Query 038810
Match_columns 164
No_of_seqs 222 out of 1507
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 03:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09491 rimI ribosomal-protei 99.9 5.4E-25 1.2E-29 137.2 16.8 144 9-157 2-146 (146)
2 TIGR03827 GNAT_ablB putative b 99.9 3.1E-24 6.6E-29 145.7 15.8 148 7-157 114-266 (266)
3 PRK10140 putative acetyltransf 99.9 6E-23 1.3E-27 130.0 17.6 146 9-155 4-160 (162)
4 PRK10146 aminoalkylphosphonic 99.9 1.3E-23 2.8E-28 130.6 13.0 130 8-137 3-138 (144)
5 KOG3139 N-acetyltransferase [G 99.9 1.2E-22 2.6E-27 122.9 15.4 146 9-157 14-164 (165)
6 COG1247 Sortase and related ac 99.9 1.6E-22 3.4E-27 125.8 16.3 152 9-160 2-167 (169)
7 TIGR01575 rimI ribosomal-prote 99.9 1.2E-22 2.6E-27 124.2 14.8 130 18-153 1-131 (131)
8 PRK03624 putative acetyltransf 99.9 7E-22 1.5E-26 122.1 14.2 126 8-138 2-131 (140)
9 PRK10151 ribosomal-protein-L7/ 99.9 9.9E-21 2.1E-25 121.8 16.5 150 7-159 9-178 (179)
10 PTZ00330 acetyltransferase; Pr 99.9 8.7E-21 1.9E-25 118.3 15.5 128 8-138 6-142 (147)
11 TIGR02406 ectoine_EctA L-2,4-d 99.9 8.1E-21 1.8E-25 119.5 13.8 127 11-139 1-130 (157)
12 PF13420 Acetyltransf_4: Acety 99.9 8.6E-21 1.9E-25 119.3 13.7 138 11-151 1-154 (155)
13 TIGR02382 wecD_rffC TDP-D-fuco 99.9 6.6E-21 1.4E-25 123.7 12.7 128 8-139 43-187 (191)
14 COG0456 RimI Acetyltransferase 99.9 1.5E-20 3.2E-25 120.7 14.2 148 7-155 10-171 (177)
15 PF13527 Acetyltransf_9: Acety 99.9 3E-20 6.5E-25 113.1 14.2 120 10-135 1-127 (127)
16 KOG3216 Diamine acetyltransfer 99.9 8.2E-20 1.8E-24 109.5 14.5 139 7-145 2-154 (163)
17 PRK10809 ribosomal-protein-S5- 99.9 1.9E-19 4E-24 117.2 17.4 149 8-158 17-188 (194)
18 PRK10975 TDP-fucosamine acetyl 99.9 7.2E-20 1.6E-24 119.2 14.5 127 9-139 47-190 (194)
19 PRK15130 spermidine N1-acetylt 99.8 2.4E-19 5.3E-24 116.0 16.4 147 8-157 6-166 (186)
20 PF00583 Acetyltransf_1: Acety 99.8 7.2E-20 1.6E-24 103.3 12.1 82 52-133 1-83 (83)
21 PLN02706 glucosamine 6-phospha 99.8 2E-19 4.3E-24 112.6 15.2 128 7-137 5-144 (150)
22 PF13523 Acetyltransf_8: Acety 99.8 2E-19 4.4E-24 112.8 14.2 129 11-139 1-143 (152)
23 KOG3234 Acetyltransferase, (GN 99.8 1.4E-20 3E-25 113.2 7.9 154 9-163 2-157 (173)
24 PRK07922 N-acetylglutamate syn 99.8 2.3E-19 5E-24 114.1 14.0 123 7-138 4-128 (169)
25 TIGR03103 trio_acet_GNAT GNAT- 99.8 4E-19 8.6E-24 130.9 16.4 134 7-140 81-220 (547)
26 KOG3235 Subunit of the major N 99.8 1.7E-20 3.7E-25 112.9 6.7 148 9-158 2-154 (193)
27 TIGR03585 PseH pseudaminic aci 99.8 6.3E-19 1.4E-23 110.9 14.0 140 10-153 2-155 (156)
28 PRK07757 acetyltransferase; Pr 99.8 7.4E-19 1.6E-23 110.2 13.9 121 9-138 2-123 (152)
29 TIGR01686 FkbH FkbH-like domai 99.8 7.4E-19 1.6E-23 122.3 15.0 124 6-135 184-319 (320)
30 PHA00673 acetyltransferase dom 99.8 1E-18 2.2E-23 107.4 13.8 123 14-137 12-146 (154)
31 PRK10514 putative acetyltransf 99.8 1.4E-18 3E-23 108.1 14.7 132 9-155 2-143 (145)
32 KOG3138 Predicted N-acetyltran 99.8 1.3E-19 2.8E-24 114.2 8.2 150 9-158 17-173 (187)
33 COG3153 Predicted acetyltransf 99.8 6.8E-18 1.5E-22 105.4 14.7 145 7-159 2-152 (171)
34 PRK09831 putative acyltransfer 99.8 1E-18 2.2E-23 109.0 11.0 129 10-157 2-145 (147)
35 TIGR03448 mycothiol_MshD mycot 99.8 8.8E-18 1.9E-22 115.9 16.5 130 8-139 149-290 (292)
36 PRK10314 putative acyltransfer 99.8 8.7E-19 1.9E-23 109.6 9.9 138 11-157 9-150 (153)
37 PF13673 Acetyltransf_10: Acet 99.8 5.3E-18 1.2E-22 101.7 12.7 103 18-132 1-117 (117)
38 PRK10562 putative acetyltransf 99.8 1.9E-17 4.2E-22 103.0 15.3 131 11-157 2-142 (145)
39 TIGR01890 N-Ac-Glu-synth amino 99.8 5.3E-18 1.1E-22 122.2 13.6 123 9-138 283-406 (429)
40 PLN02825 amino-acid N-acetyltr 99.8 4.9E-18 1.1E-22 123.1 12.7 120 9-138 368-491 (515)
41 PRK05279 N-acetylglutamate syn 99.8 6.9E-18 1.5E-22 122.1 12.6 119 9-137 295-417 (441)
42 PHA01807 hypothetical protein 99.8 2E-17 4.2E-22 102.8 12.8 118 13-130 8-136 (153)
43 PRK01346 hypothetical protein; 99.8 2.5E-17 5.4E-22 118.5 14.5 131 6-141 4-140 (411)
44 COG1246 ArgA N-acetylglutamate 99.8 2.3E-17 4.9E-22 100.2 11.7 118 10-137 2-123 (153)
45 PF13508 Acetyltransf_7: Acety 99.8 3.4E-17 7.3E-22 91.5 11.5 77 47-134 3-79 (79)
46 TIGR03448 mycothiol_MshD mycot 99.8 3.4E-17 7.4E-22 112.9 12.7 122 12-141 4-132 (292)
47 PF13302 Acetyltransf_3: Acety 99.7 3.6E-16 7.8E-21 96.8 15.5 122 9-133 2-142 (142)
48 PRK12308 bifunctional arginino 99.7 3.4E-17 7.4E-22 122.5 12.7 120 8-139 463-586 (614)
49 KOG3396 Glucosamine-phosphate 99.7 3.8E-16 8.3E-21 91.9 11.3 127 8-137 6-144 (150)
50 KOG2488 Acetyltransferase (GNA 99.7 1.7E-15 3.8E-20 94.3 11.8 123 17-140 54-185 (202)
51 PRK13688 hypothetical protein; 99.7 3.1E-15 6.6E-20 93.5 10.5 109 11-138 20-134 (156)
52 PF08445 FR47: FR47-like prote 99.6 1.1E-14 2.3E-19 82.3 10.6 60 77-137 23-82 (86)
53 COG1670 RimL Acetyltransferase 99.6 7.6E-14 1.6E-18 90.0 14.6 151 8-159 9-181 (187)
54 COG3393 Predicted acetyltransf 99.6 2E-14 4.3E-19 94.4 10.3 91 46-141 176-266 (268)
55 cd02169 Citrate_lyase_ligase C 99.6 3.1E-14 6.7E-19 97.4 10.6 78 49-138 8-85 (297)
56 COG3981 Predicted acetyltransf 99.5 2.6E-13 5.6E-18 83.6 10.6 131 9-140 4-162 (174)
57 TIGR00124 cit_ly_ligase [citra 99.5 4.1E-13 9E-18 93.3 12.4 81 47-139 31-111 (332)
58 COG2153 ElaA Predicted acyltra 99.5 2.2E-13 4.7E-18 81.5 7.4 136 12-157 11-152 (155)
59 PF12746 GNAT_acetyltran: GNAT 99.5 2.2E-12 4.8E-17 86.6 11.4 93 46-146 164-256 (265)
60 PF13718 GNAT_acetyltr_2: GNAT 99.4 2.3E-11 5.1E-16 77.9 13.6 121 35-157 14-195 (196)
61 KOG3397 Acetyltransferases [Ge 99.4 4.8E-12 1E-16 78.0 8.9 88 48-141 56-145 (225)
62 PF12568 DUF3749: Acetyltransf 99.3 7.6E-11 1.7E-15 69.7 11.2 116 9-136 2-124 (128)
63 KOG4144 Arylalkylamine N-acety 99.3 1.9E-12 4.2E-17 78.2 3.0 130 7-139 10-163 (190)
64 TIGR01211 ELP3 histone acetylt 99.3 6.3E-11 1.4E-15 86.9 11.2 91 46-139 410-518 (522)
65 PF08444 Gly_acyl_tr_C: Aralky 99.3 2.4E-11 5.2E-16 67.5 6.3 75 54-137 6-80 (89)
66 cd04301 NAT_SF N-Acyltransfera 99.2 1.5E-10 3.3E-15 61.2 8.1 63 50-114 2-64 (65)
67 COG3818 Predicted acetyltransf 99.2 2.6E-10 5.6E-15 67.2 8.1 132 6-140 5-151 (167)
68 PF14542 Acetyltransf_CG: GCN5 99.2 1.4E-09 3.1E-14 60.0 10.1 71 50-130 2-72 (78)
69 COG1444 Predicted P-loop ATPas 99.1 2.3E-09 4.9E-14 81.0 13.4 123 35-160 457-613 (758)
70 KOG4135 Predicted phosphogluco 99.0 4.5E-08 9.8E-13 59.2 12.4 130 9-138 14-171 (185)
71 COG3375 Uncharacterized conser 99.0 4.6E-08 1E-12 63.1 12.3 137 7-144 1-144 (266)
72 COG3053 CitC Citrate lyase syn 98.9 1.6E-07 3.6E-12 63.1 12.1 114 9-141 4-119 (352)
73 COG4552 Eis Predicted acetyltr 98.8 2.3E-08 4.9E-13 68.8 7.9 90 46-140 38-130 (389)
74 COG2388 Predicted acetyltransf 98.8 4.9E-08 1.1E-12 55.8 7.1 66 46-115 14-79 (99)
75 COG5628 Predicted acetyltransf 98.7 3E-07 6.4E-12 53.6 8.2 84 47-134 37-120 (143)
76 COG3882 FkbH Predicted enzyme 98.6 5E-07 1.1E-11 64.9 9.9 127 6-137 411-550 (574)
77 PF00765 Autoind_synth: Autoin 98.5 2.2E-06 4.7E-11 55.1 10.0 123 14-139 5-157 (182)
78 PF01233 NMT: Myristoyl-CoA:pr 98.5 1.4E-05 3.1E-10 49.5 11.8 107 9-115 24-150 (162)
79 PF13480 Acetyltransf_6: Acety 98.4 1.3E-05 2.9E-10 49.2 11.2 103 9-116 20-135 (142)
80 COG0454 WecD Histone acetyltra 98.3 1.7E-06 3.6E-11 51.3 4.8 44 81-132 87-130 (156)
81 PF04958 AstA: Arginine N-succ 98.2 4.4E-05 9.6E-10 53.4 11.1 123 9-131 2-182 (342)
82 TIGR03694 exosort_acyl putativ 98.2 6E-05 1.3E-09 50.8 11.3 129 9-141 8-204 (241)
83 PF06852 DUF1248: Protein of u 98.2 0.00015 3.3E-09 46.3 12.4 121 12-137 8-137 (181)
84 PRK13834 putative autoinducer 98.2 0.0001 2.3E-09 48.5 11.6 119 14-135 13-163 (207)
85 TIGR03019 pepcterm_femAB FemAB 98.1 0.00013 2.8E-09 51.6 12.4 128 9-143 152-287 (330)
86 PRK10456 arginine succinyltran 98.1 0.00011 2.4E-09 51.4 11.5 93 9-101 2-145 (344)
87 TIGR03244 arg_catab_AstA argin 97.9 0.00058 1.2E-08 47.8 10.9 91 11-101 2-143 (336)
88 PHA00432 internal virion prote 97.8 0.00039 8.4E-09 42.2 8.5 112 10-137 2-121 (137)
89 TIGR03245 arg_AOST_alph argini 97.8 0.00075 1.6E-08 47.2 11.0 91 11-101 2-144 (336)
90 COG3916 LasI N-acyl-L-homoseri 97.8 0.0012 2.5E-08 42.9 10.8 124 12-138 10-164 (209)
91 TIGR03243 arg_catab_AOST argin 97.8 0.001 2.2E-08 46.5 11.0 92 11-102 2-144 (335)
92 PF13880 Acetyltransf_13: ESCO 97.8 4.9E-05 1.1E-09 40.6 3.6 30 75-104 5-34 (70)
93 TIGR03827 GNAT_ablB putative b 97.8 0.00017 3.6E-09 49.5 7.1 64 91-160 21-84 (266)
94 PF05301 Mec-17: Touch recepto 97.6 0.0017 3.7E-08 38.4 8.7 80 48-130 5-98 (120)
95 cd04264 DUF619-NAGS DUF619 dom 97.6 0.00087 1.9E-08 38.7 7.4 66 49-121 10-75 (99)
96 PHA01733 hypothetical protein 97.5 0.00037 8.1E-09 42.9 5.7 123 9-139 3-134 (153)
97 PRK01305 arginyl-tRNA-protein 97.5 0.011 2.4E-07 39.8 13.2 96 35-137 129-227 (240)
98 KOG2779 N-myristoyl transferas 97.5 0.00088 1.9E-08 46.8 7.9 78 32-109 115-201 (421)
99 PF04768 DUF619: Protein of un 97.5 0.0071 1.5E-07 38.6 11.2 122 12-141 26-150 (170)
100 PRK14852 hypothetical protein; 97.4 0.0021 4.5E-08 51.3 9.7 144 9-157 29-199 (989)
101 PF04377 ATE_C: Arginine-tRNA- 97.4 0.0092 2E-07 36.2 11.2 78 36-118 25-105 (128)
102 cd04265 DUF619-NAGS-U DUF619 d 97.3 0.0027 5.9E-08 36.6 7.1 64 50-121 12-75 (99)
103 COG1243 ELP3 Histone acetyltra 97.3 0.00064 1.4E-08 49.2 5.0 86 48-138 405-510 (515)
104 KOG3698 Hyaluronoglucosaminida 97.2 0.0033 7.3E-08 46.9 8.1 133 7-139 678-880 (891)
105 KOG2036 Predicted P-loop ATPas 97.2 0.0021 4.6E-08 49.1 6.9 83 75-159 614-746 (1011)
106 PF02474 NodA: Nodulation prot 97.1 0.0028 6E-08 39.9 6.0 142 13-158 14-177 (196)
107 PF01853 MOZ_SAS: MOZ/SAS fami 96.9 0.014 3E-07 37.6 8.1 48 57-108 66-113 (188)
108 COG3138 AstA Arginine/ornithin 96.9 0.0097 2.1E-07 40.6 7.4 88 9-96 2-140 (336)
109 KOG2535 RNA polymerase II elon 96.8 0.0026 5.7E-08 44.6 4.7 51 85-138 497-548 (554)
110 PF09924 DUF2156: Uncharacteri 96.8 0.033 7.2E-07 39.0 10.2 106 9-118 133-248 (299)
111 PF02799 NMT_C: Myristoyl-CoA: 96.8 0.063 1.4E-06 34.8 12.0 125 11-143 31-171 (190)
112 PF11124 Pho86: Inorganic phos 96.4 0.11 2.4E-06 36.0 10.3 91 46-136 168-270 (304)
113 PRK00756 acyltransferase NodA; 96.4 0.046 1E-06 34.4 7.5 141 13-157 14-176 (196)
114 PLN03238 probable histone acet 96.3 0.018 3.8E-07 39.5 5.9 48 57-108 141-188 (290)
115 PF13444 Acetyltransf_5: Acety 96.2 0.025 5.4E-07 32.8 5.4 53 45-97 28-100 (101)
116 COG5092 NMT1 N-myristoyl trans 96.1 0.053 1.1E-06 37.8 7.3 97 14-110 87-200 (451)
117 COG2401 ABC-type ATPase fused 96.0 0.0057 1.2E-07 44.4 2.7 63 75-137 241-308 (593)
118 PF04339 DUF482: Protein of un 96.0 0.14 3E-06 37.0 9.4 116 13-141 209-333 (370)
119 KOG4601 Uncharacterized conser 95.8 0.23 5E-06 33.1 9.0 89 38-129 57-159 (264)
120 PF09390 DUF1999: Protein of u 95.7 0.24 5.3E-06 30.4 13.4 123 9-137 1-141 (161)
121 PF11039 DUF2824: Protein of u 95.7 0.24 5.2E-06 30.0 10.1 93 46-145 37-130 (151)
122 PLN03239 histone acetyltransfe 95.6 0.046 1E-06 38.7 5.6 48 57-108 199-246 (351)
123 PTZ00064 histone acetyltransfe 95.6 0.035 7.7E-07 41.0 5.1 48 57-108 370-417 (552)
124 KOG2779 N-myristoyl transferas 95.4 0.18 3.9E-06 35.8 7.9 126 10-143 262-403 (421)
125 KOG2696 Histone acetyltransfer 95.1 0.071 1.5E-06 37.9 5.2 60 58-118 200-259 (403)
126 COG5630 ARG2 Acetylglutamate s 95.1 0.24 5.1E-06 35.6 7.7 111 17-135 345-458 (495)
127 PRK04531 acetylglutamate kinas 95.0 0.23 5E-06 36.4 7.7 113 14-141 259-372 (398)
128 PLN00104 MYST -like histone ac 95.0 0.038 8.2E-07 40.5 3.7 48 57-108 292-339 (450)
129 COG2935 Putative arginyl-tRNA: 94.5 0.32 7E-06 32.8 6.8 60 55-119 159-218 (253)
130 cd04266 DUF619-NAGS-FABP DUF61 94.4 0.58 1.3E-05 27.5 8.3 67 50-121 12-82 (108)
131 KOG3014 Protein involved in es 93.8 0.63 1.4E-05 31.5 7.1 31 75-105 183-213 (257)
132 KOG2747 Histone acetyltransfer 93.8 0.15 3.3E-06 36.8 4.5 31 77-107 262-292 (396)
133 PRK02983 lysS lysyl-tRNA synth 92.9 2.2 4.8E-05 35.7 10.2 59 55-118 429-487 (1094)
134 PF12261 T_hemolysin: Thermost 92.4 1.7 3.7E-05 28.2 7.4 78 54-138 42-143 (179)
135 PF11090 DUF2833: Protein of u 92.0 0.93 2E-05 25.4 5.1 29 109-137 56-84 (86)
136 PF04339 DUF482: Protein of un 92.0 2.9 6.4E-05 30.5 9.0 97 48-146 45-169 (370)
137 PF02388 FemAB: FemAB family; 91.5 3 6.5E-05 30.8 8.9 106 49-159 37-160 (406)
138 PF07395 Mig-14: Mig-14; Inte 91.3 2.2 4.7E-05 29.4 7.3 101 11-112 129-241 (264)
139 COG5653 Protein involved in ce 90.7 5.2 0.00011 29.4 11.0 86 28-118 248-338 (406)
140 cd03173 DUF619-like DUF619 dom 90.3 2.3 4.9E-05 24.6 7.8 62 51-121 13-74 (98)
141 KOG4387 Ornithine decarboxylas 90.2 3.5 7.5E-05 26.5 7.5 78 81-160 105-186 (191)
142 COG2898 Uncharacterized conser 89.3 3.3 7.2E-05 31.7 7.5 61 54-118 400-460 (538)
143 PRK15312 antimicrobial resista 88.6 5.4 0.00012 28.0 7.5 99 11-110 157-269 (298)
144 PHA02769 hypothetical protein; 88.2 0.68 1.5E-05 27.3 2.7 45 93-139 94-141 (154)
145 COG5027 SAS2 Histone acetyltra 87.6 0.41 8.9E-06 34.0 1.8 44 58-105 249-292 (395)
146 COG5092 NMT1 N-myristoyl trans 86.4 8.8 0.00019 27.3 7.6 129 10-143 260-420 (451)
147 PF02388 FemAB: FemAB family; 80.7 21 0.00045 26.5 9.3 56 57-117 303-358 (406)
148 PF04816 DUF633: Family of unk 77.0 6 0.00013 26.3 4.1 49 91-139 74-124 (205)
149 cd08353 Glo_EDI_BRP_like_7 Thi 74.3 3.8 8.2E-05 24.9 2.6 28 109-137 4-31 (142)
150 cd07235 MRD Mitomycin C resist 73.4 5 0.00011 23.5 2.9 16 121-136 12-27 (122)
151 PF12953 DUF3842: Domain of un 71.3 10 0.00022 23.1 3.7 48 86-137 6-53 (131)
152 cd09012 Glo_EDI_BRP_like_24 Th 67.8 12 0.00026 22.0 3.7 16 121-136 12-27 (124)
153 COG3543 Uncharacterized conser 64.9 14 0.0003 22.5 3.4 38 83-120 12-50 (135)
154 cd04263 DUF619-NAGK-FABP DUF61 64.9 25 0.00055 20.4 7.7 42 75-121 33-74 (98)
155 COG2384 Predicted SAM-dependen 64.6 20 0.00043 24.2 4.4 49 91-139 93-143 (226)
156 COG2266 GTP:adenosylcobinamide 64.5 25 0.00055 22.8 4.7 47 93-140 26-72 (177)
157 PF13380 CoA_binding_2: CoA bi 63.1 26 0.00057 20.8 4.5 44 93-136 64-107 (116)
158 KOG1472 Histone acetyltransfer 62.9 2 4.4E-05 33.9 -0.4 98 37-140 408-508 (720)
159 PF02836 Glyco_hydro_2_C: Glyc 62.9 50 0.0011 23.2 6.5 66 75-140 14-81 (298)
160 cd08356 Glo_EDI_BRP_like_17 Th 62.6 7.3 0.00016 22.7 2.0 19 121-139 13-31 (113)
161 COG2348 Peptidoglycan interpep 62.1 65 0.0014 24.2 8.8 96 48-146 41-153 (418)
162 cd08350 BLMT_like BLMT, a bleo 61.3 13 0.00028 21.8 3.0 19 121-139 14-32 (120)
163 cd08358 Glo_EDI_BRP_like_21 Th 59.5 26 0.00057 21.3 4.1 18 121-138 14-32 (127)
164 TIGR02990 ectoine_eutA ectoine 55.3 21 0.00046 24.4 3.5 45 94-138 105-152 (239)
165 PRK10150 beta-D-glucuronidase; 55.2 1E+02 0.0022 24.3 7.7 65 75-139 291-357 (604)
166 COG3146 Uncharacterized protei 54.9 81 0.0018 23.0 7.3 117 13-141 224-348 (387)
167 PF06559 DCD: 2'-deoxycytidine 54.6 9.3 0.0002 27.5 1.7 37 52-92 320-356 (364)
168 COG5270 PUA domain (predicted 53.7 25 0.00053 23.0 3.3 23 47-69 163-185 (202)
169 COG3473 Maleate cis-trans isom 53.7 32 0.00069 23.2 3.9 37 102-138 111-150 (238)
170 PF08901 DUF1847: Protein of u 52.4 24 0.00052 22.4 3.0 42 97-138 43-88 (157)
171 PF02100 ODC_AZ: Ornithine dec 51.8 49 0.0011 19.5 6.0 71 83-156 30-107 (108)
172 cd08346 PcpA_N_like N-terminal 50.2 26 0.00057 20.3 3.1 28 110-138 3-31 (126)
173 cd08344 MhqB_like_N N-terminal 49.9 18 0.00039 20.8 2.3 27 110-137 4-30 (112)
174 cd07267 THT_Oxygenase_N N-term 49.2 17 0.00037 21.0 2.1 26 111-137 6-31 (113)
175 PF04015 DUF362: Domain of unk 48.2 64 0.0014 21.2 4.9 48 90-137 18-67 (206)
176 cd08342 HPPD_N_like N-terminal 47.9 25 0.00055 21.2 2.8 27 111-138 3-30 (136)
177 PF14696 Glyoxalase_5: Hydroxy 47.5 11 0.00024 23.4 1.1 31 108-139 9-39 (139)
178 PF03376 Adeno_E3B: Adenovirus 46.0 9.3 0.0002 20.1 0.5 13 84-96 53-65 (67)
179 TIGR03645 glyox_marine lactoyl 45.9 25 0.00054 22.1 2.6 27 108-135 4-31 (162)
180 PF00903 Glyoxalase: Glyoxalas 44.6 24 0.00052 20.4 2.3 29 110-139 3-32 (128)
181 cd07253 Glo_EDI_BRP_like_2 Thi 44.2 33 0.0007 19.8 2.8 30 109-139 4-34 (125)
182 COG3607 Predicted lactoylgluta 44.1 18 0.00038 22.1 1.5 19 121-139 15-33 (133)
183 PRK14968 putative methyltransf 44.1 76 0.0016 20.2 4.7 46 95-140 129-174 (188)
184 PTZ00129 40S ribosomal protein 44.0 82 0.0018 19.9 6.2 49 91-139 71-131 (149)
185 PF10566 Glyco_hydro_97: Glyco 43.4 89 0.0019 22.0 5.0 39 94-133 72-121 (273)
186 cd08352 Glo_EDI_BRP_like_1 Thi 42.6 37 0.0008 19.5 2.9 29 108-137 3-32 (125)
187 PF11633 SUD-M: Single-strande 42.4 83 0.0018 19.5 4.8 44 94-140 22-65 (142)
188 PF04555 XhoI: Restriction end 42.3 1E+02 0.0022 20.4 5.1 39 80-118 144-182 (196)
189 PRK14837 undecaprenyl pyrophos 41.2 46 0.001 22.7 3.3 34 85-118 27-60 (230)
190 TIGR00055 uppS undecaprenyl di 40.9 47 0.001 22.6 3.3 34 85-118 20-53 (226)
191 TIGR00377 ant_ant_sig anti-ant 40.4 71 0.0015 18.2 4.2 40 93-135 60-99 (108)
192 PRK14831 undecaprenyl pyrophos 39.3 43 0.00094 23.1 3.0 34 85-118 41-74 (249)
193 PF01740 STAS: STAS domain; I 38.8 58 0.0013 18.9 3.3 40 93-135 65-104 (117)
194 COG1212 KdsB CMP-2-keto-3-deox 38.1 1.2E+02 0.0026 20.9 4.8 48 93-142 27-74 (247)
195 cd07255 Glo_EDI_BRP_like_12 Th 37.5 43 0.00093 19.5 2.6 29 110-139 4-33 (125)
196 cd07265 2_3_CTD_N N-terminal d 37.4 41 0.00089 19.6 2.5 28 110-138 6-34 (122)
197 PF12681 Glyoxalase_2: Glyoxal 37.3 38 0.00083 19.0 2.3 19 121-139 7-26 (108)
198 PF02334 RTP: Replication term 37.1 12 0.00025 22.2 0.1 24 87-110 28-51 (122)
199 PF12162 STAT1_TAZ2bind: STAT1 37.1 19 0.00042 14.6 0.7 15 11-25 7-21 (23)
200 TIGR00068 glyox_I lactoylgluta 36.4 39 0.00084 20.8 2.4 29 108-137 17-46 (150)
201 COG0346 GloA Lactoylglutathion 36.3 50 0.0011 18.8 2.8 29 110-139 4-33 (138)
202 cd07241 Glo_EDI_BRP_like_3 Thi 36.0 55 0.0012 18.9 2.9 26 111-137 4-30 (125)
203 TIGR01417 PTS_I_fam phosphoeno 35.7 1E+02 0.0022 24.3 4.8 46 94-139 481-526 (565)
204 COG1658 Small primase-like pro 35.4 28 0.00062 21.2 1.5 22 81-102 60-81 (127)
205 PF01255 Prenyltransf: Putativ 35.3 50 0.0011 22.3 2.8 34 85-118 15-48 (223)
206 PRK14841 undecaprenyl pyrophos 35.0 64 0.0014 22.1 3.3 34 85-118 24-57 (233)
207 PRK14832 undecaprenyl pyrophos 34.9 59 0.0013 22.6 3.1 34 85-118 39-72 (253)
208 PRK14842 undecaprenyl pyrophos 34.8 67 0.0015 22.1 3.4 34 85-118 29-62 (241)
209 COG2231 Uncharacterized protei 34.7 37 0.0008 22.7 2.0 40 90-136 121-160 (215)
210 cd07252 BphC1-RGP6_N_like N-te 34.6 53 0.0012 19.1 2.7 27 110-137 4-31 (120)
211 cd00475 CIS_IPPS Cis (Z)-Isopr 34.6 66 0.0014 21.8 3.3 34 85-118 21-54 (221)
212 COG4866 Uncharacterized conser 34.5 1.6E+02 0.0035 20.6 5.8 77 9-89 152-241 (294)
213 cd07238 Glo_EDI_BRP_like_5 Thi 34.4 41 0.00089 19.2 2.1 16 121-136 12-28 (112)
214 PRK10240 undecaprenyl pyrophos 34.0 60 0.0013 22.1 3.0 34 85-118 14-47 (229)
215 PF02896 PEP-utilizers_C: PEP- 34.0 72 0.0016 22.7 3.5 47 94-140 234-280 (293)
216 COG3620 Predicted transcriptio 34.0 1.3E+02 0.0029 19.4 5.3 39 24-63 134-175 (187)
217 KOG1412 Aspartate aminotransfe 33.8 32 0.0007 24.8 1.8 52 89-144 108-159 (410)
218 COG0807 RibA GTP cyclohydrolas 33.5 1E+02 0.0022 20.5 3.9 51 81-140 120-170 (193)
219 cd08362 BphC5-RrK37_N_like N-t 32.8 47 0.001 19.1 2.3 29 109-138 4-33 (120)
220 PTZ00349 dehydrodolichyl dipho 32.5 68 0.0015 23.2 3.2 34 85-118 40-73 (322)
221 cd07240 ED_TypeI_classII_N N-t 32.5 57 0.0012 18.6 2.5 18 121-138 14-32 (117)
222 cd08347 PcpA_C_like C-terminal 32.4 58 0.0013 20.4 2.7 29 109-138 2-31 (157)
223 PRK14834 undecaprenyl pyrophos 32.3 85 0.0018 21.8 3.5 34 85-118 35-68 (249)
224 PF12804 NTP_transf_3: MobA-li 32.3 72 0.0016 19.7 3.1 43 93-137 23-65 (160)
225 PRK11478 putative lyase; Provi 32.2 53 0.0011 19.2 2.4 27 109-136 7-34 (129)
226 PRK14840 undecaprenyl pyrophos 31.9 73 0.0016 22.1 3.2 34 85-118 43-76 (250)
227 cd07266 HPCD_N_class_II N-term 31.8 52 0.0011 19.0 2.3 29 109-138 5-34 (121)
228 cd07249 MMCE Methylmalonyl-CoA 31.8 45 0.00099 19.3 2.1 27 111-138 3-30 (128)
229 cd02540 GT2_GlmU_N_bac N-termi 31.6 1.1E+02 0.0025 20.1 4.2 41 93-133 25-65 (229)
230 COG2348 Peptidoglycan interpep 31.6 2.3E+02 0.005 21.5 6.1 74 56-133 301-379 (418)
231 PF01751 Toprim: Toprim domain 31.6 46 0.00099 19.0 2.0 23 81-103 65-87 (100)
232 PRK14829 undecaprenyl pyrophos 31.4 71 0.0015 22.0 3.1 34 85-118 35-68 (243)
233 PRK14839 undecaprenyl pyrophos 31.3 77 0.0017 21.8 3.2 34 85-118 30-63 (239)
234 PF02219 MTHFR: Methylenetetra 31.3 1.9E+02 0.0041 20.4 5.7 41 91-131 247-287 (287)
235 cd07043 STAS_anti-anti-sigma_f 31.1 98 0.0021 17.0 4.6 41 92-135 54-94 (99)
236 cd07242 Glo_EDI_BRP_like_6 Thi 31.0 72 0.0016 18.6 2.9 29 109-138 2-34 (128)
237 cd07264 Glo_EDI_BRP_like_15 Th 31.0 69 0.0015 18.5 2.8 16 121-136 12-28 (125)
238 PRK14833 undecaprenyl pyrophos 30.9 78 0.0017 21.7 3.2 34 85-118 25-58 (233)
239 cd08348 BphC2-C3-RGP6_C_like T 29.8 82 0.0018 18.6 3.0 19 121-139 13-32 (134)
240 cd07243 2_3_CTD_C C-terminal d 29.8 72 0.0016 19.5 2.7 28 109-137 7-35 (143)
241 PF12652 CotJB: CotJB protein; 29.3 27 0.00059 19.3 0.7 20 111-130 19-38 (78)
242 PRK14835 undecaprenyl pyrophos 29.3 81 0.0018 22.2 3.1 34 85-118 62-95 (275)
243 cd08349 BLMA_like Bleomycin bi 29.2 52 0.0011 18.5 2.0 18 121-138 10-28 (112)
244 PRK03681 hypA hydrogenase nick 29.2 1.3E+02 0.0029 17.9 3.7 37 91-127 5-47 (114)
245 cd06844 STAS Sulphate Transpor 29.0 1.2E+02 0.0025 17.2 4.3 39 93-134 56-94 (100)
246 cd07042 STAS_SulP_like_sulfate 29.0 1.1E+02 0.0024 17.1 4.5 43 93-138 58-100 (107)
247 cd01027 TOPRIM_RNase_M5_like T 28.9 34 0.00074 18.9 1.1 23 80-102 49-71 (81)
248 PRK14838 undecaprenyl pyrophos 28.6 88 0.0019 21.6 3.1 34 85-118 31-64 (242)
249 PRK10310 PTS system galactitol 28.4 95 0.0021 17.6 2.9 22 89-110 10-33 (94)
250 PF13289 SIR2_2: SIR2-like dom 28.4 1.4E+02 0.003 17.9 4.8 13 121-133 129-141 (143)
251 cd04182 GT_2_like_f GT_2_like_ 28.2 89 0.0019 19.7 3.1 40 93-132 25-64 (186)
252 cd07237 BphC1-RGP6_C_like C-te 28.2 1.5E+02 0.0033 18.3 4.6 29 108-137 9-38 (154)
253 PRK10291 glyoxalase I; Provisi 28.0 66 0.0014 19.0 2.3 17 121-137 8-25 (129)
254 cd04197 eIF-2B_epsilon_N The N 28.0 1E+02 0.0023 20.3 3.4 33 93-125 30-62 (217)
255 cd07233 Glyoxalase_I Glyoxalas 27.8 1.2E+02 0.0026 17.3 3.5 25 112-137 4-29 (121)
256 cd07246 Glo_EDI_BRP_like_8 Thi 27.6 1.3E+02 0.0027 17.2 3.7 20 119-138 11-31 (122)
257 COG0623 FabI Enoyl-[acyl-carri 27.5 1.3E+02 0.0028 20.8 3.7 45 76-120 144-189 (259)
258 cd07256 HPCD_C_class_II C-term 27.4 67 0.0015 20.1 2.4 27 109-136 4-31 (161)
259 TIGR02886 spore_II_AA anti-sig 27.4 1.3E+02 0.0027 17.1 5.0 41 93-136 56-96 (106)
260 PLN03042 Lactoylglutathione ly 27.1 1.7E+02 0.0038 19.1 4.2 31 108-138 25-57 (185)
261 cd07244 FosA FosA, a Fosfomyci 26.8 99 0.0021 18.0 2.9 28 110-138 3-31 (121)
262 PRK07758 hypothetical protein; 26.7 85 0.0019 18.1 2.4 20 90-109 73-92 (95)
263 cd08364 FosX FosX, a fosfomyci 26.4 84 0.0018 18.7 2.6 28 108-136 4-32 (131)
264 PRK14828 undecaprenyl pyrophos 26.4 1.1E+02 0.0024 21.3 3.3 31 88-118 51-81 (256)
265 PRK14827 undecaprenyl pyrophos 26.1 90 0.0019 22.3 2.9 34 85-118 88-121 (296)
266 COG1213 Predicted sugar nucleo 26.0 2.3E+02 0.0049 19.6 4.6 43 93-135 30-73 (239)
267 PF02268 TFIIA_gamma_N: Transc 25.7 1E+02 0.0022 15.4 2.5 24 85-108 4-27 (49)
268 PRK09318 bifunctional 3,4-dihy 25.2 1.7E+02 0.0036 21.9 4.2 33 105-139 324-356 (387)
269 PRK12303 tumor necrosis factor 25.1 1.6E+02 0.0036 17.9 3.5 32 108-139 123-154 (192)
270 TIGR00100 hypA hydrogenase nic 24.7 1.6E+02 0.0035 17.5 3.6 36 91-126 5-46 (115)
271 TIGR03628 arch_S11P archaeal r 24.6 1.7E+02 0.0037 17.6 6.4 49 91-139 45-105 (114)
272 PF13862 BCIP: p21-C-terminal 24.4 2.2E+02 0.0047 18.8 7.2 62 6-67 4-71 (194)
273 PF14871 GHL6: Hypothetical gl 24.4 1.8E+02 0.0039 17.9 3.9 28 88-115 37-64 (132)
274 COG3250 LacZ Beta-galactosidas 24.4 2.8E+02 0.0061 23.2 5.6 66 75-140 299-366 (808)
275 PRK14830 undecaprenyl pyrophos 24.3 1.3E+02 0.0029 20.9 3.4 31 88-118 46-76 (251)
276 PRK09607 rps11p 30S ribosomal 24.3 1.9E+02 0.004 18.0 6.4 49 91-139 52-112 (132)
277 cd07263 Glo_EDI_BRP_like_16 Th 23.8 1E+02 0.0023 17.3 2.6 18 121-138 10-28 (119)
278 COG3414 SgaB Phosphotransferas 23.6 1.2E+02 0.0026 17.4 2.7 22 89-110 9-32 (93)
279 cd08361 PpCmtC_N N-terminal do 23.6 1.5E+02 0.0032 17.4 3.3 17 121-137 18-35 (124)
280 cd08359 Glo_EDI_BRP_like_22 Th 23.5 1.5E+02 0.0032 16.9 3.2 17 121-137 13-30 (119)
281 PF00411 Ribosomal_S11: Riboso 23.4 1.7E+02 0.0037 17.2 6.4 47 92-138 43-93 (110)
282 cd09013 BphC-JF8_N_like N-term 23.2 99 0.0021 17.9 2.4 28 110-138 8-36 (121)
283 cd09011 Glo_EDI_BRP_like_23 Th 23.0 1E+02 0.0022 17.8 2.5 17 120-136 13-30 (120)
284 PF01697 Glyco_transf_92: Glyc 22.7 2.7E+02 0.0058 19.2 6.9 59 80-139 4-65 (285)
285 PF13704 Glyco_tranf_2_4: Glyc 22.4 1.5E+02 0.0034 16.4 4.9 36 95-130 5-40 (97)
286 PRK00762 hypA hydrogenase nick 22.1 2E+02 0.0043 17.5 3.8 23 91-113 5-27 (124)
287 PHA02456 zinc metallopeptidase 21.8 1.9E+02 0.0042 17.3 4.7 29 77-105 64-92 (141)
288 PF01155 HypA: Hydrogenase exp 21.7 1.8E+02 0.004 17.2 3.3 23 91-113 5-27 (113)
289 PRK10340 ebgA cryptic beta-D-g 21.7 5.3E+02 0.012 22.3 7.7 64 75-138 333-398 (1021)
290 cd02523 PC_cytidylyltransferas 21.4 1.9E+02 0.004 19.2 3.7 27 94-120 29-55 (229)
291 PF02679 ComA: (2R)-phospho-3- 21.2 2.7E+02 0.0059 19.3 4.4 44 96-139 85-134 (244)
292 PRK06724 hypothetical protein; 21.1 1.4E+02 0.003 17.9 2.8 27 108-135 7-37 (128)
293 PRK04101 fosfomycin resistance 21.1 1.3E+02 0.0029 18.0 2.8 28 109-137 5-33 (139)
294 KOG1602 Cis-prenyltransferase 21.1 2.4E+02 0.0053 19.8 4.1 32 87-118 59-90 (271)
295 COG0375 HybF Zn finger protein 21.0 2.1E+02 0.0045 17.3 5.2 37 91-127 5-47 (115)
296 KOG3275 Zinc-binding protein o 20.9 2.1E+02 0.0046 17.4 3.7 72 41-121 22-104 (127)
297 PRK09319 bifunctional 3,4-dihy 20.8 2.1E+02 0.0046 22.6 4.2 34 104-139 346-379 (555)
298 cd07262 Glo_EDI_BRP_like_19 Th 20.8 1.7E+02 0.0037 16.8 3.2 18 121-138 12-33 (123)
299 PRK00393 ribA GTP cyclohydrola 20.8 2.7E+02 0.0057 18.5 4.2 47 83-138 123-169 (197)
300 PRK08533 flagellar accessory p 20.7 2.8E+02 0.0061 18.7 4.7 45 90-134 33-78 (230)
301 cd06422 NTP_transferase_like_1 20.7 1.9E+02 0.0041 19.1 3.6 27 93-119 29-55 (221)
302 KOG4195 Transient receptor pot 20.7 2.5E+02 0.0054 19.3 3.9 90 49-155 129-218 (275)
303 PF05894 Podovirus_Gp16: Podov 20.6 1.4E+02 0.0031 21.6 3.0 42 89-130 25-70 (333)
304 PF04796 RepA_C: Plasmid encod 20.4 2.4E+02 0.0053 18.1 3.8 40 92-136 6-45 (161)
305 cd06587 Glo_EDI_BRP_like This 20.4 1.3E+02 0.0027 16.4 2.5 20 120-139 9-29 (112)
306 PRK09525 lacZ beta-D-galactosi 20.3 5.8E+02 0.013 22.2 7.7 64 75-138 349-414 (1027)
307 TIGR00537 hemK_rel_arch HemK-r 20.3 2.5E+02 0.0053 17.9 4.8 45 95-139 121-165 (179)
308 PHA00771 head assembly protein 20.2 2.3E+02 0.005 17.5 8.8 68 82-153 68-136 (151)
No 1
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.94 E-value=5.4e-25 Score=137.18 Aligned_cols=144 Identities=16% Similarity=0.300 Sum_probs=118.6
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYR 88 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~r 88 (164)
++||+++++|++.+.++.......+|....+..........+.+..++++||++.+..... ...+..++|+|++|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-----~~~~~~i~v~~~~r 76 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVLD-----EATLFNIAVDPDYQ 76 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeecC-----ceEEEEEEECHHHc
Confidence 6799999999999999988777777776655444333333455678899999998865443 34577889999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecccc-ccCCCceeEEeeec
Q 038810 89 GLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYT-NITPPDCYVLTKFI 157 (164)
Q Consensus 89 g~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~-~~~~~~~~~~~k~l 157 (164)
|+|+|+.+++.+++.+.+.++..+.+.+...|.++++||+|+||+..+..+.++. ...+.|.++|.+.|
T Consensus 77 g~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 77 RQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred cCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 9999999999999999988999999999999999999999999999998888853 22378999998865
No 2
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.93 E-value=3.1e-24 Score=145.67 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=123.6
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCCC---CC-ChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEee
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFPV---RY-NDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLG 82 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~ 82 (164)
..+.||+++++|++.+.++..+.++. ++ .++++...+..+...+++..++++||++.+...... ..++|..++
T Consensus 114 ~~~~IR~a~~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~---~~~eI~~i~ 190 (266)
T TIGR03827 114 EGFTLRIATEDDADAMAALYRKVFPTYPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPEN---GNAEMTDFA 190 (266)
T ss_pred CceEEEECCHHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCC---CcEEEEEEE
Confidence 45899999999999999999887642 22 235555555555567788889999999887433322 267899999
Q ss_pred eCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccCCCceeEEeeec
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNITPPDCYVLTKFI 157 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~~~~~~~~~k~l 157 (164)
|+|+|||+|+|+.|++.+++++++.|+..+++.+...|.+++++|+|+||+..++.++. +.++...|..+|.|.|
T Consensus 191 V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 191 TLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999865 6677789999999875
No 3
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.92 E-value=6e-23 Score=129.99 Aligned_cols=146 Identities=20% Similarity=0.375 Sum_probs=112.6
Q ss_pred EEEeccCcccHHHHHHHHHhcCC-------CCCChhHHHHHhhc--CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP-------VRYNDKYYSDALAS--GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIM 79 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~ 79 (164)
+.+|+++++|++.+.++..+... .....+.+...+.. +...+++.+++++||++.+.....+....... .
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~-~ 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVAD-F 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEE-E
Confidence 88999999999999999875311 11233344444433 33567777889999999987543221111223 3
Q ss_pred EeeeCcccccCChHHHHHHHHHHHHHh-cCCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccCCCceeEEee
Q 038810 80 TLGVLAPYRGLGIGTKLLNHVLDLCAK-QNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNITPPDCYVLTK 155 (164)
Q Consensus 80 ~~~v~~~~rg~Gig~~l~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~~~~~~~~~k 155 (164)
.++|+|+|||+|+|+.|++.+++++++ .|...+.+.+...|.+|++||+|+||+..+..+.+ +..+.+.|.++|.+
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~ 160 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR 160 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEEe
Confidence 589999999999999999999999988 58999999999999999999999999999998876 45556778888876
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.92 E-value=1.3e-23 Score=130.64 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=104.1
Q ss_pred eEEEeccCcccHHHHHHHHHhcCCCCCChhH----HHHHhhc-CceEEEEEeCCcEEEEEEeEeeecC-CCeeEEEEEEe
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFPVRYNDKY----YSDALAS-GEFTKLAYYSDICVGAIACRLEKKE-GGAICVYIMTL 81 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~~~i~~~ 81 (164)
+++||+++.+|++.+..+..+..+..+.... +...+.. +..++++.+++++||++.+...... .....++|..+
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheehee
Confidence 4789999999999999998877665554322 3333333 4456777889999999998754321 11124578899
Q ss_pred eeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 82 GVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 82 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
+|+|++||+|+|+.|+.++++.+++.|+..+.+.+...|..|++||+++||+..+.
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 99999999999999999999999999999999999999999999999999987753
No 5
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=122.92 Aligned_cols=146 Identities=27% Similarity=0.397 Sum_probs=117.4
Q ss_pred EEEecc---CcccHHHHHHHHHhcCCCCCChhHHHHHhhc-CceEEEEEeCCc-EEEEEEeEeeecCCCeeEEEEEEeee
Q 038810 9 ISLDGV---RDKNLMQLKKLNIALFPVRYNDKYYSDALAS-GEFTKLAYYSDI-CVGAIACRLEKKEGGAICVYIMTLGV 83 (164)
Q Consensus 9 ~~ir~~---~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~vG~~~~~~~~~~~~~~~~~i~~~~v 83 (164)
..|++. .+..++.+.++....++++++.-........ ++.++++.+++. .||.+.+..+.... ...++|..++|
T Consensus 14 ~~i~~~~~~~~~~l~~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~-~~rgyi~mLaV 92 (165)
T KOG3139|consen 14 EVIRPSLYPAEEYLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRN-TLRGYIAMLAV 92 (165)
T ss_pred eeeeeecchHHHHHHHHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCC-cceEEEEEEEe
Confidence 445554 3444556777777777777766555554444 456777777654 79998888776654 44799999999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeec
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFI 157 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l 157 (164)
+++|||+|||++|++.+++.++++|+..+.+.|...|.+|.++|+++||...+....||.++ .|.+.|...+
T Consensus 93 ~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng--~dA~rl~L~~ 164 (165)
T KOG3139|consen 93 DSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNG--MDALRLKLFF 164 (165)
T ss_pred chhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECC--cceEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999998876 4888877654
No 6
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.6e-22 Score=125.82 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred EEEeccCcccHHHHHHHHHhcCC--------CCCChhHHHHHhhc----CceEEEEEeC-CcEEEEEEeEeeecCCCeeE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP--------VRYNDKYYSDALAS----GEFTKLAYYS-DICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~~~~-~~~vG~~~~~~~~~~~~~~~ 75 (164)
+.||+.+.+|++.+..+.+.... .+-+.+.+.+++.. +...+++..+ |+++|++.+.+.........
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 67999999999999999987765 22233444444433 3345666655 89999999999988876667
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccCCCceeEEe
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNITPPDCYVLT 154 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~~~~~~~~~ 154 (164)
....+++|+|+.||+|+|++|++.++..+...|+..+...+..+|.+|+++++++||+..+..+.. ++.+.+.|..+|.
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~ 161 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQ 161 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeee
Confidence 788899999999999999999999999999999999999999999999999999999999999987 7777899999999
Q ss_pred eecCCC
Q 038810 155 KFITQP 160 (164)
Q Consensus 155 k~l~~~ 160 (164)
+.|...
T Consensus 162 ~~l~~~ 167 (169)
T COG1247 162 LLLEEG 167 (169)
T ss_pred hhhccc
Confidence 998654
No 7
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.91 E-value=1.2e-22 Score=124.22 Aligned_cols=130 Identities=26% Similarity=0.459 Sum_probs=109.4
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHhhcCc-eEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHH
Q 038810 18 NLMQLKKLNIALFPVRYNDKYYSDALASGE-FTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKL 96 (164)
Q Consensus 18 d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l 96 (164)
|++.+.++....++.+|+.+.+...+.... ..+++.+++++||++.+..... ...+..++|+|++||+|+|+.|
T Consensus 1 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-----~~~i~~~~v~~~~rg~G~g~~l 75 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLD-----EAHILNIAVKPEYQGQGIGRAL 75 (131)
T ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecCC-----CeEEEEEEECHHHcCCCHHHHH
Confidence 678899999999999888888887776543 4455666899999999765443 4568889999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEE
Q 038810 97 LNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVL 153 (164)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~ 153 (164)
++.+++++++.++..+.+.+...|.++++||+++||+..+..+.++..+. .|.++|
T Consensus 76 l~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~-~~~~~~ 131 (131)
T TIGR01575 76 LRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPG-EDAIVM 131 (131)
T ss_pred HHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCC-cccccC
Confidence 99999999999999999999999999999999999999999988876654 555543
No 8
>PRK03624 putative acetyltransferase; Provisional
Probab=99.89 E-value=7e-22 Score=122.06 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=100.9
Q ss_pred eEEEeccCcccHHHHHHHHHhcCC-CCCCh--hHHHHHhhc-CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeee
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFP-VRYND--KYYSDALAS-GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGV 83 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v 83 (164)
.+.+|+++++|++.+.++...... ..|.. ..+...... ...++++.+++++||++.+..... ..++..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~-----~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDGH-----RGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccCC-----CceEEEEEE
Confidence 488999999999999999887622 23322 223333333 345777888899999988764332 346778999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
+|+|||+|+|+.|+..+++++++.|+..+.+.+.+.|++++++|+|+||+..+..
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 9999999999999999999999999999999999999999999999999987653
No 9
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.88 E-value=9.9e-21 Score=121.77 Aligned_cols=150 Identities=16% Similarity=0.250 Sum_probs=113.8
Q ss_pred eeEEEeccCcccHHHHHHHHH--hc-------CCCC-CCh----hHHHHHhh---cC-ceEEEEEeCCcEEEEEEeEeee
Q 038810 7 VAISLDGVRDKNLMQLKKLNI--AL-------FPVR-YND----KYYSDALA---SG-EFTKLAYYSDICVGAIACRLEK 68 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~--~~-------~~~~-~~~----~~~~~~~~---~~-~~~~~~~~~~~~vG~~~~~~~~ 68 (164)
..+.+|+++++|++.+..+.. .. ++.. .+. +++..... .+ ...+++..++++||++.+....
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 348999999999999998874 21 1111 122 23332211 12 2357777889999999887653
Q ss_pred cCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccC
Q 038810 69 KEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNIT 146 (164)
Q Consensus 69 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~ 146 (164)
.... .+.+ +++++|+|||+|+|+.++..+++++++. +++++.+.+...|.+|+++++|+||+..+..+.. +.++.
T Consensus 89 ~~~~--~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~ 165 (179)
T PRK10151 89 PLNK--TAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGA 165 (179)
T ss_pred cCCC--ceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCE
Confidence 3211 3445 4679999999999999999999999865 8999999999999999999999999999999866 55666
Q ss_pred CCceeEEeeecCC
Q 038810 147 PPDCYVLTKFITQ 159 (164)
Q Consensus 147 ~~~~~~~~k~l~~ 159 (164)
+.|.++|.+.+..
T Consensus 166 ~~D~~~~~~~~~~ 178 (179)
T PRK10151 166 YDDVNLYARIIDS 178 (179)
T ss_pred EEEEEEEEEeecC
Confidence 8999999998754
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=99.88 E-value=8.7e-21 Score=118.30 Aligned_cols=128 Identities=23% Similarity=0.336 Sum_probs=96.6
Q ss_pred eEEEeccCcccHHHHHHHHHhcCCC-CCChhHHHHHhhc----C--ceEEEEEeCCcEEEEEEeEeeecC--CCeeEEEE
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFPV-RYNDKYYSDALAS----G--EFTKLAYYSDICVGAIACRLEKKE--GGAICVYI 78 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~~-~~~~~~~~~~~~~----~--~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~~i 78 (164)
.+.||+++++|++.+.++....... .++.+.+...... + ...+++..+|++||++.+...... .+...+++
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i 85 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHI 85 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEE
Confidence 3889999999999999998766542 2344333333322 1 234555568899999988644321 22225688
Q ss_pred EEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 79 MTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 79 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
..++|+|+|||+|+|+.|++++++++++.++..+.+.+ |.+|++||+++||+.....
T Consensus 86 ~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 86 EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHHHHHHCCCEEeceE
Confidence 89999999999999999999999999999988886664 6799999999999988743
No 11
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.87 E-value=8.1e-21 Score=119.50 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=98.0
Q ss_pred EeccCcccHHHHHHHHHhcCCCCCChhH-HHHHhhc-CceEEEEE-eCCcEEEEEEeEeeecCCCeeEEEEEEeeeCccc
Q 038810 11 LDGVRDKNLMQLKKLNIALFPVRYNDKY-YSDALAS-GEFTKLAY-YSDICVGAIACRLEKKEGGAICVYIMTLGVLAPY 87 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~ 87 (164)
||+++.+|++.+.++..+.....+.... +...... ....+++. .++++||++.+...... ....++..++|+|++
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~--~~~~~i~~l~V~p~~ 78 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDR--PDVLFVWQVAVDPRA 78 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCC--CCeEEEEEEEEChHh
Confidence 5899999999999999987543322211 1111121 34456666 46799999876543322 226788899999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
||+|+|++|++.++++++..++..+.+.+...|.++++||+|+||+......
T Consensus 79 rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~~ 130 (157)
T TIGR02406 79 RGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHLI 130 (157)
T ss_pred ccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCeE
Confidence 9999999999999999999999999999999999999999999998766554
No 12
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.87 E-value=8.6e-21 Score=119.32 Aligned_cols=138 Identities=26% Similarity=0.405 Sum_probs=102.1
Q ss_pred EeccCcccHHHHHHHHHhc-----CCCC---CCh----hHHHHHh-hcCceEEEEEe-CCcEEEEEEeEeeecCCCeeEE
Q 038810 11 LDGVRDKNLMQLKKLNIAL-----FPVR---YND----KYYSDAL-ASGEFTKLAYY-SDICVGAIACRLEKKEGGAICV 76 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~-----~~~~---~~~----~~~~~~~-~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~ 76 (164)
||+++++|++.+..+.++. +... .+. .++.... ......+++.. +|++||++.+....... ..+
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~--~~~ 78 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYN--HTA 78 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGT--TEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccC--CEE
Confidence 7999999999999998743 2111 122 2333332 23556777776 99999999998654432 144
Q ss_pred EEEEeeeCcccccCChHHHHHHHHHHHH-HhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccCCCcee
Q 038810 77 YIMTLGVLAPYRGLGIGTKLLNHVLDLC-AKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNITPPDCY 151 (164)
Q Consensus 77 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~-~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~~~~~~ 151 (164)
.+ .+.|.|++|++|+|+.|+..+++++ .+.|+..+.+.+...|.++++||+++||+..+..+++ +..+.+.|.+
T Consensus 79 ~~-~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D~~ 154 (155)
T PF13420_consen 79 EL-SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYDVV 154 (155)
T ss_dssp EE-EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEEEE
T ss_pred EE-eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEEeE
Confidence 44 4778899999999999999999999 8889999999999999999999999999999999987 4444455543
No 13
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.87 E-value=6.6e-21 Score=123.66 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=99.8
Q ss_pred eEEEeccCcccHHHHHHHHHhcCC-----CCCC-h----hHHHH----Hhhc--CceEEE-EEeCCcEEEEEEeEeeecC
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFP-----VRYN-D----KYYSD----ALAS--GEFTKL-AYYSDICVGAIACRLEKKE 70 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~-----~~~~-~----~~~~~----~~~~--~~~~~~-~~~~~~~vG~~~~~~~~~~ 70 (164)
.+.||+++++|++.+.++..+.+. .+|. + .++.. .... ....++ +..+|++||++.+......
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~ 122 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDT 122 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCC
Confidence 368999999999999999987753 2232 1 12222 2222 223333 3457899999988755432
Q ss_pred CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 71 GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 71 ~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
..++..++|+|++||+|+|+.|++.+++++++.|+..+.+.+..+|.+|++||+|+||+..+...
T Consensus 123 ----~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~ 187 (191)
T TIGR02382 123 ----DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTAY 187 (191)
T ss_pred ----ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCcccccee
Confidence 45788889999999999999999999999999999999999999999999999999999887653
No 14
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=120.66 Aligned_cols=148 Identities=26% Similarity=0.452 Sum_probs=119.1
Q ss_pred eeEEEeccCcccHH--HHHHHHHhcCC--CCCChhHHHHHhhcCce-EEEEEe---CC----cEEEEEEeEeeecC-CCe
Q 038810 7 VAISLDGVRDKNLM--QLKKLNIALFP--VRYNDKYYSDALASGEF-TKLAYY---SD----ICVGAIACRLEKKE-GGA 73 (164)
Q Consensus 7 ~~~~ir~~~~~d~~--~i~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~---~~----~~vG~~~~~~~~~~-~~~ 73 (164)
....++++...|+. .+..+....+. .+|+...+...+..... .+++.. ++ .++|++........ ...
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 89 (177)
T COG0456 10 DKVTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSAD 89 (177)
T ss_pred cceehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCcccc
Confidence 45788999999998 88888888888 58998888888877544 444544 33 59999988633321 001
Q ss_pred eEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCC-cEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeE
Q 038810 74 ICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNI-SEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYV 152 (164)
Q Consensus 74 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~-~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~ 152 (164)
...+|..++|+|+|||+|||++|++.+++.+.+.+. ..+.+.|..+|.++++||+++||+..+....||.++.. +.+.
T Consensus 90 ~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~~-~a~~ 168 (177)
T COG0456 90 HEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGNG-DALL 168 (177)
T ss_pred CccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCcc-hhHH
Confidence 256899999999999999999999999999999986 89999999999999999999999999999999888642 3454
Q ss_pred Eee
Q 038810 153 LTK 155 (164)
Q Consensus 153 ~~k 155 (164)
|.+
T Consensus 169 ~~~ 171 (177)
T COG0456 169 MLK 171 (177)
T ss_pred HHH
Confidence 444
No 15
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.86 E-value=3e-20 Score=113.14 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=93.6
Q ss_pred EEeccCcccHHHHHHHHHhcCCCCCChhH----HHHHhhcCceEEEEEeCCcEEEEEEeEeeecC---CCeeEEEEEEee
Q 038810 10 SLDGVRDKNLMQLKKLNIALFPVRYNDKY----YSDALASGEFTKLAYYSDICVGAIACRLEKKE---GGAICVYIMTLG 82 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~~~~~~~i~~~~ 82 (164)
+||+++++|++++.++.+.+|+....... ...... +..++++++++++||++.+.+..-. ......++..++
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 48999999999999999999987766642 222222 5678999999999999998876332 112378999999
Q ss_pred eCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEe
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~ 135 (164)
|+|+|||+|+|++|++++++.+++.|+..+.+.. ....||+++||+..
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 9999999999999999999999999999777764 23689999999863
No 16
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.86 E-value=8.2e-20 Score=109.50 Aligned_cols=139 Identities=21% Similarity=0.181 Sum_probs=107.9
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCC-------CCCChhHHHH--HhhcC-ceEEEEEe---CCcEEEEEEeEeeecCCCe
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFP-------VRYNDKYYSD--ALASG-EFTKLAYY---SDICVGAIACRLEKKEGGA 73 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~-------~~~~~~~~~~--~~~~~-~~~~~~~~---~~~~vG~~~~~~~~~~~~~ 73 (164)
+.++||.++++|.+.+.+++.+.-. ...++..+.. ..+.+ ..++++.. ++.++|++.+......--.
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~ 81 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLG 81 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccc
Confidence 3489999999999999999886532 2222333333 22322 22333333 6789999998877665332
Q ss_pred -eEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecccccc
Q 038810 74 -ICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNI 145 (164)
Q Consensus 74 -~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~ 145 (164)
...++..++|.|+|||+|+|+.|++.+.+.|.+.|+.++...+..-|.+|+.||++.|++.....+-+..++
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l~r~~G 154 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRLFRRTG 154 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccceeEEEEech
Confidence 588999999999999999999999999999999999999999999999999999999999988865554433
No 17
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.86 E-value=1.9e-19 Score=117.25 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=110.3
Q ss_pred eEEEeccCcccHHHHHHHHHhc--CCCCCC---------h-------hHHHHHhhcC-ceEEEEEe--CCcEEEEEEeEe
Q 038810 8 AISLDGVRDKNLMQLKKLNIAL--FPVRYN---------D-------KYYSDALASG-EFTKLAYY--SDICVGAIACRL 66 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~--~~~~~~---------~-------~~~~~~~~~~-~~~~~~~~--~~~~vG~~~~~~ 66 (164)
.+.||+++++|++.+.++..+. +..+|. . .++......+ ...+++.. ++++||.+.+..
T Consensus 17 rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~ 96 (194)
T PRK10809 17 RLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSN 96 (194)
T ss_pred cEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEe
Confidence 4889999999999999987752 211221 1 1112222233 33455543 578999999875
Q ss_pred eecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecceeccc-cc
Q 038810 67 EKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYY-TN 144 (164)
Q Consensus 67 ~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~-~~ 144 (164)
.... ....+ ..+++|+|+|||+|+|+.+++.+++++++. |++++.+.+.+.|.+|+++|+|+||+..+..+.++ .+
T Consensus 97 ~~~~-~~~~~-eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~~~~~~ 174 (194)
T PRK10809 97 VVRG-SFHAC-YLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLID 174 (194)
T ss_pred ecCC-CeeeE-EEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeeccccccC
Confidence 5431 11133 346789999999999999999999999875 99999999999999999999999999999888764 45
Q ss_pred cCCCceeEEeeecC
Q 038810 145 ITPPDCYVLTKFIT 158 (164)
Q Consensus 145 ~~~~~~~~~~k~l~ 158 (164)
+.+.|.++|.+...
T Consensus 175 g~~~d~~~~~~~~~ 188 (194)
T PRK10809 175 GQWRDHVLTALTTP 188 (194)
T ss_pred CeEEEEEEeeeehh
Confidence 56788888887654
No 18
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.85 E-value=7.2e-20 Score=119.15 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=100.0
Q ss_pred EEEeccCcccHHHHHHHHHhcCC-----CCC-Ch----hHHHHHhh----c--CceEEEEE-eCCcEEEEEEeEeeecCC
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP-----VRY-ND----KYYSDALA----S--GEFTKLAY-YSDICVGAIACRLEKKEG 71 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~-----~~~-~~----~~~~~~~~----~--~~~~~~~~-~~~~~vG~~~~~~~~~~~ 71 (164)
..||+++++|++.+.++..+.+. .+| +. .++..++. . ....+++. +++++||++.+......
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~- 125 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDT- 125 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCC-
Confidence 67899999999999999887644 123 21 22333322 1 22444554 46789999988754332
Q ss_pred CeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 72 GAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 72 ~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
..++..++|+|+|||+|+|++|++.+++++++.|+..+.+.+...|.++++||+|+||+..++..
T Consensus 126 ---~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 126 ---DARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred ---ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 46788899999999999999999999999999999999999999999999999999999988765
No 19
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.85 E-value=2.4e-19 Score=115.98 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=111.5
Q ss_pred eEEEeccCcccHHHHHHHHHhcCC------CCCCh-----hHHHHHh-hcCceEEEEEeCCcEEEEEEeEeeecCCCeeE
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFP------VRYND-----KYYSDAL-ASGEFTKLAYYSDICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~------~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 75 (164)
.+.+|+++++|++.+.++..+... .++.. .++.... ......|++..+|++||++.+........ .
T Consensus 6 ~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~--~ 83 (186)
T PRK15130 6 SVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHR--R 83 (186)
T ss_pred eeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCC--e
Confidence 489999999999999998654321 11111 1122222 22445777788999999998876543221 3
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHh-cCCcEEEEEEecCChHHHHHHHHcCCeEecceeccc-cccCCCceeEE
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAK-QNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYY-TNITPPDCYVL 153 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~-~~~~~~~~~~~ 153 (164)
..+ .++|+|+|||+|+|+.+++.+++++++ .|+.++.+.+...|.+|+++|+|+||+..+..+.++ .++.+.|.+.|
T Consensus 84 ~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~ 162 (186)
T PRK15130 84 AEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRM 162 (186)
T ss_pred EEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEE
Confidence 333 589999999999999999999999986 499999999999999999999999999999988664 45567788888
Q ss_pred eeec
Q 038810 154 TKFI 157 (164)
Q Consensus 154 ~k~l 157 (164)
...-
T Consensus 163 ~~~~ 166 (186)
T PRK15130 163 CIFQ 166 (186)
T ss_pred EeeH
Confidence 7754
No 20
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.85 E-value=7.2e-20 Score=103.35 Aligned_cols=82 Identities=35% Similarity=0.509 Sum_probs=75.6
Q ss_pred EEeCCcEEEEEEeEeeecCC-CeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHc
Q 038810 52 AYYSDICVGAIACRLEKKEG-GAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKF 130 (164)
Q Consensus 52 ~~~~~~~vG~~~~~~~~~~~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 130 (164)
++++|++||++.+....... ....+++..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+...|..+++||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 46899999999999888752 13389999999999999999999999999999999999999999999999999999999
Q ss_pred CCe
Q 038810 131 GFD 133 (164)
Q Consensus 131 GF~ 133 (164)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 21
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.85 E-value=2e-19 Score=112.58 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=96.8
Q ss_pred eeEEEeccCcccHH-HHHHHHHhcCC-CCCChhHHHHHhhc------CceEEEEEe--CCcEEEEEEeEeeec--CCCee
Q 038810 7 VAISLDGVRDKNLM-QLKKLNIALFP-VRYNDKYYSDALAS------GEFTKLAYY--SDICVGAIACRLEKK--EGGAI 74 (164)
Q Consensus 7 ~~~~ir~~~~~d~~-~i~~l~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~--~~~~vG~~~~~~~~~--~~~~~ 74 (164)
+.+.||+++++|++ .+..+...... .+++.+.+...+.. ....+++.+ ++++||++.+..... .....
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGK 84 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCc
Confidence 44889999999998 48888776543 45665555444421 223445555 589999988753321 11122
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
..++..++|+|+|||+|||+.|++.+++++++.|+..+.+.+.+.|. +||+|+||+..+.
T Consensus 85 ~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 85 VGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 56788899999999999999999999999999999999999999884 5999999998764
No 22
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.84 E-value=2e-19 Score=112.76 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=96.8
Q ss_pred EeccC-cccHHHHHHHHHhcC-----CCCCCh---hHHHHHhh--cCceEEEEEeCCcEEEEEEeEeeecCC--CeeEEE
Q 038810 11 LDGVR-DKNLMQLKKLNIALF-----PVRYND---KYYSDALA--SGEFTKLAYYSDICVGAIACRLEKKEG--GAICVY 77 (164)
Q Consensus 11 ir~~~-~~d~~~i~~l~~~~~-----~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~~ 77 (164)
||+++ .+|++.|.++.++.. ...++. +.+...+. .....+++..||+++|++.+....... ......
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 68999 999999999986542 233332 22333443 245688899999999999886532221 122677
Q ss_pred EEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 78 IMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 78 i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
+..++++|++||+|+|+.+++.+++.+++. ++..+.+.+..+|.+++++|+|+||+.++++.
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 888999999999999999999999999987 89999999999999999999999999999986
No 23
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=113.20 Aligned_cols=154 Identities=24% Similarity=0.349 Sum_probs=128.6
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhc-CceEEEEEe-CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALAS-GEFTKLAYY-SDICVGAIACRLEKKEGGAICVYIMTLGVLAP 86 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~ 86 (164)
.++|+++..|+-.+..+.-+...+.++-.+.-..+.. +..+.++.. ++++-|++.....+ .....+.++..+.|.|+
T Consensus 2 tt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg-~~~~wh~HvTAltVap~ 80 (173)
T KOG3234|consen 2 TTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEG-KDTEWHGHVTALTVAPD 80 (173)
T ss_pred CccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccc-cCcceeeEEEEEEechh
Confidence 4589999999888887777777777777776666555 555555554 57899998885444 44455889999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCCCCCC
Q 038810 87 YRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQPQPK 163 (164)
Q Consensus 87 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~ 163 (164)
||+.|+|+.|+..+++.....+...+.+.+..+|+-|+.+|+++||....++..||..+...|.+.|+|.|+.+.+|
T Consensus 81 ~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD~dk 157 (173)
T KOG3234|consen 81 YRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRDVDK 157 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccCccc
Confidence 99999999999999999888788889999999999999999999999999999999877778999999999887765
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.84 E-value=2.3e-19 Score=114.08 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=95.2
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCCCCC-ChhHHHHHhhcCceEEEEE-eCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFPVRY-NDKYYSDALASGEFTKLAY-YSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
+++.+|+++++|.+.+..+......... ........+.....++++. .++++||++.+...... .+.+..++|+
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~~~----~~~i~~l~V~ 79 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMWED----LAEIRTVAVD 79 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecCCC----ceEEEEEEEC
Confidence 3489999999999999999876543221 1222223333444567777 88999999887654332 5678899999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
|++||+|+|++|++++++++++.|+..+.+.+. +.+||+|+||+..+..
T Consensus 80 p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 80 PAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDGT 128 (169)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECccc
Confidence 999999999999999999999999999987764 3689999999997643
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.83 E-value=4e-19 Score=130.87 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=107.1
Q ss_pred eeEEEecc-CcccHHHHHHHHHhcCCCCCChhHHHHHhhc-CceEEEEEe--CCcEEEEEEeEeeec--CCCeeEEEEEE
Q 038810 7 VAISLDGV-RDKNLMQLKKLNIALFPVRYNDKYYSDALAS-GEFTKLAYY--SDICVGAIACRLEKK--EGGAICVYIMT 80 (164)
Q Consensus 7 ~~~~ir~~-~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~vG~~~~~~~~~--~~~~~~~~i~~ 80 (164)
..+.||++ +++|++.+.++.......++...++...+.. ...++++.+ +|++||++.+..... .......++..
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~ 160 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWC 160 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEE
Confidence 34889997 7899999999999876666666665544433 455677765 589999987643221 11122467889
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
++|+|+|||+|+|++|++.+++++++.|+..+.+.+..+|.++++||+|+||+.+..+..
T Consensus 161 l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 161 LAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 999999999999999999999999999999999999999999999999999998876653
No 26
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.83 E-value=1.7e-20 Score=112.94 Aligned_cols=148 Identities=25% Similarity=0.425 Sum_probs=125.2
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHh-hcCceEEEEEe-CCcEEEEEEeEeeecCCC-eeEEEEEEeeeCc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDAL-ASGEFTKLAYY-SDICVGAIACRLEKKEGG-AICVYIMTLGVLA 85 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~-~~~~~i~~~~v~~ 85 (164)
+.||.++.+|+-.+..+..-+.|+.+.-.++-... .-+...|++.+ +|++||++......++.. .++.+|.+++|..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 56899999999998888877888777766655444 44778899985 689999998887765433 3388999999999
Q ss_pred ccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHH-HcCCeEecceeccccccCCCceeEEeeecC
Q 038810 86 PYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYK-KFGFDITDTIKNYYTNITPPDCYVLTKFIT 158 (164)
Q Consensus 86 ~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~-~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~ 158 (164)
.||+.|||.+|+..+.....+. +...+.+.++.+|.+++++|+ .+||+.......||.+++ |.+.|.|.|+
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGe--dAyaM~~~L~ 154 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGE--DAYAMRKDLS 154 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccH--HHHHHHHHHH
Confidence 9999999999999988776655 788999999999999999999 899999999999999975 8888988874
No 27
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.83 E-value=6.3e-19 Score=110.94 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=105.8
Q ss_pred EEeccCcccHHHHHHHHHhcC------CCC-CCh----hHHHHHhhc-CceEEEEEeCCcEEEEEEeEeeecCCCeeEEE
Q 038810 10 SLDGVRDKNLMQLKKLNIALF------PVR-YND----KYYSDALAS-GEFTKLAYYSDICVGAIACRLEKKEGGAICVY 77 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~------~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 77 (164)
.+||++++|++.+.++..+.. ... .+. .++...... ....+++..+|++||++.+........ ...
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~--~~~ 79 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHK--SAF 79 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhC--eEE
Confidence 479999999999998864321 111 232 333443333 235677778999999999976553211 344
Q ss_pred EEEeeeCcccccCChHHHHHHHHHHHHHh-cCCcEEEEEEecCChHHHHHHHHcCCeEecceecc-ccccCCCceeEE
Q 038810 78 IMTLGVLAPYRGLGIGTKLLNHVLDLCAK-QNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNITPPDCYVL 153 (164)
Q Consensus 78 i~~~~v~~~~rg~Gig~~l~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~~~~~~~~~ 153 (164)
++ +++.|.+| +|+|+.++..+++++++ .++..+.+.+...|.+|++||+|+||+..+..+.+ +.++...|.++|
T Consensus 80 ~g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~ 155 (156)
T TIGR03585 80 WG-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM 155 (156)
T ss_pred EE-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEe
Confidence 43 44899999 99999999999999986 49999999999999999999999999999999876 555667777776
No 28
>PRK07757 acetyltransferase; Provisional
Probab=99.83 E-value=7.4e-19 Score=110.21 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=92.7
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCC-hhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCccc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYN-DKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPY 87 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~ 87 (164)
+.+|+++++|++.+.++.....+..+. ..............+++..++++||++.+...... ..++..++|+|+|
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~~~~----~~~i~~v~V~p~~ 77 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHILWED----LAEIRSLAVSEDY 77 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEeccCC----ceEEEEEEECHHH
Confidence 689999999999999998765432221 11112222222346777889999999998765433 5678899999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
||+|+|+.|+..+++.+.+.|+..+.+.+. +.+||+|+||+..+..
T Consensus 78 rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~~ 123 (152)
T PRK07757 78 RGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDKE 123 (152)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEcccc
Confidence 999999999999999999889888876553 4689999999999774
No 29
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.82 E-value=7.4e-19 Score=122.29 Aligned_cols=124 Identities=15% Similarity=0.244 Sum_probs=103.7
Q ss_pred eeeEEEeccCcccHHHHHHHHHhc--CC---CCCChhHHHHHhhcCceEEEEE--e---CCcEEEEEEeEeeecCCCeeE
Q 038810 6 EVAISLDGVRDKNLMQLKKLNIAL--FP---VRYNDKYYSDALASGEFTKLAY--Y---SDICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 6 ~~~~~ir~~~~~d~~~i~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~--~---~~~~vG~~~~~~~~~~~~~~~ 75 (164)
.|.++||+++++|++.+.++.... |. ..|+.+.+...+..+ ..+++. + ++.+||++.+..... .
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~~~~~~~~d~~gd~givG~~~~~~~~~-----~ 257 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-EIVTVSMSDRFGDSGIIGIFVFEKKEG-----N 257 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-CEEEEEEEecCCCCceEEEEEEEecCC-----c
Confidence 467899999999999999998876 43 567778888887665 444443 2 567999998765433 6
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEe--cCChHHHHHHHHcCCeEe
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQ--TNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~--~~n~~~~~~~~~~GF~~~ 135 (164)
++|..++|+|.+||+|+|+.|++++++.+++.|+..+.+.+. ..|.+++.||+++||+..
T Consensus 258 ~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 258 LFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 789999999999999999999999999999999999999876 479999999999999854
No 30
>PHA00673 acetyltransferase domain containing protein
Probab=99.82 E-value=1e-18 Score=107.39 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=96.4
Q ss_pred cCcccHHHHHHHHHhcCC-----CCCCh----hHHHHHhhc-CceEEEEEeCCcEEEEEEeEeeecC--CCeeEEEEEEe
Q 038810 14 VRDKNLMQLKKLNIALFP-----VRYND----KYYSDALAS-GEFTKLAYYSDICVGAIACRLEKKE--GGAICVYIMTL 81 (164)
Q Consensus 14 ~~~~d~~~i~~l~~~~~~-----~~~~~----~~~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~~i~~~ 81 (164)
++.+|++.|..|..+.-. ....+ ..+.....+ +...++++++|++||++.+...+.. .+.+.+.|..+
T Consensus 12 A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l 91 (154)
T PHA00673 12 AELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESI 91 (154)
T ss_pred ccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEE
Confidence 588999999999876211 01111 124555555 5567788889999999988777643 33457799999
Q ss_pred eeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 82 GVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 82 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
.|+|++||+|||++|+++++++++++|+..+++...++- ..+.||.++|++.+..
T Consensus 92 ~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~-~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 92 FVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEG-RLVQLLPAAGYRETNR 146 (154)
T ss_pred EEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCc-cchHHHHhCCchhhch
Confidence 999999999999999999999999999999999877654 6899999999988763
No 31
>PRK10514 putative acetyltransferase; Provisional
Probab=99.82 E-value=1.4e-18 Score=108.13 Aligned_cols=132 Identities=24% Similarity=0.226 Sum_probs=94.7
Q ss_pred EEEeccCcccHHHHHHHHHhcCC------CCCChhHHHHHhh---cCceEEEEE-eCCcEEEEEEeEeeecCCCeeEEEE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP------VRYNDKYYSDALA---SGEFTKLAY-YSDICVGAIACRLEKKEGGAICVYI 78 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i 78 (164)
+.||+++++|++.+.++..+.+. ..+....+...+. ....++++. .++++||++.+... .+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~---------~~ 72 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSGG---------HM 72 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEecC---------cE
Confidence 67999999999999998875321 1222333332222 123345554 57899999887421 25
Q ss_pred EEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEee
Q 038810 79 MTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTK 155 (164)
Q Consensus 79 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k 155 (164)
..++|+|+|||+|+|++|++.+++.+ ..+.+.+...|.++++||+|+||+..+...... .+.+.+.+.|+.
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~-~~~~~~~~~~~~ 143 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDD-QGRPYPLLHLAY 143 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCC-CCCccceEEEEe
Confidence 57889999999999999999999864 357788899999999999999999998876432 333466666653
No 32
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=114.24 Aligned_cols=150 Identities=48% Similarity=0.857 Sum_probs=130.8
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCC------eeEEEEEEee
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGG------AICVYIMTLG 82 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~------~~~~~i~~~~ 82 (164)
+.++++++.++..+.++....||..+...++...+......-+|..++..+|...+........ ....+|..++
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~Lg 96 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILSLG 96 (187)
T ss_pred eeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEeec
Confidence 8899999999999999999999999999999999988777777777777777777666654421 1148899999
Q ss_pred eCcccccCChHHHHHHHHHHHHHhcC-CcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecC
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAKQN-ISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFIT 158 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~ 158 (164)
|.+.||.+|||+.|++.+.+++.+.. +..+++++...|..++.||++.||+.......||......+...+.+.+.
T Consensus 97 vl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l~~~~~ 173 (187)
T KOG3138|consen 97 VLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFLRKLLI 173 (187)
T ss_pred ccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhhhhhee
Confidence 99999999999999999999999887 88899999999999999999999999999999998887777777777663
No 33
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.80 E-value=6.8e-18 Score=105.42 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=116.4
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhc-----CceEEEEEeCCcEEEEEEeEeeecC-CCeeEEEEEE
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALAS-----GEFTKLAYYSDICVGAIACRLEKKE-GGAICVYIMT 80 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~~~i~~ 80 (164)
|++.||..++.|.+.+.++..+.|. .+........+.. ....+++.++|++||.+.+++..-. .......+..
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~-~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFG-PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhh-cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 4588999999999999999999888 3344444333333 3568899999999999999988765 2234778999
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCC
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQ 159 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~ 159 (164)
++|+|++||||||++|++..++.++..|+..+.+.-.+ .+|.++||+......-+-+.+ ..+...|.+.|..
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp------~YY~rfGF~~~~~~~l~~p~~-~~~~~fl~~~L~~ 152 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP------TYYSRFGFEPAAGAKLYAPGP-VPDERFLALELGD 152 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc------ccccccCcEEccccccccCCC-CCCceEEEEEccC
Confidence 99999999999999999999999999999988776433 599999999999877654443 4678888888754
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=99.80 E-value=1e-18 Score=108.97 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=94.9
Q ss_pred EEeccCcccHHHHHHHHHhcCC----CCCChhHH-----------HHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCee
Q 038810 10 SLDGVRDKNLMQLKKLNIALFP----VRYNDKYY-----------SDALASGEFTKLAYYSDICVGAIACRLEKKEGGAI 74 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 74 (164)
+||+++++|++.+.++....+. ..++++.. ...+. ...++++.++|++||++.+..
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~~-------- 72 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCIE-------- 72 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEehh--------
Confidence 5899999999999999775532 22332222 22222 345777888999999988742
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEe
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLT 154 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~ 154 (164)
.++..++|+|++||+|+|++|++++++.+.. + .+. .|..+++||+|+||+..+..+.-. .+...+.+.|.
T Consensus 73 -~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l--~v~-~~~~a~~~Y~k~Gf~~~g~~~~~~-~g~~~~~~~m~ 142 (147)
T PRK09831 73 -HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----L--TVD-ASITAKPFFERYGFQTVKQQRVEC-RGEWFINFYMR 142 (147)
T ss_pred -ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----e--Eee-cchhhHHHHHHCCCEEeeccceEE-CCEEEEeeEEE
Confidence 2477899999999999999999999998765 2 222 246899999999999999976323 34467888888
Q ss_pred eec
Q 038810 155 KFI 157 (164)
Q Consensus 155 k~l 157 (164)
|..
T Consensus 143 ~~~ 145 (147)
T PRK09831 143 YKP 145 (147)
T ss_pred ecC
Confidence 753
No 35
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.80 E-value=8.8e-18 Score=115.87 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=98.9
Q ss_pred eEEEeccCc-ccHHHHHHHHHhcCC-----CCCChhHHHHHhhc----CceEEEEEe--CCcEEEEEEeEeeecCCCeeE
Q 038810 8 AISLDGVRD-KNLMQLKKLNIALFP-----VRYNDKYYSDALAS----GEFTKLAYY--SDICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 8 ~~~ir~~~~-~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~--~~~~vG~~~~~~~~~~~~~~~ 75 (164)
.+++|+++. .|.+.+..+.+..+. ..|..+.+...... +...+++.+ ++++||++.+....... ..
T Consensus 149 g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~--~~ 226 (292)
T TIGR03448 149 GVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEP--AL 226 (292)
T ss_pred CeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCC--ce
Confidence 488999864 588888888777665 23555544433221 334667776 58999997655433211 14
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
.++..++|+|+|||+|+|+.|+..+++++++.|+..+.+.+...|..+++||+|+||+......
T Consensus 227 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~~ 290 (292)
T TIGR03448 227 GEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVDV 290 (292)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccccc
Confidence 5666789999999999999999999999999999999999999999999999999999877644
No 36
>PRK10314 putative acyltransferase; Provisional
Probab=99.80 E-value=8.7e-19 Score=109.63 Aligned_cols=138 Identities=22% Similarity=0.267 Sum_probs=99.6
Q ss_pred EeccCcccHHHHHHHHHhcCCCCCChhH--HHHHh-hcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCccc
Q 038810 11 LDGVRDKNLMQLKKLNIALFPVRYNDKY--YSDAL-ASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPY 87 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~ 87 (164)
+..++.+++..+..+..+.|-.++...+ +...- .....++++.+++++||++.+.+..... ...+|..++|+|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~--~~~~i~rv~V~~~~ 86 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDL--EPVVIGRVIVSEAL 86 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCC--CCEEEEEEEECHHH
Confidence 3556777788888888888764433221 11111 1135677788899999999988653321 15789999999999
Q ss_pred ccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeec
Q 038810 88 RGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFI 157 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l 157 (164)
||+|+|++|++.+++.+++. +...+.+.+. ..+..||+|+||+..+.. |...+ ..++.|.|.+
T Consensus 87 rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~---~~a~~fY~k~GF~~~g~~--f~~~G--i~h~~M~~~~ 150 (153)
T PRK10314 87 RGEKVGQQLMSKTLESCTRHWPDKPVYLGAQ---AHLQNFYQSFGFIPVTEV--YEEDG--IPHIGMAREV 150 (153)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCCcEEEehH---HHHHHHHHHCCCEECCCc--cccCC--CCcHhhhhhh
Confidence 99999999999999999875 6677777653 478899999999998864 32232 4677777654
No 37
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.79 E-value=5.3e-18 Score=101.72 Aligned_cols=103 Identities=28% Similarity=0.353 Sum_probs=78.9
Q ss_pred cHHHHHHHHHhcCC---C----------CCChhHHHHHhhcC-ceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeee
Q 038810 18 NLMQLKKLNIALFP---V----------RYNDKYYSDALASG-EFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGV 83 (164)
Q Consensus 18 d~~~i~~l~~~~~~---~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v 83 (164)
|++++.++..+.+. . .+..+.+...+..+ ..++++.+++++||++.+. . ...|..++|
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~---~-----~~~i~~l~v 72 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE---P-----DGEISHLYV 72 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE---T-----CEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc---C-----CCeEEEEEE
Confidence 66777777665432 1 13456666677664 5788999999999999986 1 223888999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCC
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGF 132 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF 132 (164)
+|+|||+|+|++|++.+++.+++ |+..+.+. .|..+.+||+++||
T Consensus 73 ~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 73 LPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred ChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 99999999999999999999976 88866666 78899999999998
No 38
>PRK10562 putative acetyltransferase; Provisional
Probab=99.79 E-value=1.9e-17 Score=102.98 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=95.6
Q ss_pred EeccCcccHHHHHHHHHhcCC--CCCCh-hHH-------HHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEE
Q 038810 11 LDGVRDKNLMQLKKLNIALFP--VRYND-KYY-------SDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMT 80 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~--~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~ 80 (164)
||+++.+|++.+.++...... .++.. ..+ ..........+++..++++||++.+... ..+..
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~--------~~i~~ 73 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG--------RFVGA 73 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec--------cEEEE
Confidence 799999999999999876432 22221 111 1112223346677788999999987532 14677
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeec
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFI 157 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l 157 (164)
++|+|+|||+|+|+.|++++++. ...+.+.+...|..+++||+|+||+.++.. ++.++ ..++.+|...-
T Consensus 74 ~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~--~~~~~-~~~~~~~~~~~ 142 (145)
T PRK10562 74 LFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA--WQEET-QHPTWIMSWQA 142 (145)
T ss_pred EEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEcccc--ccCCC-CCEEEEEEecC
Confidence 89999999999999999988774 356788889999999999999999999853 44443 36778777653
No 39
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.79 E-value=5.3e-18 Score=122.23 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=94.8
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhc-CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCccc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALAS-GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPY 87 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~ 87 (164)
+.||+++++|++.+.++.+......|...+....+.. ...++++.++++++|++.+.+..... .+++..++|+|+|
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~---~~~I~~l~V~p~~ 359 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSIIEHDGNIIGCAALYPYAEED---CGEMACLAVSPEY 359 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCC---eEEEEEEEECHHH
Confidence 4699999999999999987554444433333333322 23456777899999999988764322 6788899999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
||+|+|++|+++++++++++|+..+.+.+ . .+.+||+++||+..+..
T Consensus 360 Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~--~--~a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 360 QDGGRGERLLAHIEDRARQMGISRLFVLT--T--RTGHWFRERGFQTASVD 406 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCEEEEee--c--chHHHHHHCCCEECChh
Confidence 99999999999999999999998876543 3 35799999999999873
No 40
>PLN02825 amino-acid N-acetyltransferase
Probab=99.78 E-value=4.9e-18 Score=123.10 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=96.5
Q ss_pred EEEeccCcccHHHHHHHHHhcCCC----CCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPV----RYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
-.||+++.+|++.+.++....... .++.+.+... ...++++..|+++||++.+.+..... .+++..++|+
T Consensus 368 e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~e---i~~f~V~e~Dg~IVG~aal~~~~~~~---~aEI~~laV~ 441 (515)
T PLN02825 368 EGTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLRA---LDSFVVVEREGSIIACAALFPFFEEK---CGEVAAIAVS 441 (515)
T ss_pred hhheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHhc---CCcEEEEEECCEEEEEEEEEeecCCC---cEEEEEEEEC
Confidence 358999999999999999765432 2333333332 23577888899999999887665432 6789999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
|+|||+|+|++|++++++.+++.|+..+.+.+. .+.+||+++||+..+..
T Consensus 442 P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt----~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 442 PECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT----RTADWFVRRGFSECSIE 491 (515)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC----cHHHHHHHCCCEEeChh
Confidence 999999999999999999999999999988762 57899999999987763
No 41
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.77 E-value=6.9e-18 Score=122.13 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=93.1
Q ss_pred EEEeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
+.||+++.+|++.+.++...... ..|..+.+... ...++++.+++++||++.+....... .++|..++|+
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~---~~~~~va~~dg~iVG~~~~~~~~~~~---~~~I~~l~V~ 368 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQGILVRRSREQLERE---IDKFTVIERDGLIIGCAALYPFPEEK---MGEMACLAVH 368 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhcc---cCcEEEEEECCEEEEEEEEEEcCCCC---eEEEEEEEEC
Confidence 57899999999999998764322 23333333222 23467788899999998877654322 6789999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
|+|||+|+|++|++++++++++.|+..+.+.+ ..+++||+++||+..+.
T Consensus 369 p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 369 PDYRGSGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDV 417 (441)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECCh
Confidence 99999999999999999999999999886643 36899999999999987
No 42
>PHA01807 hypothetical protein
Probab=99.77 E-value=2e-17 Score=102.81 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=88.8
Q ss_pred ccCcccHHHHHHHHHhcC---CCC--CC--hhHHHHHh----hcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEe
Q 038810 13 GVRDKNLMQLKKLNIALF---PVR--YN--DKYYSDAL----ASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTL 81 (164)
Q Consensus 13 ~~~~~d~~~i~~l~~~~~---~~~--~~--~~~~~~~~----~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~ 81 (164)
.++.+|++.+..+..+.+ |.. |. ++...... ......+++++++++||++.+.............+..+
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 467888888888876553 332 33 22222222 22455678888999999999876654322223334557
Q ss_pred eeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHc
Q 038810 82 GVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKF 130 (164)
Q Consensus 82 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 130 (164)
+|+|+|||+|+|++|++.+++++++.|+..+.+.+...|.++++||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999985
No 43
>PRK01346 hypothetical protein; Provisional
Probab=99.77 E-value=2.5e-17 Score=118.52 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=103.2
Q ss_pred eeeEEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhh--cCceEEEEEeCCcEEEEEEeEeeecCC----CeeEEEEE
Q 038810 6 EVAISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALA--SGEFTKLAYYSDICVGAIACRLEKKEG----GAICVYIM 79 (164)
Q Consensus 6 ~~~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vG~~~~~~~~~~~----~~~~~~i~ 79 (164)
.|.++||+++++|++++.++....|....+......... .....+++++++++||++.+.+..... ..+..+|.
T Consensus 4 ~~~~~iR~~~~~D~~~i~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~ 83 (411)
T PRK01346 4 DMAITIRTATEEDWPAWFRAAATGFGDSPSDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVT 83 (411)
T ss_pred CCCceeecCCHHHHHHHHHHHHHHcCCCCChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEE
Confidence 355899999999999999999999886555444433332 234567888899999999987654221 12478999
Q ss_pred EeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc
Q 038810 80 TLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 80 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~ 141 (164)
.++|+|+|||+|+|++|++++++.+++.|+..+.+.+.. .+||+++||........+
T Consensus 84 ~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 84 AVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEEE
Confidence 999999999999999999999999999998877776543 379999999998876655
No 44
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.77 E-value=2.3e-17 Score=100.17 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=96.2
Q ss_pred EEeccCcccHHHHHHHHHhcCCCC----CChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCc
Q 038810 10 SLDGVRDKNLMQLKKLNIALFPVR----YNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLA 85 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~ 85 (164)
.+|.++.+|.+.|.++........ -+.+.+...+. .++++..+|.+||++.+.+....+ .+.+..++|+|
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~---dF~i~E~~g~viGC~aL~~~~~~~---~gE~~~laV~p 75 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEID---DFTIIERDGKVIGCAALHPVLEED---LGELRSLAVHP 75 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHh---hheeeeeCCcEEEEEeecccCccC---eeeEEEEEECH
Confidence 589999999999999998764422 22333333333 367778899999999999633332 88999999999
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 86 PYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 86 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
++||+|+|..|+..++..|++.|++++++.+. .+..||+++||.....
T Consensus 76 d~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 76 DYRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred HhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 99999999999999999999999999998874 4678999999998876
No 45
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.76 E-value=3.4e-17 Score=91.51 Aligned_cols=77 Identities=38% Similarity=0.527 Sum_probs=64.6
Q ss_pred ceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHH
Q 038810 47 EFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINF 126 (164)
Q Consensus 47 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~ 126 (164)
..++++.+++++||++.+....+ ..+|..++|+|++||+|+|+.|++.+.+.+.. ..+.+.+ ++.+.+|
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-----~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~f 71 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-----FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIKF 71 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-----EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-----EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHHH
Confidence 46788889999999999965554 78999999999999999999999999888854 4566665 4589999
Q ss_pred HHHcCCeE
Q 038810 127 YKKFGFDI 134 (164)
Q Consensus 127 ~~~~GF~~ 134 (164)
|+++||++
T Consensus 72 Y~~~GF~~ 79 (79)
T PF13508_consen 72 YEKLGFEE 79 (79)
T ss_dssp HHHTTEEE
T ss_pred HHHCcCCC
Confidence 99999985
No 46
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.75 E-value=3.4e-17 Score=112.93 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=94.8
Q ss_pred eccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 12 DGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 12 r~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
.+++++|++++.++...+.. .+|+.+........ ....+++.+++++||++.+...... ..++..++|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~~l~V~ 79 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGT----DPAMAELVVH 79 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCC----cceEEEEEEC
Confidence 36889999999999885543 45666655443221 3456778888999999988765432 3468889999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~ 141 (164)
|+|||+|||++|++.+++.+. ..+.+.+...|.++++||+++||+.......+
T Consensus 80 p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~~ 132 (292)
T TIGR03448 80 PAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRELLQM 132 (292)
T ss_pred HhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEEEEE
Confidence 999999999999999998764 35677888899999999999999988776554
No 47
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.75 E-value=3.6e-16 Score=96.79 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=88.1
Q ss_pred EEEeccCcccHHHHHHHHHhcC-------CCC-CChhHHHHHhh----c----CceEEEEEeC--CcEEEEEEeEeeecC
Q 038810 9 ISLDGVRDKNLMQLKKLNIALF-------PVR-YNDKYYSDALA----S----GEFTKLAYYS--DICVGAIACRLEKKE 70 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~-------~~~-~~~~~~~~~~~----~----~~~~~~~~~~--~~~vG~~~~~~~~~~ 70 (164)
++||+++++|++.+.++..+.. ... .+......++. . +...|++.++ +++||++.+......
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 7899999999999999885221 111 13222222222 1 2345666654 469999999544322
Q ss_pred CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHH-hcCCcEEEEEEecCChHHHHHHHHcCCe
Q 038810 71 GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCA-KQNISEVYLHVQTNNEDAINFYKKFGFD 133 (164)
Q Consensus 71 ~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~~~~~GF~ 133 (164)
.. .+.++ +.|.|++||+|+|+.++..++++++ +.|+..+.+.+.++|.+|+++++|+||+
T Consensus 82 ~~--~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NN--WAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TT--EEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CC--ccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 21 66664 8899999999999999999999995 5699999999999999999999999996
No 48
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.75 E-value=3.4e-17 Score=122.52 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=94.1
Q ss_pred eEEEeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeee
Q 038810 8 AISLDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGV 83 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v 83 (164)
.++||+++++|++.+.++...... .++... ........++++.+++++||++.+...... .++|..++|
T Consensus 463 gm~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~---~l~~~~~~~~Va~~~g~IVG~~~l~~~~~~----~~~I~~i~V 535 (614)
T PRK12308 463 GVKVRPARLTDIDAIEGMVAYWAGLGENLPRSRN---ELVRDIGSFAVAEHHGEVTGCASLYIYDSG----LAEIRSLGV 535 (614)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHhhhcccccCHH---HHhcccCcEEEEEECCEEEEEEEEEEcCCC----eEEEEEEEE
Confidence 378999999999999999875432 122222 222233456778889999999988764322 578999999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
+|+|||+|||+.|++++++++++.|+..+.+.+ .+..||+|+||+..+...
T Consensus 536 ~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~~ 586 (614)
T PRK12308 536 EAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKSL 586 (614)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCccc
Confidence 999999999999999999999999999888764 246899999999888654
No 49
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.72 E-value=3.8e-16 Score=91.94 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=98.5
Q ss_pred eEEEeccCcccHHH-HHHHHHhcCC-CCCChhHHHHHhhc----Cc-eEEEEEeC---CcEEEEEEeEeeecC--CCeeE
Q 038810 8 AISLDGVRDKNLMQ-LKKLNIALFP-VRYNDKYYSDALAS----GE-FTKLAYYS---DICVGAIACRLEKKE--GGAIC 75 (164)
Q Consensus 8 ~~~ir~~~~~d~~~-i~~l~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~---~~~vG~~~~~~~~~~--~~~~~ 75 (164)
.+.+|++..+|+.. +.++..+.-. ..-+++.|...+.. .. +..++.+| +++||.+.+.....- ..+..
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~r 85 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSR 85 (150)
T ss_pred ceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccccc
Confidence 38999999999986 7777665543 44456666555543 33 44444333 789999988766432 33447
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
.+|..+.|++++||+++|+.|+..+...+++.|+-.+.+.+.+.| ..||+|+||...+.
T Consensus 86 GhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 86 GHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAGN 144 (150)
T ss_pred CceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccch
Confidence 789999999999999999999999999999999999999999965 68999999987763
No 50
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=94.31 Aligned_cols=123 Identities=24% Similarity=0.331 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHhcC-------CCCCChhHHHHHhhc-CceEEEEEeCC-cEEEEEEeEeeecCCCeeEEEEEEeeeCccc
Q 038810 17 KNLMQLKKLNIALF-------PVRYNDKYYSDALAS-GEFTKLAYYSD-ICVGAIACRLEKKEGGAICVYIMTLGVLAPY 87 (164)
Q Consensus 17 ~d~~~i~~l~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~ 87 (164)
++++...+|..... +..|.+..-.+.+.. ...++++++++ ++|||+++....+. +.+++++..+-|.++|
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~-g~~vlYcyEvqv~~~y 132 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDT-GDPVLYCYEVQVASAY 132 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEccc-CCeEEEEEEEeehhhh
Confidence 55666677765432 244666544444544 45667777766 89999998877654 4569999999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
||+|||+.|++.+...+.......|.++|...|.+|+.||.++||......+.
T Consensus 133 R~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~sp~ 185 (202)
T KOG2488|consen 133 RGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEESPC 185 (202)
T ss_pred hccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCCCc
Confidence 99999999999999999888888999999999999999999999988876653
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.65 E-value=3.1e-15 Score=93.52 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=76.7
Q ss_pred EeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecC------CCeeEEEEEEeeeC
Q 038810 11 LDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKE------GGAICVYIMTLGVL 84 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~------~~~~~~~i~~~~v~ 84 (164)
+|+++.+|+.++.++....+. .+ ....++++++++++||++.+...... .....++|..++|+
T Consensus 20 ~~~~~~~dl~~l~~l~~~~f~-~~----------~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~ 88 (156)
T PRK13688 20 FREFGNQELSMLEELQANIIE-ND----------SESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVL 88 (156)
T ss_pred HHHhcHHHHHHHHhhhhhEee-cC----------CCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEEC
Confidence 466777777777777766652 11 23456778889999998877432210 11236789999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
|+|||+|+|++|++.+. +.++. + .+...| .+.+||+|+||+..+..
T Consensus 89 p~~rgkGiG~~Ll~~a~----~~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 89 PKYQNRGYGEMLVDFAK----SFQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred HHHcCCCHHHHHHHHHH----HhCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 99999999999998644 33433 2 334445 57899999999999876
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.63 E-value=1.1e-14 Score=82.28 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=52.0
Q ss_pred EEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 77 YIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 77 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
.|..+.|+|++||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 23 ~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 23 EIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 5889999999999999999999999999998765 67889999999999999999998854
No 53
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=7.6e-14 Score=89.98 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=103.8
Q ss_pred eEEEeccCcccHHHHHHHHHhc-----CCCC-----C-ChhHHHHHh----hc-Cce--EEEEEeC--CcEEEEEEeEee
Q 038810 8 AISLDGVRDKNLMQLKKLNIAL-----FPVR-----Y-NDKYYSDAL----AS-GEF--TKLAYYS--DICVGAIACRLE 67 (164)
Q Consensus 8 ~~~ir~~~~~d~~~i~~l~~~~-----~~~~-----~-~~~~~~~~~----~~-~~~--~~~~~~~--~~~vG~~~~~~~ 67 (164)
.+.+|++..+|+..+....... .... + ....+...+ .. +.. .+....+ +++||.+.+...
T Consensus 9 r~~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~ 88 (187)
T COG1670 9 RLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGLSDI 88 (187)
T ss_pred eeEeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEEEEe
Confidence 3667788888988877553211 1111 1 112222222 11 222 3333333 489999999876
Q ss_pred ecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecceecc-cccc
Q 038810 68 KKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY-YTNI 145 (164)
Q Consensus 68 ~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~-~~~~ 145 (164)
...... ......+.+.|++||+|+|+.++..+++++++. ++.++.+.+.+.|.+|+++++|+||+..+..+.. +..+
T Consensus 89 ~~~~~~-~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~~~g 167 (187)
T COG1670 89 DRAANG-DLAEIGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEFIKG 167 (187)
T ss_pred cccccc-ceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhhhceeeCC
Confidence 530000 233445667999999999999999999999884 9999999999999999999999999999998875 4444
Q ss_pred CCCceeEEeeecCC
Q 038810 146 TPPDCYVLTKFITQ 159 (164)
Q Consensus 146 ~~~~~~~~~k~l~~ 159 (164)
.+.|.+.+.....+
T Consensus 168 ~~~d~~~~~~~~~e 181 (187)
T COG1670 168 RWRDTVLYSLLRDE 181 (187)
T ss_pred eeeeEEEEEEechh
Confidence 56778887776654
No 54
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.60 E-value=2e-14 Score=94.42 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=77.0
Q ss_pred CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHH
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAIN 125 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 125 (164)
....+....||++|+.+........ ...|..++++|+|||||+|+.++..+.....+.|.. ..+.+...|+.|.+
T Consensus 176 ~~~~~f~~~d~~iVa~A~t~a~~~~----~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~-~~L~~~~~N~~A~~ 250 (268)
T COG3393 176 RSRTYFLEGDGKIVAKAETAAENPA----YAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKI-PCLFVNSDNPVARR 250 (268)
T ss_pred ceeEEEEccCCcEEEeeeccccCCc----ceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCe-eEEEEecCCHHHHH
Confidence 3455666667799999887766655 889999999999999999999999999999888854 55777799999999
Q ss_pred HHHHcCCeEecceecc
Q 038810 126 FYKKFGFDITDTIKNY 141 (164)
Q Consensus 126 ~~~~~GF~~~~~~~~~ 141 (164)
.|+|.||+..+++..+
T Consensus 251 iY~riGF~~~g~~~~~ 266 (268)
T COG3393 251 IYQRIGFREIGEFREY 266 (268)
T ss_pred HHHHhCCeecceEEEE
Confidence 9999999999987643
No 55
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.58 E-value=3.1e-14 Score=97.43 Aligned_cols=78 Identities=13% Similarity=0.274 Sum_probs=66.0
Q ss_pred EEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHH
Q 038810 49 TKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYK 128 (164)
Q Consensus 49 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~ 128 (164)
+++..+++++||++.+.. ..+..++|+|+|||+|+|++|++.+++++++.|+..+.+.+... +..||+
T Consensus 8 ~~v~~~~~~iVG~~~l~~---------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYe 75 (297)
T cd02169 8 VGIFDDAGELIATGSIAG---------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFR 75 (297)
T ss_pred EEEEEECCEEEEEEEecc---------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHH
Confidence 344456799999987742 14889999999999999999999999999999999999998764 468999
Q ss_pred HcCCeEecce
Q 038810 129 KFGFDITDTI 138 (164)
Q Consensus 129 ~~GF~~~~~~ 138 (164)
|+||+..+..
T Consensus 76 k~GF~~~~~~ 85 (297)
T cd02169 76 GLGFKELANA 85 (297)
T ss_pred HCCCEEeccc
Confidence 9999998833
No 56
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.53 E-value=2.6e-13 Score=83.64 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=97.1
Q ss_pred EEEeccCcccHHHHHHHHHhcCC-----------CCCChhHHHHHhhc---------------CceEEEEE-eCCcEEEE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP-----------VRYNDKYYSDALAS---------------GEFTKLAY-YSDICVGA 61 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~-----------~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~vG~ 61 (164)
+.++..+..+.+++.++..+... ..++...|..++.. ....++++ .|+++||+
T Consensus 4 ~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~ 83 (174)
T COG3981 4 MKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGF 83 (174)
T ss_pred ccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEE
Confidence 66788889999999988765432 11111233333322 12344444 46999999
Q ss_pred EEeEeeecCCCee-EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 62 IACRLEKKEGGAI-CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 62 ~~~~~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
+.+...-+..-.. ..+| +..|.|+.||||+|+++++.+++.|++.|++.+.++|..+|.+|.+.-+++|=....++..
T Consensus 84 i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~~~ 162 (174)
T COG3981 84 INLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEFFG 162 (174)
T ss_pred EEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEEcc
Confidence 9998776552111 2234 5679999999999999999999999999999999999999999999999999888877653
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.52 E-value=4.1e-13 Score=93.31 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=70.5
Q ss_pred ceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHH
Q 038810 47 EFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINF 126 (164)
Q Consensus 47 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~ 126 (164)
...+++.++|++||++.+.. + .+..++|+|+|||+|+|++|+..+++.+++.|+..+.+.+.+.| .+|
T Consensus 31 d~~vv~~~~~~lVg~g~l~g--~-------~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~f 98 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGIAG--N-------VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AAL 98 (332)
T ss_pred CEEEEEEECCEEEEEEEEec--C-------EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHH
Confidence 46777888999999998742 1 37799999999999999999999999999999999999987644 579
Q ss_pred HHHcCCeEeccee
Q 038810 127 YKKFGFDITDTIK 139 (164)
Q Consensus 127 ~~~~GF~~~~~~~ 139 (164)
|+++||.......
T Consensus 99 y~klGF~~i~~~~ 111 (332)
T TIGR00124 99 FEYCGFKTLAEAK 111 (332)
T ss_pred HHHcCCEEeeeec
Confidence 9999999998765
No 58
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.48 E-value=2.2e-13 Score=81.49 Aligned_cols=136 Identities=22% Similarity=0.258 Sum_probs=91.9
Q ss_pred eccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhcCceEEEEEe-CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcc
Q 038810 12 DGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALASGEFTKLAYY-SDICVGAIACRLEKKEGGAICVYIMTLGVLAP 86 (164)
Q Consensus 12 r~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~ 86 (164)
..++...+-++..+..+.|. -+|++-.=..... ...++..+. +|+++|++.+.+...... .+.|+.+.|+|+
T Consensus 11 ~~Lt~~ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~-~~~Hl~~~~~~g~LvAyaRLl~~~~~~~--~~~iGRV~v~~~ 87 (155)
T COG2153 11 NDLTVRELYELLKLRVDVFVVEQNCPYPELDGKDLLG-DTRHLLGWTPDGELVAYARLLPPGAEYE--EVSIGRVIVSPA 87 (155)
T ss_pred hhcCHHHHHHHHHhheeEEEEecCCCCcCcCCccccc-ccceEEEEcCCCeEEEEEecCCCCCCcC--ceeeeeEEECHh
Confidence 34445555555555556664 2333211111112 334555555 999999999998876644 377999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcC-CcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeec
Q 038810 87 YRGLGIGTKLLNHVLDLCAKQN-ISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFI 157 (164)
Q Consensus 87 ~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l 157 (164)
+||+|+|.+||..+++.+.+.. -..+.+..-. ..+.||.+.||...+.. |..++ ...+-|.+..
T Consensus 88 ~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQa---hLq~fYa~~GFv~~~e~--yledG--IpHv~M~r~~ 152 (155)
T COG2153 88 ARGQGLGQQLMEKALETAGREWPDKPVYLGAQA---HLQDFYASFGFVRVGEE--YLEDG--IPHVGMIREV 152 (155)
T ss_pred hhccchhHHHHHHHHHHHHhhCCCCCeEEehHH---HHHHHHHHhCcEEcCch--hhcCC--CCchhhhhcc
Confidence 9999999999999999998873 3445555544 78999999999999854 33333 3455555544
No 59
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.45 E-value=2.2e-12 Score=86.61 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=68.0
Q ss_pred CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHH
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAIN 125 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 125 (164)
....+++..+|++|+.+........ .+.| .+.++|+|||||+|+.+...++.+|.++|..-. ..+ .|.+|++
T Consensus 164 ~G~Gf~i~~~~~iVs~~~s~~~~~~----~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~-WDc--~N~~S~~ 235 (265)
T PF12746_consen 164 NGFGFCILHDGEIVSGCSSYFVYEN----GIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPS-WDC--HNLASIA 235 (265)
T ss_dssp H--EEEEEETTEEEEEEEEEEEETT----EEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHH
T ss_pred cCcEEEEEECCEEEEEEEEEEEECC----EEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcC-eeC--CCHHHHH
Confidence 3478888899999887766655553 4444 788999999999999999999999999986543 333 5999999
Q ss_pred HHHHcCCeEecceeccccccC
Q 038810 126 FYKKFGFDITDTIKNYYTNIT 146 (164)
Q Consensus 126 ~~~~~GF~~~~~~~~~~~~~~ 146 (164)
+.+|+||+.......|+.+..
T Consensus 236 lA~kLGf~~~~~Y~~Y~v~~~ 256 (265)
T PF12746_consen 236 LAEKLGFHFDFEYTAYEVNNS 256 (265)
T ss_dssp HHHHCT--EEEEEEEE-----
T ss_pred HHHHcCCcccceeeeeeeccc
Confidence 999999999999998865543
No 60
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.42 E-value=2.3e-11 Score=77.94 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=77.4
Q ss_pred ChhHHHHHhhcC-ceEEEEEeCC--cEEEEEEeEeeecC---------------------------------CCeeEEEE
Q 038810 35 NDKYYSDALASG-EFTKLAYYSD--ICVGAIACRLEKKE---------------------------------GGAICVYI 78 (164)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~--~~vG~~~~~~~~~~---------------------------------~~~~~~~i 78 (164)
+++.+....+.+ ...|++..++ +++|.+.+.....- .....+.|
T Consensus 14 sPnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RI 93 (196)
T PF13718_consen 14 SPNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARI 93 (196)
T ss_dssp -HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEE
T ss_pred CHHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeE
Confidence 467777777775 4567777788 99999988766532 12347899
Q ss_pred EEeeeCcccccCChHHHHHHHHHHHH-------------------------HhcCCcEEEEEEecCChHHHHHHHHcCCe
Q 038810 79 MTLGVLAPYRGLGIGTKLLNHVLDLC-------------------------AKQNISEVYLHVQTNNEDAINFYKKFGFD 133 (164)
Q Consensus 79 ~~~~v~~~~rg~Gig~~l~~~~~~~~-------------------------~~~~~~~i~~~~~~~n~~~~~~~~~~GF~ 133 (164)
..|+|+|++|++|+|+++++.+++++ ...+++.+...-.. .+...+||+|+||.
T Consensus 94 vRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~-t~~Ll~FW~k~gf~ 172 (196)
T PF13718_consen 94 VRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGA-TPELLKFWQKNGFV 172 (196)
T ss_dssp EEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHHHCTT-E
T ss_pred EEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCC-CHHHHHHHHHCCcE
Confidence 99999999999999999999999999 35678876554333 45889999999999
Q ss_pred EecceeccccccCCCceeEEeeec
Q 038810 134 ITDTIKNYYTNITPPDCYVLTKFI 157 (164)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~k~l 157 (164)
++.....--. -....-.+|.|.|
T Consensus 173 pv~l~~~~n~-~SGe~S~imlr~l 195 (196)
T PF13718_consen 173 PVYLGQTRNE-ASGEHSAIMLRPL 195 (196)
T ss_dssp EEEE-SS--T-TT---EEEEEEE-
T ss_pred EEEEecCccc-ccCceeeeEEeec
Confidence 9876654311 1134567777765
No 61
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.39 E-value=4.8e-12 Score=77.98 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=73.7
Q ss_pred eEEEEEe--CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHH
Q 038810 48 FTKLAYY--SDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAIN 125 (164)
Q Consensus 48 ~~~~~~~--~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 125 (164)
..+++.. ..++||.+.+....+... .+++..+.|+.+.||+|+|+.|++.++.+++..|++.+++.+... .+
T Consensus 56 ~sL~Ll~E~~~~VigH~rLS~i~n~~~--al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ----~~ 129 (225)
T KOG3397|consen 56 MSLLLLNEENDEVLGHSRLSHLPNRDH--ALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ----CR 129 (225)
T ss_pred eeeeeecccccceeeeeccccCCCCCc--eeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc----hh
Confidence 3444433 468999998887766543 788999999999999999999999999999999999999998874 47
Q ss_pred HHHHcCCeEecceecc
Q 038810 126 FYKKFGFDITDTIKNY 141 (164)
Q Consensus 126 ~~~~~GF~~~~~~~~~ 141 (164)
||+++||+....+..+
T Consensus 130 FYe~lGYe~c~Pi~~~ 145 (225)
T KOG3397|consen 130 FYESLGYEKCDPIVHS 145 (225)
T ss_pred hhhhhcccccCceecc
Confidence 9999999988877654
No 62
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=99.33 E-value=7.6e-11 Score=69.68 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=72.7
Q ss_pred EEEecc---CcccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCc
Q 038810 9 ISLDGV---RDKNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLA 85 (164)
Q Consensus 9 ~~ir~~---~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~ 85 (164)
++|.++ ++.|..++..++ +..+.+.+...+......|++.-|++++|.+.+..... .+.+..++|++
T Consensus 2 LTI~rl~~ls~Qd~iDL~KIw-----p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~~~~-----~~~L~~l~VRe 71 (128)
T PF12568_consen 2 LTIERLTTLSEQDRIDLAKIW-----PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTISGQ-----QAELSDLCVRE 71 (128)
T ss_dssp -EEEE-SS--HHHHHHHHHH------TTS----------SSEEEEEEEETTEEEEEEEEEEETT-----EEEEEEEEE-T
T ss_pred eEEEEcCCCCHHHHHHHHHhC-----CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEEcCc-----ceEEeeEEEee
Confidence 344444 445555555555 34455666777788888999999999999999998765 78999999999
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCcEEEEEEec----CChHHHHHHHHcCCeEec
Q 038810 86 PYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT----NNEDAINFYKKFGFDITD 136 (164)
Q Consensus 86 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~----~n~~~~~~~~~~GF~~~~ 136 (164)
--|++|+|..|++.+...+. ++....+.... +-.....|.+.+||....
T Consensus 72 vTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 72 VTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp T-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred ccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 99999999999999998874 45555554432 234677999999996543
No 63
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.29 E-value=1.9e-12 Score=78.17 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=95.0
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCCCCCCh--hHHHHHhhc-CceEEEE---------EeCCcEEEEEEeEeeecC----
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFPVRYND--KYYSDALAS-GEFTKLA---------YYSDICVGAIACRLEKKE---- 70 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~~~~~~--~~~~~~~~~-~~~~~~~---------~~~~~~vG~~~~~~~~~~---- 70 (164)
..+.|||..+++.+.+..+....||+.... +.+...+.+ +..+..+ ...+.+||++.....+..
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~lt~ 89 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERLTQ 89 (190)
T ss_pred ccccCCCCChHHHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhhhH
Confidence 457899999999999999988888754433 233333333 2222222 235789999887766544
Q ss_pred -------CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 71 -------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 71 -------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
.++....|..++|+|+||.+|+|+.|+...++..-.+ -.+++.+.+.. +.+.||+++||..++.-.
T Consensus 90 ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~---pLvPFYEr~gFk~vgp~~ 163 (190)
T KOG4144|consen 90 ESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHD---PLVPFYERFGFKAVGPCA 163 (190)
T ss_pred HHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecC---CccchhHhcCceeecccc
Confidence 2334689999999999999999999998866666444 45677777776 889999999999998744
No 64
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.29 E-value=6.3e-11 Score=86.91 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=69.8
Q ss_pred CceEEEEEe---CCcEEEEEEeEeeecCC----CeeEEEEEEee-----------eCcccccCChHHHHHHHHHHHHHhc
Q 038810 46 GEFTKLAYY---SDICVGAIACRLEKKEG----GAICVYIMTLG-----------VLAPYRGLGIGTKLLNHVLDLCAKQ 107 (164)
Q Consensus 46 ~~~~~~~~~---~~~~vG~~~~~~~~~~~----~~~~~~i~~~~-----------v~~~~rg~Gig~~l~~~~~~~~~~~ 107 (164)
+...|+.+. ++.+||++.+....... ....+.|..+. ++++|||+|+|++|++++++.+++.
T Consensus 410 G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~ 489 (522)
T TIGR01211 410 GTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE 489 (522)
T ss_pred CCeEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC
Confidence 445677666 46899999998775421 11144455554 3589999999999999999999999
Q ss_pred CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 108 NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
|+..+.+.+ |..+++||+|+||...+...
T Consensus 490 G~~~i~v~s---~~~A~~FY~klGf~~~g~ym 518 (522)
T TIGR01211 490 GSEKILVIS---GIGVREYYRKLGYELDGPYM 518 (522)
T ss_pred CCCEEEEee---CchHHHHHHHCCCEEEccee
Confidence 999988744 66999999999999887653
No 65
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.27 E-value=2.4e-11 Score=67.51 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=66.0
Q ss_pred eCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCe
Q 038810 54 YSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFD 133 (164)
Q Consensus 54 ~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~ 133 (164)
.+|.+|.++...... .+...++.|+|||||+.+.++....+.+.+.|+. ++..+.++|..++++.+++||.
T Consensus 6 peG~PVSW~lmdqtg--------e~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 6 PEGNPVSWSLMDQTG--------EMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCCEeEEEEecccc--------cccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCe
Confidence 468899987766444 4777889999999999999999999999999988 8899999999999999999998
Q ss_pred Eecc
Q 038810 134 ITDT 137 (164)
Q Consensus 134 ~~~~ 137 (164)
....
T Consensus 77 ~~pc 80 (89)
T PF08444_consen 77 FMPC 80 (89)
T ss_pred ecCC
Confidence 7653
No 66
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.23 E-value=1.5e-10 Score=61.21 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=53.5
Q ss_pred EEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEE
Q 038810 50 KLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYL 114 (164)
Q Consensus 50 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~ 114 (164)
+++..+++++|++.+.+.... ...+++..++|+|++||+|+|+.++..+.+++++.+++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~--~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSG--GDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCC--CccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 456678899999999887642 127889899999999999999999999999999988887765
No 67
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=99.19 E-value=2.6e-10 Score=67.17 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=97.2
Q ss_pred eeeEEEeccCcccHHHHHHHHHhcCC-CCCCh-hHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecC-----------CC
Q 038810 6 EVAISLDGVRDKNLMQLKKLNIALFP-VRYND-KYYSDALASGEFTKLAYYSDICVGAIACRLEKKE-----------GG 72 (164)
Q Consensus 6 ~~~~~ir~~~~~d~~~i~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-----------~~ 72 (164)
.|.+.++.+...|...+..+.++.-. ..|-+ +.+.....+ .|++..+|.+-|++.....+.. .-
T Consensus 5 smp~~~~D~~apd~aavLaLNNeha~elswLe~erL~~l~~e---AF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErY 81 (167)
T COG3818 5 SMPILIRDVRAPDLAAVLALNNEHALELSWLELERLYRLYKE---AFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERY 81 (167)
T ss_pred ccceehhhhcCCchhhHHhccchhhhhccccCHHHHHHHHHH---HHHHhhccchhhheeeccccccCCCCceeehhhhC
Confidence 35688888888899999998776432 33332 333333322 2566667776666654433322 11
Q ss_pred eeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEe--cCChHHHHHHHHcCCeEecceec
Q 038810 73 AICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQ--TNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 73 ~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~--~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
+...++..+.|....||+|+|+++.+.+.+++...|+..+.+.+. +.|+++-.|.-.+||.+++.-..
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~i 151 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATI 151 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEE
Confidence 237899999999999999999999999999999999998888665 57889999999999999997654
No 68
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.17 E-value=1.4e-09 Score=60.03 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=54.4
Q ss_pred EEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHH
Q 038810 50 KLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKK 129 (164)
Q Consensus 50 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 129 (164)
|-+..+|+.+|++.+...+. .+.+....|.|++||+|+|+.|++.++++++++|.. +.+..+-+.+++++
T Consensus 2 F~~~~~g~~~a~l~Y~~~~~-----~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-----v~p~C~y~~~~~~~ 71 (78)
T PF14542_consen 2 FELKDDGEEIAELTYREDGG-----VIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-----VVPTCSYVAKYFRR 71 (78)
T ss_dssp EEEESSTTEEEEEEEEESSS-----EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-----EEETSHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeCCC-----EEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-----EEEECHHHHHHHHh
Confidence 44566788999999866332 889999999999999999999999999999999855 33444566666665
Q ss_pred c
Q 038810 130 F 130 (164)
Q Consensus 130 ~ 130 (164)
.
T Consensus 72 h 72 (78)
T PF14542_consen 72 H 72 (78)
T ss_dssp -
T ss_pred C
Confidence 4
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=99.14 E-value=2.3e-09 Score=80.97 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=88.2
Q ss_pred ChhHHHHHhhcCc-eEEEEEeCC-cEEEEEEeEeeecC--------------------------------CCeeEEEEEE
Q 038810 35 NDKYYSDALASGE-FTKLAYYSD-ICVGAIACRLEKKE--------------------------------GGAICVYIMT 80 (164)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~~~~-~~vG~~~~~~~~~~--------------------------------~~~~~~~i~~ 80 (164)
++..+...++.+. ..+++..++ .+|+.+.+...... ..-..+.|..
T Consensus 457 sP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvR 536 (758)
T COG1444 457 SPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVR 536 (758)
T ss_pred CHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEE
Confidence 4566777777654 456666565 77777776544322 1123788999
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCCC
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQP 160 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~~ 160 (164)
|+|+|++|++|||+++++.+.++++ .+++.+...- -.++...+||.|+||.+++.....-... .....+|.|.|+..
T Consensus 537 IAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsF-G~t~~L~rFW~rnGF~pVhls~~rn~~S-Geys~i~lkpLs~~ 613 (758)
T COG1444 537 IAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSF-GYTEELLRFWLRNGFVPVHLSPTRNASS-GEYTAIVLKPLSDA 613 (758)
T ss_pred EEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeecc-CCCHHHHHHHHHcCeEEEEecCccCcCC-CceeEEEEecCCHH
Confidence 9999999999999999999999997 4677665443 3446899999999999998776542222 35677888887653
No 70
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.5e-08 Score=59.16 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=90.5
Q ss_pred EEEeccCcccHHHHHHHHHhcC------CCCCC--hhH--HHHHhhc-CceEEEEEeC----------CcEEEEEEeEee
Q 038810 9 ISLDGVRDKNLMQLKKLNIALF------PVRYN--DKY--YSDALAS-GEFTKLAYYS----------DICVGAIACRLE 67 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~------~~~~~--~~~--~~~~~~~-~~~~~~~~~~----------~~~vG~~~~~~~ 67 (164)
+.+.|.++.+.+....+....- ..+.+ +++ -..+-.+ +...|++.+. ...||-+-+...
T Consensus 14 vILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt 93 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLT 93 (185)
T ss_pred EEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEe
Confidence 6788999999988887754211 12221 111 1112222 4455655531 236776666655
Q ss_pred ecCCC------eeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 68 KKEGG------AICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 68 ~~~~~------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
..+.. ...+.+.-+.-.|..||||+|+..+..++.++... ++....+.+..+|.+++++|+|++|......
T Consensus 94 ~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 94 TSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred cCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 54421 23566666777899999999999999999999776 8888999999999999999999999988763
No 71
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=4.6e-08 Score=63.15 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=104.1
Q ss_pred eeEEEecc-CcccHHHHHHHHHhcCCC----CCChhHHHHHhhcCceEEEEEeCC-cEEEEEEeEeeecCCCeeEEEEEE
Q 038810 7 VAISLDGV-RDKNLMQLKKLNIALFPV----RYNDKYYSDALASGEFTKLAYYSD-ICVGAIACRLEKKEGGAICVYIMT 80 (164)
Q Consensus 7 ~~~~ir~~-~~~d~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~~~~~~~~~~~i~~ 80 (164)
|.+.+|.+ .+.+++++.++....|.. ......+......+..++.++.++ ++||.+...+ ....+....+-+.
T Consensus 1 m~vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~p-g~r~g~~y~ySH~ 79 (266)
T COG3375 1 MKVVVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYP-GGRGGSLYLYSHM 79 (266)
T ss_pred CceeEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccC-CcCCCceeeeeee
Confidence 34677777 566788888888877763 333455565555577888898864 9999987777 3323333667788
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHH-HHHcCCeEecceeccccc
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINF-YKKFGFDITDTIKNYYTN 144 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~-~~~~GF~~~~~~~~~~~~ 144 (164)
++|.|++|+.|+|-+|-..--+.+.++|+..+..+..+-|+--..| ..|+|-...-..++||..
T Consensus 80 ~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~ 144 (266)
T COG3375 80 LGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGE 144 (266)
T ss_pred hhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccch
Confidence 9999999999999999999999999999999888888877644444 668898888778888764
No 72
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.85 E-value=1.6e-07 Score=63.11 Aligned_cols=114 Identities=13% Similarity=0.267 Sum_probs=83.4
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCChhHHHHHhhcC-ceEEEEEe-CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcc
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDALASG-EFTKLAYY-SDICVGAIACRLEKKEGGAICVYIMTLGVLAP 86 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~ 86 (164)
+.+..+.+.|...+..+..-....... ++.. +...+++. ++++|++.++.-. .|..++|++.
T Consensus 4 ~~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaGn---------vikcvAvs~s 67 (352)
T COG3053 4 YTFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAGN---------VIKCVAVSES 67 (352)
T ss_pred eEEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEecccccc---------eeEEEEechh
Confidence 556677777776666554432222111 1222 23344444 4899998776532 3778999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc
Q 038810 87 YRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 87 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~ 141 (164)
+||-|++-+|+.++++.+.++|...+.+.+-+ ...++|+.+||..+....++
T Consensus 68 ~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp---~~~~lFk~~GF~~i~~~~~~ 119 (352)
T COG3053 68 LQGEGLALKLVTELINLAYERGRTHLFIYTKP---EYAALFKQCGFSEIASAENV 119 (352)
T ss_pred cccccHHHHHHHHHHHHHHHcCCceEEEEech---hHHHHHHhCCceEeeccCce
Confidence 99999999999999999999999999999887 67899999999998877643
No 73
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.84 E-value=2.3e-08 Score=68.79 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=73.2
Q ss_pred CceEEEEEeCCcEEEEEEeEeeec---CCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChH
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKK---EGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNED 122 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~---~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~ 122 (164)
....++...+.++++.+...+..- ....+...|..+++.|.|||+|..++|+.+.++...+.|+....++ +.
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-----P~ 112 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-----PF 112 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-----cC
Confidence 446788889999988776654432 2223477899999999999999999999999999999999877776 36
Q ss_pred HHHHHHHcCCeEecceec
Q 038810 123 AINFYKKFGFDITDTIKN 140 (164)
Q Consensus 123 ~~~~~~~~GF~~~~~~~~ 140 (164)
+.++|+|.||...+....
T Consensus 113 s~~iYrKfGye~asn~~~ 130 (389)
T COG4552 113 SGGIYRKFGYEYASNYHE 130 (389)
T ss_pred chhhHhhccccccceEEE
Confidence 789999999998887553
No 74
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.80 E-value=4.9e-08 Score=55.83 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=55.6
Q ss_pred CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEE
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLH 115 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 115 (164)
....+++.++|..+|.+.....+.. ...|....|.+.+||||+|+.|+..+++.+++.|...+-++
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~----~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~C 79 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGEN----LIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLC 79 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCC----EEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccc
Confidence 4567778888999999888877755 78899999999999999999999999999999987544333
No 75
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.69 E-value=3e-07 Score=53.59 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=64.7
Q ss_pred ceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHH
Q 038810 47 EFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINF 126 (164)
Q Consensus 47 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~ 126 (164)
...+....+|.+||++.+-............+..+.+...|||+|+|++..+++....+. ...+.+..+|.+|++|
T Consensus 37 ~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g----~w~Va~i~EN~PA~~f 112 (143)
T COG5628 37 REAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG----VWQVATVRENTPARAF 112 (143)
T ss_pred cceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc----eEEEEEeccCChhHHH
Confidence 345667779999999987655544333356688899999999999999999888776653 3456677889999999
Q ss_pred HHHcCCeE
Q 038810 127 YKKFGFDI 134 (164)
Q Consensus 127 ~~~~GF~~ 134 (164)
|++.-...
T Consensus 113 wK~~~~t~ 120 (143)
T COG5628 113 WKRVAETY 120 (143)
T ss_pred HHhhhccc
Confidence 99976543
No 76
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.64 E-value=5e-07 Score=64.89 Aligned_cols=127 Identities=15% Similarity=0.263 Sum_probs=102.4
Q ss_pred eeeEEEeccCcccHHHHHHHHHhcCC-----CCCChhHHHHHhhcCceEEEEE--e----CCcEEEEEEeEeeecCCCee
Q 038810 6 EVAISLDGVRDKNLMQLKKLNIALFP-----VRYNDKYYSDALASGEFTKLAY--Y----SDICVGAIACRLEKKEGGAI 74 (164)
Q Consensus 6 ~~~~~ir~~~~~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~----~~~~vG~~~~~~~~~~~~~~ 74 (164)
.|.+++++..+.+++.+.++.+..-+ ..+.++..+..........+.+ . |+.+||++.+...+.
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~~----- 485 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKES----- 485 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecCC-----
Confidence 47799999999999999999886544 4566677777666554433332 1 467999988887775
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEe--cCChHHHHHHHHcCCeEecc
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQ--TNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~--~~n~~~~~~~~~~GF~~~~~ 137 (164)
.+.|..+..+-..-|+++-.+|+..+++.|...|+..+...-. ..|.+.-.||+++||...++
T Consensus 486 ~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 486 EWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred eEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 7889889899999999999999999999999999999988655 47889999999999995553
No 77
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.54 E-value=2.2e-06 Score=55.14 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=86.4
Q ss_pred cCcccHHHHHHHHHhcCCC--CCChhH-----HHHHhhcCceEEEEEeCCcEEEEEEeEeeecC----------------
Q 038810 14 VRDKNLMQLKKLNIALFPV--RYNDKY-----YSDALASGEFTKLAYYSDICVGAIACRLEKKE---------------- 70 (164)
Q Consensus 14 ~~~~d~~~i~~l~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---------------- 70 (164)
++.++++++..+..+.|.+ .|.... +.++-.....++++.++|+++|++.+.+...+
T Consensus 5 ~~~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~ 84 (182)
T PF00765_consen 5 LSRRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPA 84 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS--
T ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCC
Confidence 4566778888888888863 455321 22222234556677788999999999887654
Q ss_pred -CCeeEEEEEEeeeCccccc------CChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 71 -GGAICVYIMTLGVLAPYRG------LGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 71 -~~~~~~~i~~~~v~~~~rg------~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
.....+++..++|+++.++ .-+...|+..+.+++.++|+..+...+.. ...+++.+.||.....-.
T Consensus 85 p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~---~~~r~l~r~G~~~~~lG~ 157 (182)
T PF00765_consen 85 PRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDP---AMERILRRAGWPVRRLGP 157 (182)
T ss_dssp -SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEH---HHHHHHHHCT-EEEESSE
T ss_pred CCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEECh---HHHHHHHHcCCceEECCC
Confidence 1234899999999998542 23667899999999999999999888776 899999999997765433
No 78
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=98.48 E-value=1.4e-05 Score=49.49 Aligned_cols=107 Identities=19% Similarity=0.127 Sum_probs=75.0
Q ss_pred EEEeccC---cccHHHHHHHHHhcCC--------CCCChhHHHHHhhcC----ceEEEEEe--CCcEEEEEEeEeeecC-
Q 038810 9 ISLDGVR---DKNLMQLKKLNIALFP--------VRYNDKYYSDALASG----EFTKLAYY--SDICVGAIACRLEKKE- 70 (164)
Q Consensus 9 ~~ir~~~---~~d~~~i~~l~~~~~~--------~~~~~~~~~~~~~~~----~~~~~~~~--~~~~vG~~~~~~~~~~- 70 (164)
++...++ +++++++..+.++.+. ..|+.+++...+..+ .+++++.. .+++|||++..+..-.
T Consensus 24 F~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv 103 (162)
T PF01233_consen 24 FEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRV 103 (162)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEE
Confidence 4444443 4556777788777764 457788888888774 34666654 5899999998877643
Q ss_pred --CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEE
Q 038810 71 --GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLH 115 (164)
Q Consensus 71 --~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 115 (164)
......+|..++|++++|.++++.-|++.+...+...|+-....+
T Consensus 104 ~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAvyT 150 (162)
T PF01233_consen 104 RDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAVYT 150 (162)
T ss_dssp TTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred eeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeeeee
Confidence 223478999999999999999999999999999998886544333
No 79
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.42 E-value=1.3e-05 Score=49.18 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=76.7
Q ss_pred EEEec-cCcccHHHHHHHHHhcCC-------CCCChhHHHHHhhc-----CceEEEEEeCCcEEEEEEeEeeecCCCeeE
Q 038810 9 ISLDG-VRDKNLMQLKKLNIALFP-------VRYNDKYYSDALAS-----GEFTKLAYYSDICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 9 ~~ir~-~~~~d~~~i~~l~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 75 (164)
++++. -+++|++.+.++....+. .+...+++...+.. ....+++..+|++||+........ .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~-----~ 94 (142)
T PF13480_consen 20 VRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGG-----T 94 (142)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECC-----E
Confidence 44443 367778888777654322 34455666666543 235667778999999987777665 6
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEE
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHV 116 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~ 116 (164)
++....+++|+++..++|..|+..+++++.+.|+..+.+..
T Consensus 95 ~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 95 LYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred EEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 77778888999999999999999999999999998777654
No 80
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=51.29 Aligned_cols=44 Identities=48% Similarity=0.712 Sum_probs=40.4
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCC
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGF 132 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF 132 (164)
++|+|++||+|+|+.|+..+++.+...|+. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 899999999999999999999999987755 66789999999999
No 81
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.23 E-value=4.4e-05 Score=53.44 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=68.0
Q ss_pred EEEeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhh---------------cCceEEEEEe--CCcEEEEEEeEee
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALA---------------SGEFTKLAYY--SDICVGAIACRLE 67 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~---------------~~~~~~~~~~--~~~~vG~~~~~~~ 67 (164)
+.|||++.+|++++.++....-+ -+-+.+.+...+. +..+.|++++ .|+++|++.+...
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred eEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 78999999999999999987644 1222222222111 1235677775 4899999987543
Q ss_pred ecC--------------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHH---hcCCcEE
Q 038810 68 KKE--------------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCA---KQNISEV 112 (164)
Q Consensus 68 ~~~--------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~---~~~~~~i 112 (164)
-.. .-.-+..+..++++|+||+-|.|+.|-+.-.-++. ++=.+++
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~v 161 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRV 161 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEE
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchhe
Confidence 211 01116789999999999999999988776554443 3323445
Q ss_pred EEEEec--CChHHHHHHHHcC
Q 038810 113 YLHVQT--NNEDAINFYKKFG 131 (164)
Q Consensus 113 ~~~~~~--~n~~~~~~~~~~G 131 (164)
...... +-...-.||+.+|
T Consensus 162 iAElrG~~De~G~SPFWdalG 182 (342)
T PF04958_consen 162 IAELRGVSDEDGRSPFWDALG 182 (342)
T ss_dssp EEE--B---TT---HHHHHTG
T ss_pred eeeccCCcCCCCCCchHHHhh
Confidence 443321 1123446777766
No 82
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.22 E-value=6e-05 Score=50.84 Aligned_cols=129 Identities=14% Similarity=0.200 Sum_probs=87.5
Q ss_pred EEEecc-CcccHHHHHHHHHhcCC--CCCCh------h-HHHHHhhcCceEEEEEe--CCcEEEEEEeEeeec-------
Q 038810 9 ISLDGV-RDKNLMQLKKLNIALFP--VRYND------K-YYSDALASGEFTKLAYY--SDICVGAIACRLEKK------- 69 (164)
Q Consensus 9 ~~ir~~-~~~d~~~i~~l~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~------- 69 (164)
++++.+ +.+++.++..+..+.|. ..|.. . .+.. .+....++++.+ +|++||++.+.+...
T Consensus 8 ~~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~-~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~ 86 (241)
T TIGR03694 8 FEIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDE-YDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPF 86 (241)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCC-CCCCCcEEEEEECCCCCEEEEEEEeccccccccccc
Confidence 455555 44557888888887775 23431 1 1111 223445566554 489999999987420
Q ss_pred ----C---------------CCeeEEEEEEeeeCcccccC--------C--------------------hHHHHHHHHHH
Q 038810 70 ----E---------------GGAICVYIMTLGVLAPYRGL--------G--------------------IGTKLLNHVLD 102 (164)
Q Consensus 70 ----~---------------~~~~~~~i~~~~v~~~~rg~--------G--------------------ig~~l~~~~~~ 102 (164)
. .....+++..++|++++|++ | +...|+..+.+
T Consensus 87 p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 166 (241)
T TIGR03694 87 PFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIA 166 (241)
T ss_pred cHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHH
Confidence 0 11348899999999999974 2 45679999999
Q ss_pred HHHhcCCcEEEEEEecCChHHHHHHHHcCCe--Eecceecc
Q 038810 103 LCAKQNISEVYLHVQTNNEDAINFYKKFGFD--ITDTIKNY 141 (164)
Q Consensus 103 ~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~--~~~~~~~~ 141 (164)
++...|+..++..+.+ ...+++.+.|+. ..|....|
T Consensus 167 ~a~~~Gi~~~~~v~~~---~l~r~l~r~G~~~~~lG~~~~~ 204 (241)
T TIGR03694 167 LSSANGITHWYAIMEP---RLARLLSRFGIQFRQVGPPVDY 204 (241)
T ss_pred HHHHCCCcEEEEEeCH---HHHHHHHHhCCceEEcCCCeeE
Confidence 9999999988887776 788899999974 44544433
No 83
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.21 E-value=0.00015 Score=46.33 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=73.0
Q ss_pred eccCcccHHHHHHHHHhcCCCCCChhHHHHHhhc---CceEEEEEeC--CcEEEEEEeEeeec---CCCeeEEEEEEeee
Q 038810 12 DGVRDKNLMQLKKLNIALFPVRYNDKYYSDALAS---GEFTKLAYYS--DICVGAIACRLEKK---EGGAICVYIMTLGV 83 (164)
Q Consensus 12 r~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~vG~~~~~~~~~---~~~~~~~~i~~~~v 83 (164)
...+.+.++++..+.-+. ...+..+.+..+... ....++++.. .++|+.+.+..... ....+..+++..++
T Consensus 8 ~NP~~e~~d~fmk~~g~~-r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~ 86 (181)
T PF06852_consen 8 INPPQEYFDQFMKLHGNE-RWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWI 86 (181)
T ss_pred eCCCHHHHHHHHHHhcCC-cccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeee
Confidence 334556677777776542 233444444444443 3344444443 56888877765432 12245889999999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
+|+|||+|+++.+-+.+.+.....+-. ..+. .+..+.++|.+ +||...+.
T Consensus 87 ~p~yRg~~~~kl~~~~~~~~~~~~~~N-~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 87 DPEYRGKGIMKLQDDICMDELDSVDDN-SVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CCcccCcchHHHHHHHHHHHhccCCCc-eeee---cCHHHHHHHHHHhCCCCCcc
Confidence 999999999964444444544443323 3333 33477778776 69888887
No 84
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.18 E-value=0.0001 Score=48.50 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=80.6
Q ss_pred cCcccHHHHHHHHHhcCCC--CCChhHH----HHHhhc-CceEEEEE-eCCcEEEEEEeEeeecC---------------
Q 038810 14 VRDKNLMQLKKLNIALFPV--RYNDKYY----SDALAS-GEFTKLAY-YSDICVGAIACRLEKKE--------------- 70 (164)
Q Consensus 14 ~~~~d~~~i~~l~~~~~~~--~~~~~~~----~~~~~~-~~~~~~~~-~~~~~vG~~~~~~~~~~--------------- 70 (164)
...++++++..+..+.|.. .|..... ...++. ...++++. ++|+++|++.+.+...+
T Consensus 13 ~~~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~ 92 (207)
T PRK13834 13 REASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGR 92 (207)
T ss_pred cCHHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCC
Confidence 3455677788888888763 3432111 011222 33344444 46799999998766432
Q ss_pred --CCeeEEEEEEeeeCcccccC---C----hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEe
Q 038810 71 --GGAICVYIMTLGVLAPYRGL---G----IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 71 --~~~~~~~i~~~~v~~~~rg~---G----ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~ 135 (164)
.....+++..++|+++++.. + +...|+..+.+++...|+..++..+.+ ...+.+.++||...
T Consensus 93 ~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r~G~~~~ 163 (207)
T PRK13834 93 LNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILARAGWPMQ 163 (207)
T ss_pred CCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHHcCCCeE
Confidence 12348999999999986322 2 556899999999999999988777766 78889999998654
No 85
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=98.14 E-value=0.00013 Score=51.57 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=90.7
Q ss_pred EEEeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhc---CceEEEEE-eCCcEEEEEEeEeeecCCCeeEEEEEE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALAS---GEFTKLAY-YSDICVGAIACRLEKKEGGAICVYIMT 80 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i~~ 80 (164)
++++. .+|++.+.++...... ...+.++++...+. ....+++. .+|++||.+.+....+ .++...
T Consensus 152 v~v~~--~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~-----~~~~~~ 224 (330)
T TIGR03019 152 LTVTV--DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRD-----EVLPYY 224 (330)
T ss_pred eEEEE--CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCC-----EEEEEe
Confidence 45554 3557888777664432 34667788776553 33455666 5889998876665544 333335
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecccc
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYT 143 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~ 143 (164)
.+.+++++..+-+..|.-.+++++.++|+....+.....+....+|=++.||+.....-.|+.
T Consensus 225 ~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~~ 287 (330)
T TIGR03019 225 AGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYLL 287 (330)
T ss_pred ccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEEc
Confidence 567899999999999999999999999999998876555556667777889999887765543
No 86
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.14 E-value=0.00011 Score=51.43 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=62.8
Q ss_pred EEEeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhh-------------cCceEEEEEe--CCcEEEEEEeEeeec
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALA-------------SGEFTKLAYY--SDICVGAIACRLEKK 69 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~~vG~~~~~~~~~ 69 (164)
+.|||+..+|++.+.++....=+ -+-+.+.+.+.+. ...+.|++++ .|++||++.+...-.
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 78999999999999999987643 2222333222221 1345677765 489999998765421
Q ss_pred C--------------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHH
Q 038810 70 E--------------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVL 101 (164)
Q Consensus 70 ~--------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~ 101 (164)
. .-.-...+..++++|+||+-|.|+.|-+.-.
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~Rf 145 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRF 145 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHH
Confidence 1 0111568999999999999999987765533
No 87
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.86 E-value=0.00058 Score=47.83 Aligned_cols=91 Identities=16% Similarity=0.054 Sum_probs=60.8
Q ss_pred EeccCcccHHHHHHHHHhcCC----CCCChhHHHHHhhc-------------CceEEEEEe--CCcEEEEEEeEeeecC-
Q 038810 11 LDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDALAS-------------GEFTKLAYY--SDICVGAIACRLEKKE- 70 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~~vG~~~~~~~~~~- 70 (164)
|||+...|++.+.++....=+ -+-+.+.+.+.+.. ..+.|++++ .|++||++.+...-..
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 799999999999999886643 22223332222211 345677765 4899999987654211
Q ss_pred -------------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHH
Q 038810 71 -------------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVL 101 (164)
Q Consensus 71 -------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~ 101 (164)
.-.-...+..++++|+||+-|.|+.|-+.-.
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~Rf 143 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRF 143 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHH
Confidence 0111678999999999999999977665533
No 88
>PHA00432 internal virion protein A
Probab=97.83 E-value=0.00039 Score=42.16 Aligned_cols=112 Identities=10% Similarity=0.072 Sum_probs=67.2
Q ss_pred EEeccCcccHHHHHHHHHhcCCCCCChhHHHHH-----hhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 10 SLDGVRDKNLMQLKKLNIALFPVRYNDKYYSDA-----LASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
.|+|++.+|+..+ .+..+ ....++.. +.....++.+..+|+++|.+. ..+.+++.+..-+|.
T Consensus 2 ~I~paT~~di~~~-~lr~~------D~~E~~a~g~~~~~~~s~~~~~~~~~G~~~aI~G------n~G~~vW~v~T~~v~ 68 (137)
T PHA00432 2 YIRQTTERDFDVF-NPSFE------DILEAKAYGIEPSFPPDSECVTLSLDGFVLAIGG------NQGDQVWFVTSDQVW 68 (137)
T ss_pred ccccccHHHHHHc-CCCHH------HHHHHHhcCCCCCCCCCceEEEEecCCeEEEEec------CCCCceEEEecHHhh
Confidence 4788888888776 22111 01111110 111445777888999988772 223335666555454
Q ss_pred c---ccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 85 A---PYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 85 ~---~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
. .+|. =..+.+....+...+ .++.++-.|...|..+++|.+.+||+....
T Consensus 69 ~~~~~~~r--eF~k~~~~~ld~ml~-~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 69 RLTKKEKR--EFRKLIMEYRDMMLD-QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hCChhhhH--HHHHHHHHHHHHHHH-hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 3 1221 123333344444333 378889999999999999999999999887
No 89
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.82 E-value=0.00075 Score=47.23 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=60.4
Q ss_pred EeccCcccHHHHHHHHHhcCC----CCCChhHHHHH-----------hh---cCceEEEEEe--CCcEEEEEEeEeeecC
Q 038810 11 LDGVRDKNLMQLKKLNIALFP----VRYNDKYYSDA-----------LA---SGEFTKLAYY--SDICVGAIACRLEKKE 70 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~-----------~~---~~~~~~~~~~--~~~~vG~~~~~~~~~~ 70 (164)
|||+...|++.+.++....=+ -+-+.+.+... .. ...+.|++++ .|+++|++.+...-..
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 799999999999999886643 12222222111 11 1345677765 4899999987654211
Q ss_pred --------------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHH
Q 038810 71 --------------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVL 101 (164)
Q Consensus 71 --------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~ 101 (164)
.-.-...+..++++|+||+-|.|+.|-+.-.
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~Rf 144 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARL 144 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHH
Confidence 0111678999999999999999987765533
No 90
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=0.0012 Score=42.93 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=86.3
Q ss_pred eccCcccHHHHHHHHHhcCC--CCCCh-----hHHHHHhhcCceEEEE-EeCCcEEEEEEeEeeecC-------------
Q 038810 12 DGVRDKNLMQLKKLNIALFP--VRYND-----KYYSDALASGEFTKLA-YYSDICVGAIACRLEKKE------------- 70 (164)
Q Consensus 12 r~~~~~d~~~i~~l~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~vG~~~~~~~~~~------------- 70 (164)
+...++-++++..+..+.|. -.|.. ..+..+-+.+..+.++ ..+|+++|++.+-+...+
T Consensus 10 ~~~~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~ 89 (209)
T COG3916 10 RELFPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEG 89 (209)
T ss_pred chhcHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcC
Confidence 44556667788888887776 23432 1222333334455666 568999999998776544
Q ss_pred ----CCeeEEEEEEeeeCc--ccccC---C-hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 71 ----GGAICVYIMTLGVLA--PYRGL---G-IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 71 ----~~~~~~~i~~~~v~~--~~rg~---G-ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
.....++...++|++ .-++. . ++..|+.-+++++..+|+..|...+.. ...+.+++.||.....-
T Consensus 90 ~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~---~meril~r~Gw~~~riG 164 (209)
T COG3916 90 GPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDT---GMERILRRAGWPLTRIG 164 (209)
T ss_pred CCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEch---HHHHHHHHcCCCeEEcC
Confidence 112378888998886 33333 2 356889999999999999999888877 89999999999766543
No 91
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.77 E-value=0.001 Score=46.55 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=60.5
Q ss_pred EeccCcccHHHHHHHHHhcCC----CCCChh-----------HHHHHhh--cCceEEEEEe--CCcEEEEEEeEeeecC-
Q 038810 11 LDGVRDKNLMQLKKLNIALFP----VRYNDK-----------YYSDALA--SGEFTKLAYY--SDICVGAIACRLEKKE- 70 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~----~~~~~~-----------~~~~~~~--~~~~~~~~~~--~~~~vG~~~~~~~~~~- 70 (164)
|||+..+|++.+.++....=+ -+-+.+ .+..... ...+.|++++ .|+++|++.+...-..
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 799999999999999886643 111222 2211111 1345667775 4899999987654211
Q ss_pred -------------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHHH
Q 038810 71 -------------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLD 102 (164)
Q Consensus 71 -------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~ 102 (164)
.-.-...+..++++|+||+-|.|+.|-+.-.-
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfL 144 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFL 144 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHH
Confidence 01116789999999999999999877665433
No 92
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.77 E-value=4.9e-05 Score=40.60 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=26.8
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHH
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLC 104 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 104 (164)
.+-|..++|+|.+|++|||+.|++.+....
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 567889999999999999999999988764
No 93
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.75 E-value=0.00017 Score=49.49 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCCC
Q 038810 91 GIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQP 160 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~~ 160 (164)
|-...++..+.+.|++.|+.+|.+.+.. ....+|++.||...+..+.||.+ .|++.|.+.++..
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~---~~~~~~~~~g~~~e~~i~~~f~g---~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPG---SDKPLFEERGYLEEAKIPGYFNG---HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccH---HHHHHHHHCCCeEEEecccccCC---CceEEEEEcCchH
Confidence 3478999999999999999999999988 55899999999999999999976 4899999999764
No 94
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.61 E-value=0.0017 Score=38.39 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=52.2
Q ss_pred eEEEEEeC-----CcEEEEEEeEeee-----cCCC----eeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEE
Q 038810 48 FTKLAYYS-----DICVGAIACRLEK-----KEGG----AICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVY 113 (164)
Q Consensus 48 ~~~~~~~~-----~~~vG~~~~~~~~-----~~~~----~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~ 113 (164)
..+++.+. +.++|++-+.... .... .+...+..++|++..|++|+|++|++.+++.- ++.--.
T Consensus 5 ~~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~~ 81 (120)
T PF05301_consen 5 VLYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPHQ 81 (120)
T ss_pred EEEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc---CCCccc
Confidence 45555552 4688888765432 1111 12346788999999999999999999988753 233334
Q ss_pred EEEecCChHHHHHHHHc
Q 038810 114 LHVQTNNEDAINFYKKF 130 (164)
Q Consensus 114 ~~~~~~n~~~~~~~~~~ 130 (164)
+.+....+...+|.+|.
T Consensus 82 ~a~DrPS~Kll~Fl~Kh 98 (120)
T PF05301_consen 82 LAIDRPSPKLLSFLKKH 98 (120)
T ss_pred ceecCCcHHHHHHHHHh
Confidence 45555555677777764
No 95
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.60 E-value=0.00087 Score=38.66 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred EEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCCh
Q 038810 49 TKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNE 121 (164)
Q Consensus 49 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~ 121 (164)
.+-+..++...|++.+.+... +....++..++|.+..||.|+|..++..+.+.. ..+...++++|+
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~--~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~ 75 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGV--NNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNP 75 (99)
T ss_pred ceEEEEeCCceEEEEEeccCC--CCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc
Confidence 445566777778777766542 112889999999999999999999999888763 467777777775
No 96
>PHA01733 hypothetical protein
Probab=97.55 E-value=0.00037 Score=42.91 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=73.7
Q ss_pred EEEeccCcccHHHHHH-HHH------hcCCCCCChhHHHHHhhcCceE-EEEEeCCcEEEEEEeEeeecCCCeeEEEEEE
Q 038810 9 ISLDGVRDKNLMQLKK-LNI------ALFPVRYNDKYYSDALASGEFT-KLAYYSDICVGAIACRLEKKEGGAICVYIMT 80 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~-l~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~ 80 (164)
-.|||.+.+|+..+.. +.. +.... ++..+...+.....+ +....+|+++|.++..++....-+..+.+..
T Consensus 3 ~~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T 80 (153)
T PHA01733 3 DNNRPATQADATEVAQNLRQEDREEIEGLGH--SPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCT 80 (153)
T ss_pred CccccccHHHHHHHHccCCHHHHHHHHHhCC--CcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEec
Confidence 3479999999866654 211 11112 222333334333333 6666689999998888743332222333333
Q ss_pred eeeCcccccCChHHHHHHHHHHHHH-hcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCA-KQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
-+|.. + -..+++....... ...+..++-.|...|..+++|.+.+||+.....+
T Consensus 81 ~~v~k-~-----~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~ 134 (153)
T PHA01733 81 PAIEK-N-----PIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQ 134 (153)
T ss_pred HHhHh-C-----CHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecccc
Confidence 33322 2 2334444444333 3468888889999999999999999999887654
No 97
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.53 E-value=0.011 Score=39.80 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=64.3
Q ss_pred ChhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcE
Q 038810 35 NDKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISE 111 (164)
Q Consensus 35 ~~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 111 (164)
+...+...+.. ....+-...+|++||++.+..-.+ .+.-...+-+|++-.+++|+..+-.-+++|++.|...
T Consensus 129 ~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d-----~lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y 203 (240)
T PRK01305 129 SRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDD-----GLSAVYTFYDPDEEHRSLGTFAILWQIELAKRLGLPY 203 (240)
T ss_pred CHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCC-----ceeeEEEeeCCCccccCCHHHHHHHHHHHHHHcCCCe
Confidence 34555555554 233444456899999988876655 3333345579999999999999999999999999999
Q ss_pred EEEEEecCChHHHHHHHHcCCeEecc
Q 038810 112 VYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 112 i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
+++.-...+ ..++-=|.-|.+...
T Consensus 204 ~YLGY~I~~--c~kM~YK~~f~P~E~ 227 (240)
T PRK01305 204 VYLGYWIKG--SRKMNYKARFRPLEI 227 (240)
T ss_pred EeeeEEECC--CCcccccccCCccee
Confidence 998654432 223333444444433
No 98
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=97.53 E-value=0.00088 Score=46.79 Aligned_cols=78 Identities=18% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCCChhHHHHHhhcC----ceEEEEEe--CCcEEEEEEeEeeecC---CCeeEEEEEEeeeCcccccCChHHHHHHHHHH
Q 038810 32 VRYNDKYYSDALASG----EFTKLAYY--SDICVGAIACRLEKKE---GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLD 102 (164)
Q Consensus 32 ~~~~~~~~~~~~~~~----~~~~~~~~--~~~~vG~~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~ 102 (164)
..++.+++...+..+ .++.++.. .+++|||++..+.... .-.+.+.|..++||.+.|+|+++.-|++.+..
T Consensus 115 f~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITR 194 (421)
T KOG2779|consen 115 FDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITR 194 (421)
T ss_pred hhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHH
Confidence 456778888877763 45566544 4699999998877543 22337899999999999999999999999999
Q ss_pred HHHhcCC
Q 038810 103 LCAKQNI 109 (164)
Q Consensus 103 ~~~~~~~ 109 (164)
.+.-.|+
T Consensus 195 Rvnl~gI 201 (421)
T KOG2779|consen 195 RVNLEGI 201 (421)
T ss_pred Hhhhhhh
Confidence 8876664
No 99
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=97.50 E-value=0.0071 Score=38.60 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=76.0
Q ss_pred eccCcc-cHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccC
Q 038810 12 DGVRDK-NLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGL 90 (164)
Q Consensus 12 r~~~~~-d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~ 90 (164)
..++.- |.+.+.++..+.+......+.+-..++... +-++.++..-|.+.+.+..........++..++|.+..||.
T Consensus 26 ~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~--~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~ 103 (170)
T PF04768_consen 26 SSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRL--FKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGS 103 (170)
T ss_dssp SSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS---SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHT
T ss_pred cCccccCCHHHHHHHHHhcccccccHHHHHHHhhccc--eEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhc
Confidence 344555 899999999999955555555555554432 22333444555555554332333348999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHH--HcCCeEecceecc
Q 038810 91 GIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYK--KFGFDITDTIKNY 141 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~--~~GF~~~~~~~~~ 141 (164)
|++-.+...+.+.. +.+...+..+|+ ..++|- .-|+.......-|
T Consensus 104 gv~D~vf~~i~~d~-----p~L~Wrsr~~n~-~~~Wyf~rs~G~~~~~~~~lF 150 (170)
T PF04768_consen 104 GVADNVFNAIRKDF-----PKLFWRSREDNP-NNKWYFERSDGSFKRNGWVLF 150 (170)
T ss_dssp THHHHHHHHHHHH------SSEEEEEETT-T-THHHHHHH-SEEEEETTEEEE
T ss_pred CHHHHHHHHHHHhc-----cceEEEecCCCC-cccEEEEeeEEEEECCCeEEE
Confidence 99999999886653 346777777775 445543 3587775555544
No 100
>PRK14852 hypothetical protein; Provisional
Probab=97.43 E-value=0.0021 Score=51.27 Aligned_cols=144 Identities=11% Similarity=0.104 Sum_probs=98.5
Q ss_pred EEEecc-CcccHHHHHHHHHhcCC-CCCCh----hHHHHHhh-c-CceEEEEEeCCcEEEEEEeEeeecC----------
Q 038810 9 ISLDGV-RDKNLMQLKKLNIALFP-VRYND----KYYSDALA-S-GEFTKLAYYSDICVGAIACRLEKKE---------- 70 (164)
Q Consensus 9 ~~ir~~-~~~d~~~i~~l~~~~~~-~~~~~----~~~~~~~~-~-~~~~~~~~~~~~~vG~~~~~~~~~~---------- 70 (164)
..+|.+ +.+|+..+..+..+.|. ..+.. ...-.... . ...+|++...++++|.+.+.++...
T Consensus 29 ~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~ 108 (989)
T PRK14852 29 PAIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYK 108 (989)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHH
Confidence 456666 67788888888776653 22221 11111111 1 2345777666777787777766542
Q ss_pred --------CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHH-cCCeEecceecc
Q 038810 71 --------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKK-FGFDITDTIKNY 141 (164)
Q Consensus 71 --------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~~~~ 141 (164)
.+...+.+..++++++.|++-+--.+++.+..++...+++.+.+.|.+ .=..||++ +||+..+..+.|
T Consensus 109 ~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnP---kH~~FY~r~l~f~~ig~~r~~ 185 (989)
T PRK14852 109 PEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNP---KHVKFYTDIFLFKPFGEVRHY 185 (989)
T ss_pred HHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECc---chHHHHHHHhCCccccccccC
Confidence 344588999999999999888888888889888877788888888877 55789996 699999988766
Q ss_pred ccccCCCceeEEeeec
Q 038810 142 YTNITPPDCYVLTKFI 157 (164)
Q Consensus 142 ~~~~~~~~~~~~~k~l 157 (164)
-.-+ ...+.|.-++
T Consensus 186 p~Vn--aPAvll~~dl 199 (989)
T PRK14852 186 DTVD--APAVALRIDL 199 (989)
T ss_pred CCCC--cchhheecCH
Confidence 3322 3466666555
No 101
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=97.42 E-value=0.0092 Score=36.18 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=56.9
Q ss_pred hhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEE
Q 038810 36 DKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEV 112 (164)
Q Consensus 36 ~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i 112 (164)
...+...+.. +...+-...+|++||++.+..-++. +.-....-+|++...++|+..+-..++.|++.|.+.+
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~g-----lSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~ 99 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDG-----LSAVYTFYDPDYSKRSLGTYSILREIELARELGLPYY 99 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccch-----hhheeeeeCCCccccCcHHHHHHHHHHHHHHcCCCEE
Confidence 4455555543 3344555679999999888766552 2223344699999999999999999999999999999
Q ss_pred EEEEec
Q 038810 113 YLHVQT 118 (164)
Q Consensus 113 ~~~~~~ 118 (164)
++.-..
T Consensus 100 YLGY~I 105 (128)
T PF04377_consen 100 YLGYWI 105 (128)
T ss_pred eeCeEe
Confidence 885443
No 102
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.32 E-value=0.0027 Score=36.61 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=45.2
Q ss_pred EEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCCh
Q 038810 50 KLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNE 121 (164)
Q Consensus 50 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~ 121 (164)
+-+..++..=|++.+.+.... ...++..++|.+..||.|+|..++..+.+.. ..+...+.++|+
T Consensus 12 ~~~y~~e~y~~~aivt~~~~~---~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~ 75 (99)
T cd04265 12 HTIYLSEGYNAAAIVTNEEVD---GVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNP 75 (99)
T ss_pred eEEEEeCCCcEEEEEeccCCC---CceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc
Confidence 344445545555555544311 1789999999999999999999999888763 356677777775
No 103
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.28 E-value=0.00064 Score=49.25 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=62.0
Q ss_pred eEEEEEeC---CcEEEEEEeEeeecC------CC-----------eeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc
Q 038810 48 FTKLAYYS---DICVGAIACRLEKKE------GG-----------AICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ 107 (164)
Q Consensus 48 ~~~~~~~~---~~~vG~~~~~~~~~~------~~-----------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 107 (164)
..|....+ +.++|+..+...... .+ +..+-++. . ...+|.+|+|+.|++.++..|++.
T Consensus 405 e~Fls~ed~~~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~-~-~~~~QH~G~G~~L~~~AE~ia~ee 482 (515)
T COG1243 405 EIFLSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGK-R-EDEWQHRGYGRELLEEAERIAREE 482 (515)
T ss_pred EEEeecccchhhhhhheeeecccccchhhhhcccchhhhhhhhcccccccccc-C-cchhhcccHHHHHHHHHHHHHHhh
Confidence 34554443 568999998876652 00 01122333 2 467999999999999999999999
Q ss_pred CCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 108 NISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
+..+|.+.... .++..|.|+||...+..
T Consensus 483 ~~~ki~viSgi---G~ReYy~k~GY~~~gpY 510 (515)
T COG1243 483 GAKKILVISGI---GVREYYRKLGYELDGPY 510 (515)
T ss_pred ccccEEEEecc---cHHHHHHHhCccccCCc
Confidence 88887666554 78999999999988754
No 104
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0033 Score=46.90 Aligned_cols=133 Identities=9% Similarity=0.058 Sum_probs=90.5
Q ss_pred eeEEEeccCcccHHHHHHHHHhcCC-------CCCChhHHH-----HHhhc-CceEEEEEeC-CcEEEEEEeEeeecC--
Q 038810 7 VAISLDGVRDKNLMQLKKLNIALFP-------VRYNDKYYS-----DALAS-GEFTKLAYYS-DICVGAIACRLEKKE-- 70 (164)
Q Consensus 7 ~~~~ir~~~~~d~~~i~~l~~~~~~-------~~~~~~~~~-----~~~~~-~~~~~~~~~~-~~~vG~~~~~~~~~~-- 70 (164)
|-+.|||....|-+.+..+....+. .+-.+++.. -++.. ...++++.+. +++||+++...+...
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~ 757 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFS 757 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhh
Confidence 4478999999999999999876653 111122222 22221 3456777664 569999987655321
Q ss_pred ---------------------------------------CC-e--------------eEEEEEEeeeCcccccCChHHHH
Q 038810 71 ---------------------------------------GG-A--------------ICVYIMTLGVLAPYRGLGIGTKL 96 (164)
Q Consensus 71 ---------------------------------------~~-~--------------~~~~i~~~~v~~~~rg~Gig~~l 96 (164)
++ . ..-.+....++.+.---|+++.|
T Consensus 758 rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m 837 (891)
T KOG3698|consen 758 RNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKKM 837 (891)
T ss_pred hceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHHH
Confidence 00 0 00001112233344456899999
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 97 LNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
++-++...+.+|.....+.+..++.+-++||.++||...+...
T Consensus 838 ~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e 880 (891)
T KOG3698|consen 838 IQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSE 880 (891)
T ss_pred HHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhh
Confidence 9999999999999999999999999999999999998887655
No 105
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.17 E-value=0.0021 Score=49.13 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=56.7
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEE-----------------------------------------
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVY----------------------------------------- 113 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~----------------------------------------- 113 (164)
.+.|..++|+|+|++.|+|++.++.+.++....... +.
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~-i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~e 692 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTS-ISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSE 692 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCC-ccccccccCccccccchhhhhhhhhhhcccccCCCceeeEccc
Confidence 578999999999999999999999999887644211 11
Q ss_pred --------EEEec-CChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCC
Q 038810 114 --------LHVQT-NNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQ 159 (164)
Q Consensus 114 --------~~~~~-~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~ 159 (164)
+.+.- --+...+||+++||.+.......-... .....+|-|.|..
T Consensus 693 r~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lT-GEHtcimLk~L~~ 746 (1011)
T KOG2036|consen 693 RPPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLT-GEHTCIMLKTLEG 746 (1011)
T ss_pred CCCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccc-cceeEEEEecCCC
Confidence 11110 112568999999999998766432222 2455667777753
No 106
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=97.11 E-value=0.0028 Score=39.88 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=89.6
Q ss_pred ccCcccHHHHHHHHHhcCCC--CCChhHHH---HHhhc-CceEEEEEeCCcEEEEEEeEeeecC---CCeeEEEEEEeee
Q 038810 13 GVRDKNLMQLKKLNIALFPV--RYNDKYYS---DALAS-GEFTKLAYYSDICVGAIACRLEKKE---GGAICVYIMTLGV 83 (164)
Q Consensus 13 ~~~~~d~~~i~~l~~~~~~~--~~~~~~~~---~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~---~~~~~~~i~~~~v 83 (164)
+++.+|..++.++....|.. .++..-|+ .+... ++.-.+.++...+++.+.+-..-.. ....+++++..+|
T Consensus 14 eL~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~LRRFIkVG~vDlLVaElGLygV 93 (196)
T PF02474_consen 14 ELQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGLLRRFIKVGEVDLLVAELGLYGV 93 (196)
T ss_pred ccchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHHHHHHhccCCcceeEEEEEEEEe
Confidence 46777888888888887763 24332221 12222 3344445555444443332211111 1122788999999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcC---C-------eEecceeccccccCC---Cce
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFG---F-------DITDTIKNYYTNITP---PDC 150 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~G---F-------~~~~~~~~~~~~~~~---~~~ 150 (164)
.|+.+|.||+..+ ..+.-..++.|+...+.++.. +.++.+++++ . ...++..+.+.+..+ .|.
T Consensus 94 RpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed~ 169 (196)
T PF02474_consen 94 RPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDV 169 (196)
T ss_pred eccccccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHhccchhhcccCceeeccCccccCCCCCcccccc
Confidence 9999999999876 688888899999988888887 7777877764 3 444555554544443 477
Q ss_pred eEEeeecC
Q 038810 151 YVLTKFIT 158 (164)
Q Consensus 151 ~~~~k~l~ 158 (164)
+.+..++.
T Consensus 170 lv~V~Pi~ 177 (196)
T PF02474_consen 170 LVVVLPIG 177 (196)
T ss_pred eEEEEcCC
Confidence 77777663
No 107
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.93 E-value=0.014 Score=37.65 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=35.1
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.++|+.+=...... ..-+..+.|.|.||++|+|+.|++..-..++..|
T Consensus 66 h~vGyFSKEk~s~~----~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWD----NNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT-----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccC----CeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 47887664433322 3457788899999999999999999888887765
No 108
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0097 Score=40.63 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=55.6
Q ss_pred EEEeccCcccHHHHHHHHHhcCC----CCCChhHH-----------HHHhhc--CceEEEEEe--CCcEEEEEEeEeeec
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFP----VRYNDKYY-----------SDALAS--GEFTKLAYY--SDICVGAIACRLEKK 69 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~----~~~~~~~~-----------~~~~~~--~~~~~~~~~--~~~~vG~~~~~~~~~ 69 (164)
+.+||++..|++.+.++....=. -+-+++.+ ...... ..+.+++++ .|+++|++.+...-.
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vG 81 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVG 81 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeec
Confidence 56899999999999999876522 12222222 221111 245666666 589999888654321
Q ss_pred C--------------------------------CCeeEEEEEEeeeCcccccCChHHHH
Q 038810 70 E--------------------------------GGAICVYIMTLGVLAPYRGLGIGTKL 96 (164)
Q Consensus 70 ~--------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l 96 (164)
- +......+..++++|++|.-|-|+.|
T Consensus 82 l~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 82 LNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred cCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhh
Confidence 0 01115578899999999987777544
No 109
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.83 E-value=0.0026 Score=44.60 Aligned_cols=51 Identities=16% Similarity=0.440 Sum_probs=42.5
Q ss_pred cccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
.+||.||+|+.|++.++..+++. |-..|.+.... ..++.|.|+||+..+..
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGV---GtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGV---GTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEecc---chHHHHHhhCeeecChh
Confidence 37999999999999999999766 77777665554 67899999999988754
No 110
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=96.82 E-value=0.033 Score=38.97 Aligned_cols=106 Identities=10% Similarity=-0.070 Sum_probs=61.5
Q ss_pred EEEecc---CcccHHHHHHHHHhcCCCC--CChhHHHHHhhc----CceEEEEEe-CCcEEEEEEeEeeecCCCeeEEEE
Q 038810 9 ISLDGV---RDKNLMQLKKLNIALFPVR--YNDKYYSDALAS----GEFTKLAYY-SDICVGAIACRLEKKEGGAICVYI 78 (164)
Q Consensus 9 ~~ir~~---~~~d~~~i~~l~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i 78 (164)
+++++. ++++.+++.++..+..... ....++...+.. +...+++.. +|+++|++.+.+..... .+.+
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~---~~~~ 209 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRD---GWSI 209 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TT---EEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCc---cEEE
Confidence 556666 7888888888866543332 112223333322 566788888 99999999999888321 4444
Q ss_pred EEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 79 MTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 79 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
.-.--+++ -=+|+...|+..+++.+++.|+..+.+...+
T Consensus 210 ~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 210 DFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp EEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred EEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 44444555 3467999999999999998899988865443
No 111
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=96.82 E-value=0.063 Score=34.81 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=81.3
Q ss_pred EeccCcccHHHHHHHHHhcCC-----CCCChhHHHHHhhc-C--ceEEEEEeCC-cEEEEEEeEeeecC-------CCee
Q 038810 11 LDGVRDKNLMQLKKLNIALFP-----VRYNDKYYSDALAS-G--EFTKLAYYSD-ICVGAIACRLEKKE-------GGAI 74 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~-~--~~~~~~~~~~-~~vG~~~~~~~~~~-------~~~~ 74 (164)
+|+++++|.+++..+.++... ..++++.+..++.. . -..++..+++ ++-.++++..-+.. ....
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 899999999999999886644 45677888888755 2 2456666654 78888877655432 1122
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecccc
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYT 143 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~ 143 (164)
.+++... +...-+ -.+|+..++-.|++.|++.+.+...-+|. .|.+.+.|..-.-.-+||.
T Consensus 111 aAY~fY~-~~~~~~----l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YYL 171 (190)
T PF02799_consen 111 AAYSFYY-VATSTR----LKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYYL 171 (190)
T ss_dssp EEEEEEE-EESSSH----HHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEEEEEEEEEE
T ss_pred eeeeeee-eecCCC----HHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCCCCCeEEEE
Confidence 4444332 222211 36888899999999999988887777775 6899999986655555543
No 112
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=96.45 E-value=0.11 Score=36.02 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=71.2
Q ss_pred CceEEEEEeCCcEEEEEEeEeeecCC--CeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc---------C-CcEEE
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKKEG--GAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ---------N-ISEVY 113 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~---------~-~~~i~ 113 (164)
+....++...+.+|+.+.+.+..... ..-.+.|.++.|+.-|..-|+-..|++++.-+.++. | --.+.
T Consensus 168 ~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 168 GKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 44566777888999999988876652 233788999999999999999999999996655442 1 12344
Q ss_pred EEEecCChHHHHHHHHcCCeEec
Q 038810 114 LHVQTNNEDAINFYKKFGFDITD 136 (164)
Q Consensus 114 ~~~~~~n~~~~~~~~~~GF~~~~ 136 (164)
+.+...+....+..++.||..+.
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EEeeeccHHHHHHHHHCCCeeee
Confidence 56777888999999999999988
No 113
>PRK00756 acyltransferase NodA; Provisional
Probab=96.40 E-value=0.046 Score=34.36 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=83.3
Q ss_pred ccCcccHHHHHHHHHhcCCC--CCChhHHH---HHhhc-CceEEEEEeCCcEEEEEEeEeee---cCCCeeEEEEEEeee
Q 038810 13 GVRDKNLMQLKKLNIALFPV--RYNDKYYS---DALAS-GEFTKLAYYSDICVGAIACRLEK---KEGGAICVYIMTLGV 83 (164)
Q Consensus 13 ~~~~~d~~~i~~l~~~~~~~--~~~~~~~~---~~~~~-~~~~~~~~~~~~~vG~~~~~~~~---~~~~~~~~~i~~~~v 83 (164)
+++..|..++.++....|.. .++..-|+ .+... ++.-.+.++...+.+.+.+-..- ......+++++..+|
T Consensus 14 eL~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygV 93 (196)
T PRK00756 14 ELELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGV 93 (196)
T ss_pred ccccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHHHHhhhheecccceeEEEeeeeee
Confidence 45677888888888877752 23222111 11111 33344445544444433321111 111223788999999
Q ss_pred CcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHc----------CCeEecceeccccccC---CCce
Q 038810 84 LAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKF----------GFDITDTIKNYYTNIT---PPDC 150 (164)
Q Consensus 84 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~----------GF~~~~~~~~~~~~~~---~~~~ 150 (164)
.|+..|.||+..+ ..+.--.++.|+.....+++. +.++-.+++ |-...++..+.+.+.. ..|.
T Consensus 94 RpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~r~g~~ti~~gvrVRSTl~~v~~dlpptr~ed~ 169 (196)
T PRK00756 94 RPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH---ALRNHVERLCRNGLATIVTGVRVRSTLPDVYLDLPPTRTEDV 169 (196)
T ss_pred ccccccccchhhH-HHHHHHHHhcCCCeecccchH---HHHHHHHHHhccCcceecccceeeccCccccCCCCCcccccc
Confidence 9999999998876 678888889999988777776 666665554 3344445554444332 3566
Q ss_pred eEEeeec
Q 038810 151 YVLTKFI 157 (164)
Q Consensus 151 ~~~~k~l 157 (164)
+++..++
T Consensus 170 lv~V~Pi 176 (196)
T PRK00756 170 LVVVFPI 176 (196)
T ss_pred EEEEEeC
Confidence 6666665
No 114
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=96.32 E-value=0.018 Score=39.54 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=35.9
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.+||+.+=...... ..-+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 141 h~vGYFSKEK~s~~----~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 141 HIVGYFSKEKVSAE----DYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEeceeccccC----CCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 58888664443322 1237778899999999999999999888877665
No 115
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=96.18 E-value=0.025 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.071 Sum_probs=38.8
Q ss_pred cCceEEEEEeCCc-EEEEEEeEeeecC-------------------CCeeEEEEEEeeeCcccccCChHHHHH
Q 038810 45 SGEFTKLAYYSDI-CVGAIACRLEKKE-------------------GGAICVYIMTLGVLAPYRGLGIGTKLL 97 (164)
Q Consensus 45 ~~~~~~~~~~~~~-~vG~~~~~~~~~~-------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~ 97 (164)
....++++.+++. +||++.+...... .....+.++.++|+|+||+......|+
T Consensus 28 ~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3456677766655 9999998766542 112588999999999999988776664
No 116
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=96.10 E-value=0.053 Score=37.76 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=69.2
Q ss_pred cCcccHHHHHHHHHhcCCC--------CCChhHHHHHhhcC----ceEEEEEeCC--cEEEEEEeEeeecC---CCeeEE
Q 038810 14 VRDKNLMQLKKLNIALFPV--------RYNDKYYSDALASG----EFTKLAYYSD--ICVGAIACRLEKKE---GGAICV 76 (164)
Q Consensus 14 ~~~~d~~~i~~l~~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~~~~--~~vG~~~~~~~~~~---~~~~~~ 76 (164)
.....++++..+..+.+.+ .++.+++...+..+ .+++++...+ ++|||+...+..-. ...+++
T Consensus 87 ~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~ 166 (451)
T COG5092 87 ANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVL 166 (451)
T ss_pred cccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccc
Confidence 3455677777777766542 33456666666653 3566665554 89999987766533 223388
Q ss_pred EEEEeeeCcccccCChHHHHHHHHHHHHHhcCCc
Q 038810 77 YIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNIS 110 (164)
Q Consensus 77 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~ 110 (164)
.+..++|+.+.|++.+..-|++.+...+...|+.
T Consensus 167 evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw 200 (451)
T COG5092 167 EVNFLCIHKELRSKRLTPVLIKEITRRANVDGIW 200 (451)
T ss_pred eEEEEEEehhhhhCccchHHHHHHHHhhhhhhhH
Confidence 8999999999999999999999999998766643
No 117
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.05 E-value=0.0057 Score=44.38 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=45.6
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec-----CChHHHHHHHHcCCeEecc
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT-----NNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~-----~n~~~~~~~~~~GF~~~~~ 137 (164)
.+.|..+.|||+||+-|+|..-+..+.++..++-+..+.-.-+- .-..=..|+++.||.....
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylwd 308 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLWD 308 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeeee
Confidence 57899999999999999999999999999988866554332110 0001134899999987643
No 118
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=96.02 E-value=0.14 Score=37.04 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=77.3
Q ss_pred ccCcccHHHHHHHHHhcCCCCC-----ChhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 13 GVRDKNLMQLKKLNIALFPVRY-----NDKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 13 ~~~~~d~~~i~~l~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
.+++++++.+..+....+...| +.+++...... .-..+++..+|++||++.+....+ +++-...+..
T Consensus 209 ~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~-----~LyGRYwG~~ 283 (370)
T PF04339_consen 209 EITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDD-----TLYGRYWGCD 283 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCC-----EEEEeeeccc
Confidence 3456677888888776655333 45666666554 334566778999999988887765 5554455555
Q ss_pred cccccCChHH-HHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc
Q 038810 85 APYRGLGIGT-KLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 85 ~~~rg~Gig~-~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~ 141 (164)
.++. ++-- .+.-..+++|-++|+..+...+..++ =...||.++.+...+
T Consensus 284 ~~~~--~LHFe~cYYq~Ie~aI~~Gl~~f~~GaqGEH------K~~RGf~P~~t~S~H 333 (370)
T PF04339_consen 284 EEIP--FLHFELCYYQGIEYAIEHGLRRFEPGAQGEH------KIARGFEPVPTYSAH 333 (370)
T ss_pred cccc--CcchHHHHHHHHHHHHHcCCCEEECCcchhH------HHHcCCccccceeee
Confidence 5554 4444 44667999999999998766643322 235699999887654
No 119
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.23 Score=33.06 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHhhc-CceEEEEEeC-----CcEEEEEEeEeee-----cC---CCeeEEEEEEeeeCcccccCChHHHHHHHHHHH
Q 038810 38 YYSDALAS-GEFTKLAYYS-----DICVGAIACRLEK-----KE---GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDL 103 (164)
Q Consensus 38 ~~~~~~~~-~~~~~~~~~~-----~~~vG~~~~~~~~-----~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 103 (164)
..+..++. ...++.+.++ +.+.|++.+.... +. .......|..++|++..|+.|.|.+|++++++.
T Consensus 57 sadKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~k 136 (264)
T KOG4601|consen 57 SADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKK 136 (264)
T ss_pred hHHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHHh
Confidence 34455534 3334444332 3577777654332 11 122367899999999999999999999998875
Q ss_pred HHhcCCcEEEEEEecCChHHHHHHHH
Q 038810 104 CAKQNISEVYLHVQTNNEDAINFYKK 129 (164)
Q Consensus 104 ~~~~~~~~i~~~~~~~n~~~~~~~~~ 129 (164)
- +..-=-+.+.......++|..|
T Consensus 137 E---~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 137 E---NVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred c---CCCchheeccChHHHHHHHHHH
Confidence 2 2332223333322345666655
No 120
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.71 E-value=0.24 Score=30.40 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=70.2
Q ss_pred EEEeccCcccHHHHHHHHHhc----------CCCC-----C--ChhHHHHHhhcCceEEEEE-eCCcEEEEEEeEeeecC
Q 038810 9 ISLDGVRDKNLMQLKKLNIAL----------FPVR-----Y--NDKYYSDALASGEFTKLAY-YSDICVGAIACRLEKKE 70 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~----------~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~ 70 (164)
+.+|++++.|++.+..+.... +|+. . +...+ ..+....+.|++. +++++.||+....-...
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Al-rfy~RsgHSFvA~~e~~~~~GfvLAQaVWQG 79 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAAL-RFYERSGHSFVAEDEGGELQGFVLAQAVWQG 79 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHH-HHHHCCS--EEEE-ETTEEEEEEEEEEEE-S
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHh-hhhhccCCcEEEEccCCceeeeeehhHHhcC
Confidence 468999999999998773322 2211 1 11222 2334456789998 78899999987766543
Q ss_pred CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 71 GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 71 ~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
..+.+.+..+.+.|. +......-|+.++.+-+-+.++..+.+...+ ....-.+..||...+.
T Consensus 80 -drptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 80 -DRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAARAEGFRLGGQ 141 (161)
T ss_dssp -SSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHHHHTT----S-
T ss_pred -CCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHHhhcccccCCe
Confidence 333677777766553 3456778899999999999999999888877 6777788889987763
No 121
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=95.66 E-value=0.24 Score=29.96 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=64.0
Q ss_pred CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHH
Q 038810 46 GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAI 124 (164)
Q Consensus 46 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~ 124 (164)
+..++.+.+.+.++|+..+...... ....+ -.-+|++|| ++...-...-++..+. .+..+...+...-+-.+
T Consensus 37 ~~~Y~gVyeg~~l~Gi~~v~~i~~~----~vecH-a~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Gr 109 (151)
T PF11039_consen 37 DQLYLGVYEGGQLGGIVYVEEIQPS----VVECH-AMYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGR 109 (151)
T ss_pred ccEEEEEEeceEEEEEEEEEEEeee----eEEEE-eeeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccch
Confidence 4556667778889998887766553 33333 335899999 7776666666666555 45555455555555666
Q ss_pred HHHHHcCCeEecceecccccc
Q 038810 125 NFYKKFGFDITDTIKNYYTNI 145 (164)
Q Consensus 125 ~~~~~~GF~~~~~~~~~~~~~ 145 (164)
-..+-+|.+.++...+++...
T Consensus 110 vic~llg~~RVG~id~~~~g~ 130 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYFKGV 130 (151)
T ss_pred hHhhhhCCceeeeHHHHhcCC
Confidence 777778999999999988643
No 122
>PLN03239 histone acetyltransferase; Provisional
Probab=95.60 E-value=0.046 Score=38.66 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=35.2
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.+||+.+=...... ..-+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 199 h~vGYFSKEK~s~~----~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 199 HPVGYYSKEKYSDV----GYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred EEEEEeeecccCCC----CCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 57887654433221 1237778899999999999999999888877664
No 123
>PTZ00064 histone acetyltransferase; Provisional
Probab=95.57 E-value=0.035 Score=41.00 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=35.7
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.+||+.+=...... ..-+..|.|.|.||++|+|+.|++..-...+..|
T Consensus 370 HiVGYFSKEK~S~~----~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 370 HIVGYFSKEKVSLL----HYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred EEEEEecccccCcc----cCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 68887654433322 2237778899999999999999999888877654
No 124
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.44 E-value=0.18 Score=35.80 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEeccCcccHHHHHHHHHhcC-----CCCCChhHHHHHhhcC-c--eEEEEEe-CCcEEEEEEeEeeecC----CC---e
Q 038810 10 SLDGVRDKNLMQLKKLNIALF-----PVRYNDKYYSDALASG-E--FTKLAYY-SDICVGAIACRLEKKE----GG---A 73 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~-----~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~vG~~~~~~~~~~----~~---~ 73 (164)
-+|++.+.|.+++.++..... ...++.+.+..++... . ..++++. +|.+-+|+++..-+.. .. .
T Consensus 262 G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl 341 (421)
T KOG2779|consen 262 GLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTL 341 (421)
T ss_pred CcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCccee
Confidence 379999999999999987553 2566777777777653 2 2455554 7889888887765542 11 1
Q ss_pred eEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecccc
Q 038810 74 ICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYT 143 (164)
Q Consensus 74 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~ 143 (164)
..+|+.. .|+.+- =-.+|+..++-.++..|++...+...-+|. .|+++++|-+-.-.-+||.
T Consensus 342 ~aaYlyY-~v~~~t----~~~~lvnDalilak~~gfDVFNAld~meN~---~fl~~LkFg~GdG~l~YYL 403 (421)
T KOG2779|consen 342 QAAYLYY-NVATST----PLLQLVNDALILAKQKGFDVFNALDLMENE---SFLKDLKFGPGDGNLQYYL 403 (421)
T ss_pred eeeeEEE-eccCCc----cHHHHHHHHHHHHHhcCCceeehhhhhhhh---hHHHhcCcCcCCCceeEEE
Confidence 1233221 122221 136788888888888899977776666554 6999999988766666554
No 125
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=95.13 E-value=0.071 Score=37.92 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=40.1
Q ss_pred EEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 58 CVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 58 ~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
++|+..+.............|..+.+.|.|||+|+|+.|++.+....... -..+.+++..
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEd 259 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVED 259 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecC
Confidence 56666665444332223556888899999999999999999999665543 2333444443
No 126
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.24 Score=35.58 Aligned_cols=111 Identities=22% Similarity=0.315 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCccccc-CChHHH
Q 038810 17 KNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRG-LGIGTK 95 (164)
Q Consensus 17 ~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg-~Gig~~ 95 (164)
-|++.+..+.++.|.......++...+..+- .-+..-|..-|.+.+..... .+....|+..++|.++.|| -||+..
T Consensus 345 Ldl~r~q~LI~~SFkRTLd~h~y~~r~~~~L--a~~iVsgdY~g~aIlTyegs-~~~~vpYLDKfAVl~~aQGs~gisd~ 421 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLDPHYYETRINTPL--ARAIVSGDYRGAAILTYEGS-GENNVPYLDKFAVLDDAQGSEGISDA 421 (495)
T ss_pred cCcHHHHHHHHHHHhhccCHHHHHHhccCcc--eeEEeeccceeeEEEEeecc-CCCCCcceeeeeccccccccchHHHH
Confidence 3677888899999988888888888777642 22233445555555554421 1222789999999999999 899999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEecCChHHHHHH--HHcCCeEe
Q 038810 96 LLNHVLDLCAKQNISEVYLHVQTNNEDAINFY--KKFGFDIT 135 (164)
Q Consensus 96 l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~--~~~GF~~~ 135 (164)
++.-+.+..-+ .+..-.+.+| .+.++| ++-|+-..
T Consensus 422 vfniM~e~fP~----eL~WRSR~~N-~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 422 VFNIMREEFPN----ELFWRSRHNN-QVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHhCcH----hhhhhhcccC-cchheeeehhhehhhc
Confidence 99888776542 2334444455 334443 34455433
No 127
>PRK04531 acetylglutamate kinase; Provisional
Probab=94.99 E-value=0.23 Score=36.37 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=71.4
Q ss_pred cCcccHHHHHHHHHhcCCCCCChhHHHHHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChH
Q 038810 14 VRDKNLMQLKKLNIALFPVRYNDKYYSDALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIG 93 (164)
Q Consensus 14 ~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig 93 (164)
+..=|++.+..+....+.....+.++. .. ..+-++.++..=|.+.+..... ..++..++|.+..||.|++
T Consensus 259 ~~~~d~~~l~~ll~~sf~r~~~~~y~~----~~-~~~~~y~~~~y~~~Aiv~~~~~-----~~~Ldkf~v~~~~~~~~v~ 328 (398)
T PRK04531 259 WDELDLERLNLLIESSFGRTLKPDYFD----TT-QLLRAYVSENYRAAAILTETGG-----GPYLDKFAVLDDARGEGLG 328 (398)
T ss_pred hhhcCHHHHHHHHhhhcccchHHHHhc----cC-CceEEEEeCCCcEEEEEecCCC-----ceEeEEEEEccchhhcChH
Confidence 333477778888776665544444444 22 3344444555444444544322 7899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCChH-HHHHHHHcCCeEecceecc
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNNED-AINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n~~-~~~~~~~~GF~~~~~~~~~ 141 (164)
..++..+.+.. +.+...++++|+. ...|=++-|+.......-|
T Consensus 329 d~vf~~~~~~~-----~~L~Wrsr~~n~~~~Wyf~~s~G~~~~~~~~lF 372 (398)
T PRK04531 329 RAVWNVMREET-----PQLFWRSRHNNTINKFYYAESDGCIKQEKWKVF 372 (398)
T ss_pred HHHHHHHHhhC-----CceEEEcCCCCCccceeeecccceEecCCcEEE
Confidence 99999888764 3577777777762 3333334576665554444
No 128
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=94.98 E-value=0.038 Score=40.52 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=35.3
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.+||+.+=...... ..-+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 292 h~vGyFSKEk~s~~----~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 292 HMVGYFSKEKHSEE----DYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred EEEEEecccccCcC----CCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 68888654433322 1237778899999999999999998877776554
No 129
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.32 Score=32.81 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=47.9
Q ss_pred CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecC
Q 038810 55 SDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTN 119 (164)
Q Consensus 55 ~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~ 119 (164)
.|++|+++....-.+ .+.....+-+|++...++|+..+-.-+.++++.|...+++.-...
T Consensus 159 ~G~LvAVavtDvL~d-----GlSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~ 218 (253)
T COG2935 159 EGKLVAVAVTDVLPD-----GLSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIK 218 (253)
T ss_pred CCcEEEEEeeecccC-----cceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEEC
Confidence 689999888776655 233334457999999999999998999999999999999975543
No 130
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=94.35 E-value=0.58 Score=27.54 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=44.0
Q ss_pred EEEEeCCcEEEEEEeEeeecC--CCeeEEEEEEeeeCccccc-CChHHHHHHHHHHHHHhcCCcE-EEEEEecCCh
Q 038810 50 KLAYYSDICVGAIACRLEKKE--GGAICVYIMTLGVLAPYRG-LGIGTKLLNHVLDLCAKQNISE-VYLHVQTNNE 121 (164)
Q Consensus 50 ~~~~~~~~~vG~~~~~~~~~~--~~~~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~~~~~~~~~~-i~~~~~~~n~ 121 (164)
+-+..++..=|.+.+...... .+....++..++|.+..|| .|++..+...+.+. ... +...++++|+
T Consensus 12 ~~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~-----fp~~L~Wrsr~~n~ 82 (108)
T cd04266 12 ATVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDG-----FPNELIWRSRKDNP 82 (108)
T ss_pred cEEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHc-----CCCceEEEeCCCCc
Confidence 333445554444445433211 1223789999999999997 89999999888773 333 6667777775
No 131
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=93.78 E-value=0.63 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.064 Sum_probs=27.5
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHH
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCA 105 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 105 (164)
.+-|..++|.+.-|++|+++.|++.+.....
T Consensus 183 ~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 183 ICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred EeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 6779999999999999999999998877653
No 132
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=93.75 E-value=0.15 Score=36.80 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=25.6
Q ss_pred EEEEeeeCcccccCChHHHHHHHHHHHHHhc
Q 038810 77 YIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQ 107 (164)
Q Consensus 77 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 107 (164)
-+..+.|.|.||++|+|+.|++..-+..+..
T Consensus 262 NlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 262 NLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred ceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 3667779999999999999999877766544
No 133
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=92.86 E-value=2.2 Score=35.70 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 55 SDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 55 ~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+|+++|++.+.+.... .+.+..+--+|+. =.|+...|+..++.++++.|+..+.+...+
T Consensus 429 ~G~i~af~s~~p~~~~----g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRR----GLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCC----CEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 6899999999996532 4666666667775 579999999999999999999999887655
No 134
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=92.41 E-value=1.7 Score=28.17 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=58.3
Q ss_pred eCCcEEEEEEeEeeecC------------------------CCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCC
Q 038810 54 YSDICVGAIACRLEKKE------------------------GGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNI 109 (164)
Q Consensus 54 ~~~~~vG~~~~~~~~~~------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~ 109 (164)
.+|++++.+++...... .....++++.++.. +.|.+..|+..+.......|+
T Consensus 42 ~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~ 117 (179)
T PF12261_consen 42 SDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGF 117 (179)
T ss_pred CCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCC
Confidence 46888888888766532 11125667666554 478999999999999999999
Q ss_pred cEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 110 SEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
+.+..+... ..++.+.++|......-
T Consensus 118 ~w~vfTaT~---~lr~~~~rlgl~~~~La 143 (179)
T PF12261_consen 118 EWVVFTATR---QLRNLFRRLGLPPTVLA 143 (179)
T ss_pred CEEEEeCCH---HHHHHHHHcCCCceecc
Confidence 987666554 89999999999776543
No 135
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.04 E-value=0.93 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.5
Q ss_pred CcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 109 ISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
+..++-.|...|...++|.+.+|++...+
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~e 84 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHNE 84 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEccc
Confidence 77788899999999999999999986543
No 136
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=92.04 E-value=2.9 Score=30.45 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=67.3
Q ss_pred eEEEEEeCCcEEEEEEeEeeecCC----------------------------CeeEEEEEEeeeCcccccCChHHHHHHH
Q 038810 48 FTKLAYYSDICVGAIACRLEKKEG----------------------------GAICVYIMTLGVLAPYRGLGIGTKLLNH 99 (164)
Q Consensus 48 ~~~~~~~~~~~vG~~~~~~~~~~~----------------------------~~~~~~i~~~~v~~~~rg~Gig~~l~~~ 99 (164)
.++++.++|++||.+-+......- +..-+.-..+.++|......+...|++.
T Consensus 45 ~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~ 124 (370)
T PF04339_consen 45 RHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQA 124 (370)
T ss_pred eEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHH
Confidence 467788899999998877664330 0000111246677887778889999999
Q ss_pred HHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccC
Q 038810 100 VLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNIT 146 (164)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~ 146 (164)
+.+.+.+.|+..+.+.-. ++.-....+..||.......-.+.+.+
T Consensus 125 ~~~~a~~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~~~qf~W~N~g 169 (370)
T PF04339_consen 125 LEQLAEENGLSSWHILFP--DEEDAAALEEAGFLSRQGVQFHWHNRG 169 (370)
T ss_pred HHHHHHHcCCCcceeecC--CHHHHHHHHhCCCceecCCceEEecCC
Confidence 999999999887765432 245667788999988766655455444
No 137
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=91.54 E-value=3 Score=30.82 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=60.7
Q ss_pred EEEEEeC-CcEEEEEEeEeeecCCCeeEEEEEEeeeCc--ccccCChHHHHHHHHHHHHHhcCCcEEEEEE---------
Q 038810 49 TKLAYYS-DICVGAIACRLEKKEGGAICVYIMTLGVLA--PYRGLGIGTKLLNHVLDLCAKQNISEVYLHV--------- 116 (164)
Q Consensus 49 ~~~~~~~-~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~--~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~--------- 116 (164)
.+.+.++ +.++|.+.+.......+...+++.. -| +|...-+-..+++.+.++++++++-.+.+..
T Consensus 37 ~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yipr---GPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~ 113 (406)
T PF02388_consen 37 RVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPR---GPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDE 113 (406)
T ss_dssp EEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT-----EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-T
T ss_pred EEEEEeCCCeEEEEEEEEEeccCCceeEEEECC---CCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhccc
Confidence 4444555 5666665555444433333444432 24 6777778889999999999887655554321
Q ss_pred ------ecCChHHHHHHHHcCCeEecceeccccccCCCceeEEeeecCC
Q 038810 117 ------QTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVLTKFITQ 159 (164)
Q Consensus 117 ------~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~l~~ 159 (164)
...|...+..++++||...+....+-... .....+.++|+.
T Consensus 114 ~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~--qpr~~~v~dL~~ 160 (406)
T PF02388_consen 114 DGEPIEGEENDELIENLKALGFRHQGFTKGYDDTI--QPRWTYVKDLTG 160 (406)
T ss_dssp TS-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSS--S-SEEEEEEGCC
T ss_pred ccccccCcchHHHHHHHHhcCceecCcccCCCccc--CccEEEEEECCC
Confidence 12456788999999999988766543223 345777888865
No 138
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=91.30 E-value=2.2 Score=29.41 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=63.5
Q ss_pred EeccCcccHHHHHHHHHhcCCCCCC-----hhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEee
Q 038810 11 LDGVRDKNLMQLKKLNIALFPVRYN-----DKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLG 82 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~ 82 (164)
++++++-.-+++.++..+.|...|. .+.+.+.+.. --+..+++.+|++||+-.+...+.+... .+.....+
T Consensus 129 v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~wv-~~D~iNgG 207 (264)
T PF07395_consen 129 VRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKWV-YFDYINGG 207 (264)
T ss_pred EEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCeE-EEecccCc
Confidence 4555554555555555555553333 3344444443 2344667889999999888877765421 22333467
Q ss_pred eCcccccCChHHHH----HHHHHHHHHhcCCcEE
Q 038810 83 VLAPYRGLGIGTKL----LNHVLDLCAKQNISEV 112 (164)
Q Consensus 83 v~~~~rg~Gig~~l----~~~~~~~~~~~~~~~i 112 (164)
++|+++.--.|+-| ++.+.++|++.|-.-.
T Consensus 208 ~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lr 241 (264)
T PF07395_consen 208 YDPECRDFSPGSILMWLNIQDAWEYCRAQGKPLR 241 (264)
T ss_pred cCcccccCCCccEEEEeeHHHHHHHHHHhCCceE
Confidence 89999999999866 4677778877765533
No 139
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=90.71 E-value=5.2 Score=29.35 Aligned_cols=86 Identities=9% Similarity=0.037 Sum_probs=66.8
Q ss_pred hcCCCCCChhHHHHHhhc-----CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHH
Q 038810 28 ALFPVRYNDKYYSDALAS-----GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLD 102 (164)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~ 102 (164)
+.|...|..+++...+.. .-..+.+..+|.+|+......... +++..-.+++|++-.-.=|-.|+-.+++
T Consensus 248 Dlf~~~~t~~fl~dL~~~~~~d~~~rl~gL~~G~~lvAV~~~lr~~~-----t~h~~l~a~dpe~~~~SPG~~lf~d~i~ 322 (406)
T COG5653 248 DLFRAGWTRDFLRDLFTQRAEDGSGRLFGLHAGGRLVAVHGLLRQGG-----TYHAWLGAIDPEFARASPGMLLFLDLIE 322 (406)
T ss_pred cccccchHHHHHHHHHhccCcCCceEEEEEeeCCEEEEEEeeeccCC-----EEEEEeeccCHHHhhcCchHHHHHHHHH
Confidence 445577888888887765 123555667889999877666555 6666677899999999999999999999
Q ss_pred HHHhcCCcEEEEEEec
Q 038810 103 LCAKQNISEVYLHVQT 118 (164)
Q Consensus 103 ~~~~~~~~~i~~~~~~ 118 (164)
++.+.|+..+-+.+..
T Consensus 323 ~~~~~g~~~~DfgvG~ 338 (406)
T COG5653 323 WACGQGLARFDFGVGD 338 (406)
T ss_pred HHhcCCCeEEeecCCC
Confidence 9999999888777654
No 140
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=90.35 E-value=2.3 Score=24.61 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=43.5
Q ss_pred EEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCCh
Q 038810 51 LAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNE 121 (164)
Q Consensus 51 ~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~ 121 (164)
-+..++..=|.+.+...... ..++..++|.+..++.|++..+...+.+. ...+...+.++|+
T Consensus 13 ~~y~de~y~~~AIvt~~~~~----v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~ 74 (98)
T cd03173 13 ASYADEPLEGVAIVTYEGNS----IPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDA 74 (98)
T ss_pred EEEEcCCccEEEEEecCCCC----CEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCC
Confidence 33344444454455443322 77999999999999999999999888775 3467777777775
No 141
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=90.21 E-value=3.5 Score=26.53 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=50.9
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHH---HHHcCCeEecceeccccccCCCceeEEeee
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINF---YKKFGFDITDTIKNYYTNITPPDCYVLTKF 156 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~---~~~~GF~~~~~~~~~~~~~~~~~~~~~~k~ 156 (164)
+..-|+-.=-+..+.=+-+++++|.++ .++++.+....++..-..| +.=.||++...-. -......+.+.|++.
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~H--P~~pp~~~~ffM~Y~ 182 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDH--PVVPPRPDVFFMVYP 182 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCC--CCCCCccceEEEEEe
Confidence 334454444455566677777777666 7899988888766544344 4446999887652 222334789999999
Q ss_pred cCCC
Q 038810 157 ITQP 160 (164)
Q Consensus 157 l~~~ 160 (164)
+...
T Consensus 183 ~er~ 186 (191)
T KOG4387|consen 183 LERD 186 (191)
T ss_pred eccc
Confidence 8653
No 142
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=3.3 Score=31.68 Aligned_cols=61 Identities=7% Similarity=-0.074 Sum_probs=50.3
Q ss_pred eCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 54 YSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 54 ~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
.+|+++|++.+.+..... ...++-+--+|+.= +|+...|+..++.++++.|+.++.+...+
T Consensus 400 ~~g~VvaFa~l~~~~~~~---~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmAp 460 (538)
T COG2898 400 NEGEVVAFANLMPTGGKE---GYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMAP 460 (538)
T ss_pred CCCCeEEEEeecccCCcc---eeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCcc
Confidence 468899999999876643 56777777777766 58999999999999999999999886554
No 143
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=88.60 E-value=5.4 Score=28.00 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=61.4
Q ss_pred EeccCcccHHHHHHHHHhcCCCCC-------ChhHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEE
Q 038810 11 LDGVRDKNLMQLKKLNIALFPVRY-------NDKYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMT 80 (164)
Q Consensus 11 ir~~~~~d~~~i~~l~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~ 80 (164)
++++++---+++..+..+.|...| ..+.+.+.+.. --...|++.+|+++|+-.+...+.+... ......
T Consensus 157 v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi-~~D~iN 235 (298)
T PRK15312 157 VKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNV-YFDVPN 235 (298)
T ss_pred EEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcE-EEeccc
Confidence 455544444555555555554333 34444444443 2345677889999999888877765422 333345
Q ss_pred eeeCcccccCChHHHH----HHHHHHHHHhcCCc
Q 038810 81 LGVLAPYRGLGIGTKL----LNHVLDLCAKQNIS 110 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l----~~~~~~~~~~~~~~ 110 (164)
.+++|+++..-+|+-| ++.+.++|+++|.+
T Consensus 236 gG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~ 269 (298)
T PRK15312 236 GAVKNECMPLSPGSILMWLNISRARHYCQERQKK 269 (298)
T ss_pred CccCcccccCCCccEEEEecHHHHHHHHHhcCCc
Confidence 6799999999999855 46667777766644
No 144
>PHA02769 hypothetical protein; Provisional
Probab=88.20 E-value=0.68 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHHHH---HHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 93 GTKLLNHVL---DLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 93 g~~l~~~~~---~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
|..|+..+. +..+..|.+.++..-.++ -|.++|.|.||..++...
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpd--hsnaly~kagfk~vg~ts 141 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPD--HSNALYKKAGFKLVGQTS 141 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCC--cchhHHhhhhhhHhcccc
Confidence 455555544 444555777666555554 578899999999988654
No 145
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=87.56 E-value=0.41 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=29.7
Q ss_pred EEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHH
Q 038810 58 CVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCA 105 (164)
Q Consensus 58 ~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 105 (164)
+||+.+=...+.. ..-+..+-+.|.||++|+|+.|++..-...+
T Consensus 249 ~vGyFSKEK~S~~----~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 249 LVGYFSKEKESEQ----DYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred eeeeechhhcccc----cCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 7787654433332 2346677799999999999988876544433
No 146
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=86.40 E-value=8.8 Score=27.28 Aligned_cols=129 Identities=9% Similarity=0.099 Sum_probs=75.7
Q ss_pred EEeccCcccHHHHHHHHHhcCC-----CCCChhHHHHHhhc------Cce--EEEEE-eCCcEEEEEEeEeeecC-----
Q 038810 10 SLDGVRDKNLMQLKKLNIALFP-----VRYNDKYYSDALAS------GEF--TKLAY-YSDICVGAIACRLEKKE----- 70 (164)
Q Consensus 10 ~ir~~~~~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~------~~~--~~~~~-~~~~~vG~~~~~~~~~~----- 70 (164)
-+|++..+|.+++.++..+... ..+..+.+...+.. ... .+++. .+|.+-+|.++..-+..
T Consensus 260 GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~ 339 (451)
T COG5092 260 GLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENK 339 (451)
T ss_pred ccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCc
Confidence 3788999999999998765422 22333334433322 222 23333 36888888776544311
Q ss_pred --CCeeEEEEEEeeeCcccccCChH-----------HHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 71 --GGAICVYIMTLGVLAPYRGLGIG-----------TKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 71 --~~~~~~~i~~~~v~~~~rg~Gig-----------~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
.....+++...+.+..+. .+- ..|+..+.-.++..|++.+.+.+..+|. -|...++|-.-.-
T Consensus 340 kykdiq~gYLYYya~d~~~k--d~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~---lFL~dLkFg~GdG 414 (451)
T COG5092 340 KYKDIQGGYLYYYAGDDQFK--DFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNS---LFLADLKFGCGDG 414 (451)
T ss_pred cccccceeEEEEEccCcccc--ccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccch---hHHHhcCccCCCc
Confidence 112255666655555322 222 2345555556667788877777777664 4788899988777
Q ss_pred eecccc
Q 038810 138 IKNYYT 143 (164)
Q Consensus 138 ~~~~~~ 143 (164)
+.+||.
T Consensus 415 flnyYl 420 (451)
T COG5092 415 FLNYYL 420 (451)
T ss_pred eeEEEE
Confidence 666643
No 147
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=80.72 E-value=21 Score=26.54 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=39.6
Q ss_pred cEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEe
Q 038810 57 ICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQ 117 (164)
Q Consensus 57 ~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~ 117 (164)
.+++.+.+..... .++-..-+.+++|+.-+-...|.-.++++|.++|+....+.-.
T Consensus 303 ~~la~~l~~~~g~-----~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~Gi 358 (406)
T PF02388_consen 303 IPLAGALFIYYGD-----EAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGGI 358 (406)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE-
T ss_pred ceEEEEEEEEECC-----EEEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeCC
Confidence 4666665555554 4444466789999999977888888999999999998877543
No 148
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=77.03 E-value=6 Score=26.29 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHhc--CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 91 GIGTKLLNHVLDLCAKQ--NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
|+|..++..+++...+. ....+.+.........+++..++||....+..
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 78888998888877544 45677777777667888999999999998765
No 149
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=74.33 E-value=3.8 Score=24.89 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=19.4
Q ss_pred CcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 109 ISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
+..+.+.|.. =..+.+||.++||+....
T Consensus 4 i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 3455555543 348999999999987654
No 150
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=73.42 E-value=5 Score=23.53 Aligned_cols=16 Identities=31% Similarity=1.059 Sum_probs=13.6
Q ss_pred hHHHHHHHHcCCeEec
Q 038810 121 EDAINFYKKFGFDITD 136 (164)
Q Consensus 121 ~~~~~~~~~~GF~~~~ 136 (164)
.+|+.||+++||+...
T Consensus 12 ~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 12 AKSLDFYRRLGFDFPE 27 (122)
T ss_pred HHHHHHHHHhCceecC
Confidence 4899999999998754
No 151
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=71.29 E-value=10 Score=23.12 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=35.7
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 86 PYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 86 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
|-||-|+|+++++.+.+.+.+ .+.+...-.|.-+-.-..|.|-..-.+
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~gAT 53 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEGAT 53 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCccc
Confidence 458999999999988887654 355666666778888888888755443
No 152
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.75 E-value=12 Score=22.01 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=14.0
Q ss_pred hHHHHHHHHcCCeEec
Q 038810 121 EDAINFYKKFGFDITD 136 (164)
Q Consensus 121 ~~~~~~~~~~GF~~~~ 136 (164)
.+|+.||+.+||+...
T Consensus 12 ~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 12 EKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 5899999999998764
No 153
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=64.94 E-value=14 Score=22.55 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=27.7
Q ss_pred eCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCC
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNN 120 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n 120 (164)
--..|+|+|+...+++.+-+.+.+. ..+.+.+...+++
T Consensus 12 Cmq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 12 CMQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eeeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 3467999999999999988888766 3344666555544
No 154
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=64.86 E-value=25 Score=20.38 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=34.2
Q ss_pred EEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCCh
Q 038810 75 CVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNE 121 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~ 121 (164)
..++..+.|...-++.|++..+...+.+. ...+...+.++|+
T Consensus 33 vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n~ 74 (98)
T cd04263 33 VATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDDE 74 (98)
T ss_pred CEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCCC
Confidence 77899999999999999999999887765 3366677777765
No 155
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=64.59 E-value=20 Score=24.23 Aligned_cols=49 Identities=12% Similarity=0.319 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHhc--CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 91 GIGTKLLNHVLDLCAKQ--NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
|+|..++..+++...+. ++.++.+.....-...+.+..+++|....+.-
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETI 143 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeee
Confidence 88999999999888766 56667666554445678888899999887653
No 156
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=64.47 E-value=25 Score=22.78 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
|+.|+.+..+.++. .+..+++.+.+..+....+.++.|+..+.+...
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~ 72 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE 72 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC
Confidence 57888888888877 688999999999999999999999888877653
No 157
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.07 E-value=26 Score=20.79 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEec
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITD 136 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~ 136 (164)
....+..+++.+.+.|+..+++.....+..+.+..++.|.+..+
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEe
Confidence 34556677777777899999999989999999999999998875
No 158
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=62.92 E-value=2 Score=33.88 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred hHHHHHhhcC-ceEEEEEeCCc-EEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcC-CcEEE
Q 038810 37 KYYSDALASG-EFTKLAYYSDI-CVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQN-ISEVY 113 (164)
Q Consensus 37 ~~~~~~~~~~-~~~~~~~~~~~-~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~ 113 (164)
+.+.....+. ...+....+++ +||..+..+.+..+ ...+..-+|.-+-|-+|+|+.++.++.++.+..+ +..+-
T Consensus 408 Eyi~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~---f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~l 484 (720)
T KOG1472|consen 408 EYISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKG---FTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYAL 484 (720)
T ss_pred HHHHhhccccccccceeeccccccccccccCcCcccC---CcceeeccccCcccccccCcCchhhHHHHhhccchHHHHH
Confidence 4444444333 33344444444 89988888777664 4567777899999999999999999999988764 33222
Q ss_pred EEEecCChHHHHHHHHcCCeEecceec
Q 038810 114 LHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 114 ~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
.. .++ .++..+++.||...-.+..
T Consensus 485 ty--ad~-~aigyfkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 485 TY--ADE-GAIGYFKKQGFSKEIKFEK 508 (720)
T ss_pred Hh--hhh-cccccccCccchhhccccc
Confidence 22 222 6788889999977665554
No 159
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=62.89 E-value=50 Score=23.22 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=41.5
Q ss_pred EEEEEEeeeCcccccCC--hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 75 CVYIMTLGVLAPYRGLG--IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~G--ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
.+.+.++.-++++-+.| +-...+..-+..+++.|+..+.+...+..+.-..+.-++|+-...+...
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 45666666666665544 3456677777788999999999977777777888888999987766543
No 160
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.59 E-value=7.3 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=15.9
Q ss_pred hHHHHHHHHcCCeEeccee
Q 038810 121 EDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 121 ~~~~~~~~~~GF~~~~~~~ 139 (164)
.++++||+.+||+......
T Consensus 13 ~~s~~FY~~LGf~~~~~~~ 31 (113)
T cd08356 13 AESKQFYQALGFELEWEND 31 (113)
T ss_pred HHHHHHHHHhCCeeEecCC
Confidence 4899999999999876643
No 161
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=62.13 E-value=65 Score=24.21 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=62.2
Q ss_pred eEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCc--ccccCChHHHHHHHHHHHHHhcCCcEEEEEEe--------
Q 038810 48 FTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLA--PYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQ-------- 117 (164)
Q Consensus 48 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~--~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~-------- 117 (164)
..+.+..+++.|+.+++.......+....++. =.| +|=++.+-..++..+..+++..++-.+.+...
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~~~~~~~~p---rGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~ 117 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPLGFYTYYIP---RGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDL 117 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccCCceEEEec---CCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccC
Confidence 34566677777666666555444322222221 134 88888888889999999988765544433211
Q ss_pred -------cCChHHHHHHHHcCCeEecceeccccccC
Q 038810 118 -------TNNEDAINFYKKFGFDITDTIKNYYTNIT 146 (164)
Q Consensus 118 -------~~n~~~~~~~~~~GF~~~~~~~~~~~~~~ 146 (164)
..|.+.++.+.++|++-.+-...+-...+
T Consensus 118 ~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~~iq 153 (418)
T COG2348 118 GGEIIENYNNLAIIKLLKDLGYKHSGFTKGLDDSIQ 153 (418)
T ss_pred CCccccCcchHHHHHHHHHhhhhhcCcccccCcccc
Confidence 35678899999999999888776655444
No 162
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=61.31 E-value=13 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=15.8
Q ss_pred hHHHHHHHHcCCeEeccee
Q 038810 121 EDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 121 ~~~~~~~~~~GF~~~~~~~ 139 (164)
..+++||.++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 5899999999998876554
No 163
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.47 E-value=26 Score=21.26 Aligned_cols=18 Identities=22% Similarity=0.643 Sum_probs=14.0
Q ss_pred hHHHHHHHH-cCCeEecce
Q 038810 121 EDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~ 138 (164)
..|++||++ +||+.....
T Consensus 14 erSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 14 NKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred HHHHHHHHHhcCCEEEeee
Confidence 589999965 899876533
No 164
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=55.28 E-value=21 Score=24.37 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEe---cCChHHHHHHHHcCCeEecce
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQ---TNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~---~~n~~~~~~~~~~GF~~~~~~ 138 (164)
..-..++.+-++..|+++|.+.+. .-|.....||++.||+.....
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 455556667777779999988654 355688999999999987753
No 165
>PRK10150 beta-D-glucuronidase; Provisional
Probab=55.25 E-value=1e+02 Score=24.34 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred EEEEEEeeeCcccc--cCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 75 CVYIMTLGVLAPYR--GLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 75 ~~~i~~~~v~~~~r--g~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
-+.+.++..+++.- |.++....+..-++.+++.|++.+.+...+..+....+.-++|+-...+..
T Consensus 291 pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 291 PFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred EEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 56677777776654 444556666677778899999999997767667778888899998877664
No 166
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.88 E-value=81 Score=23.01 Aligned_cols=117 Identities=8% Similarity=-0.043 Sum_probs=67.4
Q ss_pred ccCcccHHHHHHHHHhcCCCCCCh-----hHHHHHhhc---CceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeC
Q 038810 13 GVRDKNLMQLKKLNIALFPVRYND-----KYYSDALAS---GEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVL 84 (164)
Q Consensus 13 ~~~~~d~~~i~~l~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~ 84 (164)
.+++.+++.+..+..+.....|.. .++...-+. .-..+++..+|++||.+......+.-- .-+.+.+.=+
T Consensus 224 ~lte~~wd~f~~fY~dT~~~~wg~pYLtr~Ff~~lge~m~~~vllv~A~r~g~~iaga~~lig~d~LY--GR~WG~ied~ 301 (387)
T COG3146 224 DLTEAIWDAFFAFYMDTGSRKWGRPYLTRPFFSLLGERMADDVLLVMAKRGGRPIAGAFNLIGGDTLY--GRYWGCIEDH 301 (387)
T ss_pred cCCHHHHHHHHHHHHhhcccccCCchhhHHHHHHHHHhhhhhEEEEEeccCCccceEEEEeecCceec--cccccccccC
Confidence 356777888888888777655554 444433333 334556778999988766555443210 0112222222
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceecc
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNY 141 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~ 141 (164)
| .. --.....+.+++|-+.|+.++.....-.++ ...||.++.+...+
T Consensus 302 p---~L-HFE~CYyQ~Id~aI~~gl~~feaGAqGeHK------laRGf~pv~~~SaH 348 (387)
T COG3146 302 P---FL-HFEVCYYQAIDFAIAEGLQRFEAGAQGEHK------LARGFPPVATYSAH 348 (387)
T ss_pred C---cc-hhHHHHhhHHHHHHHhCCceecCCCCcchh------hhcCCCcccchhhH
Confidence 2 11 124556678899998898877665444332 24588887766543
No 167
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=54.61 E-value=9.3 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=14.5
Q ss_pred EEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCCh
Q 038810 52 AYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGI 92 (164)
Q Consensus 52 ~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gi 92 (164)
+.++|++||=..+........ .+..-.+.+.|||||+
T Consensus 320 ~lehGQ~vgrLvyE~m~~~P~----~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 320 ILEHGQIVGRLVYERMAERPE----RLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EEETT-EEEEEEEEEBSS--------TTSS-----------
T ss_pred eeeCCcEEEEEEehhhccCcc----ccccccccccchhhhh
Confidence 346899999888776655422 3445557899999987
No 168
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=53.74 E-value=25 Score=23.03 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=16.4
Q ss_pred ceEEEEEeCCcEEEEEEeEeeec
Q 038810 47 EFTKLAYYSDICVGAIACRLEKK 69 (164)
Q Consensus 47 ~~~~~~~~~~~~vG~~~~~~~~~ 69 (164)
..+.++..+|+.+|+..+..+..
T Consensus 163 d~viVv~~ng~~vGVg~a~~~~~ 185 (202)
T COG5270 163 DEVIVVSENGRVVGVGIAKKSYE 185 (202)
T ss_pred CeEEEEecCCEEEEEEEEecCHH
Confidence 45666777888888877766554
No 169
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.68 E-value=32 Score=23.15 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHhcCCcEEEEE---EecCChHHHHHHHHcCCeEecce
Q 038810 102 DLCAKQNISEVYLH---VQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 102 ~~~~~~~~~~i~~~---~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
+-.+..|.+++.+. +.+-|.....|+++.||+.....
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 33445566777664 45688899999999999987653
No 170
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=52.36 E-value=24 Score=22.39 Aligned_cols=42 Identities=5% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEEE-Ee---cCChHHHHHHHHcCCeEecce
Q 038810 97 LNHVLDLCAKQNISEVYLH-VQ---TNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~-~~---~~n~~~~~~~~~~GF~~~~~~ 138 (164)
++.++++++..|++++.+- +. ..-....+++++.||+..+..
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5678889999999988763 22 122234567789999877654
No 171
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=51.82 E-value=49 Score=19.55 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=28.2
Q ss_pred eCcccccCChHHHHHHHHHHHHHh-cCCcEEEEEEecCChHHHHHHHH---cCCeEecceeccccccC---CCceeEEee
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAK-QNISEVYLHVQTNNEDAINFYKK---FGFDITDTIKNYYTNIT---PPDCYVLTK 155 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~---~GF~~~~~~~~~~~~~~---~~~~~~~~k 155 (164)
+.+..-++|. +.-+-++++.|.+ .++..+.+....+.+....+-+. .||+.+..-. +..+. ..+.+.|..
T Consensus 30 ip~~~~~~~~-K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~~--~~~~~~~~s~~~lfm~~ 106 (108)
T PF02100_consen 30 IPSSALGQGS-KESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPGH--PSVPPDITSPDWLFMGY 106 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE------SS-SS----S--EEEEE
T ss_pred ECCccccccc-HHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCCC--CCCCCcCCCCCEEEEEE
Confidence 4555555554 5555577788865 48999999988877665555444 5887776542 22222 346666655
Q ss_pred e
Q 038810 156 F 156 (164)
Q Consensus 156 ~ 156 (164)
.
T Consensus 107 e 107 (108)
T PF02100_consen 107 E 107 (108)
T ss_dssp -
T ss_pred E
Confidence 3
No 172
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=50.18 E-value=26 Score=20.27 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=18.3
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
..+.+.+.. =..+.+||.+ +||+.....
T Consensus 3 ~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 3 HHVTLITRD-AQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred ccEEEEcCC-hhHhHHHHHHccCCEEeeeE
Confidence 344444433 2489999986 799877554
No 173
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=49.88 E-value=18 Score=20.84 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=18.2
Q ss_pred cEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 110 SEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
..+.+.+.. =.++.+||..+||+....
T Consensus 4 ~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 4 DHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 344444432 248999999999988654
No 174
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=49.16 E-value=17 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=17.3
Q ss_pred EEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 111 EVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 111 ~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
.+.+.|.. =.++.+||..+||+....
T Consensus 6 hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 6 HVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 34444332 248999999999987543
No 175
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=48.25 E-value=64 Score=21.22 Aligned_cols=48 Identities=10% Similarity=0.280 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEEEEecCC--hHHHHHHHHcCCeEecc
Q 038810 90 LGIGTKLLNHVLDLCAKQNISEVYLHVQTNN--EDAINFYKKFGFDITDT 137 (164)
Q Consensus 90 ~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n--~~~~~~~~~~GF~~~~~ 137 (164)
.-.-..+++.+++.+++.|...+.+.-.... ......++..||.....
T Consensus 18 ~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 18 ATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 3344689999999999999876666555443 37888999999987754
No 176
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=47.93 E-value=25 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 111 EVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 111 ~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
.+.+.|. +=.++.+||++ +||+.....
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 3444443 33589999999 999887644
No 177
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=47.51 E-value=11 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 108 NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
|+..+...+... ..+..++.++||+.++..+
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~hr 39 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARHR 39 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCEC
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEecC
Confidence 566777666553 4678889999999998764
No 178
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=45.97 E-value=9.3 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=9.9
Q ss_pred CcccccCChHHHH
Q 038810 84 LAPYRGLGIGTKL 96 (164)
Q Consensus 84 ~~~~rg~Gig~~l 96 (164)
+|+||++.+++.|
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 6888888887654
No 179
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=45.94 E-value=25 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=18.5
Q ss_pred CCcEEEEEEecCChHHHHHHHH-cCCeEe
Q 038810 108 NISEVYLHVQTNNEDAINFYKK-FGFDIT 135 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~-~GF~~~ 135 (164)
++..+.+.|..- .+|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V~Dl-e~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPDL-DAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCCH-HHHHHHHHHhcCCEEE
Confidence 345555555433 489999987 899775
No 180
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=44.64 E-value=24 Score=20.40 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=21.0
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEeccee
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~~ 139 (164)
..+.+.+..- ..+..||.+ +||+......
T Consensus 3 ~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 3 DHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 4455544443 489999998 7999988776
No 181
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.23 E-value=33 Score=19.78 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=20.7
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEeccee
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~~ 139 (164)
+..+.+.+. +=.++.+||++ +||.......
T Consensus 4 l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 4 IDHVVLTVA-DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred cceEEEEec-CHHHHHHHHHHHhCceeecccc
Confidence 455655553 33489999998 8998876543
No 182
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=44.13 E-value=18 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=15.6
Q ss_pred hHHHHHHHHcCCeEeccee
Q 038810 121 EDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 121 ~~~~~~~~~~GF~~~~~~~ 139 (164)
.++..||.++||+.-..+.
T Consensus 15 ~~S~~Fy~alGfk~Npq~s 33 (133)
T COG3607 15 EASKAFYTALGFKFNPQFS 33 (133)
T ss_pred HHHHHHHHHhCcccCCCcc
Confidence 4899999999998766554
No 183
>PRK14968 putative methyltransferase; Provisional
Probab=44.10 E-value=76 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 95 KLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 95 ~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
.+++.+...++..|.-.+.......+.....+..+.||+.......
T Consensus 129 ~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 129 RFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 4555555655555533232223334566888999999987765543
No 184
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=43.96 E-value=82 Score=19.91 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=37.9
Q ss_pred ChHH-HHHHHHHHHHHhcCCcEEEEEE-----------ecCChHHHHHHHHcCCeEeccee
Q 038810 91 GIGT-KLLNHVLDLCAKQNISEVYLHV-----------QTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 91 Gig~-~l~~~~~~~~~~~~~~~i~~~~-----------~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
-++. ...+.+.+.+.+.|+..+.+.+ .+....+++-..+.|+.......
T Consensus 71 pyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~D 131 (149)
T PTZ00129 71 PYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIED 131 (149)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 3444 4556677788999999999988 35666899999999998877654
No 185
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.35 E-value=89 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.493 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCC-----------hHHHHHHHHcCCe
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNN-----------EDAINFYKKFGFD 133 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n-----------~~~~~~~~~~GF~ 133 (164)
..-+..+.++++++|+. |.+.+.... ....+.|++.|-.
T Consensus 72 ~~dl~elv~Ya~~KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~ 121 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVK 121 (273)
T ss_dssp T--HHHHHHHHHHTT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEE
T ss_pred ccCHHHHHHHHHHcCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCC
Confidence 34555666666666654 334333332 3445555555543
No 186
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=42.65 E-value=37 Score=19.54 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=19.8
Q ss_pred CCcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 108 NISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
++..+.+.+.. =.++.+||.+ +||+....
T Consensus 3 ~~~hi~l~v~d-~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSD-YEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCC-HHHHHHHHHHhcCCEEeee
Confidence 45566666643 3488999985 99987643
No 187
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=42.42 E-value=83 Score=19.51 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
..=++.+++++++.| +.+.+--++++-.++.++-||.+......
T Consensus 22 ~~~~r~ml~~ak~~g---~~~pvc~D~~A~~k~lkr~gv~~~egl~t 65 (142)
T PF11633_consen 22 SWNFRAMLQHAKETG---LLCPVCIDYPAFCKTLKRKGVDPKEGLQT 65 (142)
T ss_dssp ---CHHHHHHHHHHT----EEEEETT-HHHHHHHHHTTS---SEEEE
T ss_pred ehhHHHHHHHHHhcC---cEEEEEeccHHHHHHHhccCcccccceEE
Confidence 344556777777766 34556677889999999988887766553
No 188
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=42.33 E-value=1e+02 Score=20.42 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=30.4
Q ss_pred EeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 80 TLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 80 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
.+-|+|+++|..+..+.--.+.....+.-+....+.+..
T Consensus 144 hFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~s~ 182 (196)
T PF04555_consen 144 HFPVDPEFKGASYLKRYEILCERLVQERLYTAACLITSP 182 (196)
T ss_pred CCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEEec
Confidence 456999999999999888777777777777766665544
No 189
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.23 E-value=46 Score=22.71 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=29.6
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567777899999999999999999999888765
No 190
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=40.86 E-value=47 Score=22.61 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566788899999999999999999999888765
No 191
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=40.44 E-value=71 Score=18.17 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEe
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~ 135 (164)
|-.++..+.+.+++.|.... ...-++...++++..|+...
T Consensus 60 gl~~L~~~~~~~~~~~~~~~---l~~~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 60 GLGVLLGRYKQVRRVGGQLV---LVSVSPRVARLLDITGLLRI 99 (108)
T ss_pred cHHHHHHHHHHHHhcCCEEE---EEeCCHHHHHHHHHhChhhe
Confidence 44566667777777775522 22334588999999998764
No 192
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.27 E-value=43 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=29.5
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+-.|..-+..++.+|.+.|++.+.+++..
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777899999999999999999999998877
No 193
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.82 E-value=58 Score=18.95 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEe
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~ 135 (164)
|-.++..+.+.++.+|..-..+.+ ++...+.+++.||...
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~~---~~~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVGL---NPDVRRILERSGLIDF 104 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESH---HHHHHHHHHHTTGHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCChh
Confidence 456777777888888766443333 4588889999998643
No 194
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=38.15 E-value=1.2e+02 Score=20.86 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccc
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYY 142 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~ 142 (164)
|+-|+.+..+.+.+.|..++++-+. ++.-...-+++|++.+-+...+-
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVATD--DERIAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCEEEecCCCCC
Confidence 5688999999998888887766654 46777888899998887776553
No 195
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.53 E-value=43 Score=19.47 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=19.6
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEeccee
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~~ 139 (164)
..+.+.+..- .++.+||.+ +||.......
T Consensus 4 ~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~~ 33 (125)
T cd07255 4 GAVTLRVADL-ERSLAFYQDVLGLEVLERTD 33 (125)
T ss_pred EEEEEEECCH-HHHHHHHHhccCcEEEEcCC
Confidence 3455555432 478999986 8999887643
No 196
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=37.37 E-value=41 Score=19.56 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=18.2
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
..+.+.+.. =.++.+||.+ +||+.....
T Consensus 6 ~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 6 GHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 344444433 2489999986 899876543
No 197
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=37.26 E-value=38 Score=19.01 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=15.8
Q ss_pred hHHHHHHHH-cCCeEeccee
Q 038810 121 EDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~~ 139 (164)
..+.+||++ +||+......
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 489999998 9999988544
No 198
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=37.15 E-value=12 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=18.5
Q ss_pred cccCChHHHHHHHHHHHHHhcCCc
Q 038810 87 YRGLGIGTKLLNHVLDLCAKQNIS 110 (164)
Q Consensus 87 ~rg~Gig~~l~~~~~~~~~~~~~~ 110 (164)
-|++|+|.++++.+.+.++..|+.
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~Gy~ 51 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLGYR 51 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT--
T ss_pred hcccchHHHHHHHHHHHhhhcCCC
Confidence 477899999999999999888743
No 199
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=37.05 E-value=19 Score=14.63 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=9.1
Q ss_pred EeccCcccHHHHHHH
Q 038810 11 LDGVRDKNLMQLKKL 25 (164)
Q Consensus 11 ir~~~~~d~~~i~~l 25 (164)
+-|++++|+.++.++
T Consensus 7 mmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 7 MMPMSPDDYDELERM 21 (23)
T ss_dssp ---S-HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHh
Confidence 467889999888765
No 200
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=36.37 E-value=39 Score=20.77 Aligned_cols=29 Identities=17% Similarity=0.490 Sum_probs=19.3
Q ss_pred CCcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 108 NISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
++..+.+.+..- .++.+||+. +||+....
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 445555555433 489999986 89987543
No 201
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=36.25 E-value=50 Score=18.84 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=20.0
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEeccee
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~~ 139 (164)
..+.+.+.. =.+++.||.. +||.......
T Consensus 4 ~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 4 HHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred EEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 344444444 3489999997 9999987654
No 202
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=36.03 E-value=55 Score=18.86 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.2
Q ss_pred EEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 111 EVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 111 ~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
.+.+.+.. =.++++||++ +||+....
T Consensus 4 Hi~l~v~d-l~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 4 HVAIWTKD-LERMKAFYVTYFGATSNEK 30 (125)
T ss_pred EEEEEecC-HHHHHHHHHHHhCCEeece
Confidence 44455443 2489999998 79987543
No 203
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=35.71 E-value=1e+02 Score=24.26 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
..+++.+.+.+++.|...-.|.....++....++..+||.....-.
T Consensus 481 ~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~ 526 (565)
T TIGR01417 481 LRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSA 526 (565)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEECh
Confidence 3578888888888887755555667888999999999998876543
No 204
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=35.36 E-value=28 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=18.4
Q ss_pred eeeCcccccCChHHHHHHHHHH
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLD 102 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~ 102 (164)
+.++|+++|.-|.+.|.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 3489999999999888887766
No 205
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=35.28 E-value=50 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=27.7
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+.-|..-+..+.++|.+.|++.+.+++..
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS 48 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFS 48 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3456677788999999999999999999998776
No 206
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.03 E-value=64 Score=22.07 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=29.3
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS 57 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFS 57 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4566777899999999999999999999888775
No 207
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.86 E-value=59 Score=22.58 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.2
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566777899999999999999999999888765
No 208
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.76 E-value=67 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=29.2
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS 62 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5556777899999999999999999999888765
No 209
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=34.71 E-value=37 Score=22.71 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEec
Q 038810 90 LGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITD 136 (164)
Q Consensus 90 ~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~ 136 (164)
+|||..-.+.++-++.++- ...++ .-+.+++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp----~FVvD---~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP----VFVVD---KYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc----ccchh---HHHHHHHHHhcccccc
Confidence 7999999999999998652 22222 3789999999998774
No 210
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=34.63 E-value=53 Score=19.12 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=17.6
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
..+.+.|..- .+|.+||.. +||+....
T Consensus 4 ~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 4 GYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 3444544432 378999977 79987544
No 211
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=34.55 E-value=66 Score=21.80 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++..
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5556777899999999999999999999888765
No 212
>COG4866 Uncharacterized conserved protein [Function unknown]
Probab=34.50 E-value=1.6e+02 Score=20.60 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=47.1
Q ss_pred EEEeccCcccHHHHHHHHHhcCCCCCC---------hhHHHHHhhc----CceEEEEEeCCcEEEEEEeEeeecCCCeeE
Q 038810 9 ISLDGVRDKNLMQLKKLNIALFPVRYN---------DKYYSDALAS----GEFTKLAYYSDICVGAIACRLEKKEGGAIC 75 (164)
Q Consensus 9 ~~ir~~~~~d~~~i~~l~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 75 (164)
....++++.++.++..+.+..+..... ...+...++. +....+...+++++|+.....-... .
T Consensus 152 ~~yE~Is~~nl~EV~~FlKkW~e~~~~~s~~~L~nen~~il~~~e~~~~l~lkgllirv~neI~aftL~e~ln~~----~ 227 (294)
T COG4866 152 FVYEKISPQNLKEVLEFLKKWFELESQTSDIGLINENKGILSVLENYESLDLKGLLIRVNNEIVAFTLGEVLNEE----S 227 (294)
T ss_pred ceeeecCcccHHHHHHHHHHHHHHhcccccceeecccHHHHHHHhhccccCccceEEEEccEEEEEEEEEeeCCc----e
Confidence 557788899999988887765431111 1222222222 3335667789999999888776554 4
Q ss_pred EEEEEeeeCccccc
Q 038810 76 VYIMTLGVLAPYRG 89 (164)
Q Consensus 76 ~~i~~~~v~~~~rg 89 (164)
+.|+-=-.+++++|
T Consensus 228 alIhiEk~l~d~~G 241 (294)
T COG4866 228 ALIHIEKALTDIAG 241 (294)
T ss_pred eeeehhhcchHHHH
Confidence 44544445677776
No 213
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=34.44 E-value=41 Score=19.17 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=13.4
Q ss_pred hHHHHHHHH-cCCeEec
Q 038810 121 EDAINFYKK-FGFDITD 136 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~ 136 (164)
..+..||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 488999997 9999763
No 214
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.02 E-value=60 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=28.8
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|+..+.+++.+
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS 47 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 47 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4456777889999999999999999999888765
No 215
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=33.99 E-value=72 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
.++++.+++.+.+.|.+...|.-...++....++..+|....+..+.
T Consensus 234 l~li~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 234 LRLIKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 47888889999999977666666667999999999999988876554
No 216
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=33.95 E-value=1.3e+02 Score=19.44 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=23.9
Q ss_pred HHHHhcCC---CCCChhHHHHHhhcCceEEEEEeCCcEEEEEE
Q 038810 24 KLNIALFP---VRYNDKYYSDALASGEFTKLAYYSDICVGAIA 63 (164)
Q Consensus 24 ~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 63 (164)
++..+.|| ...+-+.+...+....-+++ .++|++||.+.
T Consensus 134 ~vM~e~fP~Vs~~~~l~vI~~LL~~~~AVlV-~e~G~~vGIIT 175 (187)
T COG3620 134 EVMGEPFPTVSPDESLNVISQLLEEHPAVLV-VENGKVVGIIT 175 (187)
T ss_pred HHhcCCCCcCCCCCCHHHHHHHHhhCCeEEE-EeCCceEEEEe
Confidence 44456666 23344566666666544444 49999999764
No 217
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=33.79 E-value=32 Score=24.78 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=29.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceeccccc
Q 038810 89 GLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTN 144 (164)
Q Consensus 89 g~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~ 144 (164)
|.|--+.-.+.+..++.. ..+++ ..+.-+.-..+|++.||..+.+.+-|-.+
T Consensus 108 GTGAl~~~A~Fl~~~~~~---~~VY~-SnPTW~nH~~if~~aGf~tv~~Y~yWd~~ 159 (410)
T KOG1412|consen 108 GTGALRIAADFLATFYNK---NTVYV-SNPTWENHHAIFEKAGFTTVATYPYWDAE 159 (410)
T ss_pred ccchhhhhHHHHHHhccc---ceeEe-cCCchhHHHHHHHHcCCceeeeeeeecCC
Confidence 444434444444444432 22332 23333456788999999999988765333
No 218
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=33.54 E-value=1e+02 Score=20.45 Aligned_cols=51 Identities=27% Similarity=0.457 Sum_probs=36.4
Q ss_pred eeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
+.-.+++|.-|+|.+++. ..|+..+.+.+. |+.-..-.+..|-....+...
T Consensus 120 lg~~~D~R~ygigAqIL~-------dLGI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 120 LGFPADERDYGIGAQILK-------DLGIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hcCCchHHHHHHHHHHHH-------HcCCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 335678888899888774 458888888865 666677777788666665543
No 219
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=32.79 E-value=47 Score=19.09 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=19.1
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
+..+.+.+.. =..+.+||.+ +||+.....
T Consensus 4 i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 4 LRGVGLGVPD-LAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeEEEEecCC-HHHHHHHHHhCcCcEEEEec
Confidence 3445454432 2489999998 899876544
No 220
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=32.54 E-value=68 Score=23.16 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=29.4
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+-.|...+..++++|.+.|++.+.+++..
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5556888899999999999999999999888765
No 221
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=32.48 E-value=57 Score=18.57 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=15.1
Q ss_pred hHHHHHHHH-cCCeEecce
Q 038810 121 EDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~ 138 (164)
.++.+||.+ +||......
T Consensus 14 ~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 14 ERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred HHHHHHHHhccCcEEEeec
Confidence 489999999 899987654
No 222
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=32.37 E-value=58 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=19.1
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
+..+.+.|..- ..+..||++ +||+.....
T Consensus 2 l~HI~i~V~Dl-e~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 2 LHGVTLTVRDP-EATAAFLTDVLGFREVGEE 31 (157)
T ss_pred cccEEEEeCCH-HHHHHHHHHhcCCEEEeee
Confidence 34455554433 489999976 699877654
No 223
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.30 E-value=85 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.6
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|++.+.+++..
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS 68 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFS 68 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 4455777789999999999999999999888765
No 224
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=32.28 E-value=72 Score=19.69 Aligned_cols=43 Identities=14% Similarity=0.448 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecc
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDT 137 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~ 137 (164)
|+.|++++++.+.+.++..+++.+.. ......+.+.+...+..
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEe
Confidence 45788999999988888888887776 33344455666655443
No 225
>PRK11478 putative lyase; Provisional
Probab=32.16 E-value=53 Score=19.23 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=17.5
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEec
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITD 136 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~ 136 (164)
+..+.+.|.. =..+.+||.+ +||+...
T Consensus 7 i~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIATD-YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEcCC-HHHHHHHHHHHhCCEecc
Confidence 3445454433 3488999975 8999753
No 226
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.90 E-value=73 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.3
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566777899999999999999999999888775
No 227
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=31.78 E-value=52 Score=19.01 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=18.9
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
+..+.+.+.. =..+.+||.+ +||+.....
T Consensus 5 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 5 LGHVELRVTD-LEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeEEEEEcCC-HHHHHHHHHhccCCEEeccC
Confidence 3444455432 2489999987 899876543
No 228
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=31.77 E-value=45 Score=19.32 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 111 EVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 111 ~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
.+.+.+.. =.++..||.+ +||+.....
T Consensus 3 hv~l~v~d-~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 3 HIGIAVPD-LEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred EEEEEeCC-HHHHHHHHHHhhCCCCcccc
Confidence 45555532 3489999998 999987644
No 229
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=31.65 E-value=1.1e+02 Score=20.13 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCe
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFD 133 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~ 133 (164)
|+.|+.+.++.+.+.++..+.+.+......-.....+.|..
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~ 65 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVE 65 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcE
Confidence 57888999999888888888777766544444444444554
No 230
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=31.59 E-value=2.3e+02 Score=21.48 Aligned_cols=74 Identities=18% Similarity=0.095 Sum_probs=44.7
Q ss_pred CcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecC----ChHHHHHHH-Hc
Q 038810 56 DICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTN----NEDAINFYK-KF 130 (164)
Q Consensus 56 ~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~----n~~~~~~~~-~~ 130 (164)
.++++.+.+...... ...-..-+-+++||+---.-.|--+++.+|+++|+.+-.+.-.+. +.....+|+ |.
T Consensus 301 ~~i~lAg~l~~~~~~----~~~yl~ggs~~~y~~~~~py~lqw~~i~~A~k~Gi~~ynf~GI~~~~d~~~~~yGv~~FK~ 376 (418)
T COG2348 301 EVIVLAGILFLYYGT----EVVYLYGGSSDEYNKFMAPYLLQWEAIKYAKKRGIKWYNFYGIPGDFDESSEDYGVYRFKK 376 (418)
T ss_pred cceeeeeeEEEEcce----EEEEEeccCcHHHHhhchHHHHHHHHHHHHHHcCCceeeecCCCCCCCCCcccchhHHhhh
Confidence 455555555544443 333334456889998755556666799999999998887654432 223335655 66
Q ss_pred CCe
Q 038810 131 GFD 133 (164)
Q Consensus 131 GF~ 133 (164)
||-
T Consensus 377 gFn 379 (418)
T COG2348 377 GFN 379 (418)
T ss_pred cCC
Confidence 663
No 231
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=31.56 E-value=46 Score=18.97 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=10.2
Q ss_pred eeeCcccccCChHHHHHHHHHHH
Q 038810 81 LGVLAPYRGLGIGTKLLNHVLDL 103 (164)
Q Consensus 81 ~~v~~~~rg~Gig~~l~~~~~~~ 103 (164)
+++||+.-|.-|+..+++.+...
T Consensus 65 iatD~D~EGe~Ia~~i~~~~~~~ 87 (100)
T PF01751_consen 65 IATDPDREGELIAWEIIELLGKN 87 (100)
T ss_dssp EEC-SSHHHHHHHHHHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHHHHHhHh
Confidence 33455555544444444444443
No 232
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.35 E-value=71 Score=22.01 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=29.2
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++.+|.+.|++.+.+++..
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS 68 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFS 68 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 4556777899999999999999999999988873
No 233
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.29 E-value=77 Score=21.83 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.0
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|++.+.+++..
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4556777899999999999999999999888765
No 234
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=31.26 E-value=1.9e+02 Score=20.36 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcC
Q 038810 91 GIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFG 131 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~G 131 (164)
.+|-.+...+++...+.|+..+++.+...-.....+.+.+|
T Consensus 247 ~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 247 EIGIEIAVELIRELLAEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 45656666667777777889999998877778888888877
No 235
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=31.08 E-value=98 Score=17.01 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEe
Q 038810 92 IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 92 ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~ 135 (164)
-|-.++..+.+.+.+.|.. +.+...++...++++..|+...
T Consensus 54 ~g~~~L~~l~~~~~~~g~~---v~i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGR---LVLVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hhHHHHHHHHHHHHHcCCe---EEEEcCCHHHHHHHHHhCccee
Confidence 3556777788888877755 3333334689999999997643
No 236
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.04 E-value=72 Score=18.61 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=19.1
Q ss_pred CcEEEEEEecCChHHHHHHHHc----CCeEecce
Q 038810 109 ISEVYLHVQTNNEDAINFYKKF----GFDITDTI 138 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~~----GF~~~~~~ 138 (164)
+..+.+.+. +=.++.+||++. ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 344555553 234889999885 99887653
No 237
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.99 E-value=69 Score=18.52 Aligned_cols=16 Identities=38% Similarity=0.901 Sum_probs=13.1
Q ss_pred hHHHHHHHH-cCCeEec
Q 038810 121 EDAINFYKK-FGFDITD 136 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~ 136 (164)
.++.+||++ +||....
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 12 EKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHhhCCeEEe
Confidence 489999988 7998753
No 238
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.92 E-value=78 Score=21.67 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=28.8
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
|...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777889999999999999999999888765
No 239
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=29.82 E-value=82 Score=18.62 Aligned_cols=19 Identities=37% Similarity=0.782 Sum_probs=14.8
Q ss_pred hHHHHHHHH-cCCeEeccee
Q 038810 121 EDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~~ 139 (164)
.++.+||.+ +||.......
T Consensus 13 ~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 13 EAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred HHHHHHHHHhcCCEEEeecc
Confidence 488999987 9998775543
No 240
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=29.80 E-value=72 Score=19.52 Aligned_cols=28 Identities=11% Similarity=0.369 Sum_probs=18.4
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
+..+.+.|.. =.++.+||++ +||+....
T Consensus 7 l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGED-IAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecCC-HHHHHHHHHHhcCCEEEEE
Confidence 3445555443 2489999987 89987554
No 241
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=29.35 E-value=27 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.851 Sum_probs=16.5
Q ss_pred EEEEEEecCChHHHHHHHHc
Q 038810 111 EVYLHVQTNNEDAINFYKKF 130 (164)
Q Consensus 111 ~i~~~~~~~n~~~~~~~~~~ 130 (164)
.+++.+++.+..|+..|.+.
T Consensus 19 ~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 19 NLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHhcCCCCcHHHHHHHHHH
Confidence 37899999999998888764
No 242
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.32 E-value=81 Score=22.22 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.1
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|++.+.+++..
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4445677788999999999999999999887665
No 243
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=29.23 E-value=52 Score=18.51 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=14.8
Q ss_pred hHHHHHHHH-cCCeEecce
Q 038810 121 EDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~ 138 (164)
..+.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 489999999 999976554
No 244
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.19 E-value=1.3e+02 Score=17.89 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHhcCCcEE---EEEEec---CChHHHHHH
Q 038810 91 GIGTKLLNHVLDLCAKQNISEV---YLHVQT---NNEDAINFY 127 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i---~~~~~~---~n~~~~~~~ 127 (164)
+|...+++.+.+.++++|..++ .+.+.. -++.+.+|.
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f~ 47 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFC 47 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 5788999999999988865544 444433 234555554
No 245
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=29.05 E-value=1.2e+02 Score=17.18 Aligned_cols=39 Identities=18% Similarity=0.048 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeE
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDI 134 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~ 134 (164)
|-.++..+.+.+++.|..-. ...-++...+.+++.|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~---l~~~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFV---LTGISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEE---EECCCHHHHHHHHHhCchh
Confidence 55666677777777775533 3333458889999999754
No 246
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=29.03 E-value=1.1e+02 Score=17.07 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
|-.++..+...+...|..-... .-++...+.+.+.||...-..
T Consensus 58 ~~~~L~~~~~~~~~~~~~~~l~---~~~~~~~~~l~~~g~~~~~~~ 100 (107)
T cd07042 58 AAEALEELVKDLRKRGVELYLA---GLNPQVRELLERAGLLDEIGE 100 (107)
T ss_pred HHHHHHHHHHHHHHCCCEEEEe---cCCHHHHHHHHHcCcHHHhCc
Confidence 4456666666777777553322 333488999999998755443
No 247
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=28.92 E-value=34 Score=18.90 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=18.2
Q ss_pred EeeeCcccccCChHHHHHHHHHH
Q 038810 80 TLGVLAPYRGLGIGTKLLNHVLD 102 (164)
Q Consensus 80 ~~~v~~~~rg~Gig~~l~~~~~~ 102 (164)
-+.++++..|+.+.+++.+.+..
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhcc
Confidence 45689999999888888877643
No 248
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.65 E-value=88 Score=21.58 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=29.0
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+--|..-+..++++|.+.|++.+.+++.+
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4456777889999999999999999999888775
No 249
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.45 E-value=95 Score=17.65 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=16.2
Q ss_pred cCChHHHHH--HHHHHHHHhcCCc
Q 038810 89 GLGIGTKLL--NHVLDLCAKQNIS 110 (164)
Q Consensus 89 g~Gig~~l~--~~~~~~~~~~~~~ 110 (164)
|-|+|+.++ ..+.+.+.++|++
T Consensus 10 gsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 10 GGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CCchhHHHHHHHHHHHHHHHCCCe
Confidence 578987666 5666777888875
No 250
>PF13289 SIR2_2: SIR2-like domain
Probab=28.42 E-value=1.4e+02 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=6.2
Q ss_pred hHHHHHHHHcCCe
Q 038810 121 EDAINFYKKFGFD 133 (164)
Q Consensus 121 ~~~~~~~~~~GF~ 133 (164)
.....++++.|.+
T Consensus 129 ~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 129 ENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHHHcCCE
Confidence 3444555555544
No 251
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.20 E-value=89 Score=19.68 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCC
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGF 132 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF 132 (164)
|+.|++++++.+...++..+.+.+...+......+...|.
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 5778888888887777777777766544333333444443
No 252
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=28.17 E-value=1.5e+02 Score=18.31 Aligned_cols=29 Identities=28% Similarity=0.668 Sum_probs=20.1
Q ss_pred CCcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 108 NISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
++..+.+.+. +=.++++||.. +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 4566666654 33588999987 89987543
No 253
>PRK10291 glyoxalase I; Provisional
Probab=28.04 E-value=66 Score=19.00 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=13.6
Q ss_pred hHHHHHHHH-cCCeEecc
Q 038810 121 EDAINFYKK-FGFDITDT 137 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~ 137 (164)
..++.||.+ +||+....
T Consensus 8 e~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 489999976 89987654
No 254
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=27.97 E-value=1e+02 Score=20.35 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHH
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAIN 125 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 125 (164)
|+.++.++++.+.+.|+..+.+.+.........
T Consensus 30 g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~ 62 (217)
T cd04197 30 NVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKE 62 (217)
T ss_pred CEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHH
Confidence 457999999999889999998887754433333
No 255
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=27.84 E-value=1.2e+02 Score=17.26 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=16.6
Q ss_pred EEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 112 VYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 112 i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
+.+.+. +=.++.+||.+ +||+....
T Consensus 4 v~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 4 TMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred EEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 334443 23489999987 59987654
No 256
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=27.64 E-value=1.3e+02 Score=17.19 Aligned_cols=20 Identities=40% Similarity=0.773 Sum_probs=15.2
Q ss_pred CChHHHHHHHH-cCCeEecce
Q 038810 119 NNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 119 ~n~~~~~~~~~-~GF~~~~~~ 138 (164)
+-..+.+||.+ +||+.....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 33588999985 899987654
No 257
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=27.54 E-value=1.3e+02 Score=20.84 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=36.3
Q ss_pred EEEEEeeeCcccccCChHHHHHHHHHHHH-HhcCCcEEEEEEecCC
Q 038810 76 VYIMTLGVLAPYRGLGIGTKLLNHVLDLC-AKQNISEVYLHVQTNN 120 (164)
Q Consensus 76 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~-~~~~~~~i~~~~~~~n 120 (164)
-|++..-+-|.|=..|++++-++...++. .+.|-+.+.+.....-
T Consensus 144 tYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAG 189 (259)
T COG0623 144 TYLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAG 189 (259)
T ss_pred EeccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeeccc
Confidence 45666778999999999999999999986 5558787887766544
No 258
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=27.44 E-value=67 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.644 Sum_probs=17.8
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEec
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITD 136 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~ 136 (164)
+..+.+.|.. =..+++||.+ +||+...
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 3445555443 2489999988 8998753
No 259
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=27.41 E-value=1.3e+02 Score=17.12 Aligned_cols=41 Identities=5% Similarity=-0.039 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEec
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITD 136 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~ 136 (164)
|-.++..+.+.+++.|..-..+. -++...+.++..|+...-
T Consensus 56 gi~~L~~~~~~~~~~g~~l~l~~---~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 56 GLGVILGRYKKIKNEGGEVIVCN---VSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhCCceEE
Confidence 34455566677777775533333 345889999999986543
No 260
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=27.13 E-value=1.7e+02 Score=19.09 Aligned_cols=31 Identities=10% Similarity=0.367 Sum_probs=19.3
Q ss_pred CCcEEEEEEecCC-hHHHHHHHH-cCCeEecce
Q 038810 108 NISEVYLHVQTNN-EDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 108 ~~~~i~~~~~~~n-~~~~~~~~~-~GF~~~~~~ 138 (164)
|+..-.+.....| ..|++||++ +||+.....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 3333333333333 489999975 899886664
No 261
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=26.77 E-value=99 Score=17.95 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=18.4
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
..+.+.+.. =..+.+||.+ +||+.....
T Consensus 3 ~hv~l~v~d-~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 3 NHITLAVSD-LERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred ceEEEEECC-HHHHHHHHHHhcCCEEEEec
Confidence 445555432 2489999987 899876543
No 262
>PRK07758 hypothetical protein; Provisional
Probab=26.71 E-value=85 Score=18.12 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHHHhcCC
Q 038810 90 LGIGTKLLNHVLDLCAKQNI 109 (164)
Q Consensus 90 ~Gig~~l~~~~~~~~~~~~~ 109 (164)
+|+|..-++.+.+...+.|.
T Consensus 73 knlGkKSL~EIkekL~E~GL 92 (95)
T PRK07758 73 HGMGPASLPKLRKALEESGL 92 (95)
T ss_pred cCCCHHHHHHHHHHHHHcCC
Confidence 68899999999988888764
No 263
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=26.41 E-value=84 Score=18.73 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.7
Q ss_pred CCcEEEEEEecCChHHHHHHHH-cCCeEec
Q 038810 108 NISEVYLHVQTNNEDAINFYKK-FGFDITD 136 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~-~GF~~~~ 136 (164)
++..+.+.|. +-..+++||.+ +||....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEE
Confidence 3455555553 33589999987 8997654
No 264
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.38 E-value=1.1e+02 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=27.0
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
.|+--|..-+..++++|.+.|++.+.+++..
T Consensus 51 ~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 51 QGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 6777788999999999999999999887764
No 265
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.05 E-value=90 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=28.7
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
+...|+-.|..-+..++++|.+.|+..+.+++..
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFS 121 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFS 121 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 4455667788999999999999999999988874
No 266
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=25.97 E-value=2.3e+02 Score=19.62 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEE-ecCChHHHHHHHHcCCeEe
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHV-QTNNEDAINFYKKFGFDIT 135 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~-~~~n~~~~~~~~~~GF~~~ 135 (164)
|+.++..-++...+.|+..+.+.+ .-.+.--..++.++.|...
T Consensus 30 gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~ 73 (239)
T COG1213 30 GREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAK 73 (239)
T ss_pred CeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCcceE
Confidence 678888888888888999888887 4444456677788888433
No 267
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.68 E-value=1e+02 Score=15.37 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.9
Q ss_pred cccccCChHHHHHHHHHHHHHhcC
Q 038810 85 APYRGLGIGTKLLNHVLDLCAKQN 108 (164)
Q Consensus 85 ~~~rg~Gig~~l~~~~~~~~~~~~ 108 (164)
.-||+--+|..|.+.+-+...+..
T Consensus 4 elYR~stlG~aL~dtLDeli~~~~ 27 (49)
T PF02268_consen 4 ELYRRSTLGIALTDTLDELIQEGK 27 (49)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcchHHHHHHHHHHHHHHcCC
Confidence 348999999999988888776543
No 268
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=25.25 E-value=1.7e+02 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=22.2
Q ss_pred HhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 105 AKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 105 ~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
+..|+..+.+.+. |+.-..-.+.+|.+.....+
T Consensus 324 ~dLGV~~irLLTN--np~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 324 KALGIEKVRLLTN--NPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHcCCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 3457777766654 56666677788888876654
No 269
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=25.10 E-value=1.6e+02 Score=17.90 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 108 NISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
+++++.+.+.+.|.....+-...||.......
T Consensus 123 nvdrlgiyinpnneevfalvrargfdkdalse 154 (192)
T PRK12303 123 NVDRLGIYINPNNEEVFALVRARGFDKDALSE 154 (192)
T ss_pred cchheeeeeCCCcHHHHHHHHHhcCCHHHHhh
Confidence 78899999999999999999999997665443
No 270
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.75 E-value=1.6e+02 Score=17.50 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHhcCCcE---EEEEEec---CChHHHHH
Q 038810 91 GIGTKLLNHVLDLCAKQNISE---VYLHVQT---NNEDAINF 126 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~---i~~~~~~---~n~~~~~~ 126 (164)
+|+..+++.+.+.+++.+..+ +.+.+.. -++.+..|
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f 46 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRVTLEIGELSCVNPSQLQF 46 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEccccccCHHHHHH
Confidence 678899999999988886555 4444433 23445554
No 271
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.58 E-value=1.7e+02 Score=17.59 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=36.2
Q ss_pred ChHH-HHHHHHHHHHHhcCCcEEEEEEec-----------CChHHHHHHHHcCCeEeccee
Q 038810 91 GIGT-KLLNHVLDLCAKQNISEVYLHVQT-----------NNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 91 Gig~-~l~~~~~~~~~~~~~~~i~~~~~~-----------~n~~~~~~~~~~GF~~~~~~~ 139 (164)
-++. ...+.+.+.+.+.|+..+.+.+.- ....+++-.++.|+.......
T Consensus 45 pyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~D 105 (114)
T TIGR03628 45 PYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 105 (114)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 3444 555668888899999999887754 445788889999998776543
No 272
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=24.44 E-value=2.2e+02 Score=18.85 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=39.1
Q ss_pred eeeEEEeccCcccHHHHHHHHHhcCCC-CCChhHHHHHhhc-Cce-EEEEE-e--CCcEEEEEEeEee
Q 038810 6 EVAISLDGVRDKNLMQLKKLNIALFPV-RYNDKYYSDALAS-GEF-TKLAY-Y--SDICVGAIACRLE 67 (164)
Q Consensus 6 ~~~~~ir~~~~~d~~~i~~l~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~-~--~~~~vG~~~~~~~ 67 (164)
+..+.+....+.|...+..+....+.. .+....+...+-. +.. ..+-. + ++.+.|++++-.-
T Consensus 4 ~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl 71 (194)
T PF13862_consen 4 NVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNL 71 (194)
T ss_pred EEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEc
Confidence 456888899999999999999999874 4555555555443 322 22222 1 3456666655443
No 273
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.44 E-value=1.8e+02 Score=17.86 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.7
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEE
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLH 115 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 115 (164)
+..++...++..+++.|.+.|+..+.-.
T Consensus 37 ~hp~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 37 RHPGLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 3455668999999999999998765443
No 274
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=24.41 E-value=2.8e+02 Score=23.19 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=52.8
Q ss_pred EEEEEEeeeCcc--cccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecceec
Q 038810 75 CVYIMTLGVLAP--YRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIKN 140 (164)
Q Consensus 75 ~~~i~~~~v~~~--~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~ 140 (164)
-+.+.++.-+++ .+|++.....+..-++.+++.|++.+.+.-.+.++.-..+.-++|+-...+...
T Consensus 299 pvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~ 366 (808)
T COG3250 299 PVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMI 366 (808)
T ss_pred EEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecch
Confidence 566777777665 566667778888889999999999999997787778888888999988877653
No 275
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.34 E-value=1.3e+02 Score=20.86 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=26.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 88 RGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 88 rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
.|+--|..-+..++++|.+.|+..+.+++..
T Consensus 46 ~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS 76 (251)
T PRK14830 46 AGHKAGMDTVKKITKAASELGVKVLTLYAFS 76 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 4666788899999999999999999887765
No 276
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=24.26 E-value=1.9e+02 Score=17.96 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=36.3
Q ss_pred ChHH-HHHHHHHHHHHhcCCcEEEEEEec-----------CChHHHHHHHHcCCeEeccee
Q 038810 91 GIGT-KLLNHVLDLCAKQNISEVYLHVQT-----------NNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 91 Gig~-~l~~~~~~~~~~~~~~~i~~~~~~-----------~n~~~~~~~~~~GF~~~~~~~ 139 (164)
-++. ...+.+.+.+.+.|+..+.+.+.- ....+++-.++.|+.......
T Consensus 52 pyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~D 112 (132)
T PRK09607 52 PYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 3444 455667778889999999887755 345788999999998776554
No 277
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.78 E-value=1e+02 Score=17.30 Aligned_cols=18 Identities=28% Similarity=0.947 Sum_probs=14.8
Q ss_pred hHHHHHHHH-cCCeEecce
Q 038810 121 EDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~~ 138 (164)
.++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 478999998 999987654
No 278
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=23.64 E-value=1.2e+02 Score=17.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=15.4
Q ss_pred cCChHHHHH--HHHHHHHHhcCCc
Q 038810 89 GLGIGTKLL--NHVLDLCAKQNIS 110 (164)
Q Consensus 89 g~Gig~~l~--~~~~~~~~~~~~~ 110 (164)
|.|+|+.++ ..+++.++++|++
T Consensus 9 G~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 9 GNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCC
Confidence 678887544 3466777888875
No 279
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.55 E-value=1.5e+02 Score=17.41 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=13.6
Q ss_pred hHHHHHHHH-cCCeEecc
Q 038810 121 EDAINFYKK-FGFDITDT 137 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~ 137 (164)
..+.+||.+ +||+....
T Consensus 18 ~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 18 AGATRFATDILGLQVAER 35 (124)
T ss_pred HHHHHHHHhccCceeccC
Confidence 489999988 79987544
No 280
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.52 E-value=1.5e+02 Score=16.95 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.6
Q ss_pred hHHHHHHHH-cCCeEecc
Q 038810 121 EDAINFYKK-FGFDITDT 137 (164)
Q Consensus 121 ~~~~~~~~~-~GF~~~~~ 137 (164)
.++..||.+ +||+....
T Consensus 13 ~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 13 AETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHhhCcEEEec
Confidence 488999975 99988765
No 281
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.37 E-value=1.7e+02 Score=17.25 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=34.0
Q ss_pred hHH-HHHHHHHHHHHhcCCcEEEEEEecCCh---HHHHHHHHcCCeEecce
Q 038810 92 IGT-KLLNHVLDLCAKQNISEVYLHVQTNNE---DAINFYKKFGFDITDTI 138 (164)
Q Consensus 92 ig~-~l~~~~~~~~~~~~~~~i~~~~~~~n~---~~~~~~~~~GF~~~~~~ 138 (164)
++. .+.+.+.+.+.+.|+..+.+.+.-.++ ++++.+.+.|+......
T Consensus 43 ~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~ 93 (110)
T PF00411_consen 43 YAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSIT 93 (110)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEE
Confidence 443 566677888888899999888776443 67777888888765544
No 282
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=23.18 E-value=99 Score=17.89 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=18.2
Q ss_pred cEEEEEEecCChHHHHHHHH-cCCeEecce
Q 038810 110 SEVYLHVQTNNEDAINFYKK-FGFDITDTI 138 (164)
Q Consensus 110 ~~i~~~~~~~n~~~~~~~~~-~GF~~~~~~ 138 (164)
..+.+.+.. =.++.+||.+ +||+.....
T Consensus 8 ~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 8 AHVELLTPK-PEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred eEEEEEeCC-HHHHHHHHHhCcCCEEEeec
Confidence 344444432 2489999987 699877653
No 283
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.00 E-value=1e+02 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=13.5
Q ss_pred ChHHHHHHHH-cCCeEec
Q 038810 120 NEDAINFYKK-FGFDITD 136 (164)
Q Consensus 120 n~~~~~~~~~-~GF~~~~ 136 (164)
-.++.+||+. +||+...
T Consensus 13 ~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 13 IEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred HHHHHHHHHHhcCCEEee
Confidence 3589999986 8998764
No 284
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=22.65 E-value=2.7e+02 Score=19.20 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=39.0
Q ss_pred EeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChH---HHHHHHHcCCeEeccee
Q 038810 80 TLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNED---AINFYKKFGFDITDTIK 139 (164)
Q Consensus 80 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~---~~~~~~~~GF~~~~~~~ 139 (164)
.++|.|-|-...-...++++++- .+..|+..+.+......+. ..+.|++.|+.......
T Consensus 4 ~vCv~pl~~~~~~~~~l~e~ie~-~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w~ 65 (285)
T PF01697_consen 4 VVCVSPLFGNEDDWLQLIEWIEY-HRLLGVDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPWP 65 (285)
T ss_pred EEEccchhcccccHHHHHHHHHH-HHHhCCCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEcc
Confidence 35566666654444556555544 4455999999987775554 45668899998876664
No 285
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=22.37 E-value=1.5e+02 Score=16.37 Aligned_cols=36 Identities=8% Similarity=0.188 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHc
Q 038810 95 KLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKF 130 (164)
Q Consensus 95 ~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 130 (164)
.++...+.+....|+..+++....+...+..+.+++
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 345566666677899988887766666667776664
No 286
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.10 E-value=2e+02 Score=17.46 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEE
Q 038810 91 GIGTKLLNHVLDLCAKQNISEVY 113 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i~ 113 (164)
+|...+++.+.+.+++.|..++.
T Consensus 5 si~~~il~~v~~~a~~~~~~rV~ 27 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEVT 27 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEE
Confidence 57888999999998888665553
No 287
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=21.78 E-value=1.9e+02 Score=17.26 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEeeeCcccccCChHHHHHHHHHHHHH
Q 038810 77 YIMTLGVLAPYRGLGIGTKLLNHVLDLCA 105 (164)
Q Consensus 77 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 105 (164)
+...+.++|++..||--..|-..+-...+
T Consensus 64 ~~~~i~IDP~~~~KGC~~TL~HEL~H~WQ 92 (141)
T PHA02456 64 FVGWIEIDPDYANKGCRDTLAHELNHAWQ 92 (141)
T ss_pred ceeEEEECCcccccchHHHHHHHHHHHHh
Confidence 45567799999999976555444443333
No 288
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.71 E-value=1.8e+02 Score=17.20 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEE
Q 038810 91 GIGTKLLNHVLDLCAKQNISEVY 113 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i~ 113 (164)
+|+..+++.+.+.+.+++..++.
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV~ 27 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKVT 27 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 57889999999999977655443
No 289
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=21.71 E-value=5.3e+02 Score=22.34 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=47.6
Q ss_pred EEEEEEeeeCcccccCC--hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 75 CVYIMTLGVLAPYRGLG--IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 75 ~~~i~~~~v~~~~rg~G--ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
-+.+.++.-++.+-..| +....+..-+..+++.|++.|.+...+..+.-..+.-++|+-...+.
T Consensus 333 pi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~ 398 (1021)
T PRK10340 333 YVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAET 398 (1021)
T ss_pred EEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECC
Confidence 56666766676655555 44677788888999999999999876666666677778999877764
No 290
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=21.42 E-value=1.9e+02 Score=19.22 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCC
Q 038810 94 TKLLNHVLDLCAKQNISEVYLHVQTNN 120 (164)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~i~~~~~~~n 120 (164)
+.+++++++.+...|+..+.+.+....
T Consensus 29 ~~li~~~l~~l~~~gi~~i~vv~~~~~ 55 (229)
T cd02523 29 KPLLERQIETLKEAGIDDIVIVTGYKK 55 (229)
T ss_pred EEHHHHHHHHHHHCCCceEEEEeccCH
Confidence 578888888888888888888777643
No 291
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.21 E-value=2.7e+02 Score=19.34 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEEecCC------hHHHHHHHHcCCeEeccee
Q 038810 96 LLNHVLDLCAKQNISEVYLHVQTNN------EDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 96 l~~~~~~~~~~~~~~~i~~~~~~~n------~~~~~~~~~~GF~~~~~~~ 139 (164)
-++..+++|++.|++.+.+....-. ...++..++.||....++-
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 4677888899999998888654322 1456777888998877653
No 292
>PRK06724 hypothetical protein; Provisional
Probab=21.13 E-value=1.4e+02 Score=17.93 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=19.2
Q ss_pred CCcEEEEEEecCChHHHHHHHH----cCCeEe
Q 038810 108 NISEVYLHVQTNNEDAINFYKK----FGFDIT 135 (164)
Q Consensus 108 ~~~~i~~~~~~~n~~~~~~~~~----~GF~~~ 135 (164)
++..+.+.|..- .+|.+||.+ +||...
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 466676766443 488999998 688765
No 293
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=21.12 E-value=1.3e+02 Score=18.03 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=18.2
Q ss_pred CcEEEEEEecCChHHHHHHHH-cCCeEecc
Q 038810 109 ISEVYLHVQTNNEDAINFYKK-FGFDITDT 137 (164)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~~~~-~GF~~~~~ 137 (164)
+..+.+.+..- .++.+||.+ +||+....
T Consensus 5 i~hi~L~v~Dl-~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 5 INHICFSVSNL-EKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred EEEEEEEecCH-HHHHHHHHhccCCEEEee
Confidence 44455554432 489999965 89987643
No 294
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=21.10 E-value=2.4e+02 Score=19.80 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=27.2
Q ss_pred cccCChHHHHHHHHHHHHHhcCCcEEEEEEec
Q 038810 87 YRGLGIGTKLLNHVLDLCAKQNISEVYLHVQT 118 (164)
Q Consensus 87 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~ 118 (164)
..|+--|-.-+..++++|.+.|+..+.+.+..
T Consensus 59 ~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFS 90 (271)
T KOG1602|consen 59 SEGHEAGFEALKEILELCKELGIKEVTVFAFS 90 (271)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 56677788889999999999999998887765
No 295
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=21.00 E-value=2.1e+02 Score=17.29 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHhcCCcEE---EEEEec---CChHHHHHH
Q 038810 91 GIGTKLLNHVLDLCAKQNISEV---YLHVQT---NNEDAINFY 127 (164)
Q Consensus 91 Gig~~l~~~~~~~~~~~~~~~i---~~~~~~---~n~~~~~~~ 127 (164)
.++.++++.++++|+++|..++ ++.+.. -|+.+.+|.
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 4778999999999999987444 443332 456666663
No 296
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=20.89 E-value=2.1e+02 Score=17.36 Aligned_cols=72 Identities=8% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHhhcCceEEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCC----------hHHHHHHHHHHHHHhcCCc
Q 038810 41 DALASGEFTKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLG----------IGTKLLNHVLDLCAKQNIS 110 (164)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~G----------ig~~l~~~~~~~~~~~~~~ 110 (164)
..++.+--..+++++++..+|.-+.+.... .+-|-|+.+=.+ +-..++-.+..-+++.|..
T Consensus 22 kIi~keIPa~ii~Edd~~lAF~Di~Pqap~---------HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~ 92 (127)
T KOG3275|consen 22 KIIRKEIPAKIIFEDDRCLAFHDIAPQAPG---------HFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLE 92 (127)
T ss_pred eeecccCCcceEeeccceEEEEecCCCCCc---------eEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcc
Confidence 333333335667788888888777766542 112455555111 2234444555556666655
Q ss_pred E-EEEEEecCCh
Q 038810 111 E-VYLHVQTNNE 121 (164)
Q Consensus 111 ~-i~~~~~~~n~ 121 (164)
. ..+.+...+.
T Consensus 93 ~gYrvv~NnG~~ 104 (127)
T KOG3275|consen 93 DGYRVVQNNGKD 104 (127)
T ss_pred cceeEEEcCCcc
Confidence 4 3444444433
No 297
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=20.85 E-value=2.1e+02 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 104 CAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 104 ~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
.+..|+..+.+.+. |+.-+.-.+.+|.+.++..+
T Consensus 346 L~dLGI~kIrLLTN--NP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 346 LNDLGIKRLRLITN--NPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHcCCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 34557888777654 67777778889988887664
No 298
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.82 E-value=1.7e+02 Score=16.82 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.1
Q ss_pred hHHHHHHHH----cCCeEecce
Q 038810 121 EDAINFYKK----FGFDITDTI 138 (164)
Q Consensus 121 ~~~~~~~~~----~GF~~~~~~ 138 (164)
.++.+||++ +||......
T Consensus 12 ~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 12 ERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred HHHHHHHHHHHhhcCceEEeec
Confidence 488999998 599887544
No 299
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=20.77 E-value=2.7e+02 Score=18.49 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=33.2
Q ss_pred eCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 83 VLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 83 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
..+++|.-|+|.++++ ..|+..+.+.+. |+.-..-...+|.+.++..
T Consensus 123 ~~~d~R~yGiGAQIL~-------dLGV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 123 FAADERDYTLAADMLK-------ALGVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CCccceehhHHHHHHH-------HcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 3567999999998875 568888887765 4444555667777777554
No 300
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=20.69 E-value=2.8e+02 Score=18.75 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=27.6
Q ss_pred CChHHHHH-HHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeE
Q 038810 90 LGIGTKLL-NHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDI 134 (164)
Q Consensus 90 ~Gig~~l~-~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~ 134 (164)
-|-|+..+ .++.....+.|...+++.....-....+...++||..
T Consensus 33 ~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~ 78 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence 36677665 3444444456767777775554455566677888844
No 301
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=20.68 E-value=1.9e+02 Score=19.06 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecC
Q 038810 93 GTKLLNHVLDLCAKQNISEVYLHVQTN 119 (164)
Q Consensus 93 g~~l~~~~~~~~~~~~~~~i~~~~~~~ 119 (164)
|+.|++++++.+...|+..+.+.+...
T Consensus 29 g~~li~~~l~~l~~~gi~~i~iv~~~~ 55 (221)
T cd06422 29 GKPLIDHALDRLAAAGIRRIVVNTHHL 55 (221)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEccCC
Confidence 468889999998888999888876653
No 302
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=20.68 E-value=2.5e+02 Score=19.25 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=48.2
Q ss_pred EEEEEeCCcEEEEEEeEeeecCCCeeEEEEEEeeeCcccccCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHH
Q 038810 49 TKLAYYSDICVGAIACRLEKKEGGAICVYIMTLGVLAPYRGLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYK 128 (164)
Q Consensus 49 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~ 128 (164)
.++......++-++.+...... .+.|-+-+|+| |..+-..+...+.+.....+.- .. . ....+++.
T Consensus 129 ai~~~sgk~ile~vavkr~d~~----~WAiPGGmvdp-------GE~vs~tLkRef~eEa~ns~~k-~~-e-~~l~~~~~ 194 (275)
T KOG4195|consen 129 AICRKSGKKILEFVAVKRPDNG----EWAIPGGMVDP-------GEKVSATLKREFGEEAMNSLQK-SN-E-EMLHKLLS 194 (275)
T ss_pred CeeecccceeeEEEEEecCCCC----cccCCCCcCCc-------hhhhhHHHHHHHHHHHHHHHhh-hh-H-HHHHHHHH
Confidence 3344444456777776665554 66777778888 4444444444443322111110 00 1 25677999
Q ss_pred HcCCeEecceeccccccCCCceeEEee
Q 038810 129 KFGFDITDTIKNYYTNITPPDCYVLTK 155 (164)
Q Consensus 129 ~~GF~~~~~~~~~~~~~~~~~~~~~~k 155 (164)
+.|++...- |..++...|...|+-
T Consensus 195 ~~g~evYkG---YvDDpRNTDNaWmET 218 (275)
T KOG4195|consen 195 QCGMEVYKG---YVDDPRNTDNAWMET 218 (275)
T ss_pred hCCeEEeee---ecCCCCcccccceeE
Confidence 999987644 334444455555543
No 303
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=20.56 E-value=1.4e+02 Score=21.62 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.5
Q ss_pred cCChHH--HHHHHHHHHHHhcCCcEEEEEEecCCh--HHHHHHHHc
Q 038810 89 GLGIGT--KLLNHVLDLCAKQNISEVYLHVQTNNE--DAINFYKKF 130 (164)
Q Consensus 89 g~Gig~--~l~~~~~~~~~~~~~~~i~~~~~~~n~--~~~~~~~~~ 130 (164)
++|+|+ ++...+++.+.+.|...+++--...-. .+..++...
T Consensus 25 ~RgiGKtya~k~~~i~df~~~G~qfiyLRr~k~E~~~~~n~~f~dv 70 (333)
T PF05894_consen 25 ARGIGKTYALKKKLIKDFIEYGEQFIYLRRYKTELDKMKNKFFNDV 70 (333)
T ss_pred cccccchhHHHHHHHHHHHhcCCEEEEEEecchHHHHHhhHHHHHH
Confidence 355664 788888999999999988886554221 233355554
No 304
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=20.44 E-value=2.4e+02 Score=18.09 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEec
Q 038810 92 IGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITD 136 (164)
Q Consensus 92 ig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~ 136 (164)
+.+.++.++..+|...+-..|.+. .+...|.+++|+...|
T Consensus 6 ~pRLiL~~l~TeAvrt~sr~I~lG-----~S~~~flr~lG~~~tG 45 (161)
T PF04796_consen 6 YPRLILAWLCTEAVRTKSREIELG-----RSLSEFLRRLGLSPTG 45 (161)
T ss_pred hhHHHHHHHHHHHhccCCceEeec-----cCHHHHHHHhCCCCCC
Confidence 467888889999988887777765 2677899999998855
No 305
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=20.39 E-value=1.3e+02 Score=16.36 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.2
Q ss_pred ChHHHHHHHH-cCCeEeccee
Q 038810 120 NEDAINFYKK-FGFDITDTIK 139 (164)
Q Consensus 120 n~~~~~~~~~-~GF~~~~~~~ 139 (164)
-..+..||.+ +||+......
T Consensus 9 ~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 9 LEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred HHHHHHHHHhccCCEEEEeec
Confidence 4588999998 9998877764
No 306
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=20.34 E-value=5.8e+02 Score=22.20 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=49.3
Q ss_pred EEEEEEeeeCcccc--cCChHHHHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEecce
Q 038810 75 CVYIMTLGVLAPYR--GLGIGTKLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTI 138 (164)
Q Consensus 75 ~~~i~~~~v~~~~r--g~Gig~~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~ 138 (164)
-+.+.++.-++.+- |+.+....+..-+..+++.|++.+.+...+..+.-..+.-++|+-...+.
T Consensus 349 pi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 349 PLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEA 414 (1027)
T ss_pred EEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEec
Confidence 56676766665544 44466788888889999999999999877777777888889999877664
No 307
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.30 E-value=2.5e+02 Score=17.89 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEecCChHHHHHHHHcCCeEeccee
Q 038810 95 KLLNHVLDLCAKQNISEVYLHVQTNNEDAINFYKKFGFDITDTIK 139 (164)
Q Consensus 95 ~l~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~ 139 (164)
.++..+...++..|.-.+.......-.....+.++.||.......
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 444444445444442222222222234668899999998776554
No 308
>PHA00771 head assembly protein
Probab=20.17 E-value=2.3e+02 Score=17.48 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=42.9
Q ss_pred eeCcccccCChHHHHHHHHHHHHHhc-CCcEEEEEEecCChHHHHHHHHcCCeEecceeccccccCCCceeEE
Q 038810 82 GVLAPYRGLGIGTKLLNHVLDLCAKQ-NISEVYLHVQTNNEDAINFYKKFGFDITDTIKNYYTNITPPDCYVL 153 (164)
Q Consensus 82 ~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~ 153 (164)
.-+|++||+-- +.-...-++..+. .+..+...+...-+-.+-..+-+|.+.++...+++... .+..++
T Consensus 68 ~y~P~fRG~ya--~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~g~--~~vT~Y 136 (151)
T PHA00771 68 MYLPEIRGFSK--EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGV--DDVTFY 136 (151)
T ss_pred eeCccccchhH--HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhcCC--CceEEE
Confidence 35899999732 4444444444443 45555555555555666777778999999999998544 344443
Done!