA 188 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCS-SCCEEECTTB-CCCCCT--TGGGCSSCCEE-EE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCC-CCCEEECCCC-CCcChH--HhccCCCCCEE-Ee
Confidence 99999998754445677889999999999999965888876 456 9999999886 466665 67889999999 88
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 189 ~~ 190 (197)
T 4ezg_A 189 FS 190 (197)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.4e-12 Score=110.18 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.++++.|++++ ++++.++...|.++++|++|++++ .+++|++|+++++ .+..++.+.+. .+++|
T Consensus 31 ~~~l~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGK--NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT-GLSNL 106 (477)
T ss_dssp CTTCSEEECCS--SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST-TCTTC
T ss_pred CCCCcEEECCC--CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc-CCCCC
Confidence 34666666666 566666655666666666666665 4566666666653 35555544332 24466
Q ss_pred cEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 106 KLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
++|+++++.-....|..+..+++|++|+++++ .+..++. +++ +|+.|++.+| .+..++...+.++++|+.|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~-~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLN-SLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCT-TCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCC-CCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence 66666554322223344555556666666555 3333322 223 5555555443 3444443344444444444
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=1.3e-12 Score=103.08 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=97.5
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.++.+.|..+++|++|++++ .+++|++|+++++ .+..++...+. .
T Consensus 47 ~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~ 122 (276)
T 2z62_A 47 SFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG-H 122 (276)
T ss_dssp TTTTCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCT-T
T ss_pred HhccccCCcEEECCC--CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcc-c
Confidence 455677888888887 477777776777778888888876 5677888888775 45555443332 3
Q ss_pred CCCccEEEeecCcCCcc--ccccCCCCCCCCEEeecCCCCCccCCC-cc-----------------------------cc
Q 038808 102 TPNLKLFVILDWKILEV--IPNLRHSLSFLTELFIQECPKLVSTPG-SF-----------------------------PE 149 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~L~~lp~-~l-----------------------------~~ 149 (185)
+++|++|+++++. +.. +|..+..+++|++|++++| .+..++. .+ ..
T Consensus 123 l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~ 200 (276)
T 2z62_A 123 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (276)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC
T ss_pred CCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC
Confidence 4588888887754 444 5777788888888888877 4443322 10 01
Q ss_pred CCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 150 TLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+|+.|++.++ .+..++.+.+.++++|++| ++++
T Consensus 201 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L-~l~~ 233 (276)
T 2z62_A 201 RLKELALDTN-QLKSVPDGIFDRLTSLQKI-WLHT 233 (276)
T ss_dssp CEEEEECCSS-CCSCCCTTTTTTCCSCCEE-ECCS
T ss_pred cccEEECCCC-ceeecCHhHhcccccccEE-EccC
Confidence 5777777664 4777777667888888888 8764
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.4e-12 Score=102.95 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=112.7
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
...+++|+.|++.+ +.++.++. +..+++|++|++++ .+++|++|++++| .+..++...+. .+++
T Consensus 37 ~~~l~~L~~L~l~~--~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANN--SDIKSVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFD-KLTN 110 (272)
T ss_dssp HHHHTTCCEEECTT--SCCCCCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTT-TCTT
T ss_pred cccccceeeeeeCC--CCcccccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhc-CCcC
Confidence 35688999999998 57877775 77889999999987 6889999999986 57777765543 3569
Q ss_pred ccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 105 LKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
|++|++++|. +..++.. ++.+++|++|++++| .+..++. . ++ +|+.|++.+| .+..++...+.++++|++|
T Consensus 111 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLT-NLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCc-cCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 9999998864 6666554 789999999999999 7777776 2 34 9999999886 5777777678899999999
Q ss_pred ccccC
Q 038808 180 INIED 184 (185)
Q Consensus 180 ~~l~~ 184 (185)
++++
T Consensus 187 -~L~~ 190 (272)
T 3rfs_A 187 -RLYQ 190 (272)
T ss_dssp -ECCS
T ss_pred -ECCC
Confidence 8865
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=5.9e-13 Score=108.80 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=67.2
Q ss_pred CcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-ccccCCceeee
Q 038808 79 LAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-SFPETLRKLSI 156 (185)
Q Consensus 79 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~l~~~L~~L~l 156 (185)
++.|++++ +.++.++.+.+. ..+|+.+.+.+++.++.+|.. +..+++|++|+++++ .++.+|. ++. +|++|.+
T Consensus 156 l~~L~L~~-N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~-~L~~L~~ 230 (350)
T 4ay9_X 156 SVILWLNK-NGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE-NLKKLRA 230 (350)
T ss_dssp CEEEECCS-SCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT-TCCEEEC
T ss_pred hhhhcccc-ccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc-cchHhhh
Confidence 34444443 234455544443 346666777666777777754 577888888888888 7888887 555 8888888
Q ss_pred ecCCCCCCCchhhccCCCcccccccccC
Q 038808 157 VSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 157 ~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.++.+++.+| .+..+++|+.+ ++.+
T Consensus 231 l~~~~l~~lP--~l~~l~~L~~l-~l~~ 255 (350)
T 4ay9_X 231 RSTYNLKKLP--TLEKLVALMEA-SLTY 255 (350)
T ss_dssp TTCTTCCCCC--CTTTCCSCCEE-ECSC
T ss_pred ccCCCcCcCC--CchhCcChhhC-cCCC
Confidence 8888888887 46778888877 6643
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=109.70 Aligned_cols=144 Identities=24% Similarity=0.260 Sum_probs=81.1
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.+|.+.|.++++|++|++++ .+++|++|+++++ .+..++...+. .
T Consensus 75 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~ 150 (477)
T 2id5_A 75 AFNNLFNLRTLGLRS--NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFS-G 150 (477)
T ss_dssp TTTTCTTCCEEECCS--SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSST-T
T ss_pred hhhCCccCCEEECCC--CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhcc-C
Confidence 345677777777777 567777776677777777777765 4566677776663 34444433332 2
Q ss_pred CCCccEEEeecCcCCcccc-------------------------ccCCCCCCCCEEeecCCCCCccCCC-cc-ccCCcee
Q 038808 102 TPNLKLFVILDWKILEVIP-------------------------NLRHSLSFLTELFIQECPKLVSTPG-SF-PETLRKL 154 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp-------------------------~~~~~l~~L~~L~l~~c~~L~~lp~-~l-~~~L~~L 154 (185)
+++|+.|++.+|. +..+| ..+..+++|++|++++|+.+..+|. .+ ..+|+.|
T Consensus 151 l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 151 LNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 3455555555432 22222 2344555566666665555555544 11 1156666
Q ss_pred eeecCCCCCCCchhhccCCCcccccccccC
Q 038808 155 SIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 155 ~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++.+| .+..++...+.++++|++| ++++
T Consensus 230 ~l~~n-~l~~~~~~~~~~l~~L~~L-~Ls~ 257 (477)
T 2id5_A 230 SITHC-NLTAVPYLAVRHLVYLRFL-NLSY 257 (477)
T ss_dssp EEESS-CCCSCCHHHHTTCTTCCEE-ECCS
T ss_pred ECcCC-cccccCHHHhcCccccCee-ECCC
Confidence 66554 3555555556666666666 5543
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.43 E-value=7.7e-13 Score=107.93 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
+++|++|++++ ++++.+|.+.|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++|
T Consensus 51 ~~~L~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSN--NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFK-PLSSL 126 (353)
T ss_dssp CTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHT-TCTTC
T ss_pred cccCcEEECCC--CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhC-CCccC
Confidence 34566666665 455555555555556666666554 3455555555553 34444432111 12355
Q ss_pred cEEEeecCcCCccccc--cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 106 KLFVILDWKILEVIPN--LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~--~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
++|+++++ .++.+|. .+..+++|++|++++|..+..++. +++ +|+.|++.++. +....+..+.++++|++|
T Consensus 127 ~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 127 TFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASD-LQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETT-CCEECTTTTTTCSEEEEE
T ss_pred CEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCC-cCccCHHHHhccccCCee
Confidence 55555543 3444444 345555555555555544444432 122 55555554432 322222234444444444
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1.6e-12 Score=105.06 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCC-------
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLP------- 99 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~------- 99 (185)
++|++|++++ ++++.++.+.|..+++|++|++++ .+++|++|+++++ .+..+|...++
T Consensus 52 ~~l~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEEC
T ss_pred CCCeEEECCC--CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhcccccEEEC
Confidence 4555555555 355555554555555555555554 3455555555543 24444433322
Q ss_pred -------------CCCCCccEEEeecCcCC--ccccccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCC
Q 038808 100 -------------LATPNLKLFVILDWKIL--EVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRP 164 (185)
Q Consensus 100 -------------~~~~~L~~L~l~~c~~L--~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~ 164 (185)
..+++|+.|+++++.-- ...+..+..+++|++|++++| .+..+|..++.+|+.|++.++ .+..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n-~l~~ 206 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN-KITK 206 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTS-CCCE
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCC-cCCc
Confidence 01234555555443211 122334555666666666666 555555522236666666554 2444
Q ss_pred CchhhccCCCcccccccccC
Q 038808 165 RRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 165 ~~~~~l~~l~sL~~L~~l~~ 184 (185)
++...+.++++|++| ++++
T Consensus 207 ~~~~~~~~l~~L~~L-~Ls~ 225 (330)
T 1xku_A 207 VDAASLKGLNNLAKL-GLSF 225 (330)
T ss_dssp ECTGGGTTCTTCCEE-ECCS
T ss_pred cCHHHhcCCCCCCEE-ECCC
Confidence 433355666666666 5543
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=4.5e-12 Score=97.80 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
...++|++|++++ ++++.++++.|..+++|+.|++++ .+++|+.|+++++ .+..++...+. .++
T Consensus 37 ~~~~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~ 112 (229)
T 3e6j_A 37 GIPTNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD-RLV 112 (229)
T ss_dssp CCCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCT
T ss_pred CCCCCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhC-cch
Confidence 3458999999999 788888777888876666666554 3455555555553 44444443322 233
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeec
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVS 158 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~ 158 (185)
+|+.|+++++ ++..+|..+..+++|++|+++++ .+..++. .++ +|+.|++.+
T Consensus 113 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLS-SLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCT-TCCEEECTT
T ss_pred hhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCC-CCCEEEeeC
Confidence 5555555442 34455555555555555555555 4444443 122 555555544
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=4.4e-12 Score=101.33 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=110.8
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
.+..+++|++|++++ ++++.++. ...+++|++|++++ .+++|++|+++++ .+..++.+.+. .+
T Consensus 50 ~~~~l~~L~~L~L~~--n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~-~l 123 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDR--AELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALR-GL 123 (290)
T ss_dssp GGTTCTTCCEEECTT--SCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTT-TC
T ss_pred HhhcCCCCCEEECCC--CccCcccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHc-CC
Confidence 356789999999998 78888887 36778999999987 5789999999985 67788766554 46
Q ss_pred CCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 103 PNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
++|+.|+++++ ++..+|.. +..+++|+.|++++| .++.+|. . ++ +|+.|++.+ +.+..+|. ++....+|+
T Consensus 124 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~-~L~~L~L~~-N~l~~ip~-~~~~~~~L~ 198 (290)
T 1p9a_G 124 GELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLE-NLDTLLLQE-NSLYTIPK-GFFGSHLLP 198 (290)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCT-TCCEEECCS-SCCCCCCT-TTTTTCCCS
T ss_pred CCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcC-CCCEEECCC-CcCCccCh-hhcccccCC
Confidence 69999999885 57777654 578999999999998 7888887 2 34 899999977 46777876 466777888
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
.+ ++++
T Consensus 199 ~l-~L~~ 204 (290)
T 1p9a_G 199 FA-FLHG 204 (290)
T ss_dssp EE-ECCS
T ss_pred eE-EeCC
Confidence 88 7764
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=106.37 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=115.9
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCC-CCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPE-RGLPL 100 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~-~~~~~ 100 (185)
.+..+++|++|++++ ++++.++.+.|.++++|++|++++ .+++|++|+++++ .+..++. ..+.
T Consensus 71 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~- 146 (353)
T 2z80_A 71 DLQRCVNLQALVLTS--NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFS- 146 (353)
T ss_dssp TTTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCT-
T ss_pred HhccCCCCCEEECCC--CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhc-
Confidence 467899999999999 689998887899999999999987 6899999999985 6777776 3333
Q ss_pred CCCCccEEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccC-CC---ccccCCceeeeecCCCCCCCchhhccCCCc
Q 038808 101 ATPNLKLFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVST-PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLEN 175 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~l-p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~s 175 (185)
.+++|++|++.++..+..++ ..+..+++|++|++++| .+..+ |. .++ +|++|++.++. +..++...+..+++
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~-~L~~L~l~~n~-l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQ-NVSHLILHMKQ-HILLLEIFVDVTSS 223 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCS-EEEEEEEECSC-STTHHHHHHHHTTT
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccc-cCCeecCCCCc-cccchhhhhhhccc
Confidence 46799999999987777764 56889999999999999 55555 43 344 89999998764 67777666667899
Q ss_pred ccccccccC
Q 038808 176 LRSLINIED 184 (185)
Q Consensus 176 L~~L~~l~~ 184 (185)
|++| ++++
T Consensus 224 L~~L-~L~~ 231 (353)
T 2z80_A 224 VECL-ELRD 231 (353)
T ss_dssp EEEE-EEES
T ss_pred ccEE-ECCC
Confidence 9999 8765
No 27
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=4.1e-12 Score=104.25 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=111.5
Q ss_pred CCCCCCEEEEccccccccccCCCCCC-CCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIP-KSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~-~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
..+.++.|++++ ++++.++.+.|. .+++|+.|++++ .+++|++|+++++ .+..++...+. .++
T Consensus 37 ~~~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~ 112 (361)
T 2xot_A 37 LPSYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS-DLQ 112 (361)
T ss_dssp CCTTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-TCT
T ss_pred CCCCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC-CCc
Confidence 356799999999 799999988887 899999999987 6789999999985 58888776554 466
Q ss_pred CccEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCCC-cc-----ccCCceeeeecCCCCCCCchhhccCCCcc
Q 038808 104 NLKLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTPG-SF-----PETLRKLSIVSCHKFRPRRDWRLHKLENL 176 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~-~l-----~~~L~~L~l~~c~~l~~~~~~~l~~l~sL 176 (185)
+|+.|+++++. +..+ |..+..+++|++|++++| .+..+|. .+ ..+|+.|++.+ +.+..++...+..++.+
T Consensus 113 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 113 ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHH
T ss_pred CCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHh
Confidence 99999998864 5555 567889999999999998 8888876 32 23899999977 46778877677777764
Q ss_pred --cccccccC
Q 038808 177 --RSLINIED 184 (185)
Q Consensus 177 --~~L~~l~~ 184 (185)
+.| ++.+
T Consensus 190 ~l~~l-~l~~ 198 (361)
T 2xot_A 190 VKNGL-YLHN 198 (361)
T ss_dssp HHTTE-ECCS
T ss_pred hcceE-EecC
Confidence 667 6654
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=3.9e-12 Score=102.86 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
+++|++|++++ ++++.++++.|.++++|++|++++ .+++|++|+++++ .+..+|...++ +|
T Consensus 53 ~~~l~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~----~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQN--NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPS----SL 125 (332)
T ss_dssp CTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCCT----TC
T ss_pred CCCCeEEECCC--CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccccc----cC
Confidence 46778888877 567777766777777788887766 5677777777764 45566655444 66
Q ss_pred cEEEeecCcCCccccc-cCCCCCCCCEEeecCC
Q 038808 106 KLFVILDWKILEVIPN-LRHSLSFLTELFIQEC 137 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c 137 (185)
++|++.++ .+..+|. .+..+++|++|+++++
T Consensus 126 ~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 126 VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CEEECCCC-ccCccCHhHhCCCccCCEEECCCC
Confidence 66666554 3444443 2455555555555554
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.38 E-value=3.9e-12 Score=104.96 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
+|+.|+++++.--...|..+..+++|++|++++| .+..+|. .+| +|+.|++.+| .+..++. .+..+++|++|
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~-~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L- 323 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIP-TLKVLDLSHN-HLLHVER-NQPQFDRLENL- 323 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCT-TCCEEECCSS-CCCCCGG-GHHHHTTCSEE-
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCC-CCCEEECCCC-cceecCc-cccccCcCCEE-
Confidence 4444444443211122444556666666666665 4444444 233 6666666554 3444443 24445555555
Q ss_pred ccc
Q 038808 181 NIE 183 (185)
Q Consensus 181 ~l~ 183 (185)
+++
T Consensus 324 ~L~ 326 (390)
T 3o6n_A 324 YLD 326 (390)
T ss_dssp ECC
T ss_pred ECC
Confidence 544
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.3e-11 Score=96.15 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=100.5
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.++.+.|..+++|+.|++++ .+++|++|+++++ .+..++...+. .
T Consensus 54 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~ 129 (251)
T 3m19_A 54 TFRGLTKLTWLNLDY--NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFD-R 129 (251)
T ss_dssp TTTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-T
T ss_pred HhcCcccCCEEECCC--CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhc-c
Confidence 467789999999999 789999988899999999999987 6789999999985 68888876543 3
Q ss_pred CCCccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCC
Q 038808 102 TPNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCH 160 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~ 160 (185)
+++|+.|+++++ .++.+|. .++.+++|++|++++| .+..++. .++ +|+.|++.+++
T Consensus 130 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLG-KLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT-TCCEEECCSCC
T ss_pred CCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCC-CCCEEEeeCCc
Confidence 569999999886 6777776 5889999999999999 7777775 244 89999998754
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.5e-11 Score=93.12 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
...++|++|++++ ++++.++.+.|..+++|++|++++ .+++|++|+++++ .+..++...+. .++
T Consensus 25 ~~~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~ 100 (208)
T 2o6s_A 25 GIPAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFD-KLT 100 (208)
T ss_dssp CCCTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCT
T ss_pred CCCCCCcEEEcCC--CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhc-Ccc
Confidence 3467899999999 689999887888887777777765 4566777777664 45555554332 244
Q ss_pred CccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecC
Q 038808 104 NLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSC 159 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c 159 (185)
+|++|+++++ .+..++.. +..+++|++|+++++ .+..++. . ++ +|+.|++.++
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~-~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLT-SLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT-TCCEEECCSC
T ss_pred CCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCC-CccEEEecCC
Confidence 7777777654 45555443 566777777777776 5555554 1 23 6777777664
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=1.2e-11 Score=105.37 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=111.1
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcc-cCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVS-FPERGLPL 100 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~-l~~~~~~~ 100 (185)
..+++|++|++++ ++++...+..+..+++|+.|++++ .+++|++|+++++. +.. +|.+.+.
T Consensus 321 ~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~- 396 (520)
T 2z7x_B 321 SKISPFLHLDFSN--NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCS- 396 (520)
T ss_dssp SSCCCCCEEECCS--SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCC-
T ss_pred hhCCcccEEEeEC--CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhc-
Confidence 5789999999999 577774444788899999999987 68999999999865 544 7765443
Q ss_pred CCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 101 ATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
.+++|+.|++++|.-...+|..+. ++|++|++++| .+..+|. .++ +|+.|++.+| .+..+|...+.++++|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~-~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLE-ALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCT-TCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCC-CCCEEECCCC-cCCccCHHHhccCCccc
Confidence 356999999998764455665543 79999999999 7888887 345 9999999886 67788876688999999
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
+| ++++
T Consensus 472 ~L-~l~~ 477 (520)
T 2z7x_B 472 KI-WLHT 477 (520)
T ss_dssp EE-ECCS
T ss_pred EE-ECcC
Confidence 99 8865
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.37 E-value=5e-12 Score=100.95 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCCCCEEEEccccccccccCC-CCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcc--cCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFIT-RPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVS--FPERGLPLA 101 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~-~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~--l~~~~~~~~ 101 (185)
.+++|++|++++ ++++.++. ..+..+++|++|++++ .+++|++|+++++. +.. +|.....
T Consensus 99 ~l~~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-- 173 (306)
T 2z66_A 99 GLEQLEHLDFQH--SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTE-- 173 (306)
T ss_dssp TCTTCCEEECTT--SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTT--
T ss_pred CCCCCCEEECCC--CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhHHhh--
Confidence 455666666665 45555543 4456666666666665 35666677766643 322 3332222
Q ss_pred CCCccEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCC-Cc
Q 038808 102 TPNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKL-EN 175 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l-~s 175 (185)
+++|+.|+++++. +..+ |..+..+++|++|++++| .+..++. .++ +|+.|++.++ .+....+..+..+ ++
T Consensus 174 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 174 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN-SLQVLDYSLN-HIMTSKKQELQHFPSS 249 (306)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCT-TCCEEECTTS-CCCBCSSSSCCCCCTT
T ss_pred CcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcc-cCCEeECCCC-CCcccCHHHHHhhhcc
Confidence 4477777776653 4443 455667777777777776 5555554 233 7777777665 3444433356666 36
Q ss_pred ccccccccC
Q 038808 176 LRSLINIED 184 (185)
Q Consensus 176 L~~L~~l~~ 184 (185)
|++| ++++
T Consensus 250 L~~L-~L~~ 257 (306)
T 2z66_A 250 LAFL-NLTQ 257 (306)
T ss_dssp CCEE-ECTT
T ss_pred CCEE-EccC
Confidence 7777 6654
No 34
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=103.66 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=93.8
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------------CCCCCcEEeeeCCCCCcccCCC--CC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------------DHMSLAILDIKQCPKIVSFPER--GL 98 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------------~l~~L~~L~l~~c~~l~~l~~~--~~ 98 (185)
.+++|++|++++ ++++.++...+..+++|++|++++ .+++|++|++++| .++.++.. .+
T Consensus 143 ~~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQ--AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEEC--CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred hccCCCEEEeeC--CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence 366777777776 466666666677777777777766 3566777777775 34443321 00
Q ss_pred CCCCCCccEEEeecCcCCccc-cccCCCC---CCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCC
Q 038808 99 PLATPNLKLFVILDWKILEVI-PNLRHSL---SFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLE 174 (185)
Q Consensus 99 ~~~~~~L~~L~l~~c~~L~~l-p~~~~~l---~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~ 174 (185)
...+++|++|+++++. +..+ |..+..+ ++|++|++++| .++.+|..++.+|+.|++.++ .+..++. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~--~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQ--PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCC--TTSCC
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCch--hhhCC
Confidence 0012488888887754 5444 6666655 69999999988 777888744459999999774 5666553 57788
Q ss_pred cccccccccC
Q 038808 175 NLRSLINIED 184 (185)
Q Consensus 175 sL~~L~~l~~ 184 (185)
+|+.| ++++
T Consensus 295 ~L~~L-~L~~ 303 (310)
T 4glp_A 295 EVDNL-TLDG 303 (310)
T ss_dssp CCSCE-ECSS
T ss_pred CccEE-ECcC
Confidence 99988 8764
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.36 E-value=8.3e-12 Score=98.36 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.++|++|++++ ++++.++...|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++|
T Consensus 27 ~~~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS-GLSSL 102 (276)
T ss_dssp CTTCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-TCTTC
T ss_pred CCCccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhc-CCccc
Confidence 45799999999 689999987899999999999987 5789999999985 57777655443 36699
Q ss_pred cEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCcc--CCC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 106 KLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVS--TPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~--lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
++|++.++. +..++. .++.+++|++|+++++ .+.. +|. .++ +|+.|++.++ .+..++...+..+++|+
T Consensus 103 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLT-NLEHLDLSSN-KIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCT-TCCEEECCSS-CCCEECGGGGHHHHTCT
T ss_pred cEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCC-CCCEEECCCC-CCCcCCHHHhhhhhhcc
Confidence 999998764 555544 6889999999999998 6665 454 344 9999999875 45544444454444444
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=3.6e-12 Score=101.76 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCc-cccccCCCCCCCCEEeecCCCCCccCCC----cccc
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILE-VIPNLRHSLSFLTELFIQECPKLVSTPG----SFPE 149 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~ 149 (185)
.+++|++|+++++. +...+...+. .+++|++|++.++.--. .+|..+..+++|++|++++| .+..++. .++
T Consensus 124 ~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~- 199 (306)
T 2z66_A 124 SLRNLIYLDISHTH-TRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS- 199 (306)
T ss_dssp TCTTCCEEECTTSC-CEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT-
T ss_pred hccCCCEEECCCCc-CCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCC-
Confidence 34566666666542 3333333222 24577777777654322 36777788888888888888 5655533 234
Q ss_pred CCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 150 TLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+|+.|++.++ .+..++...+.++++|++| ++++
T Consensus 200 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L-~L~~ 232 (306)
T 2z66_A 200 SLQVLNMSHN-NFFSLDTFPYKCLNSLQVL-DYSL 232 (306)
T ss_dssp TCCEEECTTS-CCSBCCSGGGTTCTTCCEE-ECTT
T ss_pred CCCEEECCCC-ccCccChhhccCcccCCEe-ECCC
Confidence 8888888775 4666665567888888888 7764
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=1e-11 Score=107.72 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=65.8
Q ss_pred cCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCC
Q 038808 32 VTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLP 99 (185)
Q Consensus 32 ~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~ 99 (185)
...+..+++|++|++++ ++++.+|. .+..+++|++|++++ .+++|++|++++|.....++.+.+.
T Consensus 271 ~~~~~~l~~L~~L~l~~--n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTA--THLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp TTTTTTCTTCSEEECTT--SCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred HHHhccccCCCEEeccC--CccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 33467788999999998 57888887 577788889998887 5778888888877544455544332
Q ss_pred CCCCCccEEEeecCcCCccc---cccCCCCCCCCEEeecCC
Q 038808 100 LATPNLKLFVILDWKILEVI---PNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 100 ~~~~~L~~L~l~~c~~L~~l---p~~~~~l~~L~~L~l~~c 137 (185)
.+++|++|+++++. +..+ +..+..+++|++|++++|
T Consensus 348 -~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 348 -NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp -TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC
T ss_pred -ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC
Confidence 24466666666543 2222 334445555555555554
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=1.8e-11 Score=93.97 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=74.2
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.++|++|++++ ++++.++.+.|..+++|+.|++++ .+++|++|+++++ .+..+|.+.+. .+++|
T Consensus 31 ~~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~-~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFE-GLFSL 106 (220)
T ss_dssp CTTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTT-TCTTC
T ss_pred CcCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHcc-CCCCC
Confidence 46899999998 789999988888887777777765 4566666776663 45566654432 24466
Q ss_pred cEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeec
Q 038808 106 KLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVS 158 (185)
Q Consensus 106 ~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~ 158 (185)
+.|+++++ .+..+ |..+..+++|++|++++| .++.++. .++ +|+.|++.+
T Consensus 107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~ 161 (220)
T 2v9t_B 107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLR-AIQTMHLAQ 161 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT-TCCEEECCS
T ss_pred CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCC-CCCEEEeCC
Confidence 77776654 34443 345666667777777666 5555554 123 666666654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=6e-12 Score=103.84 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|++|++++ ++++.++...|..+++|++|++++ .+++|++|+++++ .+..+|.+.+. .+
T Consensus 65 ~~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l 140 (390)
T 3o6n_A 65 LDSFRQVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH-NT 140 (390)
T ss_dssp HHHCCCCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC
T ss_pred hcccccCcEEECCC--CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhc-CC
Confidence 34567777777776 466676666677777777777765 4666777777764 46666654432 24
Q ss_pred CCccEEEeecCcCCccc-cccCCCCCCCCEEeecCC
Q 038808 103 PNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c 137 (185)
++|++|+++++. +..+ |..+..+++|++|++++|
T Consensus 141 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 141 PKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence 577777776653 3333 334566666666666665
No 40
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=8.5e-12 Score=101.90 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=84.5
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
++++++|++++ ++++.+|.+.|.++++|++|++++ ++++++++.+.+++++..++.+.+. .+++
T Consensus 29 ~~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~-~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-NLPN 105 (350)
T ss_dssp CTTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC-CCTT
T ss_pred CCCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh-hccc
Confidence 45788888887 678888877777778888887765 3455555555555666666555443 2446
Q ss_pred ccEEEeecC------------------------cCCcccccc-CCCC-CCCCEEeecCCCCCccCCC-cc-ccCCceeee
Q 038808 105 LKLFVILDW------------------------KILEVIPNL-RHSL-SFLTELFIQECPKLVSTPG-SF-PETLRKLSI 156 (185)
Q Consensus 105 L~~L~l~~c------------------------~~L~~lp~~-~~~l-~~L~~L~l~~c~~L~~lp~-~l-~~~L~~L~l 156 (185)
|++|++.++ .++..++.. +..+ ..++.|+++++ .++.+|. .+ ..+++++.+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEEC
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhh
Confidence 666666543 233333321 2222 24556666665 5555555 21 125666666
Q ss_pred ecCCCCCCCchhhccCCCcccccccccC
Q 038808 157 VSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 157 ~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.+++.++.++...++++++|++| ++++
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~L-dLs~ 211 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVIL-DISR 211 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEE-ECTT
T ss_pred ccCCcccCCCHHHhccCcccchh-hcCC
Confidence 66666666666666677777777 6654
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.34 E-value=6.4e-12 Score=101.46 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=84.1
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCC---------------------CCCCCccEEEcCC--------------CCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPI---------------------PKSPNLDSVSITK--------------DHMS 78 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~---------------------~~l~~L~~L~l~~--------------~l~~ 78 (185)
.+..+++|++|++++ ++++.+|...+ .++++|+.|++++ .+++
T Consensus 95 ~~~~l~~L~~L~Ls~--n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 AFAPLVKLERLYLSK--NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTCTTCCEEECCS--SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HhcCCCCCCEEECCC--CcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 345678888888887 56777776433 2223344444433 2445
Q ss_pred CcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCCC----ccccCCce
Q 038808 79 LAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRK 153 (185)
Q Consensus 79 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~ 153 (185)
|++|+++++ .+..+|....+ +|+.|+++++. +..+ |..+..+++|++|++++| .+..++. .++ +|+.
T Consensus 173 L~~L~l~~n-~l~~l~~~~~~----~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~-~L~~ 244 (330)
T 1xku_A 173 LSYIRIADT-NITTIPQGLPP----SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTP-HLRE 244 (330)
T ss_dssp CCEEECCSS-CCCSCCSSCCT----TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGST-TCCE
T ss_pred cCEEECCCC-ccccCCccccc----cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCC-CCCE
Confidence 555555543 34444444333 67777776653 4443 456777888888888887 5555544 234 7888
Q ss_pred eeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 154 LSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 154 L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
|++.+| .+..+|. ++..+++|++| ++++
T Consensus 245 L~L~~N-~l~~lp~-~l~~l~~L~~L-~l~~ 272 (330)
T 1xku_A 245 LHLNNN-KLVKVPG-GLADHKYIQVV-YLHN 272 (330)
T ss_dssp EECCSS-CCSSCCT-TTTTCSSCCEE-ECCS
T ss_pred EECCCC-cCccCCh-hhccCCCcCEE-ECCC
Confidence 888775 4666665 46778888887 7754
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=8.9e-12 Score=108.59 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=40.5
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
+|+.|+++++.--...|..++.+++|++|++++| .+..+|. .+| +|+.|++.+| .+..+|. .+..+++|++|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~-~L~~L~Ls~N-~l~~i~~-~~~~l~~L~~L- 329 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIP-TLKVLDLSHN-HLLHVER-NQPQFDRLENL- 329 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCT-TCCEEECCSS-CCCCCGG-GHHHHTTCSEE-
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCC-CCcEEECCCC-CCCccCc-ccccCCCCCEE-
Confidence 4445555443222223455666667777777666 5555554 244 6777777654 3445554 34555556555
Q ss_pred ccc
Q 038808 181 NIE 183 (185)
Q Consensus 181 ~l~ 183 (185)
+++
T Consensus 330 ~L~ 332 (597)
T 3oja_B 330 YLD 332 (597)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=6.1e-12 Score=109.64 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=66.7
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|++|++++ +.++.+++..|..+++|++|++++ .+++|++|++++| .+..+|...+. .+
T Consensus 71 ~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l 146 (597)
T 3oja_B 71 LDSFRQVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH-NT 146 (597)
T ss_dssp HHHCCCCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC
T ss_pred HccCCCCcEEECCC--CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc-cC
Confidence 34567788888877 567777766777777888887776 5677788888775 56666665432 24
Q ss_pred CCccEEEeecCcCCccc-cccCCCCCCCCEEeecCC
Q 038808 103 PNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c 137 (185)
++|+.|++++|. +..+ |..++.+++|++|++++|
T Consensus 147 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 147 PKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence 577788777754 4433 445667777777777766
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.33 E-value=2.6e-11 Score=106.58 Aligned_cols=139 Identities=15% Similarity=0.216 Sum_probs=74.6
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
.+++|++|++++ +++..++...|..+++|+.|++++ .+++|+.|+++++ .+..++...+. .+
T Consensus 428 ~l~~L~~L~Ls~--n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l 503 (680)
T 1ziw_A 428 GLENIFEIYLSY--NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLE-GL 503 (680)
T ss_dssp TCTTCCEEECCS--CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC
T ss_pred CcccccEEecCC--CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhc-cc
Confidence 334444444444 233333333444444555555443 3455666666653 35555544332 24
Q ss_pred CCccEEEeecCcCCccccc---------cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhh
Q 038808 103 PNLKLFVILDWKILEVIPN---------LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWR 169 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~---------~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~ 169 (185)
++|+.|+++++. +..++. .+..+++|++|++++| .+..+|. +++ +|+.|++.+ +.+..++...
T Consensus 504 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~-~L~~L~Ls~-N~l~~l~~~~ 579 (680)
T 1ziw_A 504 EKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLF-ELKIIDLGL-NNLNTLPASV 579 (680)
T ss_dssp TTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCS-SCCCCCCTTT
T ss_pred cccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHccccc-CcceeECCC-CCCCcCCHhH
Confidence 567777776542 333321 2456677777777766 5556664 233 677777744 4566666666
Q ss_pred ccCCCcccccccccC
Q 038808 170 LHKLENLRSLINIED 184 (185)
Q Consensus 170 l~~l~sL~~L~~l~~ 184 (185)
+.++++|+.| ++++
T Consensus 580 ~~~l~~L~~L-~L~~ 593 (680)
T 1ziw_A 580 FNNQVSLKSL-NLQK 593 (680)
T ss_dssp TTTCTTCCEE-ECTT
T ss_pred hCCCCCCCEE-ECCC
Confidence 6677777777 6653
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.33 E-value=5.4e-12 Score=108.37 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=82.7
Q ss_pred CCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCC-ccccccCCCC
Q 038808 61 IPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKIL-EVIPNLRHSL 126 (185)
Q Consensus 61 ~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L-~~lp~~~~~l 126 (185)
+..+++|++|++++ .+++|++|++++|. +...+...+. .+++|+.|++.+|.-. ..+|..+..+
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhh-cCCcCcEEECcCCcCccccchhhhhcc
Confidence 44556666666655 45677777777764 3333333322 2568888888887543 3578888899
Q ss_pred CCCCEEeecCCCCCccC-CC---ccccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 127 SFLTELFIQECPKLVST-PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 127 ~~L~~L~l~~c~~L~~l-p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++|++|++++| .+..+ |. .++ +|+.|++.+| ++..+++..+.++++|++| ++++
T Consensus 470 ~~L~~L~l~~n-~l~~~~~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L-~l~~ 527 (570)
T 2z63_A 470 RNLTFLDLSQC-QLEQLSPTAFNSLS-SLQVLNMASN-QLKSVPDGIFDRLTSLQKI-WLHT 527 (570)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCCEE-ECCS
T ss_pred cCCCEEECCCC-ccccCChhhhhccc-CCCEEeCCCC-cCCCCCHHHhhcccCCcEE-EecC
Confidence 99999999998 55555 43 345 8999999886 5777777678899999999 8865
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.32 E-value=1.2e-11 Score=107.20 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
++|++|++++ +.++.+| ..+..+++|+.|++++ .+++|++|++++|. +.......+. .+++|
T Consensus 376 ~~L~~L~L~~--n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L 450 (606)
T 3vq2_A 376 NSLRHLDLSF--NGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFL-GLTSL 450 (606)
T ss_dssp SCCCEEECCS--CSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTT-TCTTC
T ss_pred CcccEeECCC--Cccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhhhc-CCCCC
Confidence 3444444443 2333344 2445555555555554 34555666665543 2222222221 13455
Q ss_pred cEEEeecCcCCc-cccccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCcccccc
Q 038808 106 KLFVILDWKILE-VIPNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLI 180 (185)
Q Consensus 106 ~~L~l~~c~~L~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~ 180 (185)
+.|++.+|.-.. .+|..++.+++|++|++++| .+..++. +++ +|+.|++.+| .+....+..+.++++|++|
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L- 526 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLH-RLQLLNMSHN-NLLFLDSSHYNQLYSLSTL- 526 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT-TCCEEECCSS-CCSCEEGGGTTTCTTCCEE-
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccc-cCCEEECCCC-cCCCcCHHHccCCCcCCEE-
Confidence 666655543222 14445555566666666555 3333322 223 5555555554 3333333345555555555
Q ss_pred ccc
Q 038808 181 NIE 183 (185)
Q Consensus 181 ~l~ 183 (185)
+++
T Consensus 527 ~l~ 529 (606)
T 3vq2_A 527 DCS 529 (606)
T ss_dssp ECT
T ss_pred ECC
Confidence 544
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.32 E-value=4.3e-11 Score=103.30 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCCCCcc-cCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------------DHMSLAILDIKQCPKIVS-FPERGLPL 100 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~~l~~-l~~~~~~~ 100 (185)
..+++|++|++++ ++++...+..+..+++|+.|++++ .+++|++|+++++. +.. +|.+.+.
T Consensus 350 ~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~- 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQ--NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCA- 425 (562)
T ss_dssp SSCCCCCEEECCS--SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCC-
T ss_pred cCCCCceEEECCC--CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhc-
Confidence 5789999999999 678775555788899999999987 57899999999865 544 7765443
Q ss_pred CCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 101 ATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
.+++|+.|++++|.--..+|..+. ++|++|++++| .++.+|. +++ +|+.|++.++ .+..+|...+..+++|+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~-~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQ-ALQELNVASN-QLKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSC-CCSEEECCSS-CCCCCCTTSTTTCTTCC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCC-CCCEEECCCC-CCCCCCHHHHhcCCCCC
Confidence 356999999998764345555443 79999999999 8888987 345 9999999874 67788876688999999
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
.| ++++
T Consensus 501 ~L-~l~~ 506 (562)
T 3a79_B 501 YI-WLHD 506 (562)
T ss_dssp CE-ECCS
T ss_pred EE-EecC
Confidence 99 8865
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=1.4e-11 Score=98.98 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
+..+++|++|++++ ++++.++. +..+++|++|++++ .+++|++|++++|. +..++. +. .+++
T Consensus 59 ~~~l~~L~~L~L~~--n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~-~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKD--NQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP--LA-GLSN 130 (308)
T ss_dssp GGGCTTCCEEECCS--SCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC-CCCCGG--GT-TCTT
T ss_pred hhccCCCCEEEccC--CcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC-CCCchh--hc-CCCC
Confidence 44567777777776 46666665 56666667776665 45566666666542 333332 11 1235
Q ss_pred ccEEEeecCc---------------------CCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCC
Q 038808 105 LKLFVILDWK---------------------ILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHK 161 (185)
Q Consensus 105 L~~L~l~~c~---------------------~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~ 161 (185)
|+.|++++|. .+..++. +..+++|++|++++| .+..++. .++ +|+.|++.+| .
T Consensus 131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~-~L~~L~L~~N-~ 206 (308)
T 1h6u_A 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISPLASLP-NLIEVHLKNN-Q 206 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCT-TCCEEECTTS-C
T ss_pred CCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChhhcCCC-CCCEEEccCC-c
Confidence 5555554431 2333333 444555555555555 4444443 233 5555555543 3
Q ss_pred CCCCchhhccCCCccccccccc
Q 038808 162 FRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 162 l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+..++ .+.++++|+.| +++
T Consensus 207 l~~~~--~l~~l~~L~~L-~l~ 225 (308)
T 1h6u_A 207 ISDVS--PLANTSNLFIV-TLT 225 (308)
T ss_dssp CCBCG--GGTTCTTCCEE-EEE
T ss_pred cCccc--cccCCCCCCEE-Ecc
Confidence 44443 24556666655 543
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=4.3e-11 Score=91.81 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCCCCEEEEccccccccccC-CCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFI-TRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKIL 116 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp-~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L 116 (185)
.+.+++|++++ ++++.++ .+.|..+ ++|++|+++++ .+..++.+.+. .+++|++|+++++ .+
T Consensus 31 ~~~~~~L~L~~--N~l~~~~~~~~~~~l------------~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N-~l 93 (220)
T 2v70_A 31 PQYTAELRLNN--NEFTVLEATGIFKKL------------PQLRKINFSNN-KITDIEEGAFE-GASGVNEILLTSN-RL 93 (220)
T ss_dssp CTTCSEEECCS--SCCCEECCCCCGGGC------------TTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CC
T ss_pred CCCCCEEEcCC--CcCCccCchhhhccC------------CCCCEEECCCC-cCCEECHHHhC-CCCCCCEEECCCC-cc
Confidence 45678888888 6788874 3456665 55555555553 35555543332 2446666666553 34
Q ss_pred ccccc-cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 117 EVIPN-LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 117 ~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
..++. .+..+++|++|+++++ .+..++. +++ +|+.|++.++ .+..+++..+..+++|++| +++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L-~L~ 161 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLS-SVRLLSLYDN-QITTVAPGAFDTLHSLSTL-NLL 161 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCT-TCSEEECTTS-CCCCBCTTTTTTCTTCCEE-ECC
T ss_pred CccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCc-cCCEEECCCC-cCCEECHHHhcCCCCCCEE-Eec
Confidence 44433 3556666666666666 4444432 233 6666666553 4444444455666666666 554
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=1.8e-11 Score=98.43 Aligned_cols=133 Identities=14% Similarity=0.194 Sum_probs=100.1
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
..+++|++|++++ ++++.+|. +..+++|+.|++++ .+++|++|+++++. +..++. +. .+++|
T Consensus 38 ~~l~~L~~L~l~~--~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~-~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFG--TGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNVSA--IA-GLQSI 109 (308)
T ss_dssp HHHHTCCEEECTT--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCCGG--GT-TCTTC
T ss_pred HHcCCcCEEEeeC--CCccCchh--hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCchh--hc-CCCCC
Confidence 4588999999999 47888874 78889999999988 68899999999864 666653 21 25699
Q ss_pred cEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 106 KLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+.|++++|. +..++. +..+++|++|++++| .+..++. .++ +|+.|++.+| .+..++. +.++++|++| +++
T Consensus 110 ~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~-~L~~L~l~~n-~l~~~~~--l~~l~~L~~L-~l~ 181 (308)
T 1h6u_A 110 KTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLT-NLQYLSIGNA-QVSDLTP--LANLSKLTTL-KAD 181 (308)
T ss_dssp CEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCT-TCCEEECCSS-CCCCCGG--GTTCTTCCEE-ECC
T ss_pred CEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCccccCCC-CccEEEccCC-cCCCChh--hcCCCCCCEE-ECC
Confidence 999998864 666664 788889999999888 6666665 344 7888888765 4555543 5667777776 665
Q ss_pred C
Q 038808 184 D 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 182 ~ 182 (308)
T 1h6u_A 182 D 182 (308)
T ss_dssp S
T ss_pred C
Confidence 3
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.30 E-value=1.5e-11 Score=105.33 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCC-CCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPE-RGLPLA 101 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~-~~~~~~ 101 (185)
+..+++|++|++++ ++++.++++.|.++++|++|++++ .+++|++|+++++ .+..++. ..+. .
T Consensus 46 ~~~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-~ 121 (549)
T 2z81_A 46 LRACANLQVLILKS--SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFP-N 121 (549)
T ss_dssp TSSCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCT-T
T ss_pred hhcCCcccEEECCC--CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhh-c
Confidence 45566666676666 466666655666666667776665 4566667776664 3433211 1111 2
Q ss_pred CCCccEEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 102 TPNLKLFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
+++|++|+++++..+..+| ..+..+++|++|++++|..-..+|. .++ +|+.|++.++. ...++.+.+..+++|+
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~-~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSE-SAFLLEIFADILSSVR 199 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSB-STTHHHHHHHSTTTBS
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc-cCceEecccCc-ccccchhhHhhccccc
Confidence 4467777776665555554 3466666666666666632222332 122 44555554332 2233333333445555
Q ss_pred ccccc
Q 038808 178 SLINI 182 (185)
Q Consensus 178 ~L~~l 182 (185)
+| ++
T Consensus 200 ~L-~L 203 (549)
T 2z81_A 200 YL-EL 203 (549)
T ss_dssp EE-EE
T ss_pred EE-Ec
Confidence 54 44
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=8.3e-12 Score=100.36 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=81.2
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------------CCCCCcEEeeeCCCCCccc---CCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------------DHMSLAILDIKQCPKIVSF---PERGLP 99 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------------~l~~L~~L~l~~c~~l~~l---~~~~~~ 99 (185)
++|++|++++ ++++.++.+.+..+++|++|++++ .+++|++|++++| .+..+ +...+.
T Consensus 149 ~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQ--AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEES--CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHH
T ss_pred CCCcEEEeeC--CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHh
Confidence 4555555555 345555544555666666666654 3456666666654 33322 111110
Q ss_pred CCCCCccEEEeecCcCCcccc--ccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 100 LATPNLKLFVILDWKILEVIP--NLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 100 ~~~~~L~~L~l~~c~~L~~lp--~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
.+++|+.|+++++. +...+ ..+..+++|++|++++| .++.+|..++.+|+.|++.++ .+..+|. +..+++|+
T Consensus 226 -~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~--~~~l~~L~ 299 (312)
T 1wwl_A 226 -ARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN-RLDRNPS--PDELPQVG 299 (312)
T ss_dssp -TTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS-CCCSCCC--TTTSCEEE
T ss_pred -cCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC-CCCCChh--HhhCCCCC
Confidence 12377777776653 44432 33456788888888888 677787733348888888764 5666653 77888888
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
+| ++++
T Consensus 300 ~L-~L~~ 305 (312)
T 1wwl_A 300 NL-SLKG 305 (312)
T ss_dssp EE-ECTT
T ss_pred EE-eccC
Confidence 88 7764
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=1.2e-11 Score=107.17 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCCCCCCCCEEEEccccccccccCC-CCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcc-cCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFIT-RPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVS-FPERGLP 99 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~-~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~-l~~~~~~ 99 (185)
.+..+++|++|++++ +++..+++ ..+..+++|+.|++++ .+++|++|++++|.--.. +|....
T Consensus 394 ~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 470 (606)
T 3vq2_A 394 NFMGLEELQHLDFQH--STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA- 470 (606)
T ss_dssp CCTTCTTCCEEECTT--SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred hccCCCCCCeeECCC--CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc-
Confidence 355678888888888 46666544 5677888888888876 568888888887643332 333222
Q ss_pred CCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccC-CC---ccccCCceeeeecCCCCCCCchhhccCCC-
Q 038808 100 LATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVST-PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLE- 174 (185)
Q Consensus 100 ~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~l-p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~- 174 (185)
.+++|+.|++++|.-....|..+..+++|++|++++| .+..+ |. .++ +|+.|++.+| .+..+|.+ +..++
T Consensus 471 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~L~l~~N-~l~~~p~~-~~~l~~ 545 (606)
T 3vq2_A 471 -NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY-SLSTLDCSFN-RIETSKGI-LQHFPK 545 (606)
T ss_dssp -TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT-TCCEEECTTS-CCCCEESC-GGGSCT
T ss_pred -cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCC-cCCEEECCCC-cCcccCHh-Hhhhcc
Confidence 2558888888877433444566788888888888888 45444 33 344 7888888775 46677764 77776
Q ss_pred cccccccccC
Q 038808 175 NLRSLINIED 184 (185)
Q Consensus 175 sL~~L~~l~~ 184 (185)
+|++| ++++
T Consensus 546 ~L~~l-~l~~ 554 (606)
T 3vq2_A 546 SLAFF-NLTN 554 (606)
T ss_dssp TCCEE-ECCS
T ss_pred cCcEE-EccC
Confidence 58887 7754
No 54
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=8.5e-11 Score=90.14 Aligned_cols=131 Identities=14% Similarity=0.216 Sum_probs=104.5
Q ss_pred CEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEE
Q 038808 42 DHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFV 109 (185)
Q Consensus 42 ~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 109 (185)
+.++.++ ++++.+|.. ++ ++++.|++++ .+++|++|+++++ .+..+....+. .+++|++|+
T Consensus 14 ~~v~c~~--~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~-~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRG--KGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-GLRSLNSLV 86 (220)
T ss_dssp TEEECTT--SCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT-TCSSCCEEE
T ss_pred CEEEcCC--CCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh-CCcCCCEEE
Confidence 5678877 789999973 34 5789999987 6789999999985 57777655554 367999999
Q ss_pred eecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 110 ILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 110 l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
++++ .++.+|.. +..+++|++|+++++ .+..++. +++ +|+.|++.+ +.+..++...+..+++|++| ++++
T Consensus 87 Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L-~L~~ 161 (220)
T 2v9t_B 87 LYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLH-NLNLLSLYD-NKLQTIAKGTFSPLRAIQTM-HLAQ 161 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCS-SCCSCCCTTTTTTCTTCCEE-ECCS
T ss_pred CCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCC-CCCEEECCC-CcCCEECHHHHhCCCCCCEE-EeCC
Confidence 9875 67788775 578999999999999 7777755 345 999999987 46777777678999999999 8865
No 55
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.2e-11 Score=95.98 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=103.7
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
.+..+++|++|++++ ++++.+| .+..+++|+.|++++ .+++|++|+++++ .+..++.... +
T Consensus 36 ~~~~l~~L~~L~l~~--n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N-~l~~l~~~~~----~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDN--SNIQSLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN-RLKNLNGIPS----A 106 (263)
T ss_dssp CHHHHTTCSEEECTT--SCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCSCCTTCCC----S
T ss_pred chhhcCcCcEEECcC--CCcccch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC-ccCCcCcccc----C
Confidence 345678999999998 4788887 377888899999987 6788999999885 5766665333 3
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLIN 181 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~ 181 (185)
+|+.|++++| .+..++ .+..+++|++|++++| .+..++. .++ +|+.|++.++ .+..+ ..+..+++|+.| +
T Consensus 107 ~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~L~~L~L~~N-~i~~~--~~l~~l~~L~~L-~ 178 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLS-KLEVLDLHGN-EITNT--GGLTRLKKVNWI-D 178 (263)
T ss_dssp SCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCT-TCCEEECTTS-CCCBC--TTSTTCCCCCEE-E
T ss_pred cccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCChHHccCC-CCCEEECCCC-cCcch--HHhccCCCCCEE-e
Confidence 8999999886 567665 5788999999999998 7777775 445 8999999775 45555 367888888888 7
Q ss_pred ccC
Q 038808 182 IED 184 (185)
Q Consensus 182 l~~ 184 (185)
+++
T Consensus 179 l~~ 181 (263)
T 1xeu_A 179 LTG 181 (263)
T ss_dssp EEE
T ss_pred CCC
Confidence 754
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=1.7e-11 Score=105.00 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=108.8
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
+++|++|++++ ++++.+++..|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++|
T Consensus 25 ~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSF--NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG-PLSSL 100 (549)
T ss_dssp CTTCCEEECCS--SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT-TCTTC
T ss_pred CCCccEEECcC--CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhc-cCCCC
Confidence 57999999999 679998877899999999999987 6789999999986 56666543222 25599
Q ss_pred cEEEeecCcCCc--cccccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 106 KLFVILDWKILE--VIPNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 106 ~~L~l~~c~~L~--~lp~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
++|+++++. +. .+|..++.+++|++|++++|..+..+|. +++ +|+.|++.++. +....+..+..+++|++|
T Consensus 101 ~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 101 KYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALS-LRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETT-CCEECTTTTTTCSEEEEE
T ss_pred cEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCc-ccccChhhhhccccCceE
Confidence 999998864 55 3466788999999999999976777764 345 89999998865 444333478889999988
Q ss_pred ccccC
Q 038808 180 INIED 184 (185)
Q Consensus 180 ~~l~~ 184 (185)
++++
T Consensus 178 -~l~~ 181 (549)
T 2z81_A 178 -TLHL 181 (549)
T ss_dssp -EEEC
T ss_pred -eccc
Confidence 7753
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=3.7e-11 Score=97.29 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=65.7
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
+..+++|++|++++ ++++.++. +..+++|++|++++ .+++|++|++++|. +..++. +. .+++
T Consensus 62 ~~~~~~L~~L~l~~--n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~--~~-~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNG--NQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN-ISDISP--LA-NLTK 133 (347)
T ss_dssp GGGCTTCCEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSC-CCCCGG--GT-TCTT
T ss_pred hhhcCCccEEEccC--Cccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCc-ccCchh--hc-cCCc
Confidence 45567777777777 36666665 66667777777766 56677777776653 444433 11 2346
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecC
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSC 159 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c 159 (185)
|+.|++.+|..+..++. +..+++|++|++++| .+..++. .++ +|+.|++.+|
T Consensus 134 L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~l~-~L~~L~l~~n 187 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTPIANLT-DLYSLSLNYN 187 (347)
T ss_dssp CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCT-TCSEEECTTS
T ss_pred eeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchhhccCC-CCCEEEccCC
Confidence 77777766655554433 555666666666655 3333332 233 5555555443
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.1e-11 Score=93.33 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=92.9
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcc-cCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVS-FPERGLPL 100 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~-l~~~~~~~ 100 (185)
.+..+++|++|++++ | .++.++. +..+++|++|++++ .+++|++|++++|. +.. .+.. +.
T Consensus 61 ~l~~l~~L~~L~l~~-n-~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~-l~- 133 (197)
T 4ezg_A 61 GIEYAHNIKDLTINN-I-HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTK-IN- 133 (197)
T ss_dssp TGGGCTTCSEEEEES-C-CCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHH-HT-
T ss_pred HHhcCCCCCEEEccC-C-CCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHHH-Hh-
Confidence 456789999999999 6 7777764 78889999999987 68999999999874 443 2221 11
Q ss_pred CCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecC
Q 038808 101 ATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSC 159 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c 159 (185)
.+++|+.|++++|..+..+| .+..+++|++|++++| .+..++. .++ +|+.|++.+.
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~-~L~~L~l~~N 191 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFP-KLNQLYAFSQ 191 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCS-SCCEEEECBC
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCC-CCCEEEeeCc
Confidence 24599999999987688887 6889999999999999 6777766 566 9999999774
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=4.9e-11 Score=103.06 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=94.1
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
+++++|++++ ++++.+|...|.++++|++|++++ .+++|++|+++++ .++.+|.+.|. .+++|+
T Consensus 52 ~~~~~LdLs~--N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~-~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS-GLSSLQ 127 (635)
T ss_dssp TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGT-TCTTCC
T ss_pred cCCCEEEeeC--CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhc-CCCCCC
Confidence 4899999999 899999998899998888888877 5778888888875 57777765553 356888
Q ss_pred EEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCC--C---ccccCCceeeeecCCCCCCCchhhccCCCcc
Q 038808 107 LFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTP--G---SFPETLRKLSIVSCHKFRPRRDWRLHKLENL 176 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp--~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL 176 (185)
+|++.++ +++.+|. .++++++|++|++++| .+..++ . .++ +|+.|++.++ .+..++...+..++++
T Consensus 128 ~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 128 KLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLT-NLEHLDLSSN-KIQSIYCTDLRVLHQM 199 (635)
T ss_dssp EEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCT-TCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred EEECCCC-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccch-hhhhhcccCc-cccccccccccchhhh
Confidence 8888775 4666665 4778888888888887 555443 2 234 7888888764 4555544444444443
No 60
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=2.8e-11 Score=91.58 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=97.1
Q ss_pred cCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCC
Q 038808 32 VTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLP 99 (185)
Q Consensus 32 ~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~ 99 (185)
...+..+++|++|++++ ++++.+|...|..+++|++|++++ .+++|++|+++++ .+..++...+.
T Consensus 45 ~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 121 (208)
T 2o6s_A 45 NGVFDELTSLTQLYLGG--NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFD 121 (208)
T ss_dssp TTTTTTCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred hhhhcccccCcEEECCC--CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhc
Confidence 33457899999999998 789999988889999999999987 5789999999985 67777765543
Q ss_pred CCCCCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCch
Q 038808 100 LATPNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRD 167 (185)
Q Consensus 100 ~~~~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~ 167 (185)
.+++|+.|+++++ .+..++.. +..+++|++|++++++.....| +|+.|+++.+.....+|.
T Consensus 122 -~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 122 -KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-----TTHHHHHHHHHCTTTBBC
T ss_pred -cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCCC-----CHHHHHHHHHhCCceeec
Confidence 3569999999886 56677664 7889999999999995444333 677777665443344443
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=2.9e-11 Score=96.50 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=92.3
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
+..+++|++|++++ ++++.++. +..+++|+.|++++ .+++|++|++++| .+..++. +. .+++
T Consensus 64 ~~~l~~L~~L~L~~--n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~i~~~~~--l~-~l~~ 135 (291)
T 1h6t_A 64 IQYLPNVTKLFLNG--NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GISDING--LV-HLPQ 135 (291)
T ss_dssp GGGCTTCCEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS-CCCCCGG--GG-GCTT
T ss_pred HhcCCCCCEEEccC--CccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC-cCCCChh--hc-CCCC
Confidence 45577888888877 57777665 67777788888776 5677888888775 4554432 11 2347
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
|+.|++++| .+..+ ..+..+++|++|++++| .+..++. .++ +|+.|++.++ .+..++ .+..+++|+.| ++
T Consensus 136 L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~-~L~~L~L~~N-~i~~l~--~l~~l~~L~~L-~l 207 (291)
T 1h6t_A 136 LESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLT-KLQNLYLSKN-HISDLR--ALAGLKNLDVL-EL 207 (291)
T ss_dssp CCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCT-TCCEEECCSS-CCCBCG--GGTTCTTCSEE-EE
T ss_pred CCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCC-ccCEEECCCC-cCCCCh--hhccCCCCCEE-EC
Confidence 888888765 45555 45677888888888887 6666655 445 8888888765 566665 47778888888 76
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 208 ~~ 209 (291)
T 1h6t_A 208 FS 209 (291)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=3.7e-11 Score=103.83 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=103.6
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|+.+++.+ ++.....+...|..+.+++.++++. .+++|+.|+++++.....+.+..+. .+
T Consensus 416 ~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-~l 493 (635)
T 4g8a_A 416 FLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-EL 493 (635)
T ss_dssp CTTCTTCCEEECTT-SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TC
T ss_pred ccccccccchhhhh-ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh-hc
Confidence 34567788888877 5555555656677778888888776 5788888998887656555444443 35
Q ss_pred CCccEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCC-Ccc
Q 038808 103 PNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKL-ENL 176 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l-~sL 176 (185)
++|+.|++++| +++.+ |..++.+++|++|++++| ++..++. +++ +|+.|++++ +.+..+++..+.++ ++|
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~-~L~~L~Ls~-N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN-SLQVLDYSL-NHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCT-TCCEEECTT-SCCCBCCSSCTTCCCTTC
T ss_pred cccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCC-CCCEEECCC-CcCCCCCHHHHHhhhCcC
Confidence 68999999886 46655 556888999999999988 7777766 234 889999976 45766666677777 688
Q ss_pred cccccccC
Q 038808 177 RSLINIED 184 (185)
Q Consensus 177 ~~L~~l~~ 184 (185)
++| ++++
T Consensus 570 ~~L-~L~~ 576 (635)
T 4g8a_A 570 AFL-NLTQ 576 (635)
T ss_dssp CEE-ECTT
T ss_pred CEE-EeeC
Confidence 888 8764
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.27 E-value=5.1e-11 Score=99.76 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CCccEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccC-CC---ccccCCceeeeecCCCCCCCchhhccCCCccc
Q 038808 103 PNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVST-PG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR 177 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~l-p~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~ 177 (185)
++|+.|++++|. +..+ |..++.+++|++|++++| .+..+ |. +++ +|+.|++.++ .+..++...+.++++|+
T Consensus 323 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 323 THLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLP-NLKELALDTN-QLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred ccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhccccc-cccEEECCCC-ccccCCHhHhccCCccc
Confidence 455555555542 3333 445566667777777666 44444 22 234 7777777663 56666665667777777
Q ss_pred ccccccC
Q 038808 178 SLINIED 184 (185)
Q Consensus 178 ~L~~l~~ 184 (185)
+| ++++
T Consensus 399 ~L-~l~~ 404 (455)
T 3v47_A 399 KI-WLHT 404 (455)
T ss_dssp EE-ECCS
T ss_pred EE-EccC
Confidence 77 7654
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.27 E-value=1.2e-11 Score=110.64 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=99.0
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
+++|++|++++ | +++...+..+..+++|+.|++++ .+++|++|++++|.-...+|..... +++|
T Consensus 393 ~~~L~~L~L~~-n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQN-N-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTL 468 (768)
T ss_dssp TCCCCEEECCS-S-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTC
T ss_pred cCCccEEECCC-C-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCc
Confidence 56788888877 3 55543333567778888888876 5678888888887544455543322 4588
Q ss_pred cEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 106 KLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 106 ~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
+.|++.+|.-...+|..++.+++|++|++++|.....+|. .++ +|+.|++.+|.-...+|. .++++++|+.| ++
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L-~L 545 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPA-ELGDCRSLIWL-DL 545 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCG-GGGGCTTCCEE-EC
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCH-HHcCCCCCCEE-EC
Confidence 8888888765557788888888899999988854446665 345 888888888754445554 68888888888 77
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 546 s~ 547 (768)
T 3rgz_A 546 NT 547 (768)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.26 E-value=6.3e-11 Score=102.71 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=102.3
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
.+++++|++++ ++++.+++..|.++++|++|++++ .+++|++|+++++ .+..+++..+. .+++|
T Consensus 32 ~~~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L 107 (606)
T 3t6q_A 32 PNSTECLEFSF--NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALS-GPKAL 107 (606)
T ss_dssp CTTCCEEECTT--CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTS-SCTTC
T ss_pred CCcCcEEEccC--CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhc-ccccc
Confidence 45789999998 788888877889999999999987 6788999999886 45555444443 35699
Q ss_pred cEEEeecCcCCccc-cccCCCCCCCCEEeecCCCCCccC--CC--ccccCCceeeeecCCCCCCCchhhccCCCccc--c
Q 038808 106 KLFVILDWKILEVI-PNLRHSLSFLTELFIQECPKLVST--PG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLR--S 178 (185)
Q Consensus 106 ~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c~~L~~l--p~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~--~ 178 (185)
++|++.++. +..+ |..++.+++|++|++++| .+..+ |. +++ +|+.|++.++ .+..+++..+..+++|+ +
T Consensus 108 ~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 108 KHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTE-KLKVLDFQNN-AIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCT-TCCEEECCSS-CCCEECHHHHHTTTTCCSEE
T ss_pred cEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCc-ccCEEEcccC-cccccChhhhhhhcccceeE
Confidence 999998764 5555 566888999999999988 56655 43 444 8999999775 45555555677888887 5
Q ss_pred ccccc
Q 038808 179 LINIE 183 (185)
Q Consensus 179 L~~l~ 183 (185)
| +++
T Consensus 184 L-~l~ 187 (606)
T 3t6q_A 184 L-NLN 187 (606)
T ss_dssp E-ECT
T ss_pred E-ecC
Confidence 5 554
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=2e-11 Score=98.71 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCC-------------
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPK------------- 89 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~------------- 89 (185)
+..+++|++|++++ ++++.+|...+ ++|++|++++ .+++|++|+++++.-
T Consensus 98 ~~~l~~L~~L~L~~--n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 98 FSPLRKLQKLYISK--NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp STTCTTCCEEECCS--SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred hhCcCCCCEEECCC--CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 45677777777776 56666665333 4556666654 355566666655321
Q ss_pred -----------CcccCCCCCCCCCCCccEEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccCCC----ccccCCce
Q 038808 90 -----------IVSFPERGLPLATPNLKLFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVSTPG----SFPETLRK 153 (185)
Q Consensus 90 -----------l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~ 153 (185)
+..+|.... ++|++|+++++. +..++ ..+..+++|++|++++| .+..++. .++ +|+.
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~ 245 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLP-TLRE 245 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCT-TCCE
T ss_pred ccCEEECcCCCCCccCcccc----CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCC-CCCE
Confidence 222222222 256666665542 33333 45666777777777776 5555543 233 6777
Q ss_pred eeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 154 LSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 154 L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
|++.++ .+..+|. ++.++++|++| ++++
T Consensus 246 L~L~~N-~l~~lp~-~l~~l~~L~~L-~l~~ 273 (332)
T 2ft3_A 246 LHLDNN-KLSRVPA-GLPDLKLLQVV-YLHT 273 (332)
T ss_dssp EECCSS-CCCBCCT-TGGGCTTCCEE-ECCS
T ss_pred EECCCC-cCeecCh-hhhcCccCCEE-ECCC
Confidence 777654 4556655 36667777776 6653
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=1.3e-10 Score=98.48 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=18.2
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK 74 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~ 74 (185)
+..+++|++|++++ ++++.+| +..+++|++|++++
T Consensus 81 ~~~l~~L~~L~Ls~--N~l~~~~---~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 81 LSQNTNLTYLACDS--NKLTNLD---VTPLTKLTYLNCDT 115 (457)
T ss_dssp CTTCTTCSEEECCS--SCCSCCC---CTTCTTCCEEECCS
T ss_pred cccCCCCCEEECcC--CCCceee---cCCCCcCCEEECCC
Confidence 34455666666665 3455543 34445555555544
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=3.4e-11 Score=97.52 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
.+++|++|++++ ++++.++. +..+++|+.|++++ .+++|++|++++| .+..++. +. .+++|+
T Consensus 175 ~l~~L~~L~l~~--n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~--~~-~l~~L~ 246 (347)
T 4fmz_A 175 NLTDLYSLSLNY--NQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSP--LA-NLSQLT 246 (347)
T ss_dssp GCTTCSEEECTT--SCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GT-TCTTCC
T ss_pred cCCCCCEEEccC--Cccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcc--hh-cCCCCC
Confidence 344455555544 23444333 33344444444444 3455566666554 2333332 10 133566
Q ss_pred EEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 107 LFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+|++++| .+..++ .+..+++|++|++++| .+..++. .++ +|+.|++.+|. +...+...+.++++|++| +++
T Consensus 247 ~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~-~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L-~L~ 319 (347)
T 4fmz_A 247 WLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLS-QLNSLFLNNNQ-LGNEDMEVIGGLTNLTTL-FLS 319 (347)
T ss_dssp EEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCT-TCSEEECCSSC-CCGGGHHHHHTCTTCSEE-ECC
T ss_pred EEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCC-CCCEEECcCCc-CCCcChhHhhccccCCEE-Ecc
Confidence 6666554 333332 3445555555555555 4444433 223 55555554442 332333334445555554 443
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.24 E-value=1.4e-12 Score=105.27 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEccccccccc--cCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcc--cCC--CC
Q 038808 36 NTYPLLDHLFLDRSCDSLKM--FITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVS--FPE--RG 97 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~--lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~--l~~--~~ 97 (185)
..+++|++|++++ | .++. +|. .+.++++|++|++++ .+++|++|++++|..+.. ++. ..
T Consensus 90 ~~~~~L~~L~L~~-~-~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 90 FSPFRVQHMDLSN-S-VIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCCBCCCEEECTT-C-EECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred ccCCCCCEEEccC-C-CcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 3467777777776 4 3433 332 345556666666665 456666666666543432 211 11
Q ss_pred CC----------------------CCCC-CccEEEeecCc-CC--ccccccCCCCCCCCEEeecCCCCCcc-CCC---cc
Q 038808 98 LP----------------------LATP-NLKLFVILDWK-IL--EVIPNLRHSLSFLTELFIQECPKLVS-TPG---SF 147 (185)
Q Consensus 98 ~~----------------------~~~~-~L~~L~l~~c~-~L--~~lp~~~~~l~~L~~L~l~~c~~L~~-lp~---~l 147 (185)
++ ..++ +|++|++++|. .+ ..+|..+..+++|++|++++|..+.. .+. .+
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 11 0123 45555554443 22 22333344556666666666643321 111 23
Q ss_pred ccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 148 PETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 148 ~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+ +|+.|++.+|..+.......+.++++|++| ++++
T Consensus 247 ~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L-~l~~ 281 (336)
T 2ast_B 247 N-YLQHLSLSRCYDIIPETLLELGEIPTLKTL-QVFG 281 (336)
T ss_dssp T-TCCEEECTTCTTCCGGGGGGGGGCTTCCEE-ECTT
T ss_pred C-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEE-eccC
Confidence 3 677777766653322211235566677776 6654
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=4.8e-12 Score=101.93 Aligned_cols=142 Identities=19% Similarity=0.224 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEEccccccccc-cCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCc-ccCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKM-FITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIV-SFPERGLPL 100 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~-lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~-~l~~~~~~~ 100 (185)
+..+++|++|++++ |+++.. +|. .|.++++|++|++++ .+++|++|+++++. +. .+|.....
T Consensus 72 l~~l~~L~~L~L~~-~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~- 147 (313)
T 1ogq_A 72 LANLPYLNFLYIGG-INNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISS- 147 (313)
T ss_dssp GGGCTTCSEEEEEE-ETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG-
T ss_pred HhCCCCCCeeeCCC-CCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhc-
Confidence 34566677777764 455554 333 456666666666654 45666666666643 32 33322111
Q ss_pred CCCCccEEEeecCcCCccccccCCCCC-CCCEEeecCCCCCccCCCccc-cCCceeeeecCCCCCCCchhhccCCCcccc
Q 038808 101 ATPNLKLFVILDWKILEVIPNLRHSLS-FLTELFIQECPKLVSTPGSFP-ETLRKLSIVSCHKFRPRRDWRLHKLENLRS 178 (185)
Q Consensus 101 ~~~~L~~L~l~~c~~L~~lp~~~~~l~-~L~~L~l~~c~~L~~lp~~l~-~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~ 178 (185)
+++|++|+++++.--..+|..+..++ +|++|++++|..-..+|..+. ..|+.|++.++. +....+..+.++++|++
T Consensus 148 -l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 148 -LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDKNTQK 225 (313)
T ss_dssp -CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE-EEECCGGGCCTTSCCSE
T ss_pred -CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCc-ccCcCCHHHhcCCCCCE
Confidence 34666666665432225566666665 666666666522223333110 035555554432 22222224455555555
Q ss_pred ccccc
Q 038808 179 LINIE 183 (185)
Q Consensus 179 L~~l~ 183 (185)
| +++
T Consensus 226 L-~L~ 229 (313)
T 1ogq_A 226 I-HLA 229 (313)
T ss_dssp E-ECC
T ss_pred E-ECC
Confidence 5 443
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=8.9e-11 Score=99.45 Aligned_cols=131 Identities=18% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC---------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccE
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK---------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKL 107 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~---------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~ 107 (185)
.+++|++|++++ ++++.+| .+..+++|++|++++ .+++|++|++++| .+..++.+.+ ++|++
T Consensus 40 ~l~~L~~L~Ls~--n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l----~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHN--SSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSN-KLTNLDVTPL----TKLTY 110 (457)
T ss_dssp HHTTCCEEECCS--SCCCCCT--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCCCCTTC----TTCCE
T ss_pred HcCCCCEEEccC--CCcccCh--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCC-CCceeecCCC----CcCCE
Confidence 345555555555 3455444 244455555555544 3445555555543 2333332222 24555
Q ss_pred EEeecCcCCcccc-------------------ccCCCCCCCCEEeecCCCCCccCCC-ccccCCceeeeecCCCCCCCch
Q 038808 108 FVILDWKILEVIP-------------------NLRHSLSFLTELFIQECPKLVSTPG-SFPETLRKLSIVSCHKFRPRRD 167 (185)
Q Consensus 108 L~l~~c~~L~~lp-------------------~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~~L~~L~l~~c~~l~~~~~ 167 (185)
|+++++ .+..+| -.++.+++|++|++++|..+..++- .++ +|+.|++.++ .+..++
T Consensus 111 L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~-~L~~L~ls~n-~l~~l~- 186 (457)
T 3bz5_A 111 LNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSFN-KITELD- 186 (457)
T ss_dssp EECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCT-TCCEEECCSS-CCCCCC-
T ss_pred EECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCC-cCCEEECCCC-ccceec-
Confidence 555443 233332 0134445555555555544444432 333 5555555443 344443
Q ss_pred hhccCCCccccccccc
Q 038808 168 WRLHKLENLRSLINIE 183 (185)
Q Consensus 168 ~~l~~l~sL~~L~~l~ 183 (185)
+..+++|++| +++
T Consensus 187 --l~~l~~L~~L-~l~ 199 (457)
T 3bz5_A 187 --VSQNKLLNRL-NCD 199 (457)
T ss_dssp --CTTCTTCCEE-ECC
T ss_pred --cccCCCCCEE-ECc
Confidence 4455556555 544
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=9.8e-11 Score=102.87 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=82.7
Q ss_pred CCCCEEEEccccccccccCCCCCC-------CCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIP-------KSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLP 99 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~-------~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~ 99 (185)
++|++|++++ ++++...+..++ .+++|++|++++ .+++|++|+++++ .+..+|...+.
T Consensus 402 ~~L~~L~Ls~--N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~ 478 (636)
T 4eco_A 402 SVMSAIDFSY--NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLK 478 (636)
T ss_dssp SCEEEEECCS--SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSE
T ss_pred CccCEEECcC--CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhc
Confidence 3566666666 345443333444 455677777766 3677777777764 45566655443
Q ss_pred C------CCCCccEEEeecCcCCccccccCC--CCCCCCEEeecCCCCCccCCC---ccccCCceeeeecCC-----C-C
Q 038808 100 L------ATPNLKLFVILDWKILEVIPNLRH--SLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCH-----K-F 162 (185)
Q Consensus 100 ~------~~~~L~~L~l~~c~~L~~lp~~~~--~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~-----~-l 162 (185)
. .+++|+.|+++++ .+..+|..+. .+++|++|++++| .+..+|. .++ +|+.|+++++. . .
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSS-TLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp ETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCS-SCCEEECCSCBCTTCCBCC
T ss_pred cccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCC-CCCEEECCCCcccccCccc
Confidence 1 0116777777665 4557777665 7777777777777 5555665 334 77777775422 2 2
Q ss_pred CCCchhhccCCCcccccccccC
Q 038808 163 RPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 163 ~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
..+|. .+.++++|++| ++++
T Consensus 556 ~~~p~-~l~~l~~L~~L-~Ls~ 575 (636)
T 4eco_A 556 REWPE-GITLCPSLTQL-QIGS 575 (636)
T ss_dssp CCCCT-TGGGCSSCCEE-ECCS
T ss_pred ccChH-HHhcCCCCCEE-ECCC
Confidence 34443 56677777777 6654
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=6.4e-12 Score=101.24 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=24.1
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCceeeeec
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLRKLSIVS 158 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~ 158 (185)
+|+.|+++++ .+..+|..+..+++|++|++++| .+..+|. .++ +|+.|++.+
T Consensus 192 ~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~-~L~~L~l~~ 246 (317)
T 3o53_A 192 KLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ-NLEHFDLRG 246 (317)
T ss_dssp TCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCT-TCCEEECTT
T ss_pred cCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCC-CCCEEEccC
Confidence 4555555443 34444444444555555555554 4444443 122 455555544
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.22 E-value=1.4e-11 Score=99.12 Aligned_cols=143 Identities=11% Similarity=0.064 Sum_probs=83.6
Q ss_pred CCCCCCCCEEEEccccccccc-cCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKM-FITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~-lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
+..+++|++|++++ ++++. +|. .+.++++|++|++++ .+++|++|+++++.--..+|.....
T Consensus 97 l~~l~~L~~L~Ls~--n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-- 171 (313)
T 1ogq_A 97 IAKLTQLHYLYITH--TNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-- 171 (313)
T ss_dssp GGGCTTCSEEEEEE--ECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC--
T ss_pred HhcCCCCCEEECcC--CeeCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh--
Confidence 45678888888888 56764 443 677778888888876 5677888888775422244432222
Q ss_pred CC-CccEEEeecCcCC-----------------------ccccccCCCCCCCCEEeecCCCCCccCCC-ccccCCceeee
Q 038808 102 TP-NLKLFVILDWKIL-----------------------EVIPNLRHSLSFLTELFIQECPKLVSTPG-SFPETLRKLSI 156 (185)
Q Consensus 102 ~~-~L~~L~l~~c~~L-----------------------~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~~L~~L~l 156 (185)
++ +|+.|+++++.-- ...|..+..+++|++|++++|..-..+|. ....+|+.|++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence 22 5555555543211 12344455666677777766632222332 22227777777
Q ss_pred ecCCCCCCCchhhccCCCcccccccccC
Q 038808 157 VSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 157 ~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.++.-...+|. .+..+++|++| ++++
T Consensus 252 s~N~l~~~~p~-~l~~l~~L~~L-~Ls~ 277 (313)
T 1ogq_A 252 RNNRIYGTLPQ-GLTQLKFLHSL-NVSF 277 (313)
T ss_dssp CSSCCEECCCG-GGGGCTTCCEE-ECCS
T ss_pred cCCcccCcCCh-HHhcCcCCCEE-ECcC
Confidence 66542224444 56777777777 6654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=3.1e-11 Score=102.99 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=70.6
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------CCCCCcEEeeeCCC------------------
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------DHMSLAILDIKQCP------------------ 88 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------~l~~L~~L~l~~c~------------------ 88 (185)
.+..+++|++|++++ +.++..++ +..+++|+.|++++ ..++|+.|++++|.
T Consensus 53 ~~~~l~~L~~L~Ls~--N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 53 DLAPFTKLELLNLSS--NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGTTCTTCCEEECTT--SCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHhCCCCCCEEEeeC--CCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 456677788888877 46665544 66666777777766 22444444444321
Q ss_pred --CCcccCCCCCCCCCCCccEEEeecCcCCccccccCC-CCCCCCEEeecCCCCCccCCC-ccccCCceeeeecCCCCCC
Q 038808 89 --KIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRH-SLSFLTELFIQECPKLVSTPG-SFPETLRKLSIVSCHKFRP 164 (185)
Q Consensus 89 --~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~-~l~~L~~L~l~~c~~L~~lp~-~l~~~L~~L~l~~c~~l~~ 164 (185)
.+..+++..+. .+++|+.|+++++.--...|..+. .+++|++|++++| .+..+|. ...++|+.|++.++ .+..
T Consensus 129 ~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~ 205 (487)
T 3oja_A 129 NNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAF 205 (487)
T ss_dssp SSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCE
T ss_pred CCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCC-CCCC
Confidence 22222211111 133566666655432222333333 4566666666665 4444444 21226666666543 3444
Q ss_pred CchhhccCCCccccccccc
Q 038808 165 RRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 165 ~~~~~l~~l~sL~~L~~l~ 183 (185)
+++ .+..+++|+.| +++
T Consensus 206 ~~~-~~~~l~~L~~L-~Ls 222 (487)
T 3oja_A 206 MGP-EFQSAAGVTWI-SLR 222 (487)
T ss_dssp ECG-GGGGGTTCSEE-ECT
T ss_pred CCH-hHcCCCCccEE-Eec
Confidence 443 25555555555 554
No 76
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.21 E-value=3.3e-11 Score=107.87 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=94.7
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
..+++|++|++++ | +++..++. +..+++|++|++++ .+++|++|++++|.-...+|... ++
T Consensus 197 ~~l~~L~~L~Ls~-n-~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----l~ 269 (768)
T 3rgz_A 197 SRCVNLEFLDVSS-N-NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----LK 269 (768)
T ss_dssp TTCTTCCEEECCS-S-CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCC----CT
T ss_pred ccCCcCCEEECcC-C-cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccc----cC
Confidence 5677888888887 4 55553332 77888888888876 67888888888875444555443 34
Q ss_pred CccEEEeecCcCCccccccCCCC-CCCCEEeecCCCCCccCCC---ccccCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSL-SFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l-~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
+|++|++.+|.-...+|..+... ++|++|++++|..-..+|. .++ +|+.|++.+|.-...+|...+.++++|++|
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC-CccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 88888887765444677766654 8888888888733334444 234 788888877643346665557777777777
Q ss_pred ccccC
Q 038808 180 INIED 184 (185)
Q Consensus 180 ~~l~~ 184 (185)
++++
T Consensus 349 -~Ls~ 352 (768)
T 3rgz_A 349 -DLSF 352 (768)
T ss_dssp -ECCS
T ss_pred -eCcC
Confidence 7654
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=8.7e-11 Score=100.82 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=43.7
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
+++++|++++ ++++.++...|.++++|++|++++ .+++|++|+++++ .+..++...+. .+++|+
T Consensus 28 ~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS-GLSSLQ 103 (570)
T ss_dssp SSCCEEECCS--CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-TCTTCC
T ss_pred ccccEEEccC--CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhc-Cccccc
Confidence 3455555554 445555444455555555555544 3445555555543 24444433222 233555
Q ss_pred EEEeecCcCCccccc-cCCCCCCCCEEeecCC
Q 038808 107 LFVILDWKILEVIPN-LRHSLSFLTELFIQEC 137 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c 137 (185)
+|++.++ .++.++. .++.+++|++|++++|
T Consensus 104 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 104 KLVAVET-NLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp EEECTTS-CCCCSTTCSCTTCTTCCEEECCSS
T ss_pred ccccccc-ccccCCCccccccccccEEecCCC
Confidence 5555443 2333332 2445555555555554
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=9.7e-11 Score=102.90 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=84.9
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
+++++|++++ ++++.+|...|.++++|++|++++ .+++|++|+++++ .+..+|...+. .+++|+
T Consensus 25 ~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTH--NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA-FCTNLT 100 (680)
T ss_dssp TTCSEEECCS--SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT-TCTTCS
T ss_pred CCCcEEECCC--CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc-cCCCCC
Confidence 6788888877 577777766677777778887765 4677778877775 56666654443 355777
Q ss_pred EEEeecCcCCcccc-ccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhcc--CCCccccc
Q 038808 107 LFVILDWKILEVIP-NLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLH--KLENLRSL 179 (185)
Q Consensus 107 ~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~--~l~sL~~L 179 (185)
+|+++++. +..++ ..++.+++|++|++++| .+..++. .++ +|+.|++.++ .+..++...+. .+++|++|
T Consensus 101 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 101 ELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLE-NLQELLLSNN-KIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp EEECCSSC-CCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCT-TCCEEECCSS-CCCCBCHHHHGGGTTCEESEE
T ss_pred EEECCCCc-cCccChhHccccCCCCEEECCCC-cccccCchhhcccc-cCCEEEccCC-cccccCHHHhhccccccccEE
Confidence 77777653 44544 45677777777777777 4443332 233 6777777654 34443332322 34566666
Q ss_pred cccc
Q 038808 180 INIE 183 (185)
Q Consensus 180 ~~l~ 183 (185)
+++
T Consensus 177 -~L~ 179 (680)
T 1ziw_A 177 -ELS 179 (680)
T ss_dssp -ECT
T ss_pred -ECC
Confidence 554
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.21 E-value=1.4e-12 Score=105.23 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=67.1
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCc-ccCCCCCCCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIV-SFPERGLPLATPN 104 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~ 104 (185)
++++.|++.+ +.+...+.. +..+++|++|++++ .+++|++|++++|. +. ..+.. +. .+++
T Consensus 70 ~~l~~L~l~~--n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~-l~-~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPR--SFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT-LA-KNSN 143 (336)
T ss_dssp TTCSEEECTT--CEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH-HT-TCTT
T ss_pred ccceEEEcCC--ccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHH-Hh-cCCC
Confidence 7899999998 677776653 55689999999988 78999999999985 43 22221 11 1448
Q ss_pred ccEEEeecCcCCcc--ccccCCCCCCCCEEeecCCCCC
Q 038808 105 LKLFVILDWKILEV--IPNLRHSLSFLTELFIQECPKL 140 (185)
Q Consensus 105 L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~L 140 (185)
|++|++++|..+.. ++..+..+++|++|++++|+.+
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 88888888765652 4544555666666666666433
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=2.5e-11 Score=97.78 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK 74 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~ 74 (185)
+..+++|++|++++ ++++..+. +..+++|++|++++
T Consensus 54 ~~~l~~L~~L~Ls~--n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 54 LAPFTKLELLNLSS--NVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp HTTCTTCCEEECTT--SCCEEEEE--ETTCTTCCEEECCS
T ss_pred hhCCCcCCEEECCC--CcCCcchh--hhhcCCCCEEECcC
Confidence 35667777777776 45655443 55566666666665
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=7.1e-11 Score=94.25 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=106.8
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
...+++|++|++++ +.++.++. +..+++|++|++++ .+++|++|+++++ .+..++. +. .+++
T Consensus 42 ~~~l~~L~~L~l~~--~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~-~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANN--SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LK-DLKK 113 (291)
T ss_dssp HHHHHTCCEEECTT--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GT-TCTT
T ss_pred hhhcCcccEEEccC--CCcccChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh--hc-cCCC
Confidence 34688999999999 57888865 78889999999988 6889999999986 4666654 11 2459
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
|+.|++++| .+..++ .+..+++|++|++++| .+..++. .++ +|+.|++.+| .+..+++ +..+++|++| ++
T Consensus 114 L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~-~L~~L~L~~N-~l~~~~~--l~~l~~L~~L-~L 185 (291)
T 1h6t_A 114 LKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLT-KLDTLSLEDN-QISDIVP--LAGLTKLQNL-YL 185 (291)
T ss_dssp CCEEECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCT-TCSEEECCSS-CCCCCGG--GTTCTTCCEE-EC
T ss_pred CCEEECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcchhhccCC-CCCEEEccCC-ccccchh--hcCCCccCEE-EC
Confidence 999999886 466664 5778999999999998 7777765 455 9999999876 5666664 7889999999 88
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 186 ~~ 187 (291)
T 1h6t_A 186 SK 187 (291)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.20 E-value=1.3e-10 Score=97.36 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
.++|++|++++ ++++.+++..|.++++|++|++++ .+++|++|+++++. +..++...+. .+++
T Consensus 29 ~~~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSL--NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFN-GLAN 104 (455)
T ss_dssp CTTCCEEECCS--SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTT-TCTT
T ss_pred CCccCEEEecC--CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhcc-Cccc
Confidence 36778888877 577777666777777778887765 46777778877753 4444333332 2557
Q ss_pred ccEEEeecCcCCcccccc--CCCCCCCCEEeecCCCCCccC-CC----ccccCCceeeeecC
Q 038808 105 LKLFVILDWKILEVIPNL--RHSLSFLTELFIQECPKLVST-PG----SFPETLRKLSIVSC 159 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~--~~~l~~L~~L~l~~c~~L~~l-p~----~l~~~L~~L~l~~c 159 (185)
|++|++.+|.--..+|.. ++.+++|++|++++| .+..+ |. .++ +|+.|++.++
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L~~n 164 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMR-RFHVLDLTFN 164 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCT-TCCEEECTTC
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCC-cccEEeCCCC
Confidence 777777776432233433 667777777777777 44444 32 123 7777777664
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=6.9e-11 Score=103.59 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=95.7
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
.+..+++|+.|++++ ++++.++. +..+++|+.|++++ .+++|+.|++++| .+..++. +. .++
T Consensus 60 ~l~~l~~L~~L~Ls~--N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~--l~-~l~ 131 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNG--NKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GISDING--LV-HLP 131 (605)
T ss_dssp TGGGCTTCCEEECTT--SCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS-CCCCCGG--GG-GCT
T ss_pred HHccCCCCCEEEeeC--CCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC-CCCCCcc--cc-CCC
Confidence 345678888888887 57777776 77778888888877 5778888888875 3554432 11 245
Q ss_pred CccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCccccccc
Q 038808 104 NLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLIN 181 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~ 181 (185)
+|+.|++++| .+..+ ..+..+++|+.|++++| .+..+++ .++ +|+.|++.+| .+..++ .+..+++|+.| +
T Consensus 132 ~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~-~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L-~ 203 (605)
T 1m9s_A 132 QLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLT-KLQNLYLSKN-HISDLR--ALAGLKNLDVL-E 203 (605)
T ss_dssp TCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCT-TCCEEECCSS-CCCBCG--GGTTCTTCSEE-E
T ss_pred ccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCC-CCCEEECcCC-CCCCCh--HHccCCCCCEE-E
Confidence 8888888775 45555 45678888888888888 5666554 455 8888888775 465554 57788888888 7
Q ss_pred ccC
Q 038808 182 IED 184 (185)
Q Consensus 182 l~~ 184 (185)
+++
T Consensus 204 L~~ 206 (605)
T 1m9s_A 204 LFS 206 (605)
T ss_dssp CCS
T ss_pred ccC
Confidence 754
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=2.9e-10 Score=87.17 Aligned_cols=99 Identities=13% Similarity=0.219 Sum_probs=61.8
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.++.+.|..+++|++|++++ .+++|++|+++++ .+..++...+. .
T Consensus 52 ~~~~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~ 127 (220)
T 2v70_A 52 IFKKLPQLRKINFSN--NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFI-G 127 (220)
T ss_dssp CGGGCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSST-T
T ss_pred hhccCCCCCEEECCC--CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcC-C
Confidence 356789999999999 789999988899886666666655 3555666666553 34444333332 2
Q ss_pred CCCccEEEeecCcCCccc-cccCCCCCCCCEEeecCC
Q 038808 102 TPNLKLFVILDWKILEVI-PNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~l~~c 137 (185)
+++|+.|+++++ .+..+ |..+..+++|++|+++++
T Consensus 128 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 345666666553 34333 444555566666666555
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=7e-11 Score=94.92 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcccccccc-ccCCCCC-CCCCCccEEEcCC-----------C-----CCCCcEEeeeCCCCCcccCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLK-MFITRPI-PKSPNLDSVSITK-----------D-----HMSLAILDIKQCPKIVSFPERGL 98 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~-~lp~~~~-~~l~~L~~L~l~~-----------~-----l~~L~~L~l~~c~~l~~l~~~~~ 98 (185)
.+++|++|++++ ++++ .+|...+ ..+++|++|++++ . +++|++|+++++ .+..++...+
T Consensus 93 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLEN--LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEE--EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred CcCCccEEEccC--CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 367788888887 4665 3565433 6677788888776 1 277888888775 4555554333
Q ss_pred CCCCCCccEEEeecCcCCcc--ccccC--CCCCCCCEEeecCCCCCccCCC-------ccccCCceeeeecCCCCCC-Cc
Q 038808 99 PLATPNLKLFVILDWKILEV--IPNLR--HSLSFLTELFIQECPKLVSTPG-------SFPETLRKLSIVSCHKFRP-RR 166 (185)
Q Consensus 99 ~~~~~~L~~L~l~~c~~L~~--lp~~~--~~l~~L~~L~l~~c~~L~~lp~-------~l~~~L~~L~l~~c~~l~~-~~ 166 (185)
. .+++|++|+++++.-... +|..+ +.+++|++|++++| .+..++. .++ +|+.|++.++. +.. .+
T Consensus 170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~-l~~~~~ 245 (312)
T 1wwl_A 170 R-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARV-QLQGLDLSHNS-LRDAAG 245 (312)
T ss_dssp C-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTC-CCSEEECTTSC-CCSSCC
T ss_pred c-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCC-CCCEEECCCCc-CCcccc
Confidence 2 255777777776653322 23333 56666777777666 4443221 112 66666665542 322 21
Q ss_pred hhhccCCCccccccccc
Q 038808 167 DWRLHKLENLRSLINIE 183 (185)
Q Consensus 167 ~~~l~~l~sL~~L~~l~ 183 (185)
...+..+++|++| +++
T Consensus 246 ~~~~~~l~~L~~L-~Ls 261 (312)
T 1wwl_A 246 APSCDWPSQLNSL-NLS 261 (312)
T ss_dssp CSCCCCCTTCCEE-ECT
T ss_pred hhhhhhcCCCCEE-ECC
Confidence 2234445566666 554
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=4.2e-10 Score=101.71 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=62.6
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
+..+++|++|++++ |.....++++.|.++++|+.|++++ .+++|++|++++|.--..++....-..+
T Consensus 44 ~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 44 FPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred CcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 34556666666666 5445555555566666666666655 4566666666665322223322111124
Q ss_pred CCccEEEeecCcCCccc--cccCCCCCCCCEEeecCCCCCccCCC-ccc----cCCceeeeecCC
Q 038808 103 PNLKLFVILDWKILEVI--PNLRHSLSFLTELFIQECPKLVSTPG-SFP----ETLRKLSIVSCH 160 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~l--p~~~~~l~~L~~L~l~~c~~L~~lp~-~l~----~~L~~L~l~~c~ 160 (185)
++|++|+++++. +..+ +..++++++|++|+++++ .+..+.. .+. .+|+.|++.++.
T Consensus 123 ~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 123 KALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp SSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEECCCCc
Confidence 466666666543 3222 234566666666666665 3333222 111 256666665543
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=3.7e-10 Score=86.99 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
.+..+++|++|++++ ++++.+|.+.|..+++|+.|++++ .+++|++|+++++ .+..+|.....
T Consensus 59 ~~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~-- 133 (229)
T 3e6j_A 59 VFDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER-- 133 (229)
T ss_dssp TTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGG--
T ss_pred HhhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCccccc--
Confidence 356789999999999 789999988889999999999987 5789999999985 67788765433
Q ss_pred CCCccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCC
Q 038808 102 TPNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKL 140 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L 140 (185)
+++|+.|+++++ .+..+|. .+..+++|++|++.+++.-
T Consensus 134 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 134 LTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 669999999885 6777775 4788999999999998543
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.16 E-value=9.8e-11 Score=99.80 Aligned_cols=114 Identities=19% Similarity=0.108 Sum_probs=88.9
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
++|++|++++ ++++.++++.|.++++|++|++++ .+++|++|+++++ .++.+|... +++|+
T Consensus 21 ~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~----l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQ--NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCHP----TVNLK 93 (520)
T ss_dssp TTCSEEECCS--SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECCC----CCCCS
T ss_pred ccccEEECCC--CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCccc----cCCcc
Confidence 7899999998 578888766788889999999987 6899999999985 677888773 45999
Q ss_pred EEEeecCcCCc-cccccCCCCCCCCEEeecCCCCCccCCC-ccccCC--ceeeeecCCC
Q 038808 107 LFVILDWKILE-VIPNLRHSLSFLTELFIQECPKLVSTPG-SFPETL--RKLSIVSCHK 161 (185)
Q Consensus 107 ~L~l~~c~~L~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~~L--~~L~l~~c~~ 161 (185)
+|+++++.--. .+|..++.+++|++|++++| .+....- .++ +| +.|++.++.-
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIA-HLNISKVLLVLGET 150 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGGGGGGGT-TSCEEEEEEEECTT
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCc-ccchhhccccc-cceeeEEEeecccc
Confidence 99998865333 36788899999999999998 4443221 344 66 8888877643
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=1.1e-10 Score=85.36 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcccccccc--ccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCc
Q 038808 37 TYPLLDHLFLDRSCDSLK--MFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWK 114 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~--~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 114 (185)
..++|++|++++ | +++ .+|. .+..+ ++|++|++++|. +..+ ..+. .+++|+.|++++|.
T Consensus 22 ~~~~L~~L~l~~-n-~l~~~~i~~-~~~~l------------~~L~~L~l~~n~-l~~~--~~~~-~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDN-C-KSNDGKIEG-LTAEF------------VNLEFLSLINVG-LISV--SNLP-KLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCS-C-BCBTTBCSS-CCGGG------------GGCCEEEEESSC-CCCC--SSCC-CCSSCCEEEEESCC
T ss_pred CcccCCEEECCC-C-CCChhhHHH-HHHhC------------CCCCEEeCcCCC-CCCh--hhhc-cCCCCCEEECcCCc
Confidence 357899999999 4 677 6776 35554 667777777754 5544 1121 24578888887764
Q ss_pred CCcc-ccccCCCCCCCCEEeecCCCCCccCCC-----ccccCCceeeeecCCCCCCCch---hhccCCCcccccccccC
Q 038808 115 ILEV-IPNLRHSLSFLTELFIQECPKLVSTPG-----SFPETLRKLSIVSCHKFRPRRD---WRLHKLENLRSLINIED 184 (185)
Q Consensus 115 ~L~~-lp~~~~~l~~L~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l~~~~~---~~l~~l~sL~~L~~l~~ 184 (185)
+.. +|..+..+++|++|++++| .+..+|. .++ +|+.|++.++ .+...+. ..+..+++|++| ++.+
T Consensus 83 -l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~-~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L-~l~~ 156 (168)
T 2ell_A 83 -IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLE-CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYL-DGYD 156 (168)
T ss_dssp -CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCS-CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEE-TTEE
T ss_pred -CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCC-CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEe-cCCC
Confidence 444 6665666788888888887 6666552 344 7888888765 3444443 356778888877 6643
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=4.6e-11 Score=85.70 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=91.4
Q ss_pred CCCCCCEEEEcccccccc--ccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCc
Q 038808 37 TYPLLDHLFLDRSCDSLK--MFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWK 114 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~--~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 114 (185)
.+++|++|++++ | +++ .+|. .+..+ ++|++|++++| .+..+ ..+. .+++|+.|++++|.
T Consensus 15 ~~~~l~~L~l~~-n-~l~~~~~~~-~~~~l------------~~L~~L~l~~n-~l~~~--~~~~-~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDN-S-RSNEGKLEG-LTDEF------------EELEFLSTINV-GLTSI--ANLP-KLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTT-C-BCBTTBCCS-CCTTC------------TTCCEEECTTS-CCCCC--TTCC-CCTTCCEEECCSSC
T ss_pred CCccCeEEEccC-C-cCChhHHHH-HHhhc------------CCCcEEECcCC-CCCCc--hhhh-cCCCCCEEECCCCc
Confidence 457899999999 5 677 6775 55654 77778888775 45555 2222 25699999998865
Q ss_pred CCcc-ccccCCCCCCCCEEeecCCCCCccCC--C---ccccCCceeeeecCCCCCCCch---hhccCCCcccccccccC
Q 038808 115 ILEV-IPNLRHSLSFLTELFIQECPKLVSTP--G---SFPETLRKLSIVSCHKFRPRRD---WRLHKLENLRSLINIED 184 (185)
Q Consensus 115 ~L~~-lp~~~~~l~~L~~L~l~~c~~L~~lp--~---~l~~~L~~L~l~~c~~l~~~~~---~~l~~l~sL~~L~~l~~ 184 (185)
+.. +|..++.+++|++|++++| .+..++ . .++ +|+.|++.+| .+...+. ..+..+++|+.| ++++
T Consensus 76 -i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L-~l~d 149 (149)
T 2je0_A 76 -VSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE-NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYL-DGYD 149 (149)
T ss_dssp -CCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCT-TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEE-TTBC
T ss_pred -ccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCC-CCCEEeCcCC-cccchHHHHHHHHHHCCCcccc-cCCC
Confidence 554 7777777999999999999 576654 2 345 8999999886 4655554 468889999999 8764
No 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=2.7e-10 Score=96.16 Aligned_cols=14 Identities=29% Similarity=0.067 Sum_probs=6.3
Q ss_pred CCCCCCCEEeecCC
Q 038808 124 HSLSFLTELFIQEC 137 (185)
Q Consensus 124 ~~l~~L~~L~l~~c 137 (185)
..+++|++|++++|
T Consensus 306 ~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 306 SNLKNLTYLTLYFN 319 (466)
T ss_dssp GGCTTCSEEECCSS
T ss_pred cCCCCCCEEECcCC
Confidence 34444444444444
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=8e-10 Score=90.57 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=102.1
Q ss_pred CCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccE
Q 038808 41 LDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKL 107 (185)
Q Consensus 41 L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~ 107 (185)
-+.+++++ ++++.+|.. ++ .+++.|++++ .+++|++|+++++ .+..++.+.+. .+++|+.
T Consensus 20 ~~~l~c~~--~~l~~iP~~-~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~ 92 (361)
T 2xot_A 20 SNILSCSK--QQLPNVPQS-LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-PVPNLRY 92 (361)
T ss_dssp TTEEECCS--SCCSSCCSS-CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-TCTTCCE
T ss_pred CCEEEeCC--CCcCccCcc-CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-CCCCCCE
Confidence 36788887 789999974 44 4578999887 4688999999985 68888876554 4679999
Q ss_pred EEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhc---cCCCccccc
Q 038808 108 FVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRL---HKLENLRSL 179 (185)
Q Consensus 108 L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l---~~l~sL~~L 179 (185)
|+++++ .++.++. .+..+++|++|++++| .+..++. +++ +|+.|++.+ +.+..++...+ ..+++|+.|
T Consensus 93 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~-~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 93 LDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMA-QLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT-TCCEEECCS-SCCCSCCGGGTC----CTTCCEE
T ss_pred EECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcc-cCCEEECCC-CcCCeeCHHHhcCcccCCcCCEE
Confidence 999885 5777765 4789999999999999 6666654 345 999999977 46888887666 568999999
Q ss_pred ccccC
Q 038808 180 INIED 184 (185)
Q Consensus 180 ~~l~~ 184 (185)
++++
T Consensus 169 -~L~~ 172 (361)
T 2xot_A 169 -DLSS 172 (361)
T ss_dssp -ECCS
T ss_pred -ECCC
Confidence 8764
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.13 E-value=2.7e-10 Score=96.16 Aligned_cols=132 Identities=16% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCcc
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLK 106 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 106 (185)
.+++|++|++++ ++++.++. +..+++|+.|++++ .+++|++|++++|. +..++. +. .+++|+
T Consensus 241 ~l~~L~~L~l~~--n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~-~l~~L~ 312 (466)
T 1o6v_A 241 SLTNLTDLDLAN--NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDISP--IS-NLKNLT 312 (466)
T ss_dssp GCTTCSEEECCS--SCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCGG--GG-GCTTCS
T ss_pred cCCCCCEEECCC--Cccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCchh--hc-CCCCCC
Confidence 445555555555 34444443 45556666666655 45667777777653 444332 11 244888
Q ss_pred EEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 107 LFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 107 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.|++++|. +..++. +..+++|++|++++| .+..++. .++ +|+.|++.+|. +...++ +.++++|+.| ++++
T Consensus 313 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~-~L~~L~l~~n~-l~~~~~--~~~l~~L~~L-~l~~ 384 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLT-NINWLSAGHNQ-ISDLTP--LANLTRITQL-GLND 384 (466)
T ss_dssp EEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCT-TCCEEECCSSC-CCBCGG--GTTCTTCCEE-ECCC
T ss_pred EEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCchhhccCC-CCCEEeCCCCc-cCccch--hhcCCCCCEE-eccC
Confidence 88888764 554443 678899999999998 6776665 455 99999998764 555543 6888999888 7764
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=7.1e-10 Score=96.56 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=65.7
Q ss_pred CccEEEcCC--------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 66 NLDSVSITK--------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 66 ~L~~L~l~~--------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
+|+.|++++ .+++|+.|+++++ .+..+|. . +++|+.|++++| .+..+|. +. ++|++|++++|
T Consensus 121 ~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~-~----l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPELPALLEYINADNN-QLTMLPE-L----PTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC-C----CTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS
T ss_pred CCCEEECCCCcCCCCCCcCccccEEeCCCC-ccCcCCC-c----CCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC
Confidence 455555554 2345666666553 3444544 2 237777777664 4666666 44 78888888887
Q ss_pred CCCccCCCccccCC-------ceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 138 PKLVSTPGSFPETL-------RKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 138 ~~L~~lp~~l~~~L-------~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.+..+|. ++.+| +.|++.++ .+..+|. .+..+++|+.| ++++
T Consensus 191 -~L~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp~-~l~~l~~L~~L-~L~~ 239 (571)
T 3cvr_A 191 -LLESLPA-VPVRNHHSEETEIFFRCREN-RITHIPE-NILSLDPTCTI-ILED 239 (571)
T ss_dssp -CCSSCCC-CC--------CCEEEECCSS-CCCCCCG-GGGGSCTTEEE-ECCS
T ss_pred -CCCchhh-HHHhhhcccccceEEecCCC-cceecCH-HHhcCCCCCEE-EeeC
Confidence 7777776 54467 88888764 6777876 46668999988 8765
No 95
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.12 E-value=2.3e-11 Score=106.87 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=85.9
Q ss_pred CCCCCCCCEEEEccccccccc------------------cCCCCCC--CCCCccEEEcCC------------CCCCCcEE
Q 038808 35 TNTYPLLDHLFLDRSCDSLKM------------------FITRPIP--KSPNLDSVSITK------------DHMSLAIL 82 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~------------------lp~~~~~--~l~~L~~L~l~~------------~l~~L~~L 82 (185)
++.+++|++|++++ ++++. +|. .+. ++++|++|++++ .+++|++|
T Consensus 202 l~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGN--SPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcC--CccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 45688888888888 56777 776 566 788888888876 57788888
Q ss_pred eeeCCCCCc--ccCCCCCC----CCCCCccEEEeecCcCCccccc--cCCCCCCCCEEeecCCCCCc-cCCC--ccccCC
Q 038808 83 DIKQCPKIV--SFPERGLP----LATPNLKLFVILDWKILEVIPN--LRHSLSFLTELFIQECPKLV-STPG--SFPETL 151 (185)
Q Consensus 83 ~l~~c~~l~--~l~~~~~~----~~~~~L~~L~l~~c~~L~~lp~--~~~~l~~L~~L~l~~c~~L~-~lp~--~l~~~L 151 (185)
++++|..+. .+|..... ..+++|+.|++.+| .+..+|. .++.+++|++|++++| .+. .+|. .++ +|
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~-~L 355 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEI-KL 355 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCEEECCCCEEEE-EE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCccchhhhCCCC-CC
Confidence 888775344 35432111 00137777777765 3557776 6777777777777776 444 5554 223 55
Q ss_pred ceeeeecCCCCCCCchhhccCCCc-cccccccc
Q 038808 152 RKLSIVSCHKFRPRRDWRLHKLEN-LRSLINIE 183 (185)
Q Consensus 152 ~~L~l~~c~~l~~~~~~~l~~l~s-L~~L~~l~ 183 (185)
+.|++.++ .+..+|. .+.++++ |++| +++
T Consensus 356 ~~L~L~~N-~l~~lp~-~l~~l~~~L~~L-~Ls 385 (636)
T 4eco_A 356 ASLNLAYN-QITEIPA-NFCGFTEQVENL-SFA 385 (636)
T ss_dssp SEEECCSS-EEEECCT-TSEEECTTCCEE-ECC
T ss_pred CEEECCCC-ccccccH-hhhhhcccCcEE-Ecc
Confidence 55555443 2334433 2444544 5555 443
No 96
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=4.7e-11 Score=108.57 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=91.4
Q ss_pred CCCCCCCCEEEEccccccccc------------------cCCCCCC--CCCCccEEEcCC------------CCCCCcEE
Q 038808 35 TNTYPLLDHLFLDRSCDSLKM------------------FITRPIP--KSPNLDSVSITK------------DHMSLAIL 82 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~------------------lp~~~~~--~l~~L~~L~l~~------------~l~~L~~L 82 (185)
+..+++|+.|++++ ++++. +|. .++ ++++|+.|++++ .+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred HhcCCCCCEEECcC--CcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 56788899999988 57777 776 444 788889998876 57788888
Q ss_pred eeeCCCCCc--ccCCC------CCCCCCCCccEEEeecCcCCccccc--cCCCCCCCCEEeecCCCCCccCCC--ccccC
Q 038808 83 DIKQCPKIV--SFPER------GLPLATPNLKLFVILDWKILEVIPN--LRHSLSFLTELFIQECPKLVSTPG--SFPET 150 (185)
Q Consensus 83 ~l~~c~~l~--~l~~~------~~~~~~~~L~~L~l~~c~~L~~lp~--~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~ 150 (185)
+++++..+. .+|.. .+. .+++|+.|++++| .+..+|. .++.+++|++|++++| .+..+|. .++ +
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~-~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~-~ 596 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDED-TGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNV-K 596 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTT-TTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTS-E
T ss_pred ECcCCCCcccccchHHHHhhhhccc-ccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC-CcccchhhcCCC-c
Confidence 888875344 24321 111 1347777777765 3557777 6777777777777777 4556664 233 6
Q ss_pred CceeeeecCCCCCCCchhhccCCCc-ccccccccC
Q 038808 151 LRKLSIVSCHKFRPRRDWRLHKLEN-LRSLINIED 184 (185)
Q Consensus 151 L~~L~l~~c~~l~~~~~~~l~~l~s-L~~L~~l~~ 184 (185)
|+.|++.++. +..+|. .+.++++ |++| ++++
T Consensus 597 L~~L~Ls~N~-l~~lp~-~l~~l~~~L~~L-~Ls~ 628 (876)
T 4ecn_A 597 LTDLKLDYNQ-IEEIPE-DFCAFTDQVEGL-GFSH 628 (876)
T ss_dssp ESEEECCSSC-CSCCCT-TSCEECTTCCEE-ECCS
T ss_pred ceEEECcCCc-cccchH-HHhhccccCCEE-ECcC
Confidence 7777776543 445554 3566666 6666 5543
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.12 E-value=5.9e-10 Score=96.15 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPLATPNL 105 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 105 (185)
+++|++|++++ ++++.++.+.|.++++|++|++++ .+++|++|+++++ .+..+|... +++|
T Consensus 51 ~~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~----l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQ--NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCCP----MASL 123 (562)
T ss_dssp CTTCCEEECCS--SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSCC----CTTC
T ss_pred CCCcCEEECCC--CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCccc----cccC
Confidence 47899999998 688888877889999999999987 5788999999985 577888773 4599
Q ss_pred cEEEeecCcCCccc--cccCCCCCCCCEEeecCCCCCccCCC-ccccCC--ceeeeecCCC
Q 038808 106 KLFVILDWKILEVI--PNLRHSLSFLTELFIQECPKLVSTPG-SFPETL--RKLSIVSCHK 161 (185)
Q Consensus 106 ~~L~l~~c~~L~~l--p~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~~L--~~L~l~~c~~ 161 (185)
++|+++++. +..+ |..++.+++|++|+++++ .+....- +++ +| +.|++.++..
T Consensus 124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~L~L~~L~L~~n~l 181 (562)
T 3a79_B 124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLLPVA-HLHLSCILLDLVSY 181 (562)
T ss_dssp SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTTTTGGGT-TSCEEEEEEEESSC
T ss_pred CEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccCchhhhh-hceeeEEEeecccc
Confidence 999998864 5554 467889999999999987 4544322 444 55 8888877643
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=6.9e-10 Score=100.32 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCCCCCCCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERGLPLATP 103 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 103 (185)
..++|++|++++ +.++.+++..|.++++|+.|++++ .+++|++|++++| .+..+.+..+. .++
T Consensus 22 lp~~l~~LdLs~--N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~-~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSF--NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQ-GLF 97 (844)
T ss_dssp SCTTCCEEEEES--CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSC-SCS
T ss_pred CCCCcCEEECCC--CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHcc-CCc
Confidence 468999999999 789998877899999999999876 5788999999885 46666544443 366
Q ss_pred CccEEEeecCcCCcccccc--CCCCCCCCEEeecCCCCCccCCC-----ccccCCceeeeecCCCCCCCchhhccCC--C
Q 038808 104 NLKLFVILDWKILEVIPNL--RHSLSFLTELFIQECPKLVSTPG-----SFPETLRKLSIVSCHKFRPRRDWRLHKL--E 174 (185)
Q Consensus 104 ~L~~L~l~~c~~L~~lp~~--~~~l~~L~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l~~~~~~~l~~l--~ 174 (185)
+|++|++++|.--..+|.. ++.+++|++|++++| .+..++. .++ +|+.|++.++ .+.......+..+ +
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~-~L~~L~Ls~N-~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLN-SLKSIDFSSN-QIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCS-SCCEEEEESS-CCCCCCSGGGHHHHHC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCC-CCCEEECCCC-cCCeeCHHHcccccCC
Confidence 8999999887543445554 788999999999988 4544422 244 8999999775 3444433355555 7
Q ss_pred cccccccccC
Q 038808 175 NLRSLINIED 184 (185)
Q Consensus 175 sL~~L~~l~~ 184 (185)
+|+.| ++++
T Consensus 175 ~L~~L-~L~~ 183 (844)
T 3j0a_A 175 TLSFF-SLAA 183 (844)
T ss_dssp SSCCC-EECC
T ss_pred ccceE-ECCC
Confidence 78777 6653
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=9e-10 Score=100.17 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=73.1
Q ss_pred CccEEEcCC------------CCCCCcEEeeeCCCCCcccCCCCCCC------CCCCccEEEeecCcCCccccccCC--C
Q 038808 66 NLDSVSITK------------DHMSLAILDIKQCPKIVSFPERGLPL------ATPNLKLFVILDWKILEVIPNLRH--S 125 (185)
Q Consensus 66 ~L~~L~l~~------------~l~~L~~L~l~~c~~l~~l~~~~~~~------~~~~L~~L~l~~c~~L~~lp~~~~--~ 125 (185)
+|+.|++++ .+++|+.|+++++ .+..+|...+.. .+++|+.|++++| ++..+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhcc
Confidence 566666665 4567777777764 455666654431 1127888888775 5667777766 7
Q ss_pred CCCCCEEeecCCCCCccCCC---ccccCCceeeeecCC-----CC-CCCchhhccCCCcccccccccC
Q 038808 126 LSFLTELFIQECPKLVSTPG---SFPETLRKLSIVSCH-----KF-RPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 126 l~~L~~L~l~~c~~L~~lp~---~l~~~L~~L~l~~c~-----~l-~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+++|+.|++++| .+..+|. .++ +|+.|++.++. .+ ..+|. .+.++++|+.| ++++
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L-~Ls~ 815 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQL-QIGS 815 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEE-ECCS
T ss_pred CCCcCEEEeCCC-CCCccchhhhcCC-CCCEEECCCCCCcccccccccChH-HHhcCCCCCEE-ECCC
Confidence 888888888877 6666765 344 78888876522 22 34443 57777777777 7654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=3.2e-10 Score=99.35 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
...+++|+.|++++ +.++.+|. +..+++|+.|++++ .+++|+.|++++| .+..++. +. .+++
T Consensus 39 ~~~L~~L~~L~l~~--n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~--l~-~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANN--SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLSS--LK-DLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTT--CCCCCCTT--GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCTT--ST-TCTT
T ss_pred hhcCCCCCEEECcC--CCCCCChH--HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCChh--hc-cCCC
Confidence 35688999999998 57888875 88889999999988 6889999999986 5666653 21 2569
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
|+.|++++| .+..++ .+..+++|+.|++++| .+..++. .++ +|+.|++.+| .+..+++ +..+++|+.| ++
T Consensus 111 L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~-~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L-~L 182 (605)
T 1m9s_A 111 LKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLT-KLDTLSLEDN-QISDIVP--LAGLTKLQNL-YL 182 (605)
T ss_dssp CCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCT-TCSEEECCSS-CCCCCGG--GTTCTTCCEE-EC
T ss_pred CCEEEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCchhhcccC-CCCEEECcCC-cCCCchh--hccCCCCCEE-EC
Confidence 999999886 466664 5788999999999999 7777765 455 9999999886 4666654 7899999999 88
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 183 s~ 184 (605)
T 1m9s_A 183 SK 184 (605)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.07 E-value=2.2e-09 Score=90.80 Aligned_cols=95 Identities=21% Similarity=0.358 Sum_probs=55.3
Q ss_pred CCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCCccccCCceee
Q 038808 76 HMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLS 155 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~ 155 (185)
+++|++|+++++ .++.+|.. . ++|++|+++++ .+..+| .++.+++|++|++++| .+..+|. .+.+|+.|+
T Consensus 152 l~~L~~L~l~~N-~l~~lp~~-~----~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~-~~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNN-SLKKLPDL-P----PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD-LPLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCCC-C----TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC-CCTTCCEEE
T ss_pred CCCCCEEECCCC-cCcccCCC-c----ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC-CcCcccEEE
Confidence 344555555543 23333321 1 25666666554 345555 4667777777777777 5666663 334777777
Q ss_pred eecCCCCCCCchhhccCCCcccccccccC
Q 038808 156 IVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 156 l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+.+| .+..+| .++++++|++| ++++
T Consensus 222 l~~n-~l~~lp--~~~~l~~L~~L-~l~~ 246 (454)
T 1jl5_A 222 AGNN-ILEELP--ELQNLPFLTTI-YADN 246 (454)
T ss_dssp CCSS-CCSSCC--CCTTCTTCCEE-ECCS
T ss_pred CcCC-cCCccc--ccCCCCCCCEE-ECCC
Confidence 7765 455665 36677777777 6654
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=1.2e-10 Score=99.31 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCCc
Q 038808 76 HMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETLR 152 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L~ 152 (185)
+++|+.|+++++ .+..++...+...+++|+.|++++|. +..+|.. ..+++|++|++++| .+..+|. .++ +|+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~l~-~L~ 217 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAA-GVT 217 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGT-TCS
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccCCCCCEEECCCC-CCCCCCHhHcCCC-Ccc
Confidence 455555555553 23322221111012355555555432 4333322 23555555555555 4444443 122 555
Q ss_pred eeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 153 KLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 153 ~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
.|++.++ .+..+|. .+..+++|+.| +++
T Consensus 218 ~L~Ls~N-~l~~lp~-~l~~l~~L~~L-~l~ 245 (487)
T 3oja_A 218 WISLRNN-KLVLIEK-ALRFSQNLEHF-DLR 245 (487)
T ss_dssp EEECTTS-CCCEECT-TCCCCTTCCEE-ECT
T ss_pred EEEecCC-cCcccch-hhccCCCCCEE-EcC
Confidence 5555442 3333433 24445555555 443
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=1.8e-09 Score=81.17 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILE 117 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~ 117 (185)
+++|++|++++ ++++.+|. .|.. +++|++|+++++ .+..++.+.+. .+++|+.|+++++ .+.
T Consensus 30 ~~~l~~L~L~~--n~i~~ip~-~~~~------------l~~L~~L~Ls~N-~i~~i~~~~f~-~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 30 PRDVTELYLDG--NQFTLVPK-ELSN------------YKHLTLIDLSNN-RISTLSNQSFS-NMTQLLTLILSYN-RLR 91 (193)
T ss_dssp CTTCCEEECCS--SCCCSCCG-GGGG------------CTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCC
T ss_pred CCCCCEEECCC--CcCchhHH-Hhhc------------ccCCCEEECCCC-cCCEeCHhHcc-CCCCCCEEECCCC-ccC
Confidence 45677777776 56666663 4544 367777777774 56666665554 3568888888775 466
Q ss_pred cccc-cCCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecC
Q 038808 118 VIPN-LRHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSC 159 (185)
Q Consensus 118 ~lp~-~~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c 159 (185)
.++. .+..+++|++|+++++ .+..+|. . ++ +|+.|++.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~N 136 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLS-ALSHLAIGAN 136 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCT-TCCEEECCSS
T ss_pred EeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCc-cccEEEeCCC
Confidence 6554 5778888888888887 6777776 2 34 7888888753
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=4.1e-09 Score=77.59 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKI 115 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 115 (185)
..+++|++|++++ ++++.+|...|..+ ++|++|+++++ .+..++...+. .+++|+.|+++++ .
T Consensus 25 ~~~~~l~~L~l~~--n~l~~~~~~~~~~l------------~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 25 GIPSSATRLELES--NKLQSLPHGVFDKL------------TQLTKLSLSQN-QIQSLPDGVFD-KLTKLTILYLHEN-K 87 (177)
T ss_dssp TCCTTCSEEECCS--SCCCCCCTTTTTTC------------TTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-C
T ss_pred CCCCCCcEEEeCC--CcccEeCHHHhcCc------------ccccEEECCCC-cceEeChhHcc-CCCccCEEECCCC-C
Confidence 3457899999988 67888887667654 77888888775 57777765443 3569999999875 5
Q ss_pred Ccccccc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCC
Q 038808 116 LEVIPNL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCH 160 (185)
Q Consensus 116 L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~ 160 (185)
+..+|.. +..+++|++|+++++ .+..+|. . ++ +|+.|++.+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~-~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLT-SLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT-TCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCc-ccCEEEecCCC
Confidence 6676654 678999999999988 7777876 2 34 89999998754
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=3.1e-09 Score=93.40 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=57.0
Q ss_pred CCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCCcccccccc
Q 038808 103 PNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINI 182 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l 182 (185)
++|+.|++++| .++.+| ..+++|++|++++| .+..+|. .+.+|+.|++.+| .+..+|. .+.++++|+.| ++
T Consensus 221 ~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~-~l~~l~~L~~L-~L 291 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTV-NL 291 (622)
T ss_dssp TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSS-CCCSCCG-GGGGSCTTCEE-EC
T ss_pred CCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-ccccCcEEeCCCC-CCCcCCH-HHhhccccCEE-Ee
Confidence 47788888764 566676 45688999999988 7888886 4449999999876 6778876 68999999999 88
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 292 ~~ 293 (622)
T 3g06_A 292 EG 293 (622)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=1.6e-09 Score=81.16 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=68.8
Q ss_pred CCCCCEEEEccccccccccCCC-CCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITR-PIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKIL 116 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~-~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L 116 (185)
+++|++|++++ ++++.++.. .|.. +++|++|+++++ .+..++...+. .+++|++|+++++ .+
T Consensus 28 ~~~l~~L~l~~--n~i~~~~~~~~~~~------------l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l 90 (192)
T 1w8a_A 28 PLHTTELLLND--NELGRISSDGLFGR------------LPHLVKLELKRN-QLTGIEPNAFE-GASHIQELQLGEN-KI 90 (192)
T ss_dssp CTTCSEEECCS--CCCCSBCCSCSGGG------------CTTCCEEECCSS-CCCCBCTTTTT-TCTTCCEEECCSC-CC
T ss_pred CCCCCEEECCC--CcCCccCCcccccc------------CCCCCEEECCCC-CCCCcCHhHcC-CcccCCEEECCCC-cC
Confidence 44777777777 577776653 3554 377778888774 56666544443 3568888888775 46
Q ss_pred ccccc-cCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecC
Q 038808 117 EVIPN-LRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSC 159 (185)
Q Consensus 117 ~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c 159 (185)
..++. .+..+++|++|+++++ .+..++. .++ +|+.|++.++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~N 136 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLN-SLTSLNLASN 136 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCT-TCCEEECTTC
T ss_pred CccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCC-CCCEEEeCCC
Confidence 55544 4778888888888888 5555533 244 8888888764
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.02 E-value=6.5e-10 Score=89.06 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCEEEEccccccccccCCCCC--CCCCCccEEEcCC----------------CCCCCcEEeeeCCCCCcccCCCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPI--PKSPNLDSVSITK----------------DHMSLAILDIKQCPKIVSFPERGLPL 100 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~--~~l~~L~~L~l~~----------------~l~~L~~L~l~~c~~l~~l~~~~~~~ 100 (185)
++|++|++++ ++++...+..+ ..+++|++|++++ .+++|++|++++| .+..++...+.
T Consensus 91 ~~L~~L~l~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~- 166 (310)
T 4glp_A 91 SRLKELTLED--LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVR- 166 (310)
T ss_dssp SCCCEEEEES--CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCC-
T ss_pred CceeEEEeeC--CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhc-
Confidence 3477777776 35554333233 5566666666665 1556666666664 34444433332
Q ss_pred CCCCccEEEeecCc
Q 038808 101 ATPNLKLFVILDWK 114 (185)
Q Consensus 101 ~~~~L~~L~l~~c~ 114 (185)
.+++|++|+++++.
T Consensus 167 ~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 167 AFPALTSLDLSDNP 180 (310)
T ss_dssp CCTTCCEEECCSCT
T ss_pred cCCCCCEEECCCCC
Confidence 24466666666553
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=6.2e-09 Score=76.60 Aligned_cols=120 Identities=20% Similarity=0.275 Sum_probs=75.1
Q ss_pred CCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc
Q 038808 41 LDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP 120 (185)
Q Consensus 41 L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp 120 (185)
.+.+++++ ++++.+|.+ + .++|++|+++++ .+..++...+. .+++|++|+++++ .+..+|
T Consensus 9 ~~~l~~~~--~~l~~~p~~-~--------------~~~l~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~ 68 (177)
T 2o6r_A 9 GTEIRCNS--KGLTSVPTG-I--------------PSSATRLELESN-KLQSLPHGVFD-KLTQLTKLSLSQN-QIQSLP 68 (177)
T ss_dssp TTEEECCS--SCCSSCCTT-C--------------CTTCSEEECCSS-CCCCCCTTTTT-TCTTCSEEECCSS-CCCCCC
T ss_pred CCEEEecC--CCCccCCCC-C--------------CCCCcEEEeCCC-cccEeCHHHhc-CcccccEEECCCC-cceEeC
Confidence 35666666 566666642 2 146667777664 45556554432 2457777777764 466665
Q ss_pred cc-CCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 121 NL-RHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 121 ~~-~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
.. +..+++|++|+++++ .+..+|. . ++ +|+.|++.++ .+..++...+.++++|++| ++++
T Consensus 69 ~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L-~l~~ 133 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLT-QLKELALDTN-QLKSVPDGIFDRLTSLQKI-WLHT 133 (177)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS-CCSCCCTTTTTTCTTCCEE-ECCS
T ss_pred hhHccCCCccCEEECCCC-CccccCHHHhhCCc-ccCEEECcCC-cceEeCHHHhcCCcccCEE-EecC
Confidence 44 567777888888777 6666665 2 33 7777777664 5666666556777777777 6654
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.99 E-value=7.5e-09 Score=87.54 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCEEEEccccccccccCCCCCCCCCCccEEEcCC--------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeec
Q 038808 41 LDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILD 112 (185)
Q Consensus 41 L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~ 112 (185)
+++|++++ | +++.+|. ++ ++|++|++++ .+++|++|+++++ .+..++. .+ ++|++|++++
T Consensus 73 l~~L~l~~-~-~l~~lp~--~~--~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n-~l~~l~~--~~---~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNN-L-GLSSLPE--LP--PHLESLVASCNSLTELPELPQSLKSLLVDNN-NLKALSD--LP---PLLEYLGVSN 140 (454)
T ss_dssp CSEEECTT-S-CCSCCCS--CC--TTCSEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCS--CC---TTCCEEECCS
T ss_pred CCEEEecC-C-ccccCCC--Cc--CCCCEEEccCCcCCccccccCCCcEEECCCC-ccCcccC--CC---CCCCEEECcC
Confidence 35566655 2 4555554 22 4556666655 2345666666654 3444432 11 3667777765
Q ss_pred CcCCccccccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 113 WKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 113 c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
| .++.+| .++.+++|++|++++| .++.+|... .+|+.|++.++ .+..++ +++++++|++| +++
T Consensus 141 n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~-~~L~~L~L~~n-~l~~l~--~~~~l~~L~~L-~l~ 203 (454)
T 1jl5_A 141 N-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP-PSLEFIAAGNN-QLEELP--ELQNLPFLTAI-YAD 203 (454)
T ss_dssp S-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC-TTCCEEECCSS-CCSSCC--CCTTCTTCCEE-ECC
T ss_pred C-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc-ccccEEECcCC-cCCcCc--cccCCCCCCEE-ECC
Confidence 4 355566 4666677777777766 555555422 36677776654 444454 35666666666 554
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=1.6e-08 Score=88.91 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEE
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFV 109 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 109 (185)
+++|++|++++ ++++.+|. .+++|++|++++ .+++|++|+++++ .+..+|. .+ ++|+.|+
T Consensus 60 ~~~L~~L~L~~--N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~l~~l~~-~l----~~L~~L~ 127 (622)
T 3g06_A 60 PAHITTLVIPD--NNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSN-PLTHLPA-LP----SGLCKLW 127 (622)
T ss_dssp CTTCSEEEECS--CCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSC-CCCCCCC-CC----TTCCEEE
T ss_pred CCCCcEEEecC--CCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCC-cCCCCCC-CC----CCcCEEE
Confidence 36788888887 57777776 246677887776 4667777777764 4555554 22 3666666
Q ss_pred eecCcCCccccccCCCCCCCCEEeecCCCCCccCC
Q 038808 110 ILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTP 144 (185)
Q Consensus 110 l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp 144 (185)
+.++ ++..+|.. +++|++|++++| .+..+|
T Consensus 128 L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 128 IFGN-QLTSLPVL---PPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp CCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred CCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence 6654 35555543 356666666665 444444
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=6.2e-10 Score=99.37 Aligned_cols=101 Identities=21% Similarity=0.168 Sum_probs=74.8
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC---ccccCC
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG---SFPETL 151 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~---~l~~~L 151 (185)
.+++|+.|+++++ .+..+|...+. +++|+.|+++++ .+..+|..++.+++|++|++++| .+..+|. .++ +|
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~~~~~~--l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~-~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNISANIFK--YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF-QL 295 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCCGGGGG--CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT-TC
T ss_pred cCCCCcEEECCCC-CCCCCChhhcC--CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC-CC
Confidence 4677888888875 45677765554 568888888775 56678888888888888888888 6777776 344 88
Q ss_pred ceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 152 RKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 152 ~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+.|++.++ .+..+|. ++.++++|+.| ++++
T Consensus 296 ~~L~L~~N-~l~~lp~-~~~~l~~L~~L-~L~~ 325 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPW-EFGNLCNLQFL-GVEG 325 (727)
T ss_dssp SEEECCSS-CCCCCCS-STTSCTTCCCE-ECTT
T ss_pred CEEECCCC-CCCccCh-hhhcCCCccEE-eCCC
Confidence 88888765 5677776 48888888888 7764
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=1.1e-09 Score=80.84 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKI 115 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 115 (185)
..+++|++|++++ ++++.+|. +..+ .++|+.|+++++ .+..++ .+. .+++|+.|+++++ .
T Consensus 16 ~~~~~L~~L~l~~--n~l~~i~~--~~~~-----------~~~L~~L~Ls~N-~l~~~~--~l~-~l~~L~~L~Ls~N-~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRG--YKIPVIEN--LGAT-----------LDQFDAIDFSDN-EIRKLD--GFP-LLRRLKTLLVNNN-R 75 (176)
T ss_dssp ECTTSCEEEECTT--SCCCSCCC--GGGG-----------TTCCSEEECCSS-CCCEEC--CCC-CCSSCCEEECCSS-C
T ss_pred CCcCCceEEEeeC--CCCchhHH--hhhc-----------CCCCCEEECCCC-CCCccc--ccc-cCCCCCEEECCCC-c
Confidence 4577899999998 57877754 4433 235556666554 344441 111 2346666666654 3
Q ss_pred CccccccC-CCCCCCCEEeecCCCCCccCCC-----ccccCCceeeeecCCCCCCCchh---hccCCCccccccccc
Q 038808 116 LEVIPNLR-HSLSFLTELFIQECPKLVSTPG-----SFPETLRKLSIVSCHKFRPRRDW---RLHKLENLRSLINIE 183 (185)
Q Consensus 116 L~~lp~~~-~~l~~L~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l~~~~~~---~l~~l~sL~~L~~l~ 183 (185)
+..+|..+ ..+++|++|++++| .+..+|. .++ +|+.|++.+++ +..++.. .+..+++|+.| +++
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~-~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L-d~~ 148 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK-SLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL-DFQ 148 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT-TCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE-TTE
T ss_pred ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC-CCCEEEecCCC-CCCcHhHHHHHHHHCCcccee-CCC
Confidence 55555443 56666666666666 4555543 223 66666665543 3344432 35566666666 543
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=5.8e-09 Score=84.22 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccccc-CCCCCCCC-EEeecCCCCCccCCC-c---ccc
Q 038808 76 HMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNL-RHSLSFLT-ELFIQECPKLVSTPG-S---FPE 149 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~-~~~l~~L~-~L~l~~c~~L~~lp~-~---l~~ 149 (185)
+++|+.+++.++ .++.++...|. .+++|+.+++.+ +++.++.. +.++++|+ .+.+.+ .++.++. . ++
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~-~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~- 297 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFA-QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD- 297 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTT-TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCT-
T ss_pred cCCCeEEECCCC-CcceecHhhhh-CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCc-
Confidence 567788888763 47788877775 567888888866 37777654 67888888 888876 6677765 2 33
Q ss_pred CCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 150 TLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
+|+.+++.+ +++..++..+|.++++|+++
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred cCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 788888744 56777777788888888877
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=4.2e-09 Score=82.78 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC---------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK---------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~---------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
.+..+++|++|++++ ++++.++. +..+++|+.|++++ ..++|++|++++| .+..++. +. .+++
T Consensus 58 ~l~~l~~L~~L~L~~--N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N-~l~~~~~--l~-~l~~ 129 (263)
T 1xeu_A 58 GMQFFTNLKELHLSH--NQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN-ELRDTDS--LI-HLKN 129 (263)
T ss_dssp TGGGCTTCCEEECCS--SCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSS-CCSBSGG--GT-TCTT
T ss_pred HHhhCCCCCEEECCC--CccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCC-ccCCChh--hc-Cccc
Confidence 456789999999998 68999887 88899999999998 2278999999986 5666643 21 2569
Q ss_pred ccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCceeeeecCC
Q 038808 105 LKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKLSIVSCH 160 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L~l~~c~ 160 (185)
|+.|+++++ +++.++ .+..+++|++|++++| .+..++. .++ +|+.|++.+++
T Consensus 130 L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~-~L~~L~l~~N~ 183 (263)
T 1xeu_A 130 LEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLK-KVNWIDLTGQK 183 (263)
T ss_dssp CCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCC-CCCEEEEEEEE
T ss_pred ccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcchHHhccCC-CCCEEeCCCCc
Confidence 999999875 577776 6788999999999998 6666654 456 99999998753
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=9.9e-09 Score=77.04 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=73.6
Q ss_pred CEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc-
Q 038808 42 DHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP- 120 (185)
Q Consensus 42 ~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp- 120 (185)
+.+++++ ++++.+|.+ ++ ++|++|+++++ .+..+|.. +. .+++|+.|+++++ .+..++
T Consensus 13 ~~l~~~~--~~l~~ip~~-~~--------------~~l~~L~L~~n-~i~~ip~~-~~-~l~~L~~L~Ls~N-~i~~i~~ 71 (193)
T 2wfh_A 13 TVVRCSN--KGLKVLPKG-IP--------------RDVTELYLDGN-QFTLVPKE-LS-NYKHLTLIDLSNN-RISTLSN 71 (193)
T ss_dssp TEEECTT--SCCSSCCSC-CC--------------TTCCEEECCSS-CCCSCCGG-GG-GCTTCCEEECCSS-CCCCCCT
T ss_pred CEEEcCC--CCCCcCCCC-CC--------------CCCCEEECCCC-cCchhHHH-hh-cccCCCEEECCCC-cCCEeCH
Confidence 4566666 567777753 22 35666666653 45555532 21 2457778877764 455554
Q ss_pred ccCCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 121 NLRHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 121 ~~~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
..+..+++|++|+++++ .+..++. +++ +|+.|++.+ +.+..++...+..+++|++| ++++
T Consensus 72 ~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~-~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L-~L~~ 135 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYN-RLRCIPPRTFDGLK-SLRLLSLHG-NDISVVPEGAFNDLSALSHL-AIGA 135 (193)
T ss_dssp TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCT-TCCEEECCS-SCCCBCCTTTTTTCTTCCEE-ECCS
T ss_pred hHccCCCCCCEEECCCC-ccCEeCHHHhCCCC-CCCEEECCC-CCCCeeChhhhhcCccccEE-EeCC
Confidence 34677778888888777 5666665 234 777777766 45666666567777777777 6654
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=8.8e-09 Score=77.11 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCc
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWK 114 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 114 (185)
+..+++|++|++++ ++++.++++.|..+ ++|++|+++++ .+..++...+. .+++|++|+++++.
T Consensus 50 ~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l------------~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 50 FGRLPHLVKLELKR--NQLTGIEPNAFEGA------------SHIQELQLGEN-KIKEISNKMFL-GLHQLKTLNLYDNQ 113 (192)
T ss_dssp GGGCTTCCEEECCS--SCCCCBCTTTTTTC------------TTCCEEECCSC-CCCEECSSSST-TCTTCCEEECCSSC
T ss_pred cccCCCCCEEECCC--CCCCCcCHhHcCCc------------ccCCEEECCCC-cCCccCHHHhc-CCCCCCEEECCCCc
Confidence 56789999999999 78999877678875 77888888874 57777765543 35699999998864
Q ss_pred CCcc-ccccCCCCCCCCEEeecCCCC
Q 038808 115 ILEV-IPNLRHSLSFLTELFIQECPK 139 (185)
Q Consensus 115 ~L~~-lp~~~~~l~~L~~L~l~~c~~ 139 (185)
+.. .|..+..+++|++|++++++.
T Consensus 114 -l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 114 -ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred -CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 554 477888999999999999843
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=7.1e-11 Score=102.74 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCccCCC--ccccCCcee
Q 038808 77 MSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPG--SFPETLRKL 154 (185)
Q Consensus 77 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~~L~~L 154 (185)
..|+.|+++++ .+..+|. +. .+++|+.|+++++ .+..+|..++.+++|++|++++| .++.+|. .++ +|+.|
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~--~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~-~L~~L 513 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH--LE-QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDGVANLP-RLQEL 513 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC--GG-GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCS-SCCEE
T ss_pred cCceEEEecCC-CCCCCcC--cc-ccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCcccCCCC-CCcEE
Confidence 36888999885 6777765 22 2568999999875 57788988999999999999988 7777876 455 89999
Q ss_pred eeecCCCCCCCc-hhhccCCCcccccccccC
Q 038808 155 SIVSCHKFRPRR-DWRLHKLENLRSLINIED 184 (185)
Q Consensus 155 ~l~~c~~l~~~~-~~~l~~l~sL~~L~~l~~ 184 (185)
++.++ .+..+. +..+.++++|+.| ++++
T Consensus 514 ~Ls~N-~l~~~~~p~~l~~l~~L~~L-~L~~ 542 (567)
T 1dce_A 514 LLCNN-RLQQSAAIQPLVSCPRLVLL-NLQG 542 (567)
T ss_dssp ECCSS-CCCSSSTTGGGGGCTTCCEE-ECTT
T ss_pred ECCCC-CCCCCCCcHHHhcCCCCCEE-EecC
Confidence 99774 566663 3478889999998 8764
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=1.4e-08 Score=88.47 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----CCC----CCcEEeeeCCCCCcccCCCCCCCCCCCccEEE
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----DHM----SLAILDIKQCPKIVSFPERGLPLATPNLKLFV 109 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----~l~----~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 109 (185)
+++|++|++++ ++++.+| +. +++|+.|++++ .++ +|++|+++++ .+..+|. .+ ++|+.|+
T Consensus 79 ~~~L~~L~Ls~--N~l~~ip-~~---l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N-~l~~lp~-~l----~~L~~L~ 146 (571)
T 3cvr_A 79 PPQITVLEITQ--NALISLP-EL---PASLEYLDACDNRLSTLPELPASLKHLDVDNN-QLTMLPE-LP----ALLEYIN 146 (571)
T ss_dssp CTTCSEEECCS--SCCSCCC-CC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC-CC----TTCCEEE
T ss_pred cCCCCEEECcC--CCCcccc-cc---cCCCCEEEccCCCCCCcchhhcCCCEEECCCC-cCCCCCC-cC----ccccEEe
Confidence 46677777777 5677777 22 35667777776 122 6777777774 4656665 33 4788888
Q ss_pred eecCcCCccccccCCCCCCCCEEeecCCCCCccCCCccccCCceeeeecCCCCCCCchhhccCCCcc-------cccccc
Q 038808 110 ILDWKILEVIPNLRHSLSFLTELFIQECPKLVSTPGSFPETLRKLSIVSCHKFRPRRDWRLHKLENL-------RSLINI 182 (185)
Q Consensus 110 l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~lp~~l~~~L~~L~l~~c~~l~~~~~~~l~~l~sL-------~~L~~l 182 (185)
++++ .++.+|. .+++|++|++++| .+..+|. ++.+|+.|++.++ .+..+|. +.. +| +.| ++
T Consensus 147 Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L-~L 214 (571)
T 3cvr_A 147 ADNN-QLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LPESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFF-RC 214 (571)
T ss_dssp CCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSS-CCSSCCC--CC----------CCEEE-EC
T ss_pred CCCC-ccCcCCC---cCCCcCEEECCCC-CCCCcch-hhCCCCEEECcCC-CCCchhh--HHH--hhhcccccceEE-ec
Confidence 8764 4666765 4678888888887 6667776 4458888888664 5666664 333 55 766 66
Q ss_pred cC
Q 038808 183 ED 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 215 s~ 216 (571)
T 3cvr_A 215 RE 216 (571)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=7.2e-09 Score=83.69 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCccEEEeecCcCCcccccc-CCCCCCCCEEeecCCCCCccCCC-ccc--cCCc-eeeeecCCCCCCCchhhccCCCcc
Q 038808 102 TPNLKLFVILDWKILEVIPNL-RHSLSFLTELFIQECPKLVSTPG-SFP--ETLR-KLSIVSCHKFRPRRDWRLHKLENL 176 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~-~L~l~~c~~l~~~~~~~l~~l~sL 176 (185)
+++|+.+++.++ +++.+|.. +.++++|+++++.++ ++.++. .|- .+|+ .+.+.+ +++.++..+|.++++|
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 346777777653 36666654 677888888888764 777776 332 1688 888865 6777777788889999
Q ss_pred ccccccc
Q 038808 177 RSLINIE 183 (185)
Q Consensus 177 ~~L~~l~ 183 (185)
+++ ++.
T Consensus 300 ~~l-~l~ 305 (329)
T 3sb4_A 300 RYV-LAT 305 (329)
T ss_dssp EEE-EEC
T ss_pred CEE-EeC
Confidence 888 774
No 120
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=2.5e-08 Score=73.32 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=76.3
Q ss_pred CCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccc
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVI 119 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~l 119 (185)
..+.+++++ ++++.+|.+ ++ ++|++|+++++ .+..++...+. .+++|++|+++++ ++..+
T Consensus 10 ~~~~l~~s~--n~l~~ip~~-~~--------------~~l~~L~L~~N-~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l 69 (170)
T 3g39_A 10 SGTTVDCSG--KSLASVPTG-IP--------------TTTQVLYLYDN-QITKLEPGVFD-RLTQLTRLDLDNN-QLTVL 69 (170)
T ss_dssp ETTEEECTT--SCCSSCCSC-CC--------------TTCSEEECCSS-CCCCCCTTTTT-TCTTCSEEECCSS-CCCCC
T ss_pred CCCEEEeCC--CCcCccCcc-CC--------------CCCcEEEcCCC-cCCccChhhhc-CcccCCEEECCCC-CcCcc
Confidence 468899998 789988863 22 57888899874 67777665543 3669999999875 67787
Q ss_pred ccc-CCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecC
Q 038808 120 PNL-RHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSC 159 (185)
Q Consensus 120 p~~-~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c 159 (185)
|.. +..+++|++|+++++ .+..+|. .++ +|+.|++.+.
T Consensus 70 ~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-~L~~L~L~~N 112 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLK-SLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCC-CCCEEEeCCC
Confidence 765 579999999999998 7888876 244 8999999874
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=3.3e-08 Score=73.03 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc
Q 038808 41 LDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP 120 (185)
Q Consensus 41 L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp 120 (185)
-+.+++++ ++++.+|.+ ++ ++|++|+++++ .+..++...+. .+++|+.|+++++ +++.+|
T Consensus 14 ~~~l~~~~--n~l~~iP~~-~~--------------~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~i~ 73 (174)
T 2r9u_A 14 QTLVNCQN--IRLASVPAG-IP--------------TDKQRLWLNNN-QITKLEPGVFD-HLVNLQQLYFNSN-KLTAIP 73 (174)
T ss_dssp SSEEECCS--SCCSSCCSC-CC--------------TTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC
T ss_pred CcEEEeCC--CCCCccCCC-cC--------------CCCcEEEeCCC-CccccCHHHhc-CCcCCCEEECCCC-CCCccC
Confidence 47888888 788888873 33 57888888874 57777665543 3669999999885 688888
Q ss_pred cc-CCCCCCCCEEeecCCCCCccCCC----ccccCCceeeeecCCCCCCC
Q 038808 121 NL-RHSLSFLTELFIQECPKLVSTPG----SFPETLRKLSIVSCHKFRPR 165 (185)
Q Consensus 121 ~~-~~~l~~L~~L~l~~c~~L~~lp~----~l~~~L~~L~l~~c~~l~~~ 165 (185)
.. +..+++|++|+++++ .+..+|. .++ +|+.|++.++ .+...
T Consensus 74 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~-~L~~L~L~~N-~~~c~ 120 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLK-SLTHIYLYNN-PWDCE 120 (174)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT-TCSEEECCSS-CBCTT
T ss_pred hhHhCCcchhhEEECCCC-ccceeCHHHhcccc-CCCEEEeCCC-Ccccc
Confidence 76 578999999999998 7888886 244 8999999874 34433
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=2.9e-08 Score=72.32 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=78.0
Q ss_pred CCCCcEEeeeCCCCCc--ccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCcc-CCC--c-ccc
Q 038808 76 HMSLAILDIKQCPKIV--SFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVS-TPG--S-FPE 149 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~--~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~-lp~--~-l~~ 149 (185)
.++|++|++++|. +. .+|.... .+++|+.|++.+|. ++.+ ..+..+++|++|++++| .+.. +|. + ++
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~--~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~- 95 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTA--EFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLP- 95 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCG--GGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCT-
T ss_pred cccCCEEECCCCC-CChhhHHHHHH--hCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCC-
Confidence 4789999999875 55 6665422 25699999999875 7777 77889999999999999 5666 555 2 56
Q ss_pred CCceeeeecCCCCCCCch-hhccCCCcccccccccC
Q 038808 150 TLRKLSIVSCHKFRPRRD-WRLHKLENLRSLINIED 184 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~~-~~l~~l~sL~~L~~l~~ 184 (185)
+|+.|++.+| .+..++. ..+.++++|++| ++++
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L-~l~~ 129 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSL-DLFN 129 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEE-ECCS
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEE-EeeC
Confidence 9999999886 5777653 478899999999 8865
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.76 E-value=6.8e-09 Score=92.66 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLAT 102 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 102 (185)
.+..+++|+.|++++ +++..+|...+ .+++|++|++++ .+++|+.|+|+++ .+..+|..... +
T Consensus 219 ~~~~l~~L~~L~Ls~--n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~--l 292 (727)
T 4b8c_D 219 SKYDDQLWHALDLSN--LQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS--C 292 (727)
T ss_dssp ---CCCCCCEEECTT--SCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG--G
T ss_pred hhccCCCCcEEECCC--CCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC--C
Confidence 345566666666666 45666665333 444445544444 3444444444443 23344332211 3
Q ss_pred CCccEEEeecCcCCccccccCCCCCCCCEEeecCC
Q 038808 103 PNLKLFVILDWKILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 103 ~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
++|++|++.++ .+..+|..++.+++|++|++++|
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 34444444443 34444444444444444444444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.75 E-value=2e-08 Score=87.37 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccc
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVI 119 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~l 119 (185)
.|+.|++++ ++++.+|. +..+ ++|+.|+++++ .+..+|..... +++|+.|+++++ .++.+
T Consensus 442 ~L~~L~Ls~--n~l~~lp~--~~~l------------~~L~~L~Ls~N-~l~~lp~~~~~--l~~L~~L~Ls~N-~l~~l 501 (567)
T 1dce_A 442 DVRVLHLAH--KDLTVLCH--LEQL------------LLVTHLDLSHN-RLRALPPALAA--LRCLEVLQASDN-ALENV 501 (567)
T ss_dssp TCSEEECTT--SCCSSCCC--GGGG------------TTCCEEECCSS-CCCCCCGGGGG--CTTCCEEECCSS-CCCCC
T ss_pred CceEEEecC--CCCCCCcC--cccc------------ccCcEeecCcc-cccccchhhhc--CCCCCEEECCCC-CCCCC
Confidence 488888888 68888775 6654 77888888875 56677763333 569999999875 57778
Q ss_pred cccCCCCCCCCEEeecCCCCCccC--CC---ccccCCceeeeecCCCCCCCchh---hccCCCccccc
Q 038808 120 PNLRHSLSFLTELFIQECPKLVST--PG---SFPETLRKLSIVSCHKFRPRRDW---RLHKLENLRSL 179 (185)
Q Consensus 120 p~~~~~l~~L~~L~l~~c~~L~~l--p~---~l~~~L~~L~l~~c~~l~~~~~~---~l~~l~sL~~L 179 (185)
| .++.+++|++|++++| .+..+ |. .++ +|+.|++.+++ +...++. .+..+++|+.|
T Consensus 502 p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~-~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCP-RLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCT-TCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCC-CCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 8 7889999999999988 77777 54 345 89999997753 5444321 23347777776
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=7e-08 Score=70.87 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILE 117 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~ 117 (185)
+++|++|++++ ++++.++++.|..+ ++|++|+++++ .+..++.+.+. .+++|+.|+++++ +++
T Consensus 29 ~~~l~~L~L~~--N~i~~~~~~~~~~l------------~~L~~L~Ls~N-~l~~l~~~~f~-~l~~L~~L~L~~N-~l~ 91 (170)
T 3g39_A 29 PTTTQVLYLYD--NQITKLEPGVFDRL------------TQLTRLDLDNN-QLTVLPAGVFD-KLTQLTQLSLNDN-QLK 91 (170)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTC------------TTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEcCC--CcCCccChhhhcCc------------ccCCEEECCCC-CcCccChhhcc-CCCCCCEEECCCC-ccC
Confidence 58999999999 89999988788865 78888888874 68888876653 3669999999875 688
Q ss_pred ccccc-CCCCCCCCEEeecCCC
Q 038808 118 VIPNL-RHSLSFLTELFIQECP 138 (185)
Q Consensus 118 ~lp~~-~~~l~~L~~L~l~~c~ 138 (185)
.+|.. +..+++|++|++++++
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhcCCCCCCEEEeCCCC
Confidence 87764 8899999999999984
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=1.4e-07 Score=69.64 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCc
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILE 117 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~ 117 (185)
.++|++|++++ ++++.++++.|.++ ++|++|+++++ .+..+|.+.+. .+++|+.|+++++ ++.
T Consensus 32 ~~~L~~L~Ls~--N~l~~~~~~~~~~l------------~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 32 PTDKQRLWLNN--NQITKLEPGVFDHL------------VNLQQLYFNSN-KLTAIPTGVFD-KLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTC------------TTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEeCC--CCccccCHHHhcCC------------cCCCEEECCCC-CCCccChhHhC-CcchhhEEECCCC-ccc
Confidence 58999999999 89999988788875 78888888875 68888876553 3569999999874 688
Q ss_pred ccccc-CCCCCCCCEEeecCCCCCccCC
Q 038808 118 VIPNL-RHSLSFLTELFIQECPKLVSTP 144 (185)
Q Consensus 118 ~lp~~-~~~l~~L~~L~l~~c~~L~~lp 144 (185)
.+|.. +..+++|++|+++++ .+...+
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred eeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 88875 889999999999998 444443
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=2.2e-08 Score=73.65 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcc
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEV 118 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~ 118 (185)
++|++|++++ ++++.++ .+..+ ++|++|+++++ .+..+|.+.+. .+++|+.|+++++ .+..
T Consensus 42 ~~L~~L~Ls~--N~l~~~~--~l~~l------------~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~i~~ 102 (176)
T 1a9n_A 42 DQFDAIDFSD--NEIRKLD--GFPLL------------RRLKTLLVNNN-RICRIGEGLDQ-ALPDLTELILTNN-SLVE 102 (176)
T ss_dssp TCCSEEECCS--SCCCEEC--CCCCC------------SSCCEEECCSS-CCCEECSCHHH-HCTTCCEEECCSC-CCCC
T ss_pred CCCCEEECCC--CCCCccc--ccccC------------CCCCEEECCCC-cccccCcchhh-cCCCCCEEECCCC-cCCc
Confidence 4888999988 5787773 46654 77888888875 57777654321 2458999999875 5677
Q ss_pred ccc--cCCCCCCCCEEeecCCCCCccCCC-------ccccCCceeeeecCC
Q 038808 119 IPN--LRHSLSFLTELFIQECPKLVSTPG-------SFPETLRKLSIVSCH 160 (185)
Q Consensus 119 lp~--~~~~l~~L~~L~l~~c~~L~~lp~-------~l~~~L~~L~l~~c~ 160 (185)
+|. .+..+++|++|++++| .+..+|. .+| +|+.|++.++.
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~ 151 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVP-QVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCT-TCSEETTEECC
T ss_pred chhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCC-ccceeCCCcCC
Confidence 776 6788899999999988 5566664 234 88888887654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=3e-08 Score=70.80 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCCCcEEeeeCCCCCc--ccCCCCCCCCCCCccEEEeecCcCCccccccCCCCCCCCEEeecCCCCCcc-CCC---cccc
Q 038808 76 HMSLAILDIKQCPKIV--SFPERGLPLATPNLKLFVILDWKILEVIPNLRHSLSFLTELFIQECPKLVS-TPG---SFPE 149 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~--~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L~~-lp~---~l~~ 149 (185)
.++|++|++++|. +. .+|..... +++|+.|++.+| .+..+ ..++.+++|++|++++| .+.. +|. .++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~--l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~- 88 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDE--FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCP- 88 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTT--CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCT-
T ss_pred CccCeEEEccCCc-CChhHHHHHHhh--cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCC-
Confidence 4689999999874 55 66653222 569999999886 57766 67889999999999999 5665 665 256
Q ss_pred CCceeeeecCCCCCCCc-hhhccCCCcccccccccC
Q 038808 150 TLRKLSIVSCHKFRPRR-DWRLHKLENLRSLINIED 184 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~-~~~l~~l~sL~~L~~l~~ 184 (185)
+|+.|++.++. +..++ ...+.++++|++| ++++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L-~l~~ 122 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSL-DLFN 122 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEE-ECTT
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEE-eCcC
Confidence 99999998864 66654 2478899999999 8865
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.60 E-value=2.8e-09 Score=87.67 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=37.6
Q ss_pred CccEEEeecCcCCc------cccccCCCCCCCCEEeecCCCCC-----ccCCC---ccccCCceeeeecCCCCCCC----
Q 038808 104 NLKLFVILDWKILE------VIPNLRHSLSFLTELFIQECPKL-----VSTPG---SFPETLRKLSIVSCHKFRPR---- 165 (185)
Q Consensus 104 ~L~~L~l~~c~~L~------~lp~~~~~l~~L~~L~l~~c~~L-----~~lp~---~l~~~L~~L~l~~c~~l~~~---- 165 (185)
+|+.|++++|. +. .+|..+..+++|++|++++| .+ ..+|. .++ +|+.|++.+|. +...
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWP-NLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCT-TCCEEECTTCC-CCHHHHHH
T ss_pred CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCC-CcCEEECCCCC-CchhhHHH
Confidence 56666665542 33 12224556666666666666 33 23332 233 66666666553 3221
Q ss_pred -chhhc--cCCCcccccccccC
Q 038808 166 -RDWRL--HKLENLRSLINIED 184 (185)
Q Consensus 166 -~~~~l--~~l~sL~~L~~l~~ 184 (185)
+. ++ +++++|++| ++++
T Consensus 264 l~~-~l~~~~~~~L~~L-~L~~ 283 (386)
T 2ca6_A 264 VVD-AFSKLENIGLQTL-RLQY 283 (386)
T ss_dssp HHH-HHHTCSSCCCCEE-ECCS
T ss_pred HHH-HHhhccCCCeEEE-ECcC
Confidence 11 33 236666666 6653
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.59 E-value=3.9e-09 Score=90.94 Aligned_cols=137 Identities=13% Similarity=0.195 Sum_probs=90.5
Q ss_pred CCCCCCCCEEEEccccccccccCCC--C------------CCCCCCccEEEcCC-------------CCCCCcEEeeeCC
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITR--P------------IPKSPNLDSVSITK-------------DHMSLAILDIKQC 87 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~--~------------~~~l~~L~~L~l~~-------------~l~~L~~L~l~~c 87 (185)
...|++|++|++++ |+.+..+... . +..+++|++|++++ .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKG-KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEEC-SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccC-CCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35689999999999 8877654320 1 12457889999887 5789999999998
Q ss_pred CCCcc--cCCCCCCCCCCCccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCccCCC-c-------cccCCc
Q 038808 88 PKIVS--FPERGLPLATPNLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVSTPG-S-------FPETLR 152 (185)
Q Consensus 88 ~~l~~--l~~~~~~~~~~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~-------l~~~L~ 152 (185)
..+.. ++.-. ..+++|++|++.+|. +. .++.....+++|++|++++|. ..+.. . ++ +|+
T Consensus 141 ~~~~~~~l~~~~--~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~-~L~ 214 (594)
T 2p1m_B 141 EGFSTDGLAAIA--ATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCP-NLK 214 (594)
T ss_dssp EEEEHHHHHHHH--HHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCT-TCC
T ss_pred CCCCHHHHHHHH--HhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCC-CCc
Confidence 66554 22111 124599999998876 32 234444578899999999885 22222 1 24 899
Q ss_pred eeeeecCCCCCCCchhhccCCCccccc
Q 038808 153 KLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 153 ~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
.|++.+|..+..++. .+.++++|++|
T Consensus 215 ~L~L~~~~~~~~l~~-~~~~~~~L~~L 240 (594)
T 2p1m_B 215 SLKLNRAVPLEKLAT-LLQRAPQLEEL 240 (594)
T ss_dssp EEECCTTSCHHHHHH-HHHHCTTCSEE
T ss_pred EEecCCCCcHHHHHH-HHhcCCcceEc
Confidence 999988855544333 45556666666
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=7.3e-07 Score=74.28 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=57.1
Q ss_pred CCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCC
Q 038808 33 TTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLA 101 (185)
Q Consensus 33 ~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 101 (185)
..+..+++|+.+++.+ ++++.++.+.|.. .+|+.+.+.. ++++|+.+.+.+ +++.++...|..
T Consensus 174 ~aF~~c~~L~~l~l~~--n~l~~I~~~aF~~-~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~- 247 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSK--TKITKLPASTFVY-AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE- 247 (401)
T ss_dssp STTTTCTTCCEEECTT--SCCSEECTTTTTT-CCCSEEECCTTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-
T ss_pred HHhhCcccCCeeecCC--CcceEechhhEee-cccCEEEeCCchheehhhHhhCCCCCCEEecCC--CccCcccccccc-
Confidence 4556778888888876 6777777766663 6677776654 456667666654 455666555551
Q ss_pred CCCccEEEeecCcCCccccc-cCCCCCCCCEEeecC
Q 038808 102 TPNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQE 136 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~ 136 (185)
.+|+.+.+. .+++.++. .+.++++|+.+.+.+
T Consensus 248 -~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 248 -SGITTVKLP--NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp -CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEES
T ss_pred -CCccEEEeC--CCccEEChhHhhCCCCCCEEEeCC
Confidence 356666653 23444433 344555666665544
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=1e-08 Score=88.24 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=16.9
Q ss_pred CCceeeeecCCCCCCC-chhhccCCCccccccccc
Q 038808 150 TLRKLSIVSCHKFRPR-RDWRLHKLENLRSLINIE 183 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~-~~~~l~~l~sL~~L~~l~ 183 (185)
+|++|++.+|. +... ....+.++++|++| ++.
T Consensus 290 ~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L-~l~ 322 (594)
T 2p1m_B 290 RLTTLNLSYAT-VQSYDLVKLLCQCPKLQRL-WVL 322 (594)
T ss_dssp TCCEEECTTCC-CCHHHHHHHHTTCTTCCEE-EEE
T ss_pred CCCEEEccCCC-CCHHHHHHHHhcCCCcCEE-eCc
Confidence 67777776665 3211 11123456666666 554
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.54 E-value=3.9e-09 Score=86.82 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=58.3
Q ss_pred CCCccEEEeecCcCC-----ccccccCCCCCCCCEEeecCCCCCccC-----CCc-----cccCCceeeeecCCCCCC--
Q 038808 102 TPNLKLFVILDWKIL-----EVIPNLRHSLSFLTELFIQECPKLVST-----PGS-----FPETLRKLSIVSCHKFRP-- 164 (185)
Q Consensus 102 ~~~L~~L~l~~c~~L-----~~lp~~~~~l~~L~~L~l~~c~~L~~l-----p~~-----l~~~L~~L~l~~c~~l~~-- 164 (185)
+++|+.|++++|. + ..+|..+..+++|++|++++| .+... +.. ++ +|+.|++.+|. +..
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~-~L~~L~L~~n~-i~~~g 290 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENI-GLQTLRLQYNE-IELDA 290 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSC-CCCEEECCSSC-CBHHH
T ss_pred CCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCC-CeEEEECcCCc-CCHHH
Confidence 5699999999875 4 567888889999999999999 45432 221 34 89999998864 544
Q ss_pred ---CchhhccCCCcccccccccC
Q 038808 165 ---RRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 165 ---~~~~~l~~l~sL~~L~~l~~ 184 (185)
++.....++++|++| ++++
T Consensus 291 ~~~l~~~l~~~l~~L~~L-~l~~ 312 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFL-ELNG 312 (386)
T ss_dssp HHHHHHHHHHHCTTCCEE-ECTT
T ss_pred HHHHHHHHHhcCCCceEE-EccC
Confidence 665433668999999 8765
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=4.7e-07 Score=73.20 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=46.2
Q ss_pred CCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCc
Q 038808 35 TNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWK 114 (185)
Q Consensus 35 ~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 114 (185)
+..+++|++|++++ +++++.+|.+.|..+ ++|+.|+++++ .+..++...|. .+++|+.|++++ +
T Consensus 27 l~~~~~L~~L~l~~-~n~l~~~~~~~~~~l------------~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 27 LPGAENLTELYIEN-QQHLQHLELRDLRGL------------GELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSF-N 90 (347)
T ss_dssp SCSCSCCSEEECCS-CSSCCEECGGGSCSC------------CCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCS-S
T ss_pred CCCCCCeeEEEccC-CCCCCCcChhHhccc------------cCCCEEECCCC-ccceeCHHHhc-CCcCCCEEeCCC-C
Confidence 34455556666654 355555555445543 55666666653 45555554332 244666666655 3
Q ss_pred CCccccccCCCCCCCCEEeecCC
Q 038808 115 ILEVIPNLRHSLSFLTELFIQEC 137 (185)
Q Consensus 115 ~L~~lp~~~~~l~~L~~L~l~~c 137 (185)
++..+|.......+|+.|++.++
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 45555554332223666666665
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=6e-07 Score=72.55 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=78.5
Q ss_pred CEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccc
Q 038808 42 DHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPN 121 (185)
Q Consensus 42 ~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~ 121 (185)
..++.++ .++++.+|. ++.+ ++|++|++++++.+..++.+.+. .+++|+.|+++++ ++..++.
T Consensus 11 ~~v~~~~-~n~l~~ip~--l~~~------------~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~ 73 (347)
T 2ifg_A 11 SGLRCTR-DGALDSLHH--LPGA------------ENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS-GLRFVAP 73 (347)
T ss_dssp SCEECCS-SCCCTTTTT--SCSC------------SCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSS-CCCEECT
T ss_pred CEEEcCC-CCCCCccCC--CCCC------------CCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCC-ccceeCH
Confidence 4567776 337999997 7764 78889999876788888875554 3669999999886 6777655
Q ss_pred -cCCCCCCCCEEeecCCCCCccCCC-ccc-cCCceeeeecCCCCC
Q 038808 122 -LRHSLSFLTELFIQECPKLVSTPG-SFP-ETLRKLSIVSCHKFR 163 (185)
Q Consensus 122 -~~~~l~~L~~L~l~~c~~L~~lp~-~l~-~~L~~L~l~~c~~l~ 163 (185)
.+..+++|++|+++++ .+..+|. .+. ..|+.|++.++ .+.
T Consensus 74 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred HHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 5789999999999998 8888887 221 15999999764 343
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.37 E-value=9.4e-08 Score=78.06 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=16.8
Q ss_pred CCCEEEEccccccccccCC----CCCCCCC-CccEEEcCC
Q 038808 40 LLDHLFLDRSCDSLKMFIT----RPIPKSP-NLDSVSITK 74 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~----~~~~~l~-~L~~L~l~~ 74 (185)
+|++|++++ ++++..+. +.+..++ +|++|++++
T Consensus 23 ~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 60 (362)
T 3goz_A 23 GVTSLDLSL--NNLYSISTVELIQAFANTPASVTSLNLSG 60 (362)
T ss_dssp TCCEEECTT--SCGGGSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred CceEEEccC--CCCChHHHHHHHHHHHhCCCceeEEECcC
Confidence 366666665 34555443 2334444 555565555
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.31 E-value=1.2e-08 Score=85.40 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCCCCEEEEccccccccc-----cCCCCCCCCCCccEEEcCC-------------CCC----CCcEEeeeCCCCCc--
Q 038808 36 NTYPLLDHLFLDRSCDSLKM-----FITRPIPKSPNLDSVSITK-------------DHM----SLAILDIKQCPKIV-- 91 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~-----lp~~~~~~l~~L~~L~l~~-------------~l~----~L~~L~l~~c~~l~-- 91 (185)
..+++|++|++++ | +++. ++. .+..+++|++|++++ .++ +|++|++++|. +.
T Consensus 25 ~~~~~L~~L~L~~-~-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 100 (461)
T 1z7x_W 25 PLLQQCQVVRLDD-C-GLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA 100 (461)
T ss_dssp HHHTTCSEEEEES-S-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred hhcCCccEEEccC-C-CCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHH
Confidence 4578899999998 5 4553 332 355567888998887 344 68899998874 44
Q ss_pred ---ccCCCCCCCCCCCccEEEeecCcCCcc-----cccc-CCCCCCCCEEeecCCCCCccC-----CC---ccccCCcee
Q 038808 92 ---SFPERGLPLATPNLKLFVILDWKILEV-----IPNL-RHSLSFLTELFIQECPKLVST-----PG---SFPETLRKL 154 (185)
Q Consensus 92 ---~l~~~~~~~~~~~L~~L~l~~c~~L~~-----lp~~-~~~l~~L~~L~l~~c~~L~~l-----p~---~l~~~L~~L 154 (185)
.++.... .+++|++|+++++. +.. +... ....++|++|++++| .+... +. .++ +|++|
T Consensus 101 ~~~~l~~~l~--~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~-~L~~L 175 (461)
T 1z7x_W 101 GCGVLSSTLR--TLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP-DFKEL 175 (461)
T ss_dssp GHHHHHHHTT--SCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCT-TCCEE
T ss_pred HHHHHHHHHc--cCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCC-CCCEE
Confidence 2222111 24588999988765 432 2222 234567899999888 55432 11 124 88899
Q ss_pred eeecCCCCCCCchhhcc-----CCCcccccccccC
Q 038808 155 SIVSCHKFRPRRDWRLH-----KLENLRSLINIED 184 (185)
Q Consensus 155 ~l~~c~~l~~~~~~~l~-----~l~sL~~L~~l~~ 184 (185)
++.++. +.......+. ..++|++| ++++
T Consensus 176 ~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L-~L~~ 208 (461)
T 1z7x_W 176 TVSNND-INEAGVRVLCQGLKDSPCQLEAL-KLES 208 (461)
T ss_dssp ECCSSB-CHHHHHHHHHHHHHHSCCCCCEE-ECTT
T ss_pred ECcCCC-cchHHHHHHHHHHhcCCCCceEE-EccC
Confidence 988765 4322111221 35578888 7764
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.30 E-value=1.9e-07 Score=80.40 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=15.0
Q ss_pred CCceeeeecCCCCCCCc-hhhccCCCcccccccc
Q 038808 150 TLRKLSIVSCHKFRPRR-DWRLHKLENLRSLINI 182 (185)
Q Consensus 150 ~L~~L~l~~c~~l~~~~-~~~l~~l~sL~~L~~l 182 (185)
+|++|++.+|. +.... ...+.++++|++| ++
T Consensus 294 ~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L-~L 325 (592)
T 3ogk_B 294 QIRKLDLLYAL-LETEDHCTLIQKCPNLEVL-ET 325 (592)
T ss_dssp GCCEEEETTCC-CCHHHHHHHHTTCTTCCEE-EE
T ss_pred CCcEEecCCCc-CCHHHHHHHHHhCcCCCEE-ec
Confidence 66666666655 32111 1123455555555 44
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.29 E-value=3.7e-08 Score=84.86 Aligned_cols=49 Identities=22% Similarity=0.120 Sum_probs=33.6
Q ss_pred CCCCCCCEEEEccccccccccCC-CCCCCCCCccEEEcCC------------CCCCCcEEeeeC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFIT-RPIPKSPNLDSVSITK------------DHMSLAILDIKQ 86 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~-~~~~~l~~L~~L~l~~------------~l~~L~~L~l~~ 86 (185)
..+++|++|++++ |. ++.... ..+..+++|++|++.+ .+++|++|++++
T Consensus 290 ~~~~~L~~L~Ls~-~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 290 PFAAQIRKLDLLY-AL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGGCCEEEETT-CC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhcCCCcEEecCC-Cc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 3467888888888 65 543211 1245667888888865 578899998885
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.29 E-value=8.6e-08 Score=78.30 Aligned_cols=10 Identities=20% Similarity=0.082 Sum_probs=5.8
Q ss_pred CCCEEeecCC
Q 038808 128 FLTELFIQEC 137 (185)
Q Consensus 128 ~L~~L~l~~c 137 (185)
+|++|++++|
T Consensus 197 ~L~~L~Ls~N 206 (362)
T 3goz_A 197 SVTSLDLSAN 206 (362)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 5555555555
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=1.4e-05 Score=66.53 Aligned_cols=131 Identities=12% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccE
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKL 107 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~ 107 (185)
..+|+.+.+.+ +++.++...|.++++|+.+.+.. .-.+|+.+.+.+ .+..++...|. .|++|+.
T Consensus 202 ~~~L~~l~lp~---~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~-~c~~L~~ 275 (401)
T 4fdw_A 202 YAGIEEVLLPV---TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN--GVTNIASRAFY-YCPELAE 275 (401)
T ss_dssp TCCCSEEECCT---TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET--TCCEECTTTTT-TCTTCCE
T ss_pred ecccCEEEeCC---chheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC--CccEEChhHhh-CCCCCCE
Confidence 35677777654 46666666666666677776654 225566666642 45566555554 4556666
Q ss_pred EEeecCcC----Cccccc-cCCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 108 FVILDWKI----LEVIPN-LRHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 108 L~l~~c~~----L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
+.+.+... ...++. .+.++++|+.+.+.+ .++.++. .|. .+|+.+.+.+ ++..+...+|.++ +|+++
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEE
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEE
Confidence 66644211 112332 344555555555542 3444444 221 1455555522 2444444445555 55554
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=4.4e-07 Score=67.44 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=47.8
Q ss_pred CCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCC---CCCCccEEEeecCcCC
Q 038808 40 LLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPL---ATPNLKLFVILDWKIL 116 (185)
Q Consensus 40 ~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~---~~~~L~~L~l~~c~~L 116 (185)
+|+.|++++ |. ++......+.+ +++|++|++++|..+..-....+.. .+++|++|++++|+++
T Consensus 62 ~L~~LDLs~-~~-Itd~GL~~L~~------------~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATD-SC-IMSIGFDHMEG------------LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEES-CC-CCGGGGGGGTT------------CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcC-CC-ccHHHHHHhcC------------CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 577777777 64 55433322333 3677777777777665321111110 0125777777777666
Q ss_pred cccc-ccCCCCCCCCEEeecCCCCCc
Q 038808 117 EVIP-NLRHSLSFLTELFIQECPKLV 141 (185)
Q Consensus 117 ~~lp-~~~~~l~~L~~L~l~~c~~L~ 141 (185)
+.-- ..+..+++|++|++++|+.++
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 5310 123456777777777776655
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=2.3e-08 Score=74.93 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=73.9
Q ss_pred CCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKIL 116 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L 116 (185)
.+++|++|++++ ++++.+| .+.. +++|++|++++| .+..+|..... +++|+.|++++| .+
T Consensus 46 ~l~~L~~L~ls~--n~l~~l~--~~~~------------l~~L~~L~l~~n-~l~~l~~~~~~--~~~L~~L~L~~N-~l 105 (198)
T 1ds9_A 46 TLKACKHLALST--NNIEKIS--SLSG------------MENLRILSLGRN-LIKKIENLDAV--ADTLEELWISYN-QI 105 (198)
T ss_dssp HTTTCSEEECSE--EEESCCC--CHHH------------HTTCCEEEEEEE-EECSCSSHHHH--HHHCSEEEEEEE-EC
T ss_pred cCCCCCEEECCC--CCCcccc--cccc------------CCCCCEEECCCC-Ccccccchhhc--CCcCCEEECcCC-cC
Confidence 455555666555 3455544 2333 477888888775 45566542111 248889998876 56
Q ss_pred ccccccCCCCCCCCEEeecCCCCCccCCC-----ccccCCceeeeecCCCCCCCc----------hhhccCCCccccc
Q 038808 117 EVIPNLRHSLSFLTELFIQECPKLVSTPG-----SFPETLRKLSIVSCHKFRPRR----------DWRLHKLENLRSL 179 (185)
Q Consensus 117 ~~lp~~~~~l~~L~~L~l~~c~~L~~lp~-----~l~~~L~~L~l~~c~~l~~~~----------~~~l~~l~sL~~L 179 (185)
..+| .+..+++|++|++++| .+..++. .++ +|+.|++.+++ +.... ...+..+++|+.|
T Consensus 106 ~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~-~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 106 ASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALD-KLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp CCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTT-TCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCC-CCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 6676 5677888999999887 5554432 344 88888887753 32211 1236677888777
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.19 E-value=1.3e-07 Score=79.02 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=36.3
Q ss_pred CccEEEeecCcCCc----cccccCCCCCCCCEEeecCCCCCccCCC-----cc---ccCCceeeeecCCCCC-----CCc
Q 038808 104 NLKLFVILDWKILE----VIPNLRHSLSFLTELFIQECPKLVSTPG-----SF---PETLRKLSIVSCHKFR-----PRR 166 (185)
Q Consensus 104 ~L~~L~l~~c~~L~----~lp~~~~~l~~L~~L~l~~c~~L~~lp~-----~l---~~~L~~L~l~~c~~l~-----~~~ 166 (185)
+|+.|++++|.--. .++..+..+++|++|++++| .+..... .+ .++|+.|++.+|. +. .++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence 55666665553111 13333445566666666666 3332110 00 1166666666652 33 223
Q ss_pred hhhccCCCcccccccccC
Q 038808 167 DWRLHKLENLRSLINIED 184 (185)
Q Consensus 167 ~~~l~~l~sL~~L~~l~~ 184 (185)
. ++..+++|++| ++++
T Consensus 392 ~-~l~~~~~L~~L-~l~~ 407 (461)
T 1z7x_W 392 A-TLLANHSLREL-DLSN 407 (461)
T ss_dssp H-HHHHCCCCCEE-ECCS
T ss_pred H-HHHhCCCccEE-ECCC
Confidence 2 45556666666 5543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.10 E-value=5.1e-08 Score=73.05 Aligned_cols=85 Identities=19% Similarity=0.143 Sum_probs=60.9
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDW 113 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 113 (185)
.+..+++|++|++++ ++++.+|. .+.. +++|++|++++| .+..+|. +. .+++|+.|+++++
T Consensus 65 ~~~~l~~L~~L~l~~--n~l~~l~~-~~~~------------~~~L~~L~L~~N-~l~~l~~--~~-~l~~L~~L~l~~N 125 (198)
T 1ds9_A 65 SLSGMENLRILSLGR--NLIKKIEN-LDAV------------ADTLEELWISYN-QIASLSG--IE-KLVNLRVLYMSNN 125 (198)
T ss_dssp CHHHHTTCCEEEEEE--EEECSCSS-HHHH------------HHHCSEEEEEEE-ECCCHHH--HH-HHHHSSEEEESEE
T ss_pred ccccCCCCCEEECCC--CCcccccc-hhhc------------CCcCCEEECcCC-cCCcCCc--cc-cCCCCCEEECCCC
Confidence 455679999999998 57887775 2332 367888888875 4555542 11 1348999999875
Q ss_pred cCCccccc--cCCCCCCCCEEeecCCC
Q 038808 114 KILEVIPN--LRHSLSFLTELFIQECP 138 (185)
Q Consensus 114 ~~L~~lp~--~~~~l~~L~~L~l~~c~ 138 (185)
.+..++. .+..+++|++|++++|+
T Consensus 126 -~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 126 -KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4666554 67889999999999984
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=4.6e-06 Score=61.90 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred CCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc-ccCCCC----CCCCEEeecCCCCCccCCC----cc
Q 038808 77 MSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP-NLRHSL----SFLTELFIQECPKLVSTPG----SF 147 (185)
Q Consensus 77 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp-~~~~~l----~~L~~L~l~~c~~L~~lp~----~l 147 (185)
.+|++|++++|. +.......+. .+++|+.|++++|..++.-- ..+..+ ++|++|++++|+.++.--- .+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 479999999996 5543222222 46799999999998876411 112332 4799999999987763111 34
Q ss_pred ccCCceeeeecCCCCCC
Q 038808 148 PETLRKLSIVSCHKFRP 164 (185)
Q Consensus 148 ~~~L~~L~l~~c~~l~~ 164 (185)
+ +|++|++.+|+.++.
T Consensus 139 ~-~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 R-NLKYLFLSDLPGVKE 154 (176)
T ss_dssp T-TCCEEEEESCTTCCC
T ss_pred C-CCCEEECCCCCCCCc
Confidence 5 999999999998865
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=8.8e-06 Score=66.92 Aligned_cols=12 Identities=25% Similarity=0.102 Sum_probs=6.4
Q ss_pred CCCCCEEeecCC
Q 038808 126 LSFLTELFIQEC 137 (185)
Q Consensus 126 l~~L~~L~l~~c 137 (185)
+++|++|.+.+|
T Consensus 251 ~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 251 FPNLKWLGIVDA 262 (362)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCcCEEeCCCC
Confidence 455555555554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=5.3e-06 Score=68.26 Aligned_cols=118 Identities=23% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC--------------CCCCCcEEeeeCCC-------CCcccC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK--------------DHMSLAILDIKQCP-------KIVSFP 94 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~--------------~l~~L~~L~l~~c~-------~l~~l~ 94 (185)
..+|+|+.|.+++ |..+ .++. +. +++|++|++.. .+|+|++|+++.+. .+..+.
T Consensus 169 ~~~P~L~~L~L~g-~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKG-TNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEEC-CBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeC-CCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4578999999988 6433 3443 32 67889998875 58999999886321 121111
Q ss_pred CCCCCCCCCCccEEEeecCcCCccccc---cCCCCCCCCEEeecCCCCCcc-----CCCc---cccCCceeeeecCC
Q 038808 95 ERGLPLATPNLKLFVILDWKILEVIPN---LRHSLSFLTELFIQECPKLVS-----TPGS---FPETLRKLSIVSCH 160 (185)
Q Consensus 95 ~~~~~~~~~~L~~L~l~~c~~L~~lp~---~~~~l~~L~~L~l~~c~~L~~-----lp~~---l~~~L~~L~l~~c~ 160 (185)
.......+++|+.|.+.+|......+. ....+++|++|+++.| .+.. ++.+ ++ +|+.|++.+|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIK-HLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHT-TCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCC-cceEEECCCCc
Confidence 100001134999999988754321111 1235789999999876 5543 2222 34 89999997763
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=4.6e-07 Score=74.76 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=76.7
Q ss_pred CCCCCEEEEccccccccccCCCCC----C-CCCCccEEEcCC-------------CCCCCcEEeeeCCCCCcccCCCC--
Q 038808 38 YPLLDHLFLDRSCDSLKMFITRPI----P-KSPNLDSVSITK-------------DHMSLAILDIKQCPKIVSFPERG-- 97 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~~~----~-~l~~L~~L~l~~-------------~l~~L~~L~l~~c~~l~~l~~~~-- 97 (185)
.++|+.|++++ | +++......+ . ..++|++|++++ .+++|++|++++| .+.......
T Consensus 71 ~~~L~~L~Ls~-n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAG-V-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTT-S-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecC-C-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 45788888888 4 4554222111 1 225778888877 3567888888876 343221111
Q ss_pred --CCCCCCCccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCccC-----CCc--cccCCceeeeecCCCCC
Q 038808 98 --LPLATPNLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVST-----PGS--FPETLRKLSIVSCHKFR 163 (185)
Q Consensus 98 --~~~~~~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~l-----p~~--l~~~L~~L~l~~c~~l~ 163 (185)
+....++|+.|++++|. +. .++..+...++|++|++++| .+... +.. -+.+|+.|++.+|. +.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 00012378888887764 33 23444456777888888877 34321 111 11277888887653 32
Q ss_pred CCc----hhhccCCCcccccccccC
Q 038808 164 PRR----DWRLHKLENLRSLINIED 184 (185)
Q Consensus 164 ~~~----~~~l~~l~sL~~L~~l~~ 184 (185)
... ..++...++|++| ++++
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L-~Ls~ 248 (372)
T 3un9_A 225 DTAALALARAAREHPSLELL-HLYF 248 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEE-ECTT
T ss_pred HHHHHHHHHHHHhCCCCCEE-eccC
Confidence 211 1134456777777 6654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0039 Score=51.08 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=38.2
Q ss_pred CCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCCCcccccccccC
Q 038808 123 RHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIED 184 (185)
Q Consensus 123 ~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~~ 184 (185)
+.++++|+.+.+.+ .++.+.. .|- .+|+++.+- .+++.+...+|.++++|+++ ++.+
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i-~~~~ 366 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNI-EYSG 366 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEE-EESS
T ss_pred ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEE-EECC
Confidence 45567777777743 3555555 232 278888884 34777777888888988888 7654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.46 E-value=0.0017 Score=53.20 Aligned_cols=95 Identities=13% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC-ccc--cC
Q 038808 75 DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG-SFP--ET 150 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~ 150 (185)
...+|+.+.+.+ .++.++..+|. .+.+|+.+.+.+ .++.++. .+.++++|+.+.+.. .++.+.. .+- .+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~-~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFE-SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCIN 367 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTT-TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred cccccccccccc--ccceechhhhc-CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence 455666666643 45666655554 355666666642 3555543 355667777776643 2555554 221 16
Q ss_pred CceeeeecCCCCCCCchhhccCCCccccc
Q 038808 151 LRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 151 L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
|+++.+.+ +++.+. .++.++++|+++
T Consensus 368 L~~i~lp~--~~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPK--RLEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEG--GGGGGG-GGBCTTCEEEEE
T ss_pred CCEEEECC--CCEEhh-heecCCCCCcEE
Confidence 67666643 233332 356667776654
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.39 E-value=0.00081 Score=55.20 Aligned_cols=41 Identities=5% Similarity=0.080 Sum_probs=30.8
Q ss_pred CcCCCCCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC
Q 038808 31 PVTTTNTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK 74 (185)
Q Consensus 31 p~~~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~ 74 (185)
+...+..+.+|+.+.+.. +++.++...|.++.+|+.+++.+
T Consensus 63 g~~AF~~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp CTTTTTTCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCT
T ss_pred HHHHhhCCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCC
Confidence 334566778888888865 68888888888888888887755
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.29 E-value=0.0072 Score=48.98 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=22.8
Q ss_pred CCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCCCccccc
Q 038808 123 RHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSL 179 (185)
Q Consensus 123 ~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L 179 (185)
+.++++|+.+.+.++ .++.++. .+- .+|+.+.+. .+++.+...+|.++++|+++
T Consensus 282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP--TALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCCC
T ss_pred ccccccccccccccc-ccceehhhhhcCCCCCCEEEcC--ccccEEHHHHhhCCCCCCEE
Confidence 334455555555433 3444433 111 144444442 12344444444555555444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.21 E-value=0.0058 Score=49.56 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEccccccccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCC
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPN 104 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 104 (185)
..+.+|+.+.+.. +++.++...|....+|+.+.+.. ...+|+.+.+.. .+..++...|. .+++
T Consensus 214 ~~~~~l~~i~~~~---~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~-~c~~ 287 (379)
T 4h09_A 214 SYGKNLKKITITS---GVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS-GCSN 287 (379)
T ss_dssp TTCSSCSEEECCT---TCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT-TCTT
T ss_pred ccccccceeeecc---ceeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccc-cccc
Confidence 4456677666654 46666666666667777777654 456677777653 56667666664 4667
Q ss_pred ccEEEeecCcCCccccc-cCCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCC
Q 038808 105 LKLFVILDWKILEVIPN-LRHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKL 173 (185)
Q Consensus 105 L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l 173 (185)
|+.+.+.+ ..++.+++ .+.++++|+.+.+.. .++.+.. .+- .+|+.+.+.. +++.+...+|.+.
T Consensus 288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c 355 (379)
T 4h09_A 288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGS 355 (379)
T ss_dssp CCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTS
T ss_pred cccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCC
Confidence 88887754 34666654 366778888887742 3555554 221 1566665522 3444444455544
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.04 E-value=0.0066 Score=49.66 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=70.9
Q ss_pred cccccCCCCCCCCCCccEEEcCC-----------CCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEeecCcCCcccc
Q 038808 52 SLKMFITRPIPKSPNLDSVSITK-----------DHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVILDWKILEVIP 120 (185)
Q Consensus 52 ~l~~lp~~~~~~l~~L~~L~l~~-----------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~L~~lp 120 (185)
.++.+....|....+|+.+.+.. ..++|+.+.+. ..+..++...|. .|.+|+.+.+.. .++.+.
T Consensus 252 ~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~-~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 252 GVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFA-GCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTT-TCTTCCEEECCT--TCCEEC
T ss_pred cceEcccceeeecccccEEecccccceecCcccccccccccccCC--CcccccCceeec-CCCCcCEEEeCC--cccEeh
Confidence 45555555566666666666654 45777777775 357777777775 567888888853 466665
Q ss_pred c-cCCCCCCCCEEeecCCCCCccCCC-ccc--cCCceeeeecCCCCCCCchhhccCCCccccccccc
Q 038808 121 N-LRHSLSFLTELFIQECPKLVSTPG-SFP--ETLRKLSIVSCHKFRPRRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 121 ~-~~~~l~~L~~L~l~~c~~L~~lp~-~l~--~~L~~L~l~~c~~l~~~~~~~l~~l~sL~~L~~l~ 183 (185)
+ .+.++++|+++.+-. .++.+.. .|- .+|+.+++.+.. .. ..++...++|+.+ .+.
T Consensus 327 ~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~--~~~~~~~~~L~~i-~i~ 386 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQ--WNAISTDSGLQNL-PVA 386 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HH--HHTCBCCCCC-------
T ss_pred HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--ee--hhhhhccCCCCEE-EeC
Confidence 4 366788888888853 4666665 332 277877775421 11 1245556667766 553
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.91 E-value=2.7e-05 Score=64.10 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=77.6
Q ss_pred CCCCCEEEEccccccccccCCC-CCCCCCCccEEEcCC-----------------CCCCCcEEeeeCCCCCcccCCCCCC
Q 038808 38 YPLLDHLFLDRSCDSLKMFITR-PIPKSPNLDSVSITK-----------------DHMSLAILDIKQCPKIVSFPERGLP 99 (185)
Q Consensus 38 l~~L~~L~l~~~C~~l~~lp~~-~~~~l~~L~~L~l~~-----------------~l~~L~~L~l~~c~~l~~l~~~~~~ 99 (185)
.++|++|++++ | .++..... ....+++|++|++++ ..++|++|++++|. +.......+.
T Consensus 100 ~~~L~~L~Ls~-n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 176 (372)
T 3un9_A 100 RHALDEVNLAS-C-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM 176 (372)
T ss_dssp SSCEEEEECTT-C-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCceEEEecC-C-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH
Confidence 46899999999 4 56542211 123456789999998 25889999999974 5432111000
Q ss_pred ---CCCCCccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCccCCC--------ccccCCceeeeecCC
Q 038808 100 ---LATPNLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVSTPG--------SFPETLRKLSIVSCH 160 (185)
Q Consensus 100 ---~~~~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~lp~--------~l~~~L~~L~l~~c~ 160 (185)
...++|++|++++|. +. .++..+...++|++|++++| .+..... ..+ +|+.|++.+|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~-~L~~L~Ls~N~ 250 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHP-SLELLHLYFNE 250 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCS-SCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCC-CCCEEeccCCC
Confidence 013589999998875 43 24555677889999999999 5543211 123 89999998764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.13 E-value=0.001 Score=49.00 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=56.2
Q ss_pred CCCCCCCEEEEccccccccccCC----CCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCC----CCCCCCCCCccE
Q 038808 36 NTYPLLDHLFLDRSCDSLKMFIT----RPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPE----RGLPLATPNLKL 107 (185)
Q Consensus 36 ~~l~~L~~L~l~~~C~~l~~lp~----~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~~~L~~ 107 (185)
...++|++|++++ |+.+..-.. ..+... ++|++|++++|. +..-.. ..+. ..++|++
T Consensus 33 ~~~~~L~~L~L~~-n~~i~~~g~~~l~~~L~~~------------~~L~~L~Ls~n~-i~~~g~~~l~~~L~-~n~~L~~ 97 (185)
T 1io0_A 33 NNDPDLEEVNLNN-IMNIPVPTLKACAEALKTN------------TYVKKFSIVGTR-SNDPVAFALAEMLK-VNNTLKS 97 (185)
T ss_dssp TTCTTCCEEECTT-CTTCCHHHHHHHHHHHTTC------------CSCCEEECTTSC-CCHHHHHHHHHHHH-HCSSCCE
T ss_pred hcCCCCCEEEecC-CCCCCHHHHHHHHHHHHhC------------CCcCEEECcCCC-CChHHHHHHHHHHH-hCCCcCE
Confidence 4578999999998 636654111 012332 566667776653 321100 0010 1236777
Q ss_pred EEeecCcCCc-----cccccCCCCCCCCEEee--cCCCCCccC-----CCccc--cCCceeeeecC
Q 038808 108 FVILDWKILE-----VIPNLRHSLSFLTELFI--QECPKLVST-----PGSFP--ETLRKLSIVSC 159 (185)
Q Consensus 108 L~l~~c~~L~-----~lp~~~~~l~~L~~L~l--~~c~~L~~l-----p~~l~--~~L~~L~l~~c 159 (185)
|++++|. +. .+...+...++|++|++ ++| .+..- ...+. .+|++|++.+|
T Consensus 98 L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 98 LNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp EECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred EECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 7777653 32 23445556677888888 555 33321 11011 26888887664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.95 E-value=0.0041 Score=48.90 Aligned_cols=13 Identities=15% Similarity=-0.025 Sum_probs=6.4
Q ss_pred CCCCCCEEeecCC
Q 038808 125 SLSFLTELFIQEC 137 (185)
Q Consensus 125 ~l~~L~~L~l~~c 137 (185)
.+++|+.|+++++
T Consensus 194 ~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 194 KAPNLKILNLSGN 206 (267)
T ss_dssp HSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 4445555555444
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.86 E-value=0.012 Score=41.01 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCc--cccccCCCCCCCCEEeecCCCCCccCCC-c---cccCCceeeeecC
Q 038808 114 KILE--VIPNLRHSLSFLTELFIQECPKLVSTPG-S---FPETLRKLSIVSC 159 (185)
Q Consensus 114 ~~L~--~lp~~~~~l~~L~~L~l~~c~~L~~lp~-~---l~~~L~~L~l~~c 159 (185)
.+++ .+|..+ -++|++|+++++ .++.+|. . ++ +|+.|++.+.
T Consensus 18 ~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~-~L~~L~L~~N 65 (130)
T 3rfe_A 18 RGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALP-ALRTAHLGAN 65 (130)
T ss_dssp SCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCT-TCCEEECCSS
T ss_pred CCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhcc-ccCEEEecCC
Confidence 3456 777543 346888898888 7888887 2 34 7888888763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.65 E-value=0.0061 Score=47.87 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCCCCEEEEccccccccccCC--CCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCC-CCCCCCCCCccEEEeecC
Q 038808 37 TYPLLDHLFLDRSCDSLKMFIT--RPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPE-RGLPLATPNLKLFVILDW 113 (185)
Q Consensus 37 ~l~~L~~L~l~~~C~~l~~lp~--~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c 113 (185)
.+|+|+.|++++ |+++.++. ..+.. +++|+.|++++ +.+..+.. +.+. .+ +|++|++.++
T Consensus 168 ~l~~L~~L~Ls~--N~l~~l~~l~~~~~~------------l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSN--NRLYRLDDMSSIVQK------------APNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTT--SCCCCCGGGTTHHHH------------STTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTS
T ss_pred hCCCCCEEECCC--CCCCCCccchhHHhh------------CCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCC
Confidence 478999999998 88887653 12223 36677777765 34444421 1222 13 8999999887
Q ss_pred cCCccccc-------cCCCCCCCCEEeec
Q 038808 114 KILEVIPN-------LRHSLSFLTELFIQ 135 (185)
Q Consensus 114 ~~L~~lp~-------~~~~l~~L~~L~l~ 135 (185)
+--..+|. .+..+|+|+.|+-.
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cCccccCcchhHHHHHHHHCcccCeECCc
Confidence 64444442 24578899888754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.91 E-value=0.063 Score=37.15 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=14.3
Q ss_pred CCCCEEEEccccccccccCCCCCCCC
Q 038808 39 PLLDHLFLDRSCDSLKMFITRPIPKS 64 (185)
Q Consensus 39 ~~L~~L~l~~~C~~l~~lp~~~~~~l 64 (185)
++|++|++++ |+++.+|.+.|..+
T Consensus 31 ~~l~~L~Ls~--N~l~~l~~~~f~~l 54 (130)
T 3rfe_A 31 VDTTELVLTG--NNLTALPPGLLDAL 54 (130)
T ss_dssp TTCSEEECTT--SCCSSCCTTTGGGC
T ss_pred cCCCEEECCC--CcCCccChhhhhhc
Confidence 3566666666 56666666555544
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.21 E-value=0.088 Score=38.40 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCCCCcEEeeeCCCCCcccCC----CCCCCCCCCccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCcc---
Q 038808 75 DHMSLAILDIKQCPKIVSFPE----RGLPLATPNLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVS--- 142 (185)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~l~~----~~~~~~~~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~--- 142 (185)
..++|++|++++|..+..-.. ..+. ..++|++|++++|. +. .+...+...++|++|++++| .+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 458899999998744542110 1111 13589999998875 43 23344556688999999998 4442
Q ss_pred --CCCccc--cCCceeeee-cCCCCCCCc----hhhccCCCcccccccccC
Q 038808 143 --TPGSFP--ETLRKLSIV-SCHKFRPRR----DWRLHKLENLRSLINIED 184 (185)
Q Consensus 143 --lp~~l~--~~L~~L~l~-~c~~l~~~~----~~~l~~l~sL~~L~~l~~ 184 (185)
+...+. .+|++|++. ..+.+.... ...+...++|++| ++++
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L-~L~~ 160 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF-GYHF 160 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE-ECCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE-eccC
Confidence 111121 289999994 233453211 1246667889998 8764
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.83 E-value=11 Score=24.33 Aligned_cols=28 Identities=0% Similarity=0.057 Sum_probs=15.3
Q ss_pred CCCCCCCCCEEEEccccccccccCCCCCCCC
Q 038808 34 TTNTYPLLDHLFLDRSCDSLKMFITRPIPKS 64 (185)
Q Consensus 34 ~~~~l~~L~~L~l~~~C~~l~~lp~~~~~~l 64 (185)
.|..+.+|+.+.|-. +++.+....|.+.
T Consensus 15 aF~~c~~L~~i~iP~---~v~~Ig~~aF~~C 42 (100)
T 2lz0_A 15 LFAGNTVIREITVQP---NIGLLYDGMFSGC 42 (100)
T ss_dssp TTTTCTTCCCEEECT---TSSCCCTTSSTTC
T ss_pred HhcCCCCCcEEEcCC---chheEcHHHHhcc
Confidence 344555666666644 4555555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=51.11 E-value=2.5 Score=31.32 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=59.3
Q ss_pred CCCCcEEeeeCCCCCcccC----CCCCCCCCCCccEEEeecCcCCc-----cccccCCCCCCCCEEeecCCCCCccC---
Q 038808 76 HMSLAILDIKQCPKIVSFP----ERGLPLATPNLKLFVILDWKILE-----VIPNLRHSLSFLTELFIQECPKLVST--- 143 (185)
Q Consensus 76 l~~L~~L~l~~c~~l~~l~----~~~~~~~~~~L~~L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~L~~l--- 143 (185)
-+.|++|+++++..+..-. ...+.. -.+|+.|++++|. +. .+-+.+..=+.|++|+++++ .+..-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 4789999998754443210 011111 2489999998864 33 23333444578999999988 44311
Q ss_pred --CCc--cccCCceeeeecCCC--CCC-----CchhhccCCCccccccccc
Q 038808 144 --PGS--FPETLRKLSIVSCHK--FRP-----RRDWRLHKLENLRSLINIE 183 (185)
Q Consensus 144 --p~~--l~~~L~~L~l~~c~~--l~~-----~~~~~l~~l~sL~~L~~l~ 183 (185)
... ....|+.|++.++.. +.. +. ..+..-++|++| +++
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L-~l~ 165 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRV-GIS 165 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEE-ECC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeE-ecc
Confidence 000 123799999986532 221 11 245666778777 654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.64 E-value=13 Score=24.08 Aligned_cols=45 Identities=4% Similarity=0.054 Sum_probs=22.4
Q ss_pred cccccCCCCCCCCCCccEEEcCCCCCCCcEEeeeCCCCCcccCCCCCCCCCCCccEEEee
Q 038808 52 SLKMFITRPIPKSPNLDSVSITKDHMSLAILDIKQCPKIVSFPERGLPLATPNLKLFVIL 111 (185)
Q Consensus 52 ~l~~lp~~~~~~l~~L~~L~l~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 111 (185)
.++.+....|.+. .+|+++.|-. .++.+....|. .|.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c------------~~L~~i~iP~--~v~~Ig~~aF~-~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGN------------TVIREITVQP--NIGLLYDGMFS-GCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTC------------TTCCCEEECT--TSSCCCTTSST-TCTTCCCEEEC
T ss_pred ccCEecHHHhcCC------------CCCcEEEcCC--chheEcHHHHh-ccCCccEEEEc
Confidence 4555555556554 4455554442 34455444443 34455555553
Done!