BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038815
(1436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 131
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 132 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1057 VMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS 201
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 129
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 130 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1057 VMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 178 IMRNM-HKICKGRTVIIIAHRLS 199
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 185 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 135
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 136 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1057 VMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS 205
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G +G+GK+TL ++ G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 131
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 132 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1057 VMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS 201
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKXXXXXXXXXXXXXXLKK 946
E+ + L V+ + G ++MG SG+GK+T+++++ + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 947 QETFTRIS----GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
E T+I G+ Q PL+T E++ + + E R+ E +++ E
Sbjct: 75 DE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L + + LS Q++R+ IA L NP II D+PT LD++ +M+ +K
Sbjct: 134 L----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 1063 N-TVETGRTVVCTIHQPSIDIF 1083
E G+TVV H ++ F
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF 211
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 135
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD + +
Sbjct: 136 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 1057 VMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS 205
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L D+ ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALD----YESEHVIMRNMHK 190
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 129
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 130 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1057 VMRTVKNTVETGRTVVC 1073
+MR + + + GRTV+
Sbjct: 178 IMRNM-HKICKGRTVII 193
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 185 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXX 942
D V+L+ ++ + + G + ++G SG+GK+TL ++ G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 943 XLKKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
L++Q + + + +P ++V E ++Y+A L + SE R+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY--- 135
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 136 -----------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1057 VMRTVKNTVETGRTVVC 1073
+MR + + + GRTV+
Sbjct: 184 IMRNM-HKICKGRTVII 199
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIH- 379
+T+VG++ G+SGGQ++R+ AL L DE ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 380 ILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
I G VI ++ T D II++ G IV G + +L ES+
Sbjct: 191 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKXXXXXXXXXXXXXXLKK 946
E+ + L V+ + G ++MG SG+GK+T+++++ + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 947 QETFTRIS----GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
E T+I G+ Q PL+T E++ + + E R+ E +++ E
Sbjct: 75 DE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L + + LS Q++R+ IA L NP II D+PT LD++ +M+ +K
Sbjct: 134 L----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 1063 N-TVETGRTVVCTIHQPSIDIF 1083
E G+TVV H ++ F
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF 211
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKXXXXXXXXXXXXXXLKKQETFTR 952
LN ++ + G AL+G SG+GK+TL+ +AG + L ++ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---R 75
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPP--EVDSETRKMFIEEIMELVELNPLRQSL 1010
G QN P +TVY+++ + LR P E+D + R E+ +++ ++ L L
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKL---L 127
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGR 1069
P LS Q++R+ IA LV P ++ +DEP S LDA V +K E G
Sbjct: 128 NRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 1070 TVVCTIH 1076
T V H
Sbjct: 186 TTVYVTH 192
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 28/197 (14%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKXXXXXXXXXXXXXXLKK 946
+L G+S + PG AL+G SG GK+T++ D L G L
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-----IFIDGSEIKTLNP 1148
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP------EVDSETRKMFIEEIMEL 1000
+ T ++I+ ++ + ++ E+++Y L P +V+ R I +
Sbjct: 1149 EHTRSQIAIVSQEPTLFD--CSIAENIIYG----LDPSSVTMAQVEEAARLANIHNF--I 1200
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
EL ++ VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1201 AELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 1061 VKNTVETGRTVVCTIHQ 1077
+ E GRT + H+
Sbjct: 1260 LDRARE-GRTCIVIAHR 1275
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK- 602
Query: 1068 GRTVVCTIHQPS 1079
GRT + H+ S
Sbjct: 603 GRTTIIIAHRLS 614
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSST 366
+TLVGD + +SGGQK+R+ AL L +DE ++ LD+ +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTT-------LMDVLAGRKXXXXXXXXXXXXXXLKK 946
+L G++ + G AL+G SG GK+T L D L G L++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
I G Q + T+ E++ Y E++ ++ + +++L
Sbjct: 465 ------IIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQ 515
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + E
Sbjct: 516 FDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 1067 TGRTVVCTIHQPSI----DIFESFDEAI 1090
GRT + H+ S D+ FD +
Sbjct: 575 -GRTTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG--ISGGQKRRVTTGPALA 352
DV M +EAN D+ +K L DTLVG+ RG +SGGQK+R+ AL
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 353 -----LFMDEISNGLDSST 366
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTT-------LMDVLAGRKXXXXXXXXXXXXXXLKK 946
+L G++ + G AL+G SG GK+T L D L G L++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
I G Q + T+ E++ Y E++ ++ + +++L
Sbjct: 465 ------IIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQ 515
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + E
Sbjct: 516 FDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 1067 TGRTVVCTIHQPSI----DIFESFDEAI 1090
GRT + H+ S D+ FD +
Sbjct: 575 -GRTTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG--ISGGQKRRVTTGPALA 352
DV M +EAN D+ +K L DTLVG+ RG +SGGQK+R+ AL
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 353 -----LFMDEISNGLDSST 366
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF 950
K+V L+ V+ G ++G SGAGKTT M ++AG +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 951 T----RISGYCEQNDIHSPLVTVYESLLYS-AWLRLPPEVDSETRKMFIEEIMELVELNP 1005
R G Q P +T +E++ + +++ E E RK +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVK 1062
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1063 NTVETGRTVVCTIHQPSIDIFESFD 1087
+ + G T++ H P+ DIF D
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIAD 209
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF 950
K+V L+ V+ G ++G SGAGKTT M ++AG +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 951 T----RISGYCEQNDIHSPLVTVYESLLYS-AWLRLPPEVDSETRKMFIEEIMELVELNP 1005
R G Q P +T +E++ + +++ E E RK +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVK 1062
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1063 NTVETGRTVVCTIHQPSIDIFESFD 1087
+ + G T++ H P+ DIF D
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIAD 209
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXX---XLKKQETF 950
+L V+ F G + ++G +G+GKTTL+ +LAG L+K
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKN--- 82
Query: 951 TRISGYCEQNDIHSPL-VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
GY QN + TV E + +S L + +SE RK I++++E
Sbjct: 83 ---VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLE---------- 126
Query: 1010 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
LVGL G++ LS Q++RL IA L + + +DEP S LD + + + +++
Sbjct: 127 LVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL 186
Query: 1065 VETGRTVVCTIHQ 1077
G+ ++ H+
Sbjct: 187 KNEGKGIILVTHE 199
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 16/190 (8%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF 950
K+ ++GVS + G AL+G SG GKTT + +LAG +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE---IMELVELNPLR 1007
+ G QN P +TV+E++ + R + + E R + I I L++ P
Sbjct: 75 REV-GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-- 131
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVE 1066
+ LS Q++R+ +A LV P ++ DEP S LDA I+ +K+ E
Sbjct: 132 ---------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 1067 TGRTVVCTIH 1076
G T V H
Sbjct: 183 LGITSVYVTH 192
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 12/202 (5%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKXXXXXXXXXXXXXXLKK 946
E+ + L V+ + G ++ G SG+GK+T ++++ + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 947 QETFTRIS----GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
E T+I G+ Q PL+T E++ + E R+ E ++ E
Sbjct: 75 DE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE 133
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L + + LS Q++R+ IA L NP II DEPT LD++ + + +K
Sbjct: 134 L----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLK 189
Query: 1063 N-TVETGRTVVCTIHQPSIDIF 1083
E G+TVV H ++ F
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF 211
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 8/183 (4%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+L G+S G + L+G +GAGKTT + +++ +++ ++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
Y + Y ++ +LR + + E + E+ L + +
Sbjct: 90 ISYLPEE------AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
VS S ++L IA L+ NP + +DEPTSGLD A V + +K + G T++
Sbjct: 144 --VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 1074 TIH 1076
+ H
Sbjct: 202 SSH 204
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKXXXXXXXXXXXXXXLKKQ 947
L G++ + G +TA++G +G GK+TL + +GR +K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAW-LRLPPE-----VDSETRKMFIEEIMELV 1001
E+ I N + S +VY+ + + A ++LP + VD+ ++ IE + +
Sbjct: 84 ESIG-IVFQDPDNQLFS--ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-- 138
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-T 1060
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 139 --KP----------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1061 VKNTVETGRTVVCTIHQPSIDI 1082
V+ E G T++ H IDI
Sbjct: 187 VEMQKELGITIIIATH--DIDI 206
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFT 951
L +L G++ R G + ++G SG+GK+T + L + K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 952 RIS---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
++ G Q P +TV ++ + P +V R+ + MEL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
P LS Q +R+ IA L P I+ DEPTS LD V+ +K G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1069 RTVVCTIHQ 1077
T+V H+
Sbjct: 189 MTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFT 951
L +L G++ R G + ++G SG+GK+T + L + K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 952 RIS---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
++ G Q P +TV ++ + P +V R+ + MEL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
P LS Q +R+ IA L P I+ DEPTS LD V+ +K G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1069 RTVVCTIHQ 1077
T+V H+
Sbjct: 210 MTMVVVTHE 218
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKXXXXXXXXXXXXXXLKK 946
+L ++ + G A +G+SG GK+TL+ DV +G+ L+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
Q G +Q++I TV E++L L P D EE++E ++
Sbjct: 416 Q------IGLVQQDNILFS-DTVKENIL----LGRPTATD--------EEVVEAAKMANA 456
Query: 1007 RQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
++ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 1058 MRTVKNTVETGRTVVCTIHQPS 1079
+ + + RT + H+ S
Sbjct: 517 QEAL-DVLSKDRTTLIVAHRLS 537
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
LS Q++R++IA L P ++ DEPTS LD V+R ++ E G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
+N ++ + G L+G SG GKTT + ++AG + IS
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
+ + P +TVYE++ + ++ P+ + + R + E++++ EL L P
Sbjct: 88 MVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 140
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 141 --AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
+N ++ + G L+G SG GKTT + ++AG + IS
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
+ + P +TVYE++ + ++ P+ + + R + E++++ EL L P
Sbjct: 87 MVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 139
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 140 --AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF---TRISGYCEQND 961
G +TAL+G SG+GK+T++ +L R +++ ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL-RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 962 IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ---SLVGLPGVSG 1018
+ S ++ E++ Y A P V +E + E + + Q ++VG GV
Sbjct: 460 LFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL- 514
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + ++ GRTV+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 1079 S 1079
S
Sbjct: 574 S 574
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 41/253 (16%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDE 234
+ + I +D S I GS+T L+GP SG ++ +GH++ +
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGP---SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 441
Query: 235 FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
P + + IG ++ +E + FS EN A DP
Sbjct: 442 LNPVWL-------RSKIGTVS-QEPILFSCSIA---------------ENIAYGADDPS- 477
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL--- 351
A E Q + + + +T+VG++ + +SGGQK+R+ AL
Sbjct: 478 ----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKN 532
Query: 352 --ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409
L +DE ++ LD+ + + ++ + +++G V+ + T + + +L G
Sbjct: 533 PKILLLDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHHL-STIKNANMVAVLDQG 588
Query: 410 LIVYLGPRELVLD 422
I G E +L
Sbjct: 589 KITEYGKHEELLS 601
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF---TRISGYCEQND 961
G +TAL+G SG+GK+T++ +L R +++ ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL-RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 962 IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ---SLVGLPGVSG 1018
+ S ++ E++ Y A P V +E + E + + Q ++VG GV
Sbjct: 429 LFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL- 483
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + ++ GRTV+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 1079 S 1079
S
Sbjct: 543 S 543
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 35/202 (17%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXXXLKK 946
+L+GV+ + +PG L A++G +G+GK+TLM+++ GR +K
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-----VEVDELDVRTVKL 412
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
++ IS ++ + S T+ E+L W R D EI+E ++ +
Sbjct: 413 KDLRGHISAVPQETVLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQI 458
Query: 1007 RQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
++ LP G S Q++RL+IA LV P ++ +D+ TS +D +
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 1058 MRTVKNTVETGRTVVCTIHQPS 1079
+ +K + T + T P+
Sbjct: 519 LDGLKRYTKGCTTFIITQKIPT 540
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389
R SGGQK+R++ AL L +D+ ++ +D T +I++ +++ G +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFII 534
Query: 390 LQPAPETYDLFDDIILLSDGLIVYLGPRELVLD 422
Q P T L D I++L +G + G + +L+
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 27/203 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
L+GVS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 955 GYCEQNDIHSPL--VTVYESLL---------------YSAWLRLPPEVDSETRKMFIEEI 997
G PL +TV E+LL Y W+ P+ + K F +I
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF--KI 137
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 1058 MRTVKNTVETGRTVVCTIHQPSI 1080
V G T + H+ I
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDI 215
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIH 963
G AL+G +G+GK+T+ +L + + I G Q+ I
Sbjct: 45 SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTIL 104
Query: 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVSGLSTE 1022
Y ++LY EV T+ ++ + +E P + ++VG G+ LS
Sbjct: 105 FNETIKY-NILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LSGG 159
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+R+R+ IA L+ +P I+ DE TS LD++ + + V++ + RT++ H+ S
Sbjct: 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS 215
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF-----TRISGYC 957
+ G L+G SG GKTT + ++AG + ++ R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017
Q+ P +TVY+++ + LR P + + R + E++ L EL +
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR-------- 138
Query: 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389
R +SGGQ++RV G A+ MDE + LD+ ++ +++ L G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYV 196
Query: 390 LQPAPETYDLFDDIILLSDGLIVYLGPRELVLD 422
E + D I +++ G++ +G + V D
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 27/203 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
L+GVS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 955 GYCEQNDIHSPL--VTVYESLL---------------YSAWLRLPPEVDSETRKMFIEEI 997
G PL +TV E+LL Y W+ P+ + K F +I
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAF--KI 137
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 1058 MRTVKNTVETGRTVVCTIHQPSI 1080
V G T + H+ I
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDI 215
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 27/203 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
L+GVS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 955 GYCEQNDIHSPL--VTVYESLL---------------YSAWLRLPPEVDSETRKMFIEEI 997
G PL +TV E+LL Y W+ P+ + K F +I
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAF--KI 137
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+E ++L+ L G LS Q K + I L+ NP +I MD+P +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDI 192
Query: 1058 MRTVKNTVETGRTVVCTIHQPSI 1080
V G T + H+ I
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDI 215
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 31/207 (14%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKXXXXXXXXXX 939
++D +L +S +P + A G SG GK+T+ +L AG
Sbjct: 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI 69
Query: 940 XXXXLKKQETFTRISGYCEQNDIHSPLV--TVYESLLYSAWLRLPPE-----VDSETRKM 992
+ Q G+ Q+ S ++ T+ E+L Y E +D +
Sbjct: 70 SLENWRSQ------IGFVSQD---SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
F+E + + +LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 121 FVENMPD--QLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+ ++V + + +++ GRT + H+ S
Sbjct: 174 SESMVQKAL-DSLMKGRTTLVIAHRLS 199
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 17/191 (8%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKXXXXXXXXXXXXXXLKK 946
+L G+S + + G +++G SG+GK+TL+ +L G+ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R G+ Q P +T E+++ P+ +++ R ++ L EL L
Sbjct: 79 LRN--RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-L 130
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
L P LS +++R+ IA L P ++F DEPT LD+ VM E
Sbjct: 131 GDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1067 TGRTVVCTIHQ 1077
G ++V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 37.4 bits (85), Expect = 0.063, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 306 QEANVLTDYYLKVLGLDICADTLVGDEMIRG---ISGGQKRRVTTGPALA-----LFMDE 357
+EA +Y L LGL GD++ R +SGG+++RV ALA LF DE
Sbjct: 115 KEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 358 ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
+ LDS+ T ++++ + I G I ++ E +L + + DG +V
Sbjct: 167 PTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKXXXXXXXXXXXXXXLKKQETFTR 952
+ GVS R G + L+G SG+GKTT++ ++AG R L Q+ R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---R 87
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
G QN +TVY+++ + + P+ + + R + EL+ L
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYANR 141
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVKNTVETGR 1069
P LS Q++R+ +A L P ++ DEP + +D R +R V + E G
Sbjct: 142 FP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--EMGV 197
Query: 1070 TVVCTIH 1076
T V H
Sbjct: 198 TSVFVTH 204
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
+SGGQ++RV ALA L DE +D+ ++ +RQ +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 392 PAPETYDLFDDIILLSDGLIVYLGPRELVLD 422
E ++ D +++L +G + G E V +
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF--- 950
+LN +S + PG + ++G SG GKTTL+ LAG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
R GY Q + P +TVY ++ Y R IE ++E L
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLE----------L 125
Query: 1011 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 12/199 (6%)
Query: 877 DMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXX 936
D+ E++ V+ + + G+ G + L+G +GAGKTT + +AG
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 937 XXXXXXXLKKQETFTRISGYC---EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF 993
K G E I P +TVYE+L A+ R D E K
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIF-PELTVYENLXXGAYNR----KDKEGIKRD 118
Query: 994 IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
+E I L L++ L L G LS +++ L I L + P ++ DEP+ GL
Sbjct: 119 LEWIFSL--FPRLKERLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPIL 174
Query: 1054 AAIVMRTVKNTVETGRTVV 1072
+ V ++ + G T++
Sbjct: 175 VSEVFEVIQKINQEGTTIL 193
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHS 964
G +G SG GK+TL+ ++AG + + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYALY 87
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024
P ++V E++ + L + R + E+++L L + LS QR
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQR 139
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIH 1076
+R+ I LVA PS+ +DEP S LDA A + MR + + GRT++ H
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385
D + +SGGQ++RV G L +DE + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 386 VISLLQPAPETYDLFDDIILLSDGLIVYLG-PREL 419
+I + E L D I++L G + +G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHS 964
G +G SG GK+TL+ ++AG + + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYALY 87
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024
P ++V E++ + L + R + E+++L L + LS QR
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQR 139
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIH 1076
+R+ I LVA PS+ +DEP S LDA A + MR + + GRT++ H
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385
D + +SGGQ++RV G L +DE + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 386 VISLLQPAPETYDLFDDIILLSDGLIVYLG-PREL 419
+I + E L D I++L G + +G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 16/185 (8%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKK------QETFTRISGY 956
+ G + ++G +G GK+T + +LAG+ ++ Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLRQSLVGLPG 1015
+ + V + + + L + D ET K+ EE+++ +EL N L +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLERE------ 155
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
+ LS + +R+ IA L+ N + F DEP+S LD R R ++ E G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 1076 HQPSI 1080
H ++
Sbjct: 216 HDLAV 220
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
V+ LS + +R+ IA L+ + I +DEP++ LD V R +++ E +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 1076 HQPSIDI 1082
+ I
Sbjct: 459 EHDVLXI 465
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 860 LPFEPHSLTFDEV------VYSVDMPQEMK--------LQGVHEDKLVLLNGVSGAFRPG 905
LP E + DE+ V +D+ +++K ++ + + +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 906 VLTALMGVSGAGKTTLMDVLAGR-KXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHS 964
+ ++G +G GKTT +L G K Q F G +Q ++
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024
++L S+W F EE+ + + L+ L +S V+ LS +
Sbjct: 355 S----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGEL 391
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI-HQPSI 1080
++L IA L + +D+P+S LD IV + +K + V I H SI
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISG---YCEQ 959
+ + ++G +G GKTT++ +LAG + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGE----IIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78
Query: 960 NDIHSPLVTVYESLLY----SAWLR-----LPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
+++S + + + Y S +L+ + ++D +K +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
+ GL +RL +A L+ + D+P+S LD R + + ++ ++
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 1071 VVC 1073
+V
Sbjct: 191 IVV 193
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 41/192 (21%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
L+ +S G ++G +GAGKT ++++AG L + T +S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-------FHVPDSGRILLDGKDVTDLS 68
Query: 955 ------GYCEQNDIHSPLVTVYESLLYSAWLRL---PPEVDSETRKMFIEEIMELVELNP 1005
+ QN P + V ++L + ++ P V R + IE L++ NP
Sbjct: 69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 1066 ETGRTVVCTIHQ 1077
E R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETF-----TRISGYC 957
+ G L+G SG GKTT + +AG + ++ R
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017
Q+ P TVY+++ + LR P+ + + R + E + L EL L P
Sbjct: 90 FQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL------LNRKP--R 141
Query: 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 142 ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 7/176 (3%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXX----XXXXXLK 945
D +L GV+ G + ALMG +GAGK+TL +LAG L
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
E + Q + P VT+ L + +L EV +++ +EL++ +
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD- 132
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 133 --ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQ 947
++ K +L ++ +PG AL+G +G+GKTT++++L K +
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK 423
Query: 948 ETFTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+ R S G Q+ I TV E+L Y P D EEI E +L
Sbjct: 424 RSSLRSSIGIVLQDTILFS-TTVKENLKYGN----PGATD--------EEIKEAAKLTHS 470
Query: 1007 RQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+ LP LS QR+ L I +ANP I+ +DE TS +D + +
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 1058 MRTVKNTVETGRTVVCTIHQ 1077
+ +E G+T + H+
Sbjct: 531 QAAMWKLME-GKTSIIIAHR 549
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+L G++ PG +TAL+G +G+GK+T+ +L L E +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-------QNLYQPTGGKVLLDGEPLVQY 86
Query: 954 SGYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
+ + +H+ + V E LL+ R TR +EEI + + + G
Sbjct: 87 ----DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 1013 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 1064 TVE-TGRTVVCTIHQPSI 1080
+ E RTV+ HQ S+
Sbjct: 202 SPEWASRTVLLITHQLSL 219
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHS 964
G +G SG GK+TL+ ++AG + + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYALY 87
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024
P ++V E++ + L + R + E+++L L + LS QR
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQR 139
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIH 1076
+R+ I LVA PS+ +D+P S LDA A + MR + + GRT++ H
Sbjct: 140 QRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385
D + +SGGQ++RV G L +D+ + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 386 VISLLQPAPETYDLFDDIILLSDGLIVYLG-PREL 419
+I + E L D I++L G + +G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 8/198 (4%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXX----XXXXXL 944
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ L
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF-IEEIM-ELVE 1002
++ Q + P V+ + L +A + ET F +++M E +
Sbjct: 71 SPEDRAGEGIFMAFQYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 129
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L + + L+ G S ++KR I V P + +DE SGLD A +V V
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 1063 NTVETGRTVVCTIHQPSI 1080
+ + R+ + H I
Sbjct: 190 SLRDGKRSFIIVTHYQRI 207
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 8/198 (4%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXX----XXXXXL 944
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ L
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF-IEEIM-ELVE 1002
++ Q + P V+ + L +A + ET F +++M E +
Sbjct: 90 SPEDRAGEGIFMAFQYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 148
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L + + L+ G S ++KR I V P + +DE SGLD A +V V
Sbjct: 149 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 1063 NTVETGRTVVCTIHQPSI 1080
+ + R+ + H I
Sbjct: 209 SLRDGKRSFIIVTHYQRI 226
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
LS +++R+ IA +V P I+ +DEP GLD ++R V+ G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
LS +++R+ IA +V P I+ +DEP GLD ++R V+ G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHS 964
G + A++G +G GK+TL+D+L G K E + I G+ Q S
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQ-----------GKIEVYQSI-GFVPQF-FSS 77
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024
P S+L + +++ + + + + L+ L + + + LS QR
Sbjct: 78 PFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQR 134
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPS 1079
+ + IA + + +I +DEPTS LD IV+ + + ++ TVV T HQP+
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKXXXXXXXXXXXXXXLKKQ 947
L+ VS + G AL+G SG+GK+T+ DV +G L++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE-VDSETRKMFIEEIMELVELNPL 1006
F +S ++H T+ ++ Y+A E ++ R+ ME +E P
Sbjct: 419 --FALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMPQ 468
Query: 1007 R-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
+++G G S LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 469 GLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DEL 526
Query: 1066 ETGRTVVCTIHQPSIDIFESFDEAI 1090
+ +TV+ H+ S E DE +
Sbjct: 527 QKNKTVLVIAHRLS--TIEQADEIL 549
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLK---KQETF 950
+L +S G L G++GAGKTTL+++L + K ET
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 951 TRISGYCEQNDIHSPLVTVYES------LLYSAW--LRLPPEVDSETRKMFIEEIMELVE 1002
+ G+ HS L E ++ A+ + + ++D E R ++++LV
Sbjct: 96 RQHIGFVS----HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVG 150
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ Q +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 151 XSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 910 LMGVSGAGKTTLMDVLAG--RKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLV 967
L+G +GAGK+ ++++AG + L + R G+ Q+ P +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER---RGIGFVPQDYALFPHL 85
Query: 968 TVYESLLYSAWLRLPPEVDSETRKMFIEE---IMELVELNPLRQSLVGLPGVSGLSTEQR 1024
+VY ++ Y LR V+ + R + E I L++ P R LS +R
Sbjct: 86 SVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGER 132
Query: 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
+R+ +A LV P ++ +DEP S +D + ++M ++
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 16/205 (7%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKXXXXX--------XXXXXXXXXLKKQETFTRIS 954
RPG + L+G +G GK+T + +LAG++ + Q FT++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE--LNPLRQSLVG 1012
++DI + + Y + A ++ P + E K+ +E+ E V+ + L+ V
Sbjct: 161 ----EDDIKAIIKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
+ LS + +R I + V + DEP+S LD + + +++ + + V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1073 CTIHQPSI-DIFESFDEAIPGVQKI 1096
C H S+ D F I GV +
Sbjct: 276 CVEHDLSVLDYLSDFVCIIYGVPSV 300
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+LN G F + +MG +G GKTTL+ +LAG +K Q+ +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
G Q L + + R F+ + + PLR +
Sbjct: 427 PGTVRQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
V LS + +R+ I + L I +DEP++ LD+ I + ++
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKXXXXXXXXXXXXXXL 944
+++L G++ RPG +TAL+G +G+GK+T+ +L G+ L
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 89
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+Q ++ ++ + ++ E++ Y T+K +EEI +
Sbjct: 90 HRQ-----VAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKS 131
Query: 1005 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 132 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 1056 IVMRTVKNTVETGRTVVCTIHQ 1077
V + + + E V I Q
Sbjct: 192 QVEQLLYESPERYSRSVLLITQ 213
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRIS 954
LNG++ + G L A++G G GK++L+ L Q+ +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI--- 77
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL---RQSLV 1011
QND ++ E++L+ L P + I+ L +L L ++ +
Sbjct: 78 ----QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 62/246 (25%)
Query: 865 HSLTFDEVVYSVDMPQEMKLQGVHE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 921
H F+ + V++P+++ VH + VL + G++ ++G +G GKTT
Sbjct: 77 HKCPFN-AISIVNLPEQLDEDCVHRYGVNAFVLYR--LPIVKDGMVVGIVGPNGTGKTTA 133
Query: 922 MDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLVTVYES--------L 973
+ +LAG+ I CE ND ++ +
Sbjct: 134 VKILAGQ-----------------------LIPNLCEDNDSWDNVIRAFRGNELQNYFER 170
Query: 974 LYSAWLR----------LPPEVDSETRKMF--IEEIMEL-------VELNPLRQSLVGLP 1014
L + +R LP V + R++ ++E+ + N L + L
Sbjct: 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL---- 226
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
LS + +R+ IA L+ F DEP+S LD R V R ++ G+ V+
Sbjct: 227 --HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 1075 IHQPSI 1080
H ++
Sbjct: 285 EHDLAV 290
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 862 FEPHSLTFDEVVYSVDMPQEMKLQG---VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 918
F P+ + F ++ VD+ +E ++ V + L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 919 TTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 978
TT + +LAG + K Q G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYELL----- 438
Query: 979 LRLPPEVDSE--TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1036
++DS + E+++ + + L V LS + +R+ IA L+ +
Sbjct: 439 ----SKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRD 489
Query: 1037 PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
I +DEP++ LD V R +++ +E +
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 62/246 (25%)
Query: 865 HSLTFDEVVYSVDMPQEMKLQGVHE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 921
H F+ + V++P+++ VH + VL + G++ ++G +G GKTT
Sbjct: 63 HKCPFN-AISIVNLPEQLDEDCVHRYGVNAFVLYR--LPIVKDGMVVGIVGPNGTGKTTA 119
Query: 922 MDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLVTVYES--------L 973
+ +LAG+ I CE ND ++ +
Sbjct: 120 VKILAGQ-----------------------LIPNLCEDNDSWDNVIRAFRGNELQNYFER 156
Query: 974 LYSAWLR----------LPPEVDSETRKMF--IEEIMEL-------VELNPLRQSLVGLP 1014
L + +R LP V + R++ ++E+ + N L + L
Sbjct: 157 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL---- 212
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
LS + +R+ IA L+ F DEP+S LD R V R ++ G+ V+
Sbjct: 213 --HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 1075 IHQPSI 1080
H ++
Sbjct: 271 EHDLAV 276
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 862 FEPHSLTFDEVVYSVDMPQEMKLQG---VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 918
F P+ + F ++ VD+ +E ++ V + L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 919 TTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 978
TT + +LAG + K Q G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYELL----- 424
Query: 979 LRLPPEVDSE--TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1036
++DS + E+++ + + L V LS + +R+ IA L+ +
Sbjct: 425 ----SKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRD 475
Query: 1037 PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
I +DEP++ LD V R +++ +E +
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 48/254 (18%)
Query: 860 LPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 919
L F+ + F+ V +S + D L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFS------------YADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 920 TLM-------DVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQ-----NDIHSPLV 967
T++ D+ +G L+ G Q ND
Sbjct: 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH------IGVVPQDTVLFND------ 142
Query: 968 TVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026
T+ +++ Y EV++ + I + IM E ++ VG G+ LS +++R
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY---RTQVGERGLK-LSGGEKQR 198
Query: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESF 1086
+ IA ++ P II +DE TS LD + ++ V RT + H+ S + +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLSTVV--NA 255
Query: 1087 DEAIPGVQKIKDGC 1100
D+ + IKDGC
Sbjct: 256 DQILV----IKDGC 265
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+L G++ PG +TAL+G +G+GK+T+ +L L E +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-------QNLYQPTGGKVLLDGEPLVQY 86
Query: 954 SGYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
+ + +H+ + V E LL+ R TR +EEI + + + G
Sbjct: 87 ----DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 1013 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P G +G LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 1064 TVE-TGRTVVCTIHQPSI 1080
+ E RTV+ Q S+
Sbjct: 202 SPEWASRTVLLITQQLSL 219
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DV 924
S+ + SVD +++ + G E L G+ +F GVLT++ GVSG+GK+TL+ D+
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 925 LA 926
LA
Sbjct: 689 LA 690
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1019 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
LS + +R+ +A EL ++ +DEPT+GL ++ + V+ G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1076 HQPSIDIFESFD 1087
H ++D+ ++ D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+L G++ PG +TAL+G +G+GK+T+ +L L E +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-------QNLYQPTGGKVLLDGEPLVQY 86
Query: 954 SGYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
+ + +H+ + V E LL+ R TR +EEI + + + G
Sbjct: 87 ----DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 1013 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P G +G L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 1064 TVE-TGRTVVCTIHQPSI 1080
+ E RTV+ Q S+
Sbjct: 202 SPEWASRTVLLITQQLSL 219
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 20/201 (9%)
Query: 882 MKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXX 941
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQP 62
Query: 942 XXLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
Y Q P T W L +TR + ++ +
Sbjct: 63 LEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGAL 114
Query: 1002 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAA 1055
L + L +S L G QR RL V + ANP+ ++ +D+P + LD +
Sbjct: 115 ALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQS 170
Query: 1056 IVMRTVKNTVETGRTVVCTIH 1076
+ + + + G +V + H
Sbjct: 171 ALDKILSALSQQGLAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 882 MKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXX 941
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQP 62
Query: 942 XXLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
Y Q P T W L +TR + ++ +
Sbjct: 63 LEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGAL 114
Query: 1002 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAA 1055
L + L +S L G QR RL V + ANP+ ++ +D+P LD +
Sbjct: 115 ALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQS 170
Query: 1056 IVMRTVKNTVETGRTVVCTIH 1076
+ + + + G +V + H
Sbjct: 171 ALDKILSALSQQGLAIVMSSH 191
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 17/186 (9%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRI 953
+L +S + PG L+G +G+GK+TL+ E + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLR--LPPEV---DSETRKMFIE-EIMELVELNPLR 1007
G Q + ++S R L P D E K+ E + ++E P +
Sbjct: 96 FGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT+K
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD 204
Query: 1068 GRTVVC 1073
++C
Sbjct: 205 CTVILC 210
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 27/206 (13%)
Query: 904 PGVLTALMGVSGAGKTTLM-------DVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGY 956
G AL+G SG+GK+T+ D+ G L+ Q
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVAL------ 421
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
QN +H TV ++ Y+ + E E +M M+ + N + L + G
Sbjct: 422 VSQN-VHLFNDTVANNIAYARTEQYSREQIEEAARMAYA--MDFI--NKMDNGLDTVIGE 476
Query: 1017 SG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
+G LS QR+R+ IA L+ + I+ +DE TS LD + + + + ++ RT +
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVI 535
Query: 1075 IHQPSIDIFESFDEAIPGVQKIKDGC 1100
H+ S E DE + ++DG
Sbjct: 536 AHRLS--TIEKADEIVV----VEDGV 555
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIR 375
+D DT++G+ + +SGGQ++R+ AL L +DE ++ LD+ + +I+
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQ 520
Query: 376 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMG 428
+ L ++ T + D+I+++ DG+IV G D E G
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHN---DLLEHRG 570
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIR 375
+D DT++G+ + +SGGQ++R+ AL L +DE ++ LD+ + +I+
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQ 520
Query: 376 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421
+ L ++ T + D+I+++ DG+IV G +L
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 23/196 (11%)
Query: 904 PGVLTALMGVSGAGKTTLM-------DVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGY 956
G AL+G SG+GK+T+ D+ G L+ Q
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL------ 421
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
QN +H TV ++ Y+ E E +M M+ + N + L + G
Sbjct: 422 VSQN-VHLFNDTVANNIAYARTEEYSREQIEEAARMAYA--MDFI--NKMDNGLDTIIGE 476
Query: 1017 SG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
+G LS QR+R+ IA L+ + I+ +DE TS LD + + + + ++ RT +
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVI 535
Query: 1075 IHQPSIDIFESFDEAI 1090
H+ S E DE +
Sbjct: 536 AHRLS--TIEQADEIV 549
>pdb|2YOO|A Chain A, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|B Chain B, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|C Chain C, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|D Chain D, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|3ZBY|A Chain A, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|B Chain B, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|C Chain C, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|D Chain D, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|E Chain E, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|F Chain F, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
Length = 407
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 360 NGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA-PETYDLFDDIILLSDGLIVYLGPRE 418
NGL ++TT+Q V +N + + T I QP P D+ D LL L+ R+
Sbjct: 41 NGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRK 100
Query: 419 LVLDFFESMGFKCPE------RKGVADFLQEVTS 446
V+D +S+G C +G DF++++ +
Sbjct: 101 RVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAA 134
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 20/200 (10%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXX 942
+LQ V E L +SG R G + L+G +GAGK+TL+ AG
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPL 63
Query: 943 XLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
Y Q P T W L +TR + ++ +
Sbjct: 64 EAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALA 115
Query: 1003 L-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAI 1056
L + L +S L G QR RL V + ANP+ ++ +DEP + LD +
Sbjct: 116 LDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSA 171
Query: 1057 VMRTVKNTVETGRTVVCTIH 1076
+ + + + G +V + H
Sbjct: 172 LDKILSALCQQGLAIVXSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 20/200 (10%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXX 942
+LQ V E L +SG R G + L+G +GAGK+TL+ AG
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPL 63
Query: 943 XLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
Y Q P T W L +TR + ++ +
Sbjct: 64 EAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALA 115
Query: 1003 L-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAI 1056
L + L +S L G QR RL V + ANP+ ++ +DEP + LD +
Sbjct: 116 LDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSA 171
Query: 1057 VMRTVKNTVETGRTVVCTIH 1076
+ + + + G +V + H
Sbjct: 172 LDKILSALSQQGLAIVXSSH 191
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
E + +V LNP L P LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 135 EKLRMVRLNP-EAVLNSYP--LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
Query: 1056 IVMR 1059
+++
Sbjct: 192 HIIQ 195
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 989 TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
TRK IEE ++ L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1049 LDARAAAIVMRTVK 1062
LD + + + +K
Sbjct: 932 LDRDSLGALSKALK 945
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 295 DVFMKAAATEGQEANVL---TDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG--- 348
+V MK A GQ + + + +LGLD +V IRG+SGGQK ++
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 349 ---PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
P L + +DE +N LD + + ++++ G VI + A T +L +++
Sbjct: 917 WQRPHL-IVLDEPTNYLDRDSLGALSKALKE----FEG-GVIIITHSAEFTKNLTEEVWA 970
Query: 406 LSDG 409
+ DG
Sbjct: 971 VKDG 974
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
++ +P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 541 MIAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.9 bits (76), Expect = 0.61, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 910 LMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQETFTRISGYCEQNDIHSPLVTV 969
++G +G+GKTTL+ ++G ++K + R S + L
Sbjct: 35 ILGPNGSGKTTLLRAISG--LLPYSGNIFINGMEVRKIRNYIRYS---------TNLPEA 83
Query: 970 YE-SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKR 1026
YE + + + L E+ R +F+ E+++ ++L LR+ L L +G S R
Sbjct: 84 YEIGVTVNDIVYLYEELKGLDRDLFL-EMLKALKLGEEILRRKLYKLS--AGQSVLVRTS 140
Query: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESF 1086
L +A + P I+ +DEP +DA ++ R +K E G+ + H+ +D+ +
Sbjct: 141 LALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLY 191
Query: 1087 DE 1088
E
Sbjct: 192 KE 193
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 989 TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
TRK IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1049 LDARAAAIVMRTVK 1062
LD + + + +K
Sbjct: 932 LDRDSLGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 989 TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
TRK IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 1049 LDARAAAIVMRTVK 1062
LD + + + +K
Sbjct: 926 LDRDSLGALSKALK 939
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 18/197 (9%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKXXXXXXXXXXXXXXLKKQ 947
H + L+N VS G + A++G +GAGK+TL+ +L G Q
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79
Query: 948 -ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+ R Q +S L + S+ + P S+ R+ ++++M + L
Sbjct: 80 PKALARTRAVMRQ---YSELAFPF-SVSEVIQMGRAPYGGSQDRQA-LQQVMAQTDCLAL 134
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRT 1060
Q + LS +++R+ +A L P +F+DEPTS LD +R
Sbjct: 135 AQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 1061 VKN-TVETGRTVVCTIH 1076
++ T + V C +H
Sbjct: 190 LRQLTRQEPLAVCCVLH 206
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
+SGGQK+RV ALA L DE ++ LD +TT I+ ++ +I+ G ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLTILLITH 199
Query: 392 PAPETYDLFDDIILLSDGLIV 412
+ D + ++S+G ++
Sbjct: 200 EMDVVKRICDCVAVISNGELI 220
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
QR RL + I +DEPT GL R +++T+K + G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+G P + LS + +R+ +A EL + + +DEPT GL ++ + V+
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1068 GRTVVCTIHQPSIDIFESFDEAI 1090
G TV+ H ++D+ ++ D I
Sbjct: 858 GNTVIVIEH--NLDVIKNADHII 878
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 331 DEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385
D +SGGQK+RV ALA L D+ ++ LD +TT I+ ++ +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 386 VISLLQPAPETYDLFDDIILLSDGLIV 412
++ + + D + ++S+G ++
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELI 243
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1011 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1068 GRTVVCTIHQPSIDIFESFD 1087
G TV+ H ++D+ ++ D
Sbjct: 898 GDTVLVIEH--NLDVIKTAD 915
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1011 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1068 GRTVVCTIHQPSIDIFESFD 1087
G TV+ H ++D+ ++ D
Sbjct: 898 GDTVLVIEH--NLDVIKTAD 915
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1011 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + V+
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1068 GRTVVCTIHQPSIDIFESFD 1087
G TV+ H ++D+ ++ D
Sbjct: 596 GDTVLVIEH--NLDVIKTAD 613
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
+SGGQK+RV ALA L D+ ++ LD +TT I+ ++ +I+ G ++ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLITH 222
Query: 392 PAPETYDLFDDIILLSDGLIV 412
+ D + ++S+G ++
Sbjct: 223 EMDVVKRICDCVAVISNGELI 243
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 988 ETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE----QRKRLTIAVELVANP---SII 1040
E F +E L+ LR+ +G + +TE + +R+ +A EL + ++
Sbjct: 696 EAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY 755
Query: 1041 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
+DEPT+GL + R + V+ G TV+ H+
Sbjct: 756 VLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3GBM|B Chain B, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|D Chain D, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|4FQI|B Chain B, Crystal Structure Of Fab Cr9114 In Complex With A H5n1
Influenza Virus Hemagglutinin
Length = 177
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 62 TNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVR 121
+N G AD ST QK ID + + + + K+ +F+AVG + +E R
Sbjct: 27 SNEQGSGYAADKEST------QKAIDGVTNKVN----SIIDKMNTQFEAVGREFNNLERR 76
Query: 122 YENLNVEAE 130
ENLN + E
Sbjct: 77 IENLNKKME 85
>pdb|2IBX|B Chain B, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|D Chain D, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|F Chain F, Influenza Virus (Vn1194) H5 Ha
Length = 160
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 62 TNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVR 121
+N G AD ST QK ID + + + + K+ +F+AVG + +E R
Sbjct: 27 SNEQGSGYAADKEST------QKAIDGVTNKVN----SIIDKMNTQFEAVGREFNNLERR 76
Query: 122 YENLNVEAE 130
ENLN + E
Sbjct: 77 IENLNKKME 85
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 929
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,657,867
Number of Sequences: 62578
Number of extensions: 1463394
Number of successful extensions: 3570
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3325
Number of HSP's gapped (non-prelim): 243
length of query: 1436
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1325
effective length of database: 8,027,179
effective search space: 10636012175
effective search space used: 10636012175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)