Query 038812
Match_columns 84
No_of_seqs 107 out of 302
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_H Ribosomal protein S8 co 99.6 4.2E-16 1.5E-20 107.8 4.7 42 43-84 1-43 (130)
2 1i6u_A 30S ribosomal protein S 99.6 5.9E-16 2E-20 107.0 4.7 42 43-84 1-43 (130)
3 3u5c_W 40S ribosomal protein S 99.6 4.1E-15 1.4E-19 102.7 5.4 42 43-84 1-43 (130)
4 3bbn_H Ribosomal protein S8; s 99.5 3.4E-14 1.2E-18 99.0 4.8 41 43-84 1-41 (134)
5 1sei_A Ribosomal protein S8; p 99.5 3.7E-14 1.3E-18 98.1 4.5 38 46-84 4-41 (130)
6 1s03_H 30S ribosomal protein S 99.5 4.5E-14 1.5E-18 97.6 4.5 38 46-84 4-41 (129)
7 2vqe_H 30S ribosomal protein S 99.4 3.4E-14 1.1E-18 99.4 3.5 41 43-84 1-41 (138)
8 3rf2_A 30S ribosomal protein S 99.4 2.5E-13 8.7E-18 98.2 4.5 41 43-84 1-42 (168)
9 3gka_A N-ethylmaleimide reduct 26.4 58 0.002 24.8 3.5 36 36-71 148-183 (361)
10 4gip_A Fusion glycoprotein F2; 22.4 40 0.0014 21.8 1.6 14 46-59 62-75 (81)
11 2a40_C Wiskott-aldrich syndrom 20.3 45 0.0015 18.0 1.3 14 46-59 3-16 (32)
No 1
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=99.61 E-value=4.2e-16 Score=107.85 Aligned_cols=42 Identities=45% Similarity=0.705 Sum_probs=39.7
Q ss_pred hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|++ ||||||||+||||+++||.+|.|+|+||++.+|+++|++
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~ 43 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQK 43 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHH
Confidence 777 999999999999999999999999999999999999984
No 2
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=99.60 E-value=5.9e-16 Score=106.97 Aligned_cols=42 Identities=36% Similarity=0.509 Sum_probs=39.7
Q ss_pred hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|++ |||+||||+||||+++||.+|.|+|+||++.+||++|++
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~ 43 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQD 43 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHH
Confidence 777 999999999999999999999999999999999999984
No 3
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=99.55 E-value=4.1e-15 Score=102.73 Aligned_cols=42 Identities=48% Similarity=0.693 Sum_probs=39.6
Q ss_pred hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|++ ||||||||+||||+++||++|.++|+||++.+|+++|++
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~ 43 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQK 43 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHT
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHH
Confidence 777 999999999999999999999999999999999999985
No 4
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.47 E-value=3.4e-14 Score=98.99 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=38.4
Q ss_pred hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|.+|||+||||+||||++++|.+|.+ |+||++.+|+++|++
T Consensus 1 m~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~ 41 (134)
T 3bbn_H 1 MGKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLR 41 (134)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHT
T ss_pred CcccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHH
Confidence 43399999999999999999999999 999999999999985
No 5
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=99.46 E-value=3.7e-14 Score=98.10 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=37.1
Q ss_pred cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
||||||||+||||++++|.+|.+ |+||++.+||++|++
T Consensus 4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~ 41 (130)
T 1sei_A 4 DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKR 41 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999984
No 6
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=99.45 E-value=4.5e-14 Score=97.56 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=37.1
Q ss_pred cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|||+||||+||||++++|.+|.+ |+||++.+||++|++
T Consensus 4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~ 41 (129)
T 1s03_H 4 DPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKE 41 (129)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999984
No 7
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=99.45 E-value=3.4e-14 Score=99.41 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=38.2
Q ss_pred hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|.+||||||||+||||++++|.+|.+ |+||++.+|+++|++
T Consensus 1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~ 41 (138)
T 2vqe_H 1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAR 41 (138)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHH
Confidence 43399999999999999999999999 999999999999984
No 8
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=99.38 E-value=2.5e-13 Score=98.19 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=37.0
Q ss_pred hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812 43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84 (84)
Q Consensus 43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~ 84 (84)
|++ |||||||++||||++++|.+|.| |+||++.+|+++|++
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~ 42 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKK 42 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHH
Confidence 777 99999999999999999999999 999999999999974
No 9
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=26.38 E-value=58 Score=24.76 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=26.9
Q ss_pred hhhhhhhhcccHHHHHHHhhHhHHhhCCceeEEecc
Q 038812 36 PREVQTVMGRRILNDALRAIVNAERRGKATVELQPI 71 (84)
Q Consensus 36 ~~~~~~~MsmDpLADaLTrIrNAerrGK~qV~I~Pa 71 (84)
|||+...--.+.+.|+-..-++|.+.|.+-|.|.-+
T Consensus 148 pr~mt~~eI~~ii~~f~~AA~~A~~aGfDgVEih~a 183 (361)
T 3gka_A 148 PRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGA 183 (361)
T ss_dssp CEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 444443332288899999999999999999999543
No 10
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=22.36 E-value=40 Score=21.79 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.5
Q ss_pred cHHHHHHHhhHhHH
Q 038812 46 RILNDALRAIVNAE 59 (84)
Q Consensus 46 DpLADaLTrIrNAe 59 (84)
.||.|.|.+|.|-.
T Consensus 62 ~Pi~daL~~I~~~~ 75 (81)
T 4gip_A 62 QPIGENLETIRNQL 75 (81)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC
Confidence 89999999999854
No 11
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=20.32 E-value=45 Score=17.95 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=12.5
Q ss_pred cHHHHHHHhhHhHH
Q 038812 46 RILNDALRAIVNAE 59 (84)
Q Consensus 46 DpLADaLTrIrNAe 59 (84)
|+.+|.|+.||-+.
T Consensus 3 d~RsdLL~~Ir~G~ 16 (32)
T 2a40_C 3 DARSDLLSAIRQGF 16 (32)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHccC
Confidence 89999999999874
Done!