Query 038815
Match_columns 1436
No_of_seqs 781 out of 6630
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.1E-62 3.6E-67 671.8 54.1 200 865-1088 1075-1284(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2.5E-59 8.5E-64 637.1 50.9 200 865-1088 1029-1238(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 5.3E-51 1.8E-55 513.5 29.6 184 866-1088 357-541 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-50 4E-55 505.8 27.8 184 866-1088 287-471 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 3.3E-49 1.1E-53 491.1 28.2 173 893-1088 282-455 (538)
6 2iw3_A Elongation factor 3A; a 100.0 1.4E-48 4.8E-53 504.8 34.4 184 172-420 442-633 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-48 9.3E-53 500.0 29.7 209 177-420 30-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 2.7E-47 9.4E-52 478.6 25.4 171 893-1088 361-537 (608)
9 3fvq_A Fe(3+) IONS import ATP- 100.0 4.6E-38 1.6E-42 369.3 23.5 211 168-421 7-227 (359)
10 3rlf_A Maltose/maltodextrin im 100.0 1.1E-37 3.8E-42 368.3 25.2 210 169-421 7-222 (381)
11 3tui_C Methionine import ATP-b 100.0 1.7E-37 5.7E-42 364.4 24.3 202 177-421 40-252 (366)
12 3tif_A Uncharacterized ABC tra 100.0 2.8E-37 9.7E-42 346.0 23.1 204 867-1088 2-214 (235)
13 2yyz_A Sugar ABC transporter, 100.0 7.7E-37 2.6E-41 360.2 25.1 210 169-421 7-222 (359)
14 1z47_A CYSA, putative ABC-tran 100.0 8.3E-37 2.8E-41 359.0 24.4 210 169-421 18-234 (355)
15 2it1_A 362AA long hypothetical 100.0 8.9E-37 3E-41 360.1 24.6 210 169-421 7-222 (362)
16 2pcj_A ABC transporter, lipopr 100.0 8.4E-37 2.9E-41 339.8 22.7 197 867-1088 5-208 (224)
17 3tui_C Methionine import ATP-b 100.0 9.7E-37 3.3E-41 357.9 24.2 203 866-1088 24-233 (366)
18 2olj_A Amino acid ABC transpor 100.0 2.1E-36 7.2E-41 343.5 24.6 210 168-421 27-247 (263)
19 2pcj_A ABC transporter, lipopr 100.0 1.3E-36 4.4E-41 338.3 22.3 204 169-417 8-223 (224)
20 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-36 4.7E-41 357.0 23.7 218 170-442 6-229 (348)
21 1g29_1 MALK, maltose transport 100.0 1.7E-36 5.9E-41 359.7 24.6 210 169-421 7-228 (372)
22 4g1u_C Hemin import ATP-bindin 100.0 2.8E-36 9.4E-41 343.6 25.0 209 168-421 14-236 (266)
23 3rlf_A Maltose/maltodextrin im 100.0 1.9E-36 6.3E-41 357.9 24.3 199 866-1088 3-203 (381)
24 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-36 5.1E-41 346.7 22.0 211 169-422 11-233 (275)
25 1v43_A Sugar-binding transport 100.0 1.4E-36 4.7E-41 359.7 22.5 210 169-421 15-230 (372)
26 2olj_A Amino acid ABC transpor 100.0 2.3E-36 7.7E-41 343.3 23.2 199 866-1088 24-228 (263)
27 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-36 5.1E-41 356.4 22.3 199 866-1088 4-208 (359)
28 1b0u_A Histidine permease; ABC 100.0 1.7E-36 5.7E-41 345.2 22.0 209 169-421 10-241 (262)
29 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-36 8.2E-41 345.0 23.0 200 866-1088 7-213 (275)
30 1b0u_A Histidine permease; ABC 100.0 2.4E-36 8.2E-41 343.8 22.5 199 866-1088 6-222 (262)
31 3tif_A Uncharacterized ABC tra 100.0 2.8E-36 9.5E-41 338.0 22.4 203 177-420 17-232 (235)
32 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-36 5.7E-41 357.7 21.4 209 170-421 8-229 (353)
33 1vpl_A ABC transporter, ATP-bi 100.0 4.7E-36 1.6E-40 339.6 23.2 210 169-422 19-235 (256)
34 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-36 2E-40 338.9 23.7 199 866-1088 15-215 (256)
35 1g6h_A High-affinity branched- 100.0 2.8E-36 9.5E-41 342.7 20.6 220 169-419 11-239 (257)
36 1ji0_A ABC transporter; ATP bi 100.0 5.4E-36 1.8E-40 336.9 21.9 208 169-421 10-227 (240)
37 1g6h_A High-affinity branched- 100.0 4.9E-36 1.7E-40 340.7 21.5 202 866-1088 7-222 (257)
38 1z47_A CYSA, putative ABC-tran 100.0 5E-36 1.7E-40 352.3 21.5 200 866-1088 14-215 (355)
39 2yyz_A Sugar ABC transporter, 100.0 7.5E-36 2.6E-40 351.8 22.3 198 867-1088 4-203 (359)
40 2it1_A 362AA long hypothetical 100.0 9.3E-36 3.2E-40 351.4 23.0 198 867-1088 4-203 (362)
41 1g29_1 MALK, maltose transport 100.0 1.5E-35 5.1E-40 351.7 24.6 198 867-1088 4-209 (372)
42 1ji0_A ABC transporter; ATP bi 100.0 9.2E-36 3.1E-40 335.0 21.1 198 866-1088 6-208 (240)
43 1sgw_A Putative ABC transporte 100.0 9.5E-36 3.3E-40 327.8 20.1 185 866-1079 10-194 (214)
44 2onk_A Molybdate/tungstate ABC 100.0 1.9E-35 6.4E-40 331.7 22.3 196 180-421 14-215 (240)
45 1v43_A Sugar-binding transport 100.0 1.3E-35 4.3E-40 351.5 21.5 198 867-1088 12-211 (372)
46 1oxx_K GLCV, glucose, ABC tran 100.0 8.2E-36 2.8E-40 351.8 19.6 198 867-1088 4-210 (353)
47 4g1u_C Hemin import ATP-bindin 100.0 1.3E-35 4.5E-40 338.1 20.1 197 866-1088 11-217 (266)
48 2d2e_A SUFC protein; ABC-ATPas 100.0 4.9E-35 1.7E-39 331.1 21.4 195 867-1079 4-204 (250)
49 2yz2_A Putative ABC transporte 100.0 4.1E-35 1.4E-39 334.6 20.8 202 867-1088 3-207 (266)
50 3d31_A Sulfate/molybdate ABC t 100.0 3.4E-35 1.2E-39 345.2 20.3 194 867-1088 2-197 (348)
51 3pih_A Uvrabc system protein A 100.0 9.6E-35 3.3E-39 376.4 25.1 180 894-1088 599-876 (916)
52 2yz2_A Putative ABC transporte 100.0 7.2E-35 2.5E-39 332.6 20.5 200 178-422 20-227 (266)
53 3nh6_A ATP-binding cassette SU 100.0 6.3E-35 2.2E-39 337.3 20.2 204 177-422 66-277 (306)
54 2onk_A Molybdate/tungstate ABC 100.0 7.9E-35 2.7E-39 326.6 20.4 181 894-1088 14-196 (240)
55 2ihy_A ABC transporter, ATP-bi 100.0 6E-35 2.1E-39 334.7 18.7 203 865-1088 20-232 (279)
56 2zu0_C Probable ATP-dependent 100.0 3.4E-34 1.2E-38 327.0 24.0 197 866-1079 20-225 (267)
57 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-35 2.7E-39 333.7 18.7 214 168-420 24-250 (279)
58 2nq2_C Hypothetical ABC transp 100.0 3.6E-34 1.2E-38 324.0 23.3 192 867-1088 5-198 (253)
59 2r6f_A Excinuclease ABC subuni 100.0 7.5E-34 2.6E-38 364.2 28.0 179 894-1088 639-916 (972)
60 2ff7_A Alpha-hemolysin translo 100.0 2.9E-34 9.8E-39 323.9 20.3 196 177-421 21-231 (247)
61 2d2e_A SUFC protein; ABC-ATPas 100.0 1.7E-34 5.8E-39 326.7 18.1 208 170-419 8-230 (250)
62 2ff7_A Alpha-hemolysin translo 100.0 2.8E-34 9.5E-39 324.0 18.4 197 865-1088 6-212 (247)
63 3nh6_A ATP-binding cassette SU 100.0 2.7E-34 9.4E-39 332.0 18.5 197 864-1088 51-257 (306)
64 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-34 1.2E-38 322.9 18.9 178 894-1088 15-202 (249)
65 2nq2_C Hypothetical ABC transp 100.0 1.3E-33 4.6E-38 319.4 23.4 200 170-420 9-215 (253)
66 2ixe_A Antigen peptide transpo 100.0 6.2E-34 2.1E-38 325.4 19.5 203 178-421 32-244 (271)
67 2ixe_A Antigen peptide transpo 100.0 2.2E-34 7.7E-39 329.0 14.9 199 866-1088 16-225 (271)
68 2zu0_C Probable ATP-dependent 100.0 1.3E-33 4.5E-38 322.1 20.9 225 168-430 23-261 (267)
69 2vf7_A UVRA2, excinuclease ABC 100.0 1.6E-33 5.6E-38 362.1 23.7 90 992-1088 708-801 (842)
70 1mv5_A LMRA, multidrug resista 100.0 3.9E-34 1.3E-38 322.4 15.6 198 176-421 13-225 (243)
71 2pjz_A Hypothetical protein ST 100.0 2.1E-33 7.3E-38 318.8 18.8 189 178-421 18-214 (263)
72 2qi9_C Vitamin B12 import ATP- 100.0 4E-33 1.4E-37 314.3 20.8 192 179-420 14-220 (249)
73 1mv5_A LMRA, multidrug resista 100.0 5.8E-34 2E-38 321.0 13.5 196 867-1089 2-207 (243)
74 2ygr_A Uvrabc system protein A 100.0 2.1E-32 7E-37 352.4 27.7 179 894-1088 657-934 (993)
75 2ghi_A Transport protein; mult 100.0 5.6E-33 1.9E-37 315.7 19.4 194 178-421 33-241 (260)
76 2ghi_A Transport protein; mult 100.0 3.7E-33 1.3E-37 317.2 17.1 196 866-1088 17-222 (260)
77 3gd7_A Fusion complex of cysti 100.0 1E-33 3.5E-38 337.2 13.0 203 169-421 23-241 (390)
78 2pjz_A Hypothetical protein ST 100.0 1.2E-32 3.9E-37 312.8 19.7 191 867-1088 2-195 (263)
79 1sgw_A Putative ABC transporte 100.0 2.7E-33 9.2E-38 308.3 13.7 192 169-411 14-210 (214)
80 2pze_A Cystic fibrosis transme 100.0 3.4E-32 1.2E-36 303.8 19.7 192 177-421 20-217 (229)
81 2cbz_A Multidrug resistance-as 100.0 1.3E-32 4.4E-37 308.6 15.4 194 177-421 17-216 (237)
82 2pze_A Cystic fibrosis transme 100.0 5.7E-32 2E-36 301.9 15.8 185 866-1088 6-198 (229)
83 3gd7_A Fusion complex of cysti 100.0 1.7E-32 5.8E-37 326.7 12.2 196 865-1088 18-222 (390)
84 2cbz_A Multidrug resistance-as 100.0 8.6E-32 2.9E-36 301.9 17.0 184 867-1088 4-197 (237)
85 3qf4_A ABC transporter, ATP-bi 100.0 1E-31 3.5E-36 339.7 19.2 204 177-422 355-566 (587)
86 3b60_A Lipid A export ATP-bind 100.0 1.4E-31 4.8E-36 338.9 20.5 197 178-422 356-567 (582)
87 4a82_A Cystic fibrosis transme 100.0 1.7E-31 5.8E-36 337.6 21.0 204 177-422 353-564 (578)
88 3b5x_A Lipid A export ATP-bind 100.0 1.6E-31 5.4E-36 338.4 19.6 196 178-421 356-566 (582)
89 2yl4_A ATP-binding cassette SU 100.0 1.9E-31 6.5E-36 338.6 20.3 198 178-421 357-569 (595)
90 2yl4_A ATP-binding cassette SU 100.0 3.1E-31 1.1E-35 336.6 19.7 199 867-1088 342-550 (595)
91 3b60_A Lipid A export ATP-bind 100.0 2.4E-31 8.2E-36 336.8 18.1 198 865-1088 340-547 (582)
92 3qf4_B Uncharacterized ABC tra 100.0 3.4E-31 1.2E-35 336.0 18.9 204 177-422 367-578 (598)
93 3b5x_A Lipid A export ATP-bind 100.0 2.2E-31 7.4E-36 337.2 16.5 198 865-1088 340-547 (582)
94 4a82_A Cystic fibrosis transme 100.0 2.7E-31 9.1E-36 335.9 16.8 197 865-1088 338-544 (578)
95 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-31 4.9E-36 338.4 12.2 197 865-1088 340-546 (587)
96 3qf4_B Uncharacterized ABC tra 100.0 4.6E-31 1.6E-35 334.8 13.9 197 865-1089 353-559 (598)
97 2bbs_A Cystic fibrosis transme 100.0 2.7E-30 9.3E-35 297.2 16.9 190 178-421 51-246 (290)
98 4f4c_A Multidrug resistance pr 100.0 3.7E-30 1.3E-34 351.6 17.5 206 177-422 1091-1304(1321)
99 2bbs_A Cystic fibrosis transme 100.0 6.7E-30 2.3E-34 294.0 14.5 181 866-1089 40-228 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 1.1E-28 3.8E-33 336.2 19.7 205 178-422 1046-1258(1284)
101 3bk7_A ABC transporter ATP-bin 99.9 1.9E-27 6.4E-32 299.5 18.9 186 180-422 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 99.9 2.4E-27 8.1E-32 295.8 17.1 186 180-422 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 99.9 1E-26 3.5E-31 289.3 19.0 187 180-421 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 99.9 3.2E-26 1.1E-30 287.7 18.9 188 178-422 360-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 99.9 1.2E-27 3.9E-32 299.6 1.1 138 899-1078 275-417 (525)
106 3ux8_A Excinuclease ABC, A sub 99.9 4.6E-26 1.6E-30 293.2 10.1 188 892-1088 31-272 (670)
107 2iw3_A Elongation factor 3A; a 99.9 4E-25 1.4E-29 286.5 18.6 178 866-1088 435-614 (986)
108 3pih_A Uvrabc system protein A 99.9 3E-22 1E-26 259.8 22.1 104 311-421 784-901 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 2.4E-22 8.2E-27 258.2 16.7 102 312-421 825-941 (972)
110 2ygr_A Uvrabc system protein A 99.9 6.7E-22 2.3E-26 255.1 17.3 103 312-422 843-960 (993)
111 2vf7_A UVRA2, excinuclease ABC 99.9 9.4E-22 3.2E-26 253.3 16.5 103 311-421 709-826 (842)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 9.8E-24 3.3E-28 257.4 -2.8 181 182-421 129-337 (460)
113 4aby_A DNA repair protein RECN 99.9 3.1E-22 1.1E-26 243.7 10.3 191 893-1088 49-364 (415)
114 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.4E-23 4.9E-28 255.9 -5.2 168 896-1088 129-313 (460)
115 3b85_A Phosphate starvation-in 99.8 6.4E-24 2.2E-28 232.9 -10.0 163 891-1111 12-179 (208)
116 4gp7_A Metallophosphoesterase; 99.8 2.5E-21 8.7E-26 206.2 3.7 143 897-1079 1-160 (171)
117 4aby_A DNA repair protein RECN 99.8 2.8E-20 9.5E-25 226.4 13.1 232 177-415 47-381 (415)
118 1tq4_A IIGP1, interferon-induc 99.8 1.5E-21 5E-26 234.0 -6.9 169 892-1088 36-246 (413)
119 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 5E-19 1.7E-23 210.9 14.5 71 1016-1088 277-353 (365)
120 1e69_A Chromosome segregation 99.8 1.8E-19 6E-24 211.7 8.7 70 1016-1088 217-290 (322)
121 1ye8_A Protein THEP1, hypothet 99.8 1E-19 3.5E-24 194.7 2.9 128 907-1077 2-139 (178)
122 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 6.1E-18 2.1E-22 201.5 15.4 79 332-413 275-364 (365)
123 3sop_A Neuronal-specific septi 99.7 5.6E-20 1.9E-24 209.8 -5.5 147 907-1078 4-150 (270)
124 3b85_A Phosphate starvation-in 99.7 3.9E-20 1.3E-24 202.8 -6.7 149 172-396 7-161 (208)
125 1tq4_A IIGP1, interferon-induc 99.7 9.5E-20 3.2E-24 218.4 -5.8 172 178-409 36-254 (413)
126 2v9p_A Replication protein E1; 99.7 1.3E-20 4.5E-25 217.0 -13.2 154 178-427 113-271 (305)
127 1znw_A Guanylate kinase, GMP k 99.7 1.4E-20 4.8E-25 206.8 -12.8 176 892-1089 9-198 (207)
128 1e69_A Chromosome segregation 99.7 1.9E-17 6.6E-22 194.3 9.2 82 333-418 216-309 (322)
129 3b9q_A Chloroplast SRP recepto 99.7 5.4E-19 1.9E-23 204.7 -4.0 155 895-1078 90-257 (302)
130 3sop_A Neuronal-specific septi 99.7 1.1E-18 3.7E-23 199.2 -2.1 143 193-390 4-148 (270)
131 1z6g_A Guanylate kinase; struc 99.7 3.3E-20 1.1E-24 205.5 -15.5 176 892-1090 10-205 (218)
132 1ye8_A Protein THEP1, hypothet 99.7 5.3E-18 1.8E-22 181.4 0.7 141 193-413 2-159 (178)
133 4gp7_A Metallophosphoesterase; 99.7 1.6E-17 5.5E-22 176.8 4.3 61 336-398 83-164 (171)
134 2dpy_A FLII, flagellum-specifi 99.7 1.5E-18 5E-23 210.7 -5.2 178 177-420 144-342 (438)
135 2og2_A Putative signal recogni 99.7 3E-18 1E-22 202.0 -2.8 153 896-1077 148-313 (359)
136 2pt7_A CAG-ALFA; ATPase, prote 99.7 3E-17 1E-21 192.6 4.5 123 894-1088 160-283 (330)
137 1znw_A Guanylate kinase, GMP k 99.6 6.5E-19 2.2E-23 193.5 -10.3 185 177-407 8-202 (207)
138 3qkt_A DNA double-strand break 99.6 8.6E-16 2.9E-20 181.5 15.4 71 1016-1088 246-322 (339)
139 1z6g_A Guanylate kinase; struc 99.6 6.7E-19 2.3E-23 195.0 -11.7 151 178-379 10-175 (218)
140 3b9q_A Chloroplast SRP recepto 99.6 2.5E-17 8.5E-22 190.8 -2.0 169 181-411 90-284 (302)
141 2jeo_A Uridine-cytidine kinase 99.6 5.2E-17 1.8E-21 183.1 -2.4 155 890-1077 10-164 (245)
142 3aez_A Pantothenate kinase; tr 99.6 2.4E-17 8.1E-22 191.8 -5.8 123 902-1051 87-209 (312)
143 2dpy_A FLII, flagellum-specifi 99.6 1.2E-16 4.2E-21 193.9 -1.8 159 892-1088 145-324 (438)
144 2v9p_A Replication protein E1; 99.6 4.7E-18 1.6E-22 195.7 -13.9 119 893-1058 114-233 (305)
145 2o5v_A DNA replication and rep 99.6 3.8E-15 1.3E-19 175.9 9.9 81 331-420 259-354 (359)
146 2og2_A Putative signal recogni 99.6 2E-16 6.7E-21 186.5 -1.5 168 182-411 148-341 (359)
147 1cr0_A DNA primase/helicase; R 99.5 7.5E-16 2.6E-20 178.6 2.2 164 893-1078 23-197 (296)
148 2eyu_A Twitching motility prot 99.5 3.4E-15 1.2E-19 169.5 6.9 125 894-1088 16-141 (261)
149 3aez_A Pantothenate kinase; tr 99.5 3.4E-16 1.2E-20 182.1 -4.0 118 188-364 87-209 (312)
150 2o5v_A DNA replication and rep 99.5 3E-14 1E-18 168.2 12.4 57 1018-1077 265-330 (359)
151 3asz_A Uridine kinase; cytidin 99.5 9.3E-17 3.2E-21 176.5 -8.8 149 902-1082 3-165 (211)
152 2obl_A ESCN; ATPase, hydrolase 99.5 1.7E-15 6E-20 178.4 0.5 180 177-420 58-253 (347)
153 1cr0_A DNA primase/helicase; R 99.5 2.6E-15 8.8E-20 174.1 1.5 182 177-411 21-237 (296)
154 2jeo_A Uridine-cytidine kinase 99.5 2E-15 6.8E-20 170.2 -0.0 136 176-365 10-149 (245)
155 3thx_B DNA mismatch repair pro 99.5 9.6E-15 3.3E-19 190.2 5.9 144 891-1088 659-804 (918)
156 3qkt_A DNA double-strand break 99.5 1.5E-13 5E-18 162.4 14.9 73 332-407 244-327 (339)
157 2pt7_A CAG-ALFA; ATPase, prote 99.5 3.2E-15 1.1E-19 175.5 -0.7 49 180-231 160-208 (330)
158 2ehv_A Hypothetical protein PH 99.5 2.6E-15 9E-20 169.0 -1.5 151 900-1081 25-185 (251)
159 2o8b_B DNA mismatch repair pro 99.5 5.4E-15 1.9E-19 195.6 1.0 135 892-1079 769-913 (1022)
160 1ewq_A DNA mismatch repair pro 99.5 2.2E-14 7.5E-19 184.4 6.2 128 892-1079 566-699 (765)
161 3thx_A DNA mismatch repair pro 99.5 1.1E-13 3.6E-18 181.0 12.4 142 891-1088 648-793 (934)
162 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 4.3E-14 1.5E-18 146.0 6.9 71 1016-1088 55-131 (148)
163 2qnr_A Septin-2, protein NEDD5 99.5 8.6E-16 2.9E-20 178.3 -6.9 157 890-1079 9-168 (301)
164 1rj9_A FTSY, signal recognitio 99.4 5.8E-15 2E-19 171.0 -2.0 149 904-1079 101-259 (304)
165 2qnr_A Septin-2, protein NEDD5 99.4 5.4E-15 1.9E-19 171.5 -2.4 161 171-393 4-167 (301)
166 1nlf_A Regulatory protein REPA 99.4 1.9E-13 6.5E-18 157.0 10.0 151 901-1079 26-182 (279)
167 4ad8_A DNA repair protein RECN 99.4 1.9E-13 6.5E-18 170.6 10.1 73 333-409 393-473 (517)
168 4a74_A DNA repair and recombin 99.4 2.2E-14 7.4E-19 159.3 -0.2 137 900-1080 20-182 (231)
169 3thx_A DNA mismatch repair pro 99.4 2E-13 6.7E-18 178.5 8.2 83 336-420 721-811 (934)
170 1wb9_A DNA mismatch repair pro 99.4 8.1E-14 2.8E-18 180.2 4.6 142 892-1088 595-738 (800)
171 2obl_A ESCN; ATPase, hydrolase 99.4 8.8E-14 3E-18 163.9 4.2 160 892-1088 59-235 (347)
172 1pzn_A RAD51, DNA repair and r 99.4 2.9E-14 9.8E-19 168.8 -1.4 143 894-1079 119-287 (349)
173 4a74_A DNA repair and recombin 99.4 7E-14 2.4E-18 155.2 1.3 160 186-409 20-200 (231)
174 3jvv_A Twitching mobility prot 99.3 3.9E-13 1.3E-17 158.9 5.8 121 901-1088 119-239 (356)
175 2ehv_A Hypothetical protein PH 99.3 2E-14 7E-19 161.7 -5.1 58 348-407 134-206 (251)
176 1tf7_A KAIC; homohexamer, hexa 99.3 6.1E-13 2.1E-17 166.4 7.7 150 185-410 275-444 (525)
177 3asz_A Uridine kinase; cytidin 99.3 5.4E-14 1.8E-18 154.4 -2.3 140 188-391 3-160 (211)
178 1pui_A ENGB, probable GTP-bind 99.3 5.7E-14 2E-18 153.6 -2.5 166 894-1070 17-202 (210)
179 2i3b_A HCR-ntpase, human cance 99.3 2.3E-14 7.8E-19 154.6 -5.9 139 905-1079 1-150 (189)
180 1pzn_A RAD51, DNA repair and r 99.3 8.6E-14 2.9E-18 164.7 -2.0 175 180-417 119-310 (349)
181 3szr_A Interferon-induced GTP- 99.3 5.5E-14 1.9E-18 178.1 -4.9 160 194-422 48-237 (608)
182 2i3b_A HCR-ntpase, human cance 99.3 1.9E-14 6.5E-19 155.2 -7.8 154 191-415 1-169 (189)
183 2qag_C Septin-7; cell cycle, c 99.3 9.5E-14 3.2E-18 167.1 -3.4 150 892-1078 24-177 (418)
184 3thx_B DNA mismatch repair pro 99.3 1.2E-12 4.3E-17 170.4 6.6 77 335-413 734-816 (918)
185 3szr_A Interferon-induced GTP- 99.3 3E-13 1E-17 171.3 0.5 136 908-1079 48-197 (608)
186 2o8b_B DNA mismatch repair pro 99.3 2.1E-13 7.3E-18 180.4 -1.2 156 176-418 767-938 (1022)
187 2w0m_A SSO2452; RECA, SSPF, un 99.3 4.5E-13 1.6E-17 148.7 0.2 160 893-1088 10-185 (235)
188 1s96_A Guanylate kinase, GMP k 99.2 1.9E-13 6.6E-18 150.9 -4.3 127 900-1079 11-141 (219)
189 2qag_B Septin-6, protein NEDD5 99.2 3.5E-13 1.2E-17 161.3 -2.5 167 895-1077 30-218 (427)
190 2w0m_A SSO2452; RECA, SSPF, un 99.2 6.5E-13 2.2E-17 147.4 -0.7 166 178-409 9-192 (235)
191 1wb9_A DNA mismatch repair pro 99.2 1E-12 3.5E-17 170.0 0.8 153 177-415 594-751 (800)
192 2eyu_A Twitching motility prot 99.2 1.6E-12 5.3E-17 147.6 1.7 50 179-232 15-64 (261)
193 1htw_A HI0065; nucleotide-bind 99.2 2.3E-13 7.8E-18 142.4 -4.9 80 176-262 18-97 (158)
194 1ewq_A DNA mismatch repair pro 99.2 2.1E-12 7.2E-17 166.1 2.3 128 177-400 565-704 (765)
195 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 9.3E-12 3.2E-16 128.5 6.7 77 331-410 52-141 (148)
196 1zp6_A Hypothetical protein AT 99.2 1E-13 3.4E-18 149.6 -8.6 154 901-1076 5-159 (191)
197 1w1w_A Structural maintenance 99.2 4.5E-11 1.5E-15 145.8 12.0 70 335-407 332-410 (430)
198 1s96_A Guanylate kinase, GMP k 99.2 1.1E-12 3.7E-17 144.9 -2.2 148 186-424 11-162 (219)
199 1rj9_A FTSY, signal recognitio 99.2 9.5E-13 3.2E-17 152.4 -2.8 71 190-263 101-180 (304)
200 2ewv_A Twitching motility prot 99.2 8.7E-12 3E-16 148.7 5.3 125 894-1088 127-252 (372)
201 1nij_A Hypothetical protein YJ 99.2 2.4E-14 8.1E-19 167.6 -18.2 156 906-1079 5-190 (318)
202 3kta_B Chromosome segregation 99.1 3.8E-11 1.3E-15 127.2 7.7 71 1016-1089 62-136 (173)
203 1nlf_A Regulatory protein REPA 99.1 2.3E-11 7.7E-16 139.7 6.4 151 187-395 26-183 (279)
204 2cvh_A DNA repair and recombin 99.1 1.2E-10 4E-15 128.2 10.6 137 894-1079 8-157 (220)
205 2bbw_A Adenylate kinase 4, AK4 99.1 1.3E-12 4.4E-17 147.1 -5.4 145 904-1066 26-198 (246)
206 1lw7_A Transcriptional regulat 99.1 4.4E-13 1.5E-17 160.0 -10.6 148 895-1077 158-328 (365)
207 2rcn_A Probable GTPase ENGC; Y 99.1 2.1E-11 7.3E-16 143.1 3.2 122 895-1033 206-328 (358)
208 2gza_A Type IV secretion syste 99.1 1.9E-11 6.6E-16 145.3 2.2 82 180-264 164-249 (361)
209 2gza_A Type IV secretion syste 99.1 4E-11 1.4E-15 142.5 4.9 130 894-1088 164-295 (361)
210 2bdt_A BH3686; alpha-beta prot 99.1 6.5E-13 2.2E-17 143.1 -10.6 167 191-420 2-182 (189)
211 2qag_C Septin-7; cell cycle, c 99.0 2.8E-11 9.6E-16 145.6 1.6 86 169-264 15-100 (418)
212 1udx_A The GTP-binding protein 99.0 1.3E-11 4.5E-16 148.4 -1.7 168 896-1088 148-318 (416)
213 4ad8_A DNA repair protein RECN 99.0 1.3E-10 4.6E-15 144.9 7.3 69 1017-1088 395-466 (517)
214 2f1r_A Molybdopterin-guanine d 99.0 2.3E-12 7.9E-17 136.5 -7.5 139 906-1069 3-164 (171)
215 2kjq_A DNAA-related protein; s 99.0 9.4E-11 3.2E-15 121.4 3.9 46 1034-1080 81-127 (149)
216 1lw7_A Transcriptional regulat 99.0 2.1E-13 7.3E-18 162.8 -19.0 46 180-228 157-208 (365)
217 2rcn_A Probable GTPase ENGC; Y 99.0 4.8E-11 1.6E-15 140.2 1.2 120 181-350 206-327 (358)
218 2yhs_A FTSY, cell division pro 99.0 4E-11 1.4E-15 145.1 0.0 152 896-1076 284-447 (503)
219 1htw_A HI0065; nucleotide-bind 99.0 2.1E-11 7.2E-16 127.5 -2.3 79 892-976 20-98 (158)
220 2bbw_A Adenylate kinase 4, AK4 99.0 1.4E-11 4.6E-16 138.8 -4.1 155 190-379 26-198 (246)
221 3jvv_A Twitching mobility prot 99.0 4.7E-11 1.6E-15 141.0 -0.3 48 180-231 114-161 (356)
222 2bdt_A BH3686; alpha-beta prot 99.0 8.5E-13 2.9E-17 142.3 -14.2 154 905-1089 2-167 (189)
223 1odf_A YGR205W, hypothetical 3 99.0 2.7E-11 9.4E-16 139.3 -2.7 128 903-1053 29-169 (290)
224 3ec2_A DNA replication protein 98.9 8.2E-10 2.8E-14 117.8 7.8 49 1033-1081 97-146 (180)
225 1n0w_A DNA repair protein RAD5 98.9 3.3E-10 1.1E-14 126.6 4.7 136 900-1079 19-175 (243)
226 2qm8_A GTPase/ATPase; G protei 98.9 5.1E-12 1.7E-16 148.8 -10.7 164 892-1066 42-260 (337)
227 2cvh_A DNA repair and recombin 98.9 5.7E-10 1.9E-14 122.6 6.0 59 350-409 106-185 (220)
228 3e70_C DPA, signal recognition 98.9 3.1E-11 1.1E-15 141.0 -4.4 143 902-1077 126-278 (328)
229 1pui_A ENGB, probable GTP-bind 98.9 2E-11 7E-16 133.2 -6.1 62 314-379 131-198 (210)
230 3e70_C DPA, signal recognition 98.9 1.2E-10 4.1E-15 136.1 -0.1 73 189-264 127-208 (328)
231 3kta_B Chromosome segregation 98.9 1.2E-09 3.9E-14 115.8 7.2 74 333-410 61-145 (173)
232 2qag_B Septin-6, protein NEDD5 98.9 2.3E-10 7.7E-15 137.1 2.0 162 174-376 24-203 (427)
233 2f1r_A Molybdopterin-guanine d 98.9 2.7E-11 9.1E-16 128.3 -5.4 60 192-251 3-73 (171)
234 1zp6_A Hypothetical protein AT 98.9 1E-10 3.4E-15 126.0 -1.5 70 188-264 6-76 (191)
235 3auy_A DNA double-strand break 98.9 1.5E-09 5.1E-14 129.7 8.6 70 1016-1088 278-354 (371)
236 1n0w_A DNA repair protein RAD5 98.9 1.4E-09 4.8E-14 121.4 7.1 45 186-230 19-67 (243)
237 2yhs_A FTSY, cell division pro 98.9 2.3E-10 7.8E-15 138.6 0.5 81 181-264 283-372 (503)
238 2oap_1 GSPE-2, type II secreti 98.9 2.1E-11 7.2E-16 150.7 -9.4 84 179-265 248-331 (511)
239 2yv5_A YJEQ protein; hydrolase 98.9 1.6E-10 5.5E-15 134.0 -1.4 123 901-1032 161-301 (302)
240 2yv5_A YJEQ protein; hydrolase 98.9 5.6E-10 1.9E-14 129.4 3.1 121 189-350 163-301 (302)
241 1odf_A YGR205W, hypothetical 3 98.9 3E-10 1E-14 130.7 0.7 131 189-366 29-169 (290)
242 1nij_A Hypothetical protein YJ 98.9 1.5E-11 5.3E-16 143.7 -10.4 41 192-235 5-53 (318)
243 2ewv_A Twitching motility prot 98.8 2.5E-10 8.6E-15 136.1 -1.6 63 180-247 127-189 (372)
244 3c8u_A Fructokinase; YP_612366 98.8 5.2E-11 1.8E-15 130.5 -7.1 120 902-1046 19-140 (208)
245 1w1w_A Structural maintenance 98.8 3.4E-09 1.2E-13 129.2 7.2 70 1017-1088 332-405 (430)
246 1sxj_E Activator 1 40 kDa subu 98.8 2.6E-09 8.9E-14 126.5 5.2 136 908-1080 39-176 (354)
247 1p9r_A General secretion pathw 98.8 1.6E-11 5.4E-16 147.9 -14.4 133 892-1041 156-314 (418)
248 2oap_1 GSPE-2, type II secreti 98.8 7.5E-12 2.6E-16 154.7 -18.2 171 892-1078 247-450 (511)
249 1p9r_A General secretion pathw 98.8 1.3E-10 4.4E-15 140.0 -7.3 87 173-264 151-259 (418)
250 3lda_A DNA repair protein RAD5 98.8 3.1E-09 1.1E-13 127.2 4.5 134 899-1077 172-327 (400)
251 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 3.3E-11 1.1E-15 143.6 -13.4 168 187-418 16-209 (392)
252 1in4_A RUVB, holliday junction 98.7 1.3E-10 4.3E-15 137.0 -9.4 157 176-381 29-196 (334)
253 3ec2_A DNA replication protein 98.7 1.4E-09 4.7E-14 116.1 -2.2 47 348-395 99-146 (180)
254 1u0l_A Probable GTPase ENGC; p 98.6 1E-08 3.5E-13 118.8 4.4 72 188-263 166-259 (301)
255 3lda_A DNA repair protein RAD5 98.6 1.7E-08 5.7E-13 121.0 5.0 60 350-410 274-364 (400)
256 1lvg_A Guanylate kinase, GMP k 98.6 3.9E-11 1.3E-15 130.5 -16.7 53 346-408 121-173 (198)
257 1t9h_A YLOQ, probable GTPase E 98.6 4.6E-09 1.6E-13 121.1 -0.3 118 900-1025 168-302 (307)
258 1udx_A The GTP-binding protein 98.6 4.6E-09 1.6E-13 126.3 -0.8 165 181-403 147-319 (416)
259 1t9h_A YLOQ, probable GTPase E 98.6 1.5E-08 5.1E-13 116.9 2.9 70 188-261 170-248 (307)
260 2x8a_A Nuclear valosin-contain 98.6 1.4E-10 4.8E-15 132.6 -14.0 128 892-1047 33-164 (274)
261 3c8u_A Fructokinase; YP_612366 98.6 1.9E-09 6.5E-14 118.0 -4.4 30 188-217 19-48 (208)
262 2x8a_A Nuclear valosin-contain 98.6 3.5E-10 1.2E-14 129.3 -10.8 78 178-262 33-114 (274)
263 3auy_A DNA double-strand break 98.6 1E-07 3.5E-12 113.8 9.7 92 312-407 245-359 (371)
264 1in4_A RUVB, holliday junction 98.6 5.3E-10 1.8E-14 131.6 -10.0 151 892-1067 31-195 (334)
265 1sq5_A Pantothenate kinase; P- 98.6 4E-09 1.4E-13 122.7 -2.6 74 189-267 78-156 (308)
266 3euj_A Chromosome partition pr 98.5 1.9E-08 6.7E-13 122.4 2.2 53 178-234 17-69 (483)
267 1sq5_A Pantothenate kinase; P- 98.5 1.4E-09 4.8E-14 126.5 -7.9 85 894-980 50-156 (308)
268 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.1E-09 7.2E-14 128.0 -7.3 156 901-1090 16-193 (392)
269 2kjq_A DNAA-related protein; s 98.5 1.1E-07 3.6E-12 98.4 6.1 34 179-217 29-62 (149)
270 1lvg_A Guanylate kinase, GMP k 98.5 6.9E-11 2.3E-15 128.5 -18.9 38 1029-1066 116-154 (198)
271 1u0l_A Probable GTPase ENGC; p 98.5 1.6E-08 5.4E-13 117.2 -0.2 101 901-1010 165-288 (301)
272 2qm8_A GTPase/ATPase; G protei 98.5 3.8E-09 1.3E-13 124.3 -5.9 75 176-253 40-121 (337)
273 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-07 3.8E-12 112.5 4.4 52 194-248 39-92 (354)
274 1ls1_A Signal recognition part 98.4 8.7E-07 3E-11 102.1 10.9 128 896-1075 91-219 (295)
275 1vma_A Cell division protein F 98.4 1E-07 3.5E-12 110.2 3.1 112 898-1064 97-211 (306)
276 3tr0_A Guanylate kinase, GMP k 98.3 2.3E-08 8E-13 108.5 -2.9 71 185-262 1-74 (205)
277 2dr3_A UPF0273 protein PH0284; 98.3 3.6E-08 1.2E-12 110.1 -2.1 45 1035-1079 127-174 (247)
278 1oix_A RAS-related protein RAB 98.3 5.8E-07 2E-11 96.6 7.2 144 907-1064 31-189 (191)
279 1ixz_A ATP-dependent metallopr 98.3 5.1E-10 1.7E-14 126.4 -17.9 129 892-1046 38-171 (254)
280 2r6a_A DNAB helicase, replicat 98.3 5.7E-07 2E-11 110.2 7.6 151 893-1076 191-362 (454)
281 1iy2_A ATP-dependent metallopr 98.3 1.9E-09 6.5E-14 123.5 -14.4 124 892-1039 62-190 (278)
282 3k1j_A LON protease, ATP-depen 98.3 2.3E-08 8E-13 126.9 -6.0 160 891-1063 46-227 (604)
283 2zr9_A Protein RECA, recombina 98.3 8.2E-07 2.8E-11 104.7 7.4 28 900-927 56-83 (349)
284 2ius_A DNA translocase FTSK; n 98.2 1.4E-08 4.9E-13 124.4 -9.0 160 897-1081 159-345 (512)
285 3tr0_A Guanylate kinase, GMP k 98.2 8.1E-08 2.8E-12 104.2 -2.9 68 899-972 1-71 (205)
286 3k1j_A LON protease, ATP-depen 98.2 1.3E-07 4.5E-12 120.1 -1.7 67 177-247 46-112 (604)
287 3lnc_A Guanylate kinase, GMP k 98.1 5.5E-07 1.9E-11 99.9 2.4 40 178-217 14-54 (231)
288 2dr3_A UPF0273 protein PH0284; 98.1 2.4E-06 8.2E-11 95.2 7.4 58 350-408 129-196 (247)
289 3euj_A Chromosome partition pr 98.1 3.2E-07 1.1E-11 111.7 -0.1 50 893-945 18-67 (483)
290 2f9l_A RAB11B, member RAS onco 98.1 2.6E-06 8.8E-11 91.9 5.8 38 1026-1065 129-166 (199)
291 1qhl_A Protein (cell division 98.0 1.5E-07 5E-12 104.0 -5.1 59 185-247 22-91 (227)
292 2px0_A Flagellar biosynthesis 98.0 3.7E-06 1.3E-10 96.8 6.4 53 189-262 103-155 (296)
293 2qtf_A Protein HFLX, GTP-bindi 98.0 3.1E-06 1.1E-10 100.4 5.6 151 904-1066 177-353 (364)
294 3hr8_A Protein RECA; alpha and 98.0 2.4E-06 8.4E-11 100.4 4.1 37 187-226 57-93 (356)
295 2ce7_A Cell division protein F 98.0 4.6E-06 1.6E-10 101.9 6.7 59 1021-1079 93-165 (476)
296 2r6a_A DNAB helicase, replicat 98.0 9.9E-07 3.4E-11 108.1 0.6 180 177-411 189-401 (454)
297 2ius_A DNA translocase FTSK; n 98.0 5E-07 1.7E-11 110.8 -2.4 48 183-233 159-208 (512)
298 2px0_A Flagellar biosynthesis 98.0 5.7E-06 1.9E-10 95.3 6.2 104 903-1062 103-206 (296)
299 1svm_A Large T antigen; AAA+ f 97.9 6.2E-08 2.1E-12 115.0 -10.7 142 893-1047 157-312 (377)
300 4eun_A Thermoresistant glucoki 97.9 4E-07 1.4E-11 98.7 -3.6 72 185-263 23-96 (200)
301 3lnc_A Guanylate kinase, GMP k 97.9 2.7E-06 9.4E-11 94.3 2.5 39 892-930 14-53 (231)
302 1vma_A Cell division protein F 97.9 2.8E-06 9.4E-11 98.2 2.5 44 185-231 98-141 (306)
303 2zr9_A Protein RECA, recombina 97.9 7.5E-06 2.6E-10 96.5 6.3 31 186-216 56-86 (349)
304 3hr8_A Protein RECA; alpha and 97.9 2.4E-06 8.2E-11 100.5 1.9 29 900-928 56-84 (356)
305 4eun_A Thermoresistant glucoki 97.8 1E-06 3.4E-11 95.6 -3.7 40 900-945 24-63 (200)
306 4a1f_A DNAB helicase, replicat 97.8 1.9E-05 6.4E-10 92.3 6.5 127 894-1075 35-163 (338)
307 3kta_A Chromosome segregation 97.8 9.1E-06 3.1E-10 86.3 3.5 36 182-218 18-53 (182)
308 1zu4_A FTSY; GTPase, signal re 97.7 4.5E-06 1.5E-10 97.1 0.2 81 180-263 94-187 (320)
309 1qhl_A Protein (cell division 97.7 8.7E-07 3E-11 97.8 -5.7 59 899-960 22-91 (227)
310 1ls1_A Signal recognition part 97.7 5.8E-05 2E-09 86.9 9.2 46 182-232 91-136 (295)
311 2j41_A Guanylate kinase; GMP, 97.7 1.1E-05 3.8E-10 87.3 3.1 32 187-218 2-33 (207)
312 2e87_A Hypothetical protein PH 97.7 4.3E-05 1.5E-09 90.5 7.7 61 1017-1079 230-293 (357)
313 2qtf_A Protein HFLX, GTP-bindi 97.7 3E-05 1E-09 91.8 5.8 156 193-379 181-353 (364)
314 3a00_A Guanylate kinase, GMP k 97.7 1.1E-05 3.8E-10 86.2 1.9 27 191-217 1-27 (186)
315 3uie_A Adenylyl-sulfate kinase 97.6 2.9E-06 9.9E-11 91.9 -3.5 53 177-233 11-65 (200)
316 3vaa_A Shikimate kinase, SK; s 97.6 1.7E-05 5.9E-10 85.7 2.3 40 176-215 10-49 (199)
317 4e22_A Cytidylate kinase; P-lo 97.6 5.3E-06 1.8E-10 93.4 -1.9 63 179-247 18-95 (252)
318 3nwj_A ATSK2; P loop, shikimat 97.5 8.1E-06 2.8E-10 91.6 -2.0 52 866-929 17-72 (250)
319 1kgd_A CASK, peripheral plasma 97.5 3.7E-05 1.3E-09 81.7 2.7 37 190-228 4-40 (180)
320 2xau_A PRE-mRNA-splicing facto 97.5 5.3E-05 1.8E-09 98.5 4.5 71 1017-1088 189-261 (773)
321 3nwj_A ATSK2; P loop, shikimat 97.4 1E-05 3.5E-10 90.8 -2.2 41 176-216 30-73 (250)
322 2dhr_A FTSH; AAA+ protein, hex 97.4 1.9E-06 6.5E-11 105.9 -9.0 128 894-1047 55-187 (499)
323 3vaa_A Shikimate kinase, SK; s 97.4 5.2E-05 1.8E-09 81.9 3.2 38 892-929 12-49 (199)
324 1fnn_A CDC6P, cell division co 97.4 0.00022 7.4E-09 84.9 8.5 44 1035-1079 124-170 (389)
325 3kta_A Chromosome segregation 97.4 7.9E-05 2.7E-09 79.0 3.6 32 896-928 18-49 (182)
326 2dy1_A Elongation factor G; tr 97.3 4.7E-05 1.6E-09 97.4 2.0 29 900-928 4-32 (665)
327 1iy2_A ATP-dependent metallopr 97.3 1.7E-05 5.7E-10 90.6 -2.2 48 178-232 62-109 (278)
328 2vp4_A Deoxynucleoside kinase; 97.3 6.6E-05 2.3E-09 83.1 2.7 39 187-232 16-54 (230)
329 1ixz_A ATP-dependent metallopr 97.3 3.1E-05 1.1E-09 87.0 -0.2 48 178-232 38-85 (254)
330 1ega_A Protein (GTP-binding pr 97.3 0.00066 2.2E-08 78.3 10.4 157 902-1091 6-171 (301)
331 1v5w_A DMC1, meiotic recombina 97.3 0.00063 2.2E-08 80.0 10.4 29 900-928 117-145 (343)
332 3bh0_A DNAB-like replicative h 97.3 0.00019 6.6E-09 83.3 5.9 130 894-1076 57-189 (315)
333 3t34_A Dynamin-related protein 97.3 0.00045 1.5E-08 81.8 9.0 34 893-929 25-58 (360)
334 1svm_A Large T antigen; AAA+ f 97.3 3.5E-05 1.2E-09 91.4 -0.6 44 178-227 156-199 (377)
335 1kgd_A CASK, peripheral plasma 97.3 0.00011 3.7E-09 78.1 3.2 38 903-941 3-40 (180)
336 2j41_A Guanylate kinase; GMP, 97.2 0.00012 4E-09 79.1 3.3 29 901-929 2-30 (207)
337 3a00_A Guanylate kinase, GMP k 97.2 9.3E-05 3.2E-09 79.0 2.4 26 905-930 1-26 (186)
338 4e22_A Cytidylate kinase; P-lo 97.2 3.1E-05 1.1E-09 87.0 -1.6 57 903-961 25-96 (252)
339 2vp4_A Deoxynucleoside kinase; 97.2 5.6E-05 1.9E-09 83.7 0.4 43 897-945 12-54 (230)
340 3tau_A Guanylate kinase, GMP k 97.2 0.00015 5.1E-09 78.9 3.8 29 189-217 6-34 (208)
341 1rz3_A Hypothetical protein rb 97.2 7.9E-05 2.7E-09 80.7 1.4 41 188-231 19-59 (201)
342 2z43_A DNA repair and recombin 97.2 0.00074 2.5E-08 78.7 9.7 139 900-1077 102-257 (324)
343 1knq_A Gluconate kinase; ALFA/ 97.2 0.00012 4.1E-09 77.0 2.6 37 189-232 6-42 (175)
344 1zu4_A FTSY; GTPase, signal re 97.2 5.9E-05 2E-09 87.7 0.1 49 894-944 94-142 (320)
345 2ce7_A Cell division protein F 97.2 0.00033 1.1E-08 85.6 6.5 34 180-215 40-73 (476)
346 3ney_A 55 kDa erythrocyte memb 97.1 0.00016 5.4E-09 77.8 2.7 28 189-216 17-44 (197)
347 2qt1_A Nicotinamide riboside k 97.1 0.00027 9.3E-09 76.5 4.3 44 187-253 17-60 (207)
348 3uie_A Adenylyl-sulfate kinase 97.1 7.5E-05 2.6E-09 80.7 -0.3 49 893-944 13-63 (200)
349 1oix_A RAS-related protein RAB 97.1 0.00027 9.3E-09 75.5 4.0 40 193-232 31-78 (191)
350 3b9p_A CG5977-PA, isoform A; A 97.0 0.0012 3.9E-08 75.8 9.2 69 1020-1088 97-182 (297)
351 3tau_A Guanylate kinase, GMP k 97.0 0.00028 9.7E-09 76.7 3.3 28 903-930 6-33 (208)
352 2qt1_A Nicotinamide riboside k 97.0 0.00042 1.4E-08 75.1 4.4 30 900-929 16-45 (207)
353 3cr8_A Sulfate adenylyltranfer 96.9 0.00014 4.8E-09 90.5 0.2 42 187-231 365-408 (552)
354 3tqc_A Pantothenate kinase; bi 96.9 7.5E-05 2.6E-09 86.6 -2.1 25 193-217 94-118 (321)
355 2z4s_A Chromosomal replication 96.8 0.00033 1.1E-08 85.3 2.4 46 1035-1080 193-239 (440)
356 1kag_A SKI, shikimate kinase I 96.8 0.00037 1.3E-08 72.9 2.5 27 190-216 3-29 (173)
357 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00062 2.1E-08 70.0 3.9 30 183-213 16-45 (149)
358 4a1f_A DNAB helicase, replicat 96.8 0.00055 1.9E-08 79.9 3.8 38 178-215 33-70 (338)
359 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00068 2.3E-08 69.7 4.0 28 898-926 17-44 (149)
360 3ney_A 55 kDa erythrocyte memb 96.7 0.00057 1.9E-08 73.5 3.1 28 903-930 17-44 (197)
361 2xau_A PRE-mRNA-splicing facto 96.7 0.00082 2.8E-08 87.4 5.0 69 334-403 188-262 (773)
362 2f9l_A RAB11B, member RAS onco 96.7 0.0006 2E-08 73.2 3.2 40 193-232 7-54 (199)
363 2p67_A LAO/AO transport system 96.7 0.00012 4E-09 86.2 -3.3 51 177-230 42-92 (341)
364 1knq_A Gluconate kinase; ALFA/ 96.7 0.00071 2.4E-08 71.0 3.0 35 903-943 6-40 (175)
365 2e87_A Hypothetical protein PH 96.6 0.0043 1.5E-07 73.2 9.7 53 335-389 230-287 (357)
366 2www_A Methylmalonic aciduria 96.6 0.00055 1.9E-08 80.6 1.7 41 189-232 72-112 (349)
367 2qby_A CDC6 homolog 1, cell di 96.5 0.0005 1.7E-08 81.4 0.7 26 903-928 43-68 (386)
368 2dhr_A FTSH; AAA+ protein, hex 96.5 0.00072 2.5E-08 83.0 2.1 48 179-233 54-101 (499)
369 1kag_A SKI, shikimate kinase I 96.5 0.00093 3.2E-08 69.8 2.6 26 904-929 3-28 (173)
370 2dy1_A Elongation factor G; tr 96.5 0.00083 2.8E-08 85.9 2.7 47 186-234 4-50 (665)
371 2pez_A Bifunctional 3'-phospho 96.5 0.00067 2.3E-08 71.6 1.4 40 189-232 3-44 (179)
372 2gj8_A MNME, tRNA modification 96.5 0.0029 1E-07 66.1 6.2 27 903-929 2-28 (172)
373 3cf0_A Transitional endoplasmi 96.4 0.0021 7.2E-08 74.0 5.5 29 901-929 45-73 (301)
374 1ypw_A Transitional endoplasmi 96.4 0.0017 5.7E-08 84.9 5.0 31 900-930 233-263 (806)
375 4eaq_A DTMP kinase, thymidylat 96.3 0.0011 3.9E-08 73.1 2.3 37 180-216 12-51 (229)
376 3m6a_A ATP-dependent protease 96.3 0.00029 1E-08 88.0 -2.8 48 178-229 96-143 (543)
377 2gj8_A MNME, tRNA modification 96.3 0.0029 9.9E-08 66.2 5.3 27 189-215 2-28 (172)
378 2qag_A Septin-2, protein NEDD5 96.3 0.00031 1.1E-08 83.2 -2.5 82 172-262 24-105 (361)
379 3kl4_A SRP54, signal recogniti 96.3 0.0039 1.3E-07 75.1 7.0 25 904-928 96-120 (433)
380 1rz3_A Hypothetical protein rb 96.3 0.0015 5.1E-08 70.5 3.1 28 902-929 19-46 (201)
381 1mky_A Probable GTP-binding pr 96.3 0.0028 9.6E-08 77.0 5.7 71 192-262 181-263 (439)
382 3ice_A Transcription terminati 96.3 0.00095 3.3E-08 78.1 1.3 32 897-928 166-197 (422)
383 1cke_A CK, MSSA, protein (cyti 96.3 0.00039 1.3E-08 76.3 -1.9 37 191-227 5-41 (227)
384 1fnn_A CDC6P, cell division co 96.3 0.009 3.1E-07 70.7 9.7 28 190-217 41-70 (389)
385 3tqc_A Pantothenate kinase; bi 96.2 0.00081 2.8E-08 77.9 0.3 38 892-929 73-116 (321)
386 3llm_A ATP-dependent RNA helic 96.2 0.0086 3E-07 66.1 8.4 66 1020-1087 162-228 (235)
387 2q6t_A DNAB replication FORK h 96.1 0.007 2.4E-07 73.6 8.1 124 894-1074 189-316 (444)
388 3qks_A DNA double-strand break 96.1 0.0029 1E-07 68.4 4.0 28 898-926 17-44 (203)
389 1m7g_A Adenylylsulfate kinase; 96.1 0.0013 4.4E-08 71.5 1.1 41 188-231 22-64 (211)
390 1m2o_B GTP-binding protein SAR 96.1 0.0045 1.5E-07 65.8 5.4 50 893-943 12-67 (190)
391 3qks_A DNA double-strand break 96.1 0.003 1E-07 68.3 3.9 30 183-213 16-45 (203)
392 1m2o_B GTP-binding protein SAR 96.0 0.0036 1.2E-07 66.5 4.3 34 180-214 13-46 (190)
393 4eaq_A DTMP kinase, thymidylat 96.0 0.0029 1E-07 69.8 3.5 36 894-929 12-50 (229)
394 1l8q_A Chromosomal replication 95.9 0.011 3.9E-07 68.5 8.2 47 1034-1080 96-143 (324)
395 2qor_A Guanylate kinase; phosp 95.9 0.0026 8.8E-08 68.7 2.4 29 188-216 9-37 (204)
396 1y63_A LMAJ004144AAA protein; 95.9 0.003 1E-07 67.0 2.8 32 183-214 2-33 (184)
397 2i1q_A DNA repair and recombin 95.9 0.018 6.1E-07 66.8 9.6 33 895-927 87-120 (322)
398 1f6b_A SAR1; gtpases, N-termin 95.9 0.0015 5.2E-08 70.0 0.4 35 179-214 14-48 (198)
399 1np6_A Molybdopterin-guanine d 95.8 0.0032 1.1E-07 66.4 2.6 40 192-231 7-46 (174)
400 3cr8_A Sulfate adenylyltranfer 95.8 0.0022 7.6E-08 79.7 1.6 42 901-944 365-408 (552)
401 2z4s_A Chromosomal replication 95.8 0.0023 7.8E-08 77.8 1.4 68 349-417 194-263 (440)
402 3bgw_A DNAB-like replicative h 95.8 0.0069 2.4E-07 73.6 5.7 34 894-927 186-219 (444)
403 3lxx_A GTPase IMAP family memb 95.8 0.033 1.1E-06 61.4 10.8 42 1035-1076 111-154 (239)
404 2w58_A DNAI, primosome compone 95.8 0.0061 2.1E-07 65.4 4.6 113 904-1086 53-167 (202)
405 2p67_A LAO/AO transport system 95.8 0.0019 6.4E-08 75.8 0.6 37 892-928 43-79 (341)
406 2yvu_A Probable adenylyl-sulfa 95.8 0.0028 9.5E-08 67.2 1.8 29 189-217 11-39 (186)
407 2qor_A Guanylate kinase; phosp 95.7 0.0041 1.4E-07 67.1 3.1 29 901-929 8-36 (204)
408 1mky_A Probable GTP-binding pr 95.7 0.0081 2.8E-07 72.9 6.0 38 907-944 182-229 (439)
409 2pez_A Bifunctional 3'-phospho 95.7 0.0044 1.5E-07 65.3 3.2 27 903-929 3-29 (179)
410 1u94_A RECA protein, recombina 95.7 0.015 5.2E-07 68.4 7.7 33 895-927 51-85 (356)
411 3t34_A Dynamin-related protein 95.6 0.0031 1.1E-07 74.5 1.8 34 178-214 24-57 (360)
412 3h4m_A Proteasome-activating n 95.6 0.0086 3E-07 67.9 5.4 27 903-929 49-75 (285)
413 2ffh_A Protein (FFH); SRP54, s 95.6 0.0033 1.1E-07 75.5 1.9 46 182-232 91-136 (425)
414 2p5t_B PEZT; postsegregational 95.6 0.003 1E-07 70.8 1.5 41 187-232 28-68 (253)
415 1cke_A CK, MSSA, protein (cyti 95.6 0.0049 1.7E-07 67.4 3.1 56 905-960 5-73 (227)
416 2ohf_A Protein OLA1, GTP-bindi 95.6 0.0043 1.5E-07 73.7 2.7 30 185-214 16-45 (396)
417 1jjv_A Dephospho-COA kinase; P 95.6 0.0054 1.9E-07 66.1 3.4 21 193-213 4-24 (206)
418 3m6a_A ATP-dependent protease 95.6 0.0026 8.7E-08 79.5 0.7 48 893-943 97-144 (543)
419 1y63_A LMAJ004144AAA protein; 95.5 0.0061 2.1E-07 64.6 3.5 32 897-928 2-33 (184)
420 1f6b_A SAR1; gtpases, N-termin 95.5 0.0032 1.1E-07 67.5 1.2 35 893-928 14-48 (198)
421 2wji_A Ferrous iron transport 95.5 0.014 4.7E-07 60.4 5.8 23 907-929 5-27 (165)
422 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0012 4.1E-08 76.9 -2.6 37 180-216 11-49 (359)
423 2wjg_A FEOB, ferrous iron tran 95.4 0.016 5.6E-07 60.8 6.1 22 907-928 9-30 (188)
424 2www_A Methylmalonic aciduria 95.3 0.0067 2.3E-07 71.3 3.2 26 903-928 72-97 (349)
425 1jjv_A Dephospho-COA kinase; P 95.3 0.0079 2.7E-07 64.8 3.5 54 1020-1077 61-114 (206)
426 1lv7_A FTSH; alpha/beta domain 95.3 0.0067 2.3E-07 67.8 2.9 46 180-232 36-81 (257)
427 1j8m_F SRP54, signal recogniti 95.3 0.0023 8E-08 73.4 -0.9 44 184-231 92-135 (297)
428 2if2_A Dephospho-COA kinase; a 95.3 0.0069 2.4E-07 65.1 2.9 21 193-213 3-23 (204)
429 3cm0_A Adenylate kinase; ATP-b 95.2 0.009 3.1E-07 63.0 3.5 27 189-215 2-28 (186)
430 3ice_A Transcription terminati 95.2 0.0057 2E-07 71.6 1.8 33 183-215 166-198 (422)
431 2wjg_A FEOB, ferrous iron tran 95.1 0.01 3.4E-07 62.5 3.5 22 193-214 9-30 (188)
432 1ega_A Protein (GTP-binding pr 95.1 0.0074 2.5E-07 69.4 2.5 25 191-215 8-32 (301)
433 1sxj_C Activator 1 40 kDa subu 95.1 0.0027 9.4E-08 74.3 -1.2 41 177-217 30-72 (340)
434 2qag_A Septin-2, protein NEDD5 95.0 0.0028 9.7E-08 74.9 -1.3 32 892-929 30-61 (361)
435 2wji_A Ferrous iron transport 95.0 0.012 3.9E-07 60.9 3.5 23 193-215 5-27 (165)
436 1qhx_A CPT, protein (chloramph 95.0 0.01 3.5E-07 62.1 3.0 26 191-216 3-28 (178)
437 2ga8_A Hypothetical 39.9 kDa p 95.0 0.0036 1.2E-07 72.9 -0.6 36 893-928 10-47 (359)
438 2if2_A Dephospho-COA kinase; a 94.9 0.0098 3.4E-07 63.9 2.8 21 907-927 3-23 (204)
439 2ohf_A Protein OLA1, GTP-bindi 94.9 0.012 4.1E-07 69.8 3.6 31 898-928 15-45 (396)
440 3t61_A Gluconokinase; PSI-biol 94.9 0.0098 3.3E-07 63.9 2.6 25 191-215 18-42 (202)
441 2v1u_A Cell division control p 94.8 0.025 8.4E-07 66.8 6.1 26 903-928 42-67 (387)
442 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.5E-07 60.7 3.2 24 193-216 3-26 (173)
443 3d8b_A Fidgetin-like protein 1 94.8 0.047 1.6E-06 64.3 8.3 27 903-929 115-141 (357)
444 2yvu_A Probable adenylyl-sulfa 94.7 0.014 4.9E-07 61.7 3.3 29 901-929 9-37 (186)
445 3cf0_A Transitional endoplasmi 94.7 0.011 3.6E-07 68.1 2.4 37 188-229 46-82 (301)
446 1m7g_A Adenylylsulfate kinase; 94.6 0.012 4.3E-07 63.6 2.7 29 901-929 21-49 (211)
447 2rhm_A Putative kinase; P-loop 94.6 0.015 5.1E-07 61.6 3.0 27 189-215 3-29 (193)
448 1gvn_B Zeta; postsegregational 94.5 0.016 5.6E-07 66.1 3.5 35 190-229 32-66 (287)
449 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.8E-07 62.6 2.6 24 905-928 18-41 (202)
450 1kht_A Adenylate kinase; phosp 94.5 0.018 6.1E-07 60.8 3.4 26 191-216 3-28 (192)
451 3cm0_A Adenylate kinase; ATP-b 94.4 0.018 6.1E-07 60.7 3.2 26 903-928 2-27 (186)
452 1qhx_A CPT, protein (chloramph 94.4 0.02 7E-07 59.8 3.7 25 905-929 3-27 (178)
453 3r20_A Cytidylate kinase; stru 94.4 0.018 6.3E-07 63.4 3.3 24 192-215 10-33 (233)
454 1np6_A Molybdopterin-guanine d 94.4 0.018 6.1E-07 60.7 3.0 38 906-943 7-45 (174)
455 2b8t_A Thymidine kinase; deoxy 94.4 0.033 1.1E-06 61.0 5.2 70 1036-1110 89-167 (223)
456 2zej_A Dardarin, leucine-rich 94.3 0.019 6.4E-07 60.5 3.1 23 193-215 4-26 (184)
457 1q3t_A Cytidylate kinase; nucl 94.3 0.019 6.4E-07 63.4 3.2 28 188-215 13-40 (236)
458 3kb2_A SPBC2 prophage-derived 94.3 0.021 7.2E-07 59.1 3.3 22 907-928 3-24 (173)
459 2zej_A Dardarin, leucine-rich 94.3 0.021 7.1E-07 60.1 3.3 22 907-928 4-25 (184)
460 2v54_A DTMP kinase, thymidylat 94.2 0.023 7.8E-07 60.8 3.5 26 190-215 3-28 (204)
461 3lw7_A Adenylate kinase relate 94.2 0.022 7.5E-07 58.9 3.2 19 193-211 3-21 (179)
462 3trf_A Shikimate kinase, SK; a 94.1 0.023 8E-07 59.8 3.4 26 190-215 4-29 (185)
463 2plr_A DTMP kinase, probable t 94.1 0.026 8.7E-07 60.7 3.7 28 190-217 3-30 (213)
464 1ly1_A Polynucleotide kinase; 94.1 0.025 8.6E-07 59.0 3.5 22 192-213 3-24 (181)
465 2vhj_A Ntpase P4, P4; non- hyd 94.1 0.051 1.8E-06 62.4 6.2 115 895-1081 113-239 (331)
466 1q57_A DNA primase/helicase; d 94.0 0.15 5.2E-06 62.8 10.9 33 895-927 232-264 (503)
467 3r20_A Cytidylate kinase; stru 94.0 0.025 8.7E-07 62.3 3.4 23 906-928 10-32 (233)
468 2ze6_A Isopentenyl transferase 94.0 0.024 8.2E-07 63.4 3.3 25 192-216 2-26 (253)
469 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.18 6.3E-06 58.3 10.9 105 903-1078 43-159 (322)
470 3iij_A Coilin-interacting nucl 94.0 0.023 7.9E-07 59.7 2.9 26 190-215 10-35 (180)
471 1ypw_A Transitional endoplasmi 94.0 0.017 5.7E-07 75.6 2.1 31 187-217 234-264 (806)
472 1ex7_A Guanylate kinase; subst 93.9 0.026 8.7E-07 60.1 3.2 23 907-929 3-25 (186)
473 1q3t_A Cytidylate kinase; nucl 93.9 0.025 8.7E-07 62.4 3.2 27 902-928 13-39 (236)
474 1sxj_C Activator 1 40 kDa subu 93.9 0.0064 2.2E-07 71.1 -1.8 37 893-929 32-70 (340)
475 2ze6_A Isopentenyl transferase 93.9 0.019 6.7E-07 64.2 2.2 23 907-929 3-25 (253)
476 1kht_A Adenylate kinase; phosp 93.8 0.03 1E-06 59.0 3.6 25 904-928 2-26 (192)
477 2c95_A Adenylate kinase 1; tra 93.8 0.027 9.1E-07 59.8 3.1 26 190-215 8-33 (196)
478 2wwf_A Thymidilate kinase, put 93.8 0.029 9.8E-07 60.4 3.4 27 189-215 8-34 (212)
479 2rhm_A Putative kinase; P-loop 93.8 0.029 9.8E-07 59.4 3.3 26 903-928 3-28 (193)
480 1lv7_A FTSH; alpha/beta domain 93.8 0.021 7.3E-07 63.7 2.4 33 895-929 37-69 (257)
481 1xp8_A RECA protein, recombina 93.8 0.097 3.3E-06 61.7 8.1 120 902-1076 71-209 (366)
482 1ex7_A Guanylate kinase; subst 93.7 0.026 8.9E-07 60.0 2.7 25 192-216 2-26 (186)
483 1v5w_A DMC1, meiotic recombina 93.7 0.038 1.3E-06 64.7 4.3 29 186-214 117-145 (343)
484 1aky_A Adenylate kinase; ATP:A 93.7 0.033 1.1E-06 60.6 3.5 27 189-215 2-28 (220)
485 2jaq_A Deoxyguanosine kinase; 93.7 0.032 1.1E-06 59.5 3.3 24 193-216 2-25 (205)
486 3lxx_A GTPase IMAP family memb 93.6 0.036 1.2E-06 61.1 3.8 25 193-217 31-55 (239)
487 1tev_A UMP-CMP kinase; ploop, 93.6 0.036 1.2E-06 58.5 3.6 25 191-215 3-27 (196)
488 1via_A Shikimate kinase; struc 93.6 0.032 1.1E-06 58.3 3.1 23 193-215 6-28 (175)
489 1nn5_A Similar to deoxythymidy 93.5 0.033 1.1E-06 60.0 3.2 27 189-215 7-33 (215)
490 1xjc_A MOBB protein homolog; s 93.5 0.024 8.1E-07 59.3 2.0 26 192-217 5-30 (169)
491 1vht_A Dephospho-COA kinase; s 93.5 0.036 1.2E-06 60.2 3.5 23 191-213 4-26 (218)
492 1jal_A YCHF protein; nucleotid 93.5 0.047 1.6E-06 64.1 4.6 25 191-215 2-26 (363)
493 2p5t_B PEZT; postsegregational 93.4 0.018 6.1E-07 64.4 0.9 38 901-942 28-65 (253)
494 1nks_A Adenylate kinase; therm 93.4 0.038 1.3E-06 58.2 3.3 24 193-216 3-26 (194)
495 3cmw_A Protein RECA, recombina 93.3 0.097 3.3E-06 72.4 7.9 30 187-216 728-757 (1706)
496 3trf_A Shikimate kinase, SK; a 93.3 0.042 1.4E-06 57.8 3.5 25 904-928 4-28 (185)
497 3k53_A Ferrous iron transport 93.3 0.034 1.2E-06 62.7 3.0 21 194-214 6-26 (271)
498 3co5_A Putative two-component 93.3 0.096 3.3E-06 52.9 6.0 44 1036-1080 75-118 (143)
499 2bwj_A Adenylate kinase 5; pho 93.2 0.032 1.1E-06 59.3 2.4 27 189-215 10-36 (199)
500 2v54_A DTMP kinase, thymidylat 93.2 0.047 1.6E-06 58.3 3.7 26 904-929 3-28 (204)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-62 Score=671.76 Aligned_cols=200 Identities=28% Similarity=0.394 Sum_probs=166.5
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+||++.++.. ....+|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 369999999988532 22469999999999999999999999999999999999876 457999999998
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
.+. ..+|+.++||||++.++. -||||||.|+. .|.+.+. +.++++++..++.+ -.|+.||..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 467889999999999986 59999997752 1233333 34677788777754 357788865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++. ...+|+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~ 1284 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADC 1284 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSE
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCE
Confidence 4 5899999999999999999999999999999999999999999999865 48999999999874 345676
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-59 Score=637.12 Aligned_cols=200 Identities=28% Similarity=0.389 Sum_probs=160.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++.. ....+|+|||+.++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 368999999887531 12358999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-------PLRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 1014 (1436)
... ...++.+|||+|++.+++ .||+||+.++... ...+.+ .+.+.++..++. +-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 643 346778999999997764 6999999875321 112222 234445554443 3456777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| ..|||||||||+|||+|+++|+||+|||||||||+.+...|++.|++. .+|+|||+++|+++. + ...|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSE
T ss_pred C-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCE
Confidence 3 589999999999999999999999999999999999999999999885 459999999999975 3 44777
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.3e-51 Score=513.50 Aligned_cols=184 Identities=24% Similarity=0.302 Sum_probs=150.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. + ..|+++|+.+++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 466777765432 1 258999999999999999999999999999999997653 3577764
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
.+.+||++|+....+.+||.|++....... ....+.++++++.++|.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 245899999987778899999886531100 011345788999999998887764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++|++. .+....|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adr 541 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 541 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999874 5999999999964 45666787
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-50 Score=505.80 Aligned_cols=184 Identities=25% Similarity=0.314 Sum_probs=149.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. + ..|+++|+.+++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 466777765432 1 368999999999999999999999999999999997653 3577764
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998777889999988643111100 1245778899999987777664 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||..+...|++.|+++++ .|.|||+++|++. .+....|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~dr 471 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 471 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999874 5999999999964 46667787
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.3e-49 Score=491.14 Aligned_cols=173 Identities=27% Similarity=0.276 Sum_probs=144.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
..|+++|+.+++||++||+||||||||||+++|+|... +.+|+|.+++ +.++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 35778899999999999999999999999999999765 3478888765 347999998777678899999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.+...... . . ....++++++.++|.+..+..+ ..|||||||||+||++|+.+|+||+|||||+|||+.
T Consensus 351 l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 976421111 0 1 1234688999999988877764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+++.|+++++ .|.|||+++|+.. ++....|+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDr 455 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADR 455 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999975 5899999999974 46667788
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.4e-48 Score=504.79 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=143.7
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC-CC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD-NH 250 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~ 250 (1436)
..+++.+.+|+|+|+.|++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..
T Consensus 442 s~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGT 507 (986)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCC
T ss_pred EEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEccccccc
Confidence 344456679999999999999999999999999999999995 222 3333211 12368999874 67
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLV 329 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 329 (1436)
++.+||.|++.+ ...+ . ...++.+++.+||+ +..+..
T Consensus 508 ~~~ltv~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~- 545 (986)
T 2iw3_A 508 HSDTSVLDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMP- 545 (986)
T ss_dssp CTTSBHHHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSB-
T ss_pred ccCCcHHHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCC-
Confidence 889999999975 1100 0 01245678999995 455544
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+..|||||||||+||+++ +|||||||+|||+.++.++.+.|++ .+ +++|.++|+..++.+++|+|+
T Consensus 546 ----~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g-~tvIivSHdl~~l~~~adrii 616 (986)
T 2iw3_A 546 ----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CG-ITSITISHDSVFLDNVCEYII 616 (986)
T ss_dssp ----GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SC-SEEEEECSCHHHHHHHCSEEE
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CC-CEEEEEECCHHHHHHhCCEEE
Confidence 446999999999998776 4999999999999999999999986 24 455558899999999999999
Q ss_pred EecCCeEE-EecChHHH
Q 038815 405 LLSDGLIV-YLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv-~~G~~~~~ 420 (1436)
+|++|+++ +.|+.+++
T Consensus 617 ~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 617 NYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp EEETTEEEEEESCHHHH
T ss_pred EEECCeeecCCCCHHHH
Confidence 99999997 68877654
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.7e-48 Score=499.96 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=129.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----cccEEEEcCcc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLL---------------------LALAGKLDSSLK----VSGRVTYNGHN 231 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL---------------------~~LaG~~~~~~~----~~G~I~~~G~~ 231 (1436)
..++|+|||++|++||+++|+||||||||||| +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 788888777521 25677788766
Q ss_pred CCCCCccceEEEEcCCCC-------------------CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCC
Q 038815 232 MDEFEPQRVAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292 (1436)
Q Consensus 232 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1436)
.... +++.++|++|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5322 2334555555433 24678999999874321100 000000
Q ss_pred ChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhhhh-------hhheeCCCCCCCH
Q 038815 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGPAL-------ALFMDEISNGLDS 364 (1436)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~a~-------vlllDEptsgLDs 364 (1436)
.+. ...+.... ..+++.+||++. .+.. +..|||||||||+||+|+ +|+|||||+|||+
T Consensus 172 -----~~~---~~~~~~~~-~~~l~~~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----ARL---ILREIRDR-LGFLQNVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HHH---HHHHHHHH-HHHHHHcCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000 00001111 235888999764 4444 457999999999998766 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHH
Q 038815 365 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELV 420 (1436)
Q Consensus 365 ~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~ 420 (1436)
.++.++.+.|+++.+ .+ ++||.++|+...+ ..+|+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~g-~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LG-NTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-TT-CEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999865 34 5555678888764 569999999 89999999988765
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-47 Score=478.59 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=138.9
Q ss_pred EEeeceEeeEeCC-----cEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCC
Q 038815 893 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 893 ~iL~~vs~~i~~G-----e~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 967 (1436)
.+++|+|+.+++| |++||+||||||||||+++|+|...+ .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c----cCCcEEEecccccccCCc
Confidence 4688888888888 78999999999999999999997653 24531 1 124589999987666668
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
||+|++... .+. ... ....++++++.++|.+..+..+ ..|||||||||+||++|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 111 1235678999999998888764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1048 GLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+.++..+++.|++++ +.|.|||+++|+.. ++....|+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDr 537 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADK 537 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999986 45999999999974 56667788
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.6e-38 Score=369.25 Aligned_cols=211 Identities=23% Similarity=0.350 Sum_probs=178.2
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC----CCCCc-cceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM----DEFEP-QRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~----~~~~~-~~~~~ 242 (1436)
++++.+++++.++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++ ....+ ++.++
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEE
Confidence 345566667788999999999999999999999999999999999999998 99999999987 32222 46799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
||+|+..++|.+||+||+.|+.+.++... .+.+..++++++.+||+
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~ 129 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGIS 129 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCG
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCc
Confidence 99999999999999999999865442211 01223467789999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+. ++..|||||||||+||||++ |||||||+|||+.++.++.+.++++.+.. ++++|.++|+..++.
T Consensus 130 ~~~~r-----~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 130 ELAGR-----YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEAL 203 (359)
T ss_dssp GGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHH
T ss_pred hHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 87664 45679999999999998875 99999999999999999999888876544 455666899999999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++|+|++|++|+++..|+++++.
T Consensus 204 ~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999999874
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-37 Score=368.30 Aligned_cols=210 Identities=25% Similarity=0.362 Sum_probs=180.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++...+|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecC
Confidence 44556667788999999999999999999999999999999999999998 9999999999876654 3679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~- 128 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLD- 128 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT-
T ss_pred CcCCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhc-
Confidence 99999999999999987654321 0 112334678899999987665
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+..|||||||||+||+|++ |||||||+|||+..+.++.+.|+++.+..+ +++|.++|+..++..++|+
T Consensus 129 ----r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp ----CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSE
T ss_pred ----CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCE
Confidence 455679999999999998875 999999999999999999999999876544 4555589999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 204 IVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEEeCHHHHH
Confidence 9999999999999999874
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.7e-37 Score=364.38 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=174.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 250 (1436)
.+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999997 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.|+.+..+.. + .+....++++|+.+||++.++.
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------~------------------------~~~~~~v~~lL~~vgL~~~~~~--- 159 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------K------------------------DEVKRRVTELLSLVGLGDKHDS--- 159 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------H------------------------HHHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcC---
Confidence 99999999999987654321 0 1123346788999999876654
Q ss_pred CcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++..|||||||||+||+|++ |||||||+|||+.++.++++.|+++.+..+ ++|+.++|+..++.++||+|++
T Consensus 160 --~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 160 --YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp --CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 45679999999999998874 999999999999999999999999876544 5556688999999999999999
Q ss_pred ecCCeEEEecChHHHH
Q 038815 406 LSDGLIVYLGPRELVL 421 (1436)
Q Consensus 406 L~~G~iv~~G~~~~~~ 421 (1436)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.8e-37 Score=346.00 Aligned_cols=204 Identities=24% Similarity=0.349 Sum_probs=169.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++... ..+.+|+|||+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 56788887764210 12569999999999999999999999999999999999876 35899999998754
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 038815 947 QET-------FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVSG 1018 (1436)
Q Consensus 947 ~~~-------~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 1018 (1436)
... .++.+|||+|++.+++.+||+||+.++...+.....+.++..+.+.++++.++|.+. .+.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 211 134699999999999999999999997665432234556667788999999999874 3554 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|++. +.+..|+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~ 214 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGER 214 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4467777
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-37 Score=360.18 Aligned_cols=210 Identities=26% Similarity=0.342 Sum_probs=177.1
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecC
Confidence 34455556678999999999999999999999999999999999999998 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++. .+. +.+..++++++.+||++..+.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~----------~~~------------------------~~~~~v~~~l~~~~L~~~~~r 129 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRI----------SKD------------------------EVEKRVVEIARKLLIDNLLDR 129 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCS----------HHH------------------------HTTHHHHHHHHHTTCGGGTTS
T ss_pred cccCCCCCHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCCchHhcC
Confidence 9999999999999997654321 000 112346778999999877664
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+. +++.++|+..++..++|+
T Consensus 130 -----~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~~~~adr 203 (359)
T 2yyz_A 130 -----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI-TSVYVTHDQAEAMTMASR 203 (359)
T ss_dssp -----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHHHHhCCE
Confidence 45579999999999998874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 204 IAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.3e-37 Score=358.97 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=177.5
Q ss_pred ccccccc-ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcC
Q 038815 169 QILPTRK-KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 169 ~~~~~~~-~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
+++.+++ +++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|
T Consensus 18 ~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 18 VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEec
Confidence 3455555 5567999999999999999999999999999999999999997 9999999999865443 467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~ 140 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYAN 140 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT
T ss_pred CcccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhc
Confidence 999999999999999986543211 0 012234678899999987766
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
. .+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|
T Consensus 141 r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 141 R-----FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-TSVFVTHDQEEALEVAD 214 (355)
T ss_dssp S-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCS
T ss_pred C-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHHHHhCC
Confidence 4 45679999999999988874 9999999999999999999999998664454 45558899999999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|+++..|+++++.
T Consensus 215 ri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 215 RVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999998874
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.9e-37 Score=360.05 Aligned_cols=210 Identities=25% Similarity=0.390 Sum_probs=177.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecC
Confidence 34455556678999999999999999999999999999999999999997 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r 129 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNR 129 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTC
T ss_pred cccCCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhC
Confidence 99999999999999986543211 0 0122346788999999876654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|+
T Consensus 130 -----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adr 203 (362)
T 2it1_A 130 -----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-TTVYVTHDQAEALAMADR 203 (362)
T ss_dssp -----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCE
Confidence 45679999999999988874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 204 IAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.4e-37 Score=339.83 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=167.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888877652 3579999999999999999999999999999999999876 35899999998753
Q ss_pred cc------ccc-ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 947 QE------TFT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~~------~~~-~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
.. .++ +.+||++|++.+++.+||+||+.+....+. .+.++..+.++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 579999999999999999999998765432 233445567899999999998877764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.. + +..|+
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~ 208 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHR 208 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998779999999999653 3 66676
No 17
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.7e-37 Score=357.93 Aligned_cols=203 Identities=24% Similarity=0.285 Sum_probs=175.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|+++.+... .+...+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58899999877521 123579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
... ..++.+|||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 431 23567999999999999999999999987654 235666777899999999999888876 4679
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..|++.|+++.++ |.|||+++|+++ .+.+..|+
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDr 233 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 233 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999764 999999999974 56677888
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-36 Score=343.53 Aligned_cols=210 Identities=23% Similarity=0.345 Sum_probs=173.1
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC--CCC---ccceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD--EFE---PQRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~ 242 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. ... .++.++
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEE
Confidence 344555566678999999999999999999999999999999999999987 999999999874 111 135699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhh-hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 243 YISQHDNHIGEMTVRETLAFSA-RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
||+|++.+++.+||+||+.|+. +..+.. + .+....++.+++.+||
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L 149 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGL 149 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCC
Confidence 9999999999999999999864 322110 0 0112335678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+. +++|+.++|+.+++
T Consensus 150 ~~~~~~~-----~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 150 KDKAHAY-----PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFA 222 (263)
T ss_dssp GGGTTSC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH
T ss_pred chHhcCC-----hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHH
Confidence 8776644 457999999999998877 49999999999999999999999998653 45556688999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++||+|++|++|++++.|+++++.
T Consensus 223 ~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998764
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-36 Score=338.33 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=167.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~ 241 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.+
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 34445555577999999999999999999999999999999999999987 9999999998865432 1569
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++.+||+||+.++....+.. + .+....++.+++.+||
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l 130 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGL 130 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999999999999875433210 0 0112235678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|+ +++|||||+|||+.++..+.+.|+++.+. +.| |+.++|+..++
T Consensus 131 ~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~t-vi~vtHd~~~~ 203 (224)
T 2pcj_A 131 GDKLSRK-----PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTS-IVMVTHERELA 203 (224)
T ss_dssp TTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCE-EEEECSCHHHH
T ss_pred chhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCE-EEEEcCCHHHH
Confidence 8776654 457999999999998877 49999999999999999999999998654 444 55567777776
Q ss_pred HhhcCeEEEecCCeEEEecCh
Q 038815 397 YDLFDDIILLSDGLIVYLGPR 417 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~ 417 (1436)
++||+|++|++|++++.|++
T Consensus 204 -~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 204 -ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp -TTSSEEEEEETTEEEEEEEC
T ss_pred -HhCCEEEEEECCEEEEEeee
Confidence 89999999999999999864
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-36 Score=357.04 Aligned_cols=218 Identities=24% Similarity=0.355 Sum_probs=180.3
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d 248 (1436)
++.++++++ +|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+.
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCc
Confidence 344555556 999999999999999999999999999999999999998 9999999998865433 46799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.++|.+||+||+.|+.+.++... . ..++++++.+||++..+.
T Consensus 82 ~l~~~ltv~enl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~- 123 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR- 123 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS-
T ss_pred ccCCCCCHHHHHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC-
Confidence 99999999999999765432110 0 235678999999887664
Q ss_pred ccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|
T Consensus 124 ----~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~~~~~~adri 198 (348)
T 3d31_A 124 ----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRI 198 (348)
T ss_dssp ----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEE
T ss_pred ----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 45579999999999998874 999999999999999999999999866444 45555789999999999999
Q ss_pred EEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~ 442 (1436)
++|++|+++..|+++++. ..|.....++|+-
T Consensus 199 ~vl~~G~i~~~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 199 AVVMDGKLIQVGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EEESSSCEEEEECHHHHH--------SSCCTTHHHHHHC
T ss_pred EEEECCEEEEECCHHHHH--------hCcccHHHHHhcC
Confidence 999999999999998874 2344444566653
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-36 Score=359.68 Aligned_cols=210 Identities=25% Similarity=0.355 Sum_probs=176.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC------CCc-cceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE------FEP-QRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~~~-~~~~ 241 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.. ..+ ++.+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCE
Confidence 34455556678999999999999999999999999999999999999998 9999999988754 322 4679
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+||+|+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L 129 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVP----------R------------------------QEIDQRVREVAELLGL 129 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCC
Confidence 99999999999999999999986544211 0 0122346778999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+. .+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++
T Consensus 130 ~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a 203 (372)
T 1g29_1 130 TELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEA 203 (372)
T ss_dssp GGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHH
T ss_pred chHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHH
Confidence 877664 45679999999999998875 9999999999999999999999998664454 455578999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
..++|+|++|++|+++..|+++++.
T Consensus 204 ~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 204 MTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999998874
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-36 Score=343.65 Aligned_cols=209 Identities=27% Similarity=0.335 Sum_probs=175.5
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYI 244 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv 244 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEE
Confidence 344555666778999999999999999999999999999999999999997 9999999999876543 3568999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++...... .+....++.+++.+||.+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~ 134 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLAL 134 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTT
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhH
Confidence 9999888999999999987532210 0012235678999999887
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
.+.. +..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+. ++++|+.++|+.
T Consensus 135 ~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl 208 (266)
T 4g1u_C 135 AQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDL 208 (266)
T ss_dssp TTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCH
T ss_pred hcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCH
Confidence 6654 457999999999996655 47999999999999999999999998754 556667789999
Q ss_pred hhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 394 PETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 394 ~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++.++||+|++|++|++++.|+++++.
T Consensus 209 ~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 209 NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999998863
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-36 Score=357.85 Aligned_cols=199 Identities=25% Similarity=0.364 Sum_probs=174.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. +..+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 367788877652 4679999999999999999999999999999999999876 3589999999876
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 43 234577999999999999999999999987664 245666778899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDr 203 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999765 999999999974 67888898
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-36 Score=346.71 Aligned_cols=211 Identities=24% Similarity=0.311 Sum_probs=171.9
Q ss_pred cccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 169 QILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 169 ~~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
+++..+++ ...+|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++... ..++.++
T Consensus 11 ~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEE
Confidence 44455553 345999999999999999999999999999999999999997 99999999987421 1245799
Q ss_pred EEcCCC-CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 243 YISQHD-NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 243 yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
||+|++ ..+..+||+||+.|+....+.. + .+....++.+++.+||
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L 133 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLP----------E------------------------DEIRKRVDNALKRTGI 133 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 999986 3455799999999986543211 0 1122346778999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|++ |+|||||+|||+.++.++++.|+++.+..+ ++|+.++|+..++
T Consensus 134 ~~~~~~~-----~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 134 EHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIV 207 (275)
T ss_dssp GGGTTSB-----GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSG
T ss_pred chhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHH
Confidence 8776654 4579999999999988774 999999999999999999999999863334 4555578899999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~~ 422 (1436)
.++||+|++|++|++++.|+++++..
T Consensus 208 ~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 208 PLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp GGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999988753
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-36 Score=359.73 Aligned_cols=210 Identities=25% Similarity=0.373 Sum_probs=171.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecC
Confidence 44556666678999999999999999999999999999999999999998 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+.
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r 137 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNR 137 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTS
T ss_pred cccCCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcC
Confidence 99999999999999976433210 0 0122346788999999877654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|+
T Consensus 138 -----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adr 211 (372)
T 1v43_A 138 -----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV-TTIYVTHDQVEAMTMGDR 211 (372)
T ss_dssp -----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCE
Confidence 45679999999999998874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 212 i~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 212 IAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.3e-36 Score=343.28 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=169.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378899987652 3579999999999999999999999999999999999876 3589999999875
Q ss_pred c--c---ccccceEEEeccCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 K--Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~--~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. . ..+++.+|||+|++.+++.+||+|++.|.. ..+ ..+.++..+.++++++.++|.+..+..+ ..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 1234455667899999999998877763 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 228 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDR 228 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999877999999999964 35556777
No 27
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.5e-36 Score=356.40 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=171.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888877652 4679999999999999999999999999999999999876 3589999999875
Q ss_pred ----cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 946 ----KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ----~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ...++.+|||+|+..++|.+||+||+.|+...+. .+.++.+++++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 2345789999999999999999999999765432 334556678999999999999888774 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||||+.+|++|+|||||||||+.++..+++.|+++. +.|.|||+++|+.. ++..+.|+
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDr 208 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADR 208 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCE
Confidence 999999999999999999999999999999999999999888775 45999999999974 67788898
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-36 Score=345.15 Aligned_cols=209 Identities=26% Similarity=0.317 Sum_probs=172.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC----------CC--
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----------FE-- 236 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------~~-- 236 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++.. ..
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHH
T ss_pred eeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChh
Confidence 44555555678999999999999999999999999999999999999987 9999999998751 11
Q ss_pred ----ccceEEEEcCCCCCCCCCCHHHHHHhhh-hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHH
Q 038815 237 ----PQRVAAYISQHDNHIGEMTVRETLAFSA-RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVL 311 (1436)
Q Consensus 237 ----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (1436)
.++.++||+|++.+++.+||+||+.++. +..+.. + .+....
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~ 132 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARER 132 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHH
Confidence 1356999999999999999999999854 222110 0 011234
Q ss_pred HHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 038815 312 TDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385 (1436)
Q Consensus 312 ~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ 385 (1436)
++.+++.+||++. .+.. +..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+. + ++
T Consensus 133 ~~~~l~~~~L~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g-~t 205 (262)
T 1b0u_A 133 ALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-G-KT 205 (262)
T ss_dssp HHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CC
T ss_pred HHHHHHHcCCCchhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-C-CE
Confidence 5678999999876 6654 4579999999999988774 9999999999999999999999998653 4 45
Q ss_pred EEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 386 VISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 386 ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 206 vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 555789999999999999999999999999998764
No 29
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-36 Score=344.98 Aligned_cols=200 Identities=24% Similarity=0.356 Sum_probs=169.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 478899988763 12459999999999999999999999999999999999876 3589999999876
Q ss_pred c--c---ccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 K--Q---ETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~--~---~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. . ..+++.+|||+|++ ..+..+||+|++.|+...+ ..+.++..++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 2 1 23567899999986 3344789999999986543 2355666778999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++|++.. +.+..|+
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~dr 213 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDN 213 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCE
Confidence 9999999999999999999999999999999999999999999997 569999999999863 4456677
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-36 Score=343.81 Aligned_cols=199 Identities=22% Similarity=0.256 Sum_probs=169.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378888887652 3579999999999999999999999999999999999876 3589999999875
Q ss_pred cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 038815 946 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLPPEVDSETRKMFIEEIMELVELNPL-R 1007 (1436)
Q Consensus 946 ~~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~ 1007 (1436)
.. ..+++.+|||+|+..+++.+||+||+.+.. ..+ ..+.++..+.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 31 123567999999999999999999999864 322 22344556678999999999987 7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1008 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
+..+ ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|+++ ++....|
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7663 579999999999999999999999999999999999999999999999877999999999964 4556678
Q ss_pred h
Q 038815 1088 E 1088 (1436)
Q Consensus 1088 ~ 1088 (1436)
+
T Consensus 222 ~ 222 (262)
T 1b0u_A 222 H 222 (262)
T ss_dssp E
T ss_pred E
Confidence 7
No 31
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.8e-36 Score=337.97 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=164.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc-------ceEEEEcCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-------RVAAYISQHDN 249 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d~ 249 (1436)
.+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 356999999999999999999999999999999999999997 99999999998765432 35999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc-ccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA-DTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~ 328 (1436)
+++.+||+||+.++......+. ..+ .+....+..+++.+||.+.. +
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~-- 140 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGA-------MSG------------------------EERRKRALECLKMAELEERFAN-- 140 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSC-------CCH------------------------HHHHHHHHHHHHHTTCCGGGTT--
T ss_pred cCCCCcHHHHHHHHHHhhhccC-------CCH------------------------HHHHHHHHHHHHHCCCChhhhh--
Confidence 9999999999999765431100 000 11223456789999997642 4
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.+..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+..+.|+ |.++|+.. +.++||+|
T Consensus 141 ---~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 141 ---HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV-VVVTHDIN-VARFGERI 215 (235)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEECSCHH-HHTTSSEE
T ss_pred ---CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEcCCHH-HHHhCCEE
Confidence 44567999999999998877 4999999999999999999999999876445555 44677776 45899999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|+++..|+.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-36 Score=357.71 Aligned_cols=209 Identities=22% Similarity=0.274 Sum_probs=175.3
Q ss_pred ccccccccce--eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC-----CC-ccceE
Q 038815 170 ILPTRKKHLT--ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE-----FE-PQRVA 241 (1436)
Q Consensus 170 ~~~~~~~~~~--iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~-~~~~~ 241 (1436)
++.+++++++ +|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCE
T ss_pred eEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCE
Confidence 4445555566 999999999999999999999999999999999999998 9999999988754 22 24679
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+||+|+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L 130 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDI 130 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999999999999976543211 0 0122346788999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+. .+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+. +++.++|+..++
T Consensus 131 ~~~~~~-----~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~ 204 (353)
T 1oxx_K 131 HHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-TLLVVSHDPADI 204 (353)
T ss_dssp GGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC-EEEEEESCHHHH
T ss_pred chHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence 887664 45579999999999998874 9999999999999999999999998664444 455578999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
..++|+|++|++|+++..|+++++.
T Consensus 205 ~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 205 FAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999998874
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-36 Score=339.60 Aligned_cols=210 Identities=26% Similarity=0.304 Sum_probs=173.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQ 246 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q 246 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++.... .++.++|++|
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcC
Confidence 34555556678999999999999999999999999999999999999987 999999999875421 2356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.+.....+.. + .+....++.+++.+||++..+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~ 141 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIK 141 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGG
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhc
Confidence 999999999999999865433210 0 001223567899999988766
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
.. +..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||
T Consensus 142 ~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 142 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp SB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCS
T ss_pred CC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCC
Confidence 54 457999999999998877 4999999999999999999999999864 3 4555567888899999999
Q ss_pred eEEEecCCeEEEecChHHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~ 422 (1436)
++++|++|++++.|+++++.+
T Consensus 215 ~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 215 RIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999999888754
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-36 Score=338.89 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=169.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478889987652 3579999999999999999999999999999999999865 3589999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 946 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++.+||++|++.+++.+||+||+.+...++. .+.++..+.++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998765432 233444567899999999998887764 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++-...|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~ 215 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 215 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCE
Confidence 99999999999999999999999999999999999999999877999999999964 34444666
No 35
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.8e-36 Score=342.70 Aligned_cols=220 Identities=25% Similarity=0.312 Sum_probs=171.8
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||
T Consensus 11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 44555556678999999999999999999999999999999999999987 9999999998865432 3469999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++......+ .. .......... ...+....++++++.+||++.
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~----~~----~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~ 146 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGES----PL----NSLFYKKWIP-------------KEEEMVEKAFKILEFLKLSHL 146 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSC----HH----HHHHHCSSCC-------------CCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccC----cc----cccccccccC-------------CHHHHHHHHHHHHHHcCCchh
Confidence 99998999999999999864320000 00 0000000000 000112345678999999877
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+.. +..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+. + ++|+.++|+.+++.++
T Consensus 147 ~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g-~tvi~vtHd~~~~~~~ 219 (257)
T 1g6h_A 147 YDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-G-ITFLIIEHRLDIVLNY 219 (257)
T ss_dssp TTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCCSTTGGG
T ss_pred hCCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCHHHHHHh
Confidence 6654 4579999999999988774 9999999999999999999999998653 4 4555578888899999
Q ss_pred cCeEEEecCCeEEEecChHH
Q 038815 400 FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~ 419 (1436)
||+|++|++|++++.|++++
T Consensus 220 ~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 220 IDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CSEEEEEETTEEEEEEESHH
T ss_pred CCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999887
No 36
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-36 Score=336.86 Aligned_cols=208 Identities=23% Similarity=0.301 Sum_probs=169.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEE
Confidence 34455555577999999999999999999999999999999999999987 9999999998865433 2359999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-Ccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-LDI 323 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~ 323 (1436)
+|++.+++.+||+||+.++.... .. . + +....++.+++.++ |++
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~-~~-~--------------------~-------------~~~~~~~~~l~~~~~l~~ 131 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNR-KD-K--------------------E-------------GIKRDLEWIFSLFPRLKE 131 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTC-CC-S--------------------S-------------HHHHHHHHHHHHCHHHHT
T ss_pred ecCCccCCCCcHHHHHHHhhhcC-CC-H--------------------H-------------HHHHHHHHHHHHcccHhh
Confidence 99999999999999999863111 00 0 0 01123456788884 876
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..+. .+..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ .+. +|+.++|+..++.+
T Consensus 132 ~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~-tvi~vtHd~~~~~~ 204 (240)
T 1ji0_A 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGT-TILLVEQNALGALK 204 (240)
T ss_dssp TTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC-CEEEEESCHHHHHH
T ss_pred HhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEecCHHHHHH
Confidence 5554 4557999999999998877 4999999999999999999999999865 344 45557888889999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+||+|++|++|++++.|+++++.
T Consensus 205 ~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 205 VAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HCSEEEEEETTEEEEEEEHHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999988764
No 37
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.9e-36 Score=340.65 Aligned_cols=202 Identities=24% Similarity=0.269 Sum_probs=168.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478889887653 3579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHhhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 946 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWL-RLPP---------EVDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
... ..++.+|||+|+..+++.+||+||+.+.... +... ....++..+.++++++.+||.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 421 2345799999999888999999999986532 1110 0122344567899999999998887764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 222 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999877999999999975 34455666
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5e-36 Score=352.33 Aligned_cols=200 Identities=24% Similarity=0.359 Sum_probs=172.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ +++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 578888887651 12358999999999999999999999999999999999876 3589999999876
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...++.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.++|.++.+..+ ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234678999999999999999999999986654 2345566778999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 215 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADR 215 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999765 999999999964 56777888
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-36 Score=351.79 Aligned_cols=198 Identities=27% Similarity=0.356 Sum_probs=170.2
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67788876652 3579999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223577999999999999999999999975433 2233444567999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adr 203 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASR 203 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998764 999999999964 56778888
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-36 Score=351.36 Aligned_cols=198 Identities=27% Similarity=0.367 Sum_probs=171.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67778876542 3579999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|+...+. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 2235779999999999999999999999865542 345556678999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 203 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADR 203 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 999999999964 57778888
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.5e-35 Score=351.66 Aligned_cols=198 Identities=26% Similarity=0.340 Sum_probs=171.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67788876652 3579999999999999999999999999999999999876 45899999998653
Q ss_pred c-------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 947 Q-------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+. .+.++.+++++++++.++|.+..+..+ ..|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1235779999999999999999999999866542 345556678999999999999888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 209 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999998764 999999999974 57778888
No 42
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.2e-36 Score=334.98 Aligned_cols=198 Identities=24% Similarity=0.314 Sum_probs=165.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 378888887653 3579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 038815 946 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE-LNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lS 1020 (1436)
... . .++.+||++|+..+++.+||+||+.+..... ...++..+.++++++.++ |.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 421 1 2345999999999999999999999864211 122334456788999995 88777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|++. ++.+..|+
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~ 208 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHY 208 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999877999999999964 45566777
No 43
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-36 Score=327.83 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=160.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|+++.+. + .+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578888887642 3 69999999999999999999999999999999999876 3589999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ..++.+||++|+..+++.+||+||+.+....+.. .. + .+.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567899999999999999999999987654321 11 1 3457899999999877 654 4679999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999867899999999986
No 44
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-35 Score=331.70 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=164.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+|+|||+++++ |+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999987 999999999875432 2457999999999999999999
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
|+.|+.+..+. .+ ....++.+++.+||++..+.. +..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRK-----PARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCC-----GGGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCC-----hhhCC
Confidence 99986432110 00 012356789999998766644 45799
Q ss_pred HHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 038815 339 GGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 339 GGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
|||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+.|+ +.++|+.+++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE-EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999998877 4999999999999999999999999865435554 457888899999999999999999999
Q ss_pred ecChHHHH
Q 038815 414 LGPRELVL 421 (1436)
Q Consensus 414 ~G~~~~~~ 421 (1436)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 45
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-35 Score=351.48 Aligned_cols=198 Identities=22% Similarity=0.324 Sum_probs=165.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78888887652 3579999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 223577999999999999999999999875433 234556667899999999999988876 3579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 211 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 211 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999765 999999999964 56778888
No 46
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.2e-36 Score=351.84 Aligned_cols=198 Identities=28% Similarity=0.384 Sum_probs=171.1
Q ss_pred eEEeceeeeeecccchhhcccccCceE--EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
++++|+++.+. ++. +|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67788877653 123 9999999999999999999999999999999999876 358999999987
Q ss_pred ccc------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 945 KKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 945 ~~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
... ...++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234678999999999999999999999976443 2345566678999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adr 210 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999754 999999999974 57778888
No 47
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-35 Score=338.06 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=167.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 578889888653 46799999999999999999999999999999999998653 479999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
.. ...++.+||++|+..+.+.+||+||+.++.... ...+.++.++++++.++|.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234567999999998888899999999875433 11233456889999999998888764 579999
Q ss_pred HHHHHHHHHHHhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+|||+|+. +|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+++ ++.+..|+
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~ 217 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADR 217 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCE
Confidence 9999999999999 99999999999999999999999999999765 579999999964 45567787
No 48
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.9e-35 Score=331.09 Aligned_cols=195 Identities=26% Similarity=0.277 Sum_probs=155.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67788887652 35799999999999999999999999999999999997211256899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 038815 947 QE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLRQSLVGLPGVSG-LS 1020 (1436)
Q Consensus 947 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-lS 1020 (1436)
.. . .++.++|++|++.+++.+||+|++.+.............+..+.++++++.+|| .+..+..+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 21 1 134589999999999999999999886532111112233445678899999999 57777764 45 99
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
|||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++.
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999767999999999975
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-35 Score=334.59 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=163.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.... ...+.+|+|||+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 56788877653100 001579999999999999999999999999999999999875 35899999998764
Q ss_pred cccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 038815 947 QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN--PLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGq 1023 (1436)
...+++.+||++|++ ..++.+||+||+.|...... +.++..++++++++.+||. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 324567799999995 45677999999998643221 1112234678999999998 8777763 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.. +....|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~ 207 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDR 207 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999997779999999999863 3344666
No 50
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.4e-35 Score=345.17 Aligned_cols=194 Identities=21% Similarity=0.268 Sum_probs=166.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+ +++ +|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 4567776654 235 9999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+.. +.. ++++++++.++|.++.+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 23457799999999999999999999998665421 111 56899999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adr 197 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 999999999964 57778888
No 51
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.6e-35 Score=376.44 Aligned_cols=180 Identities=26% Similarity=0.389 Sum_probs=129.6
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHH---------HHHHCCCC-CC---eeE------EEEEEcCeeccccc-----
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIT------GSITISGYLKKQET----- 949 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------~~Lag~~~-~~---~~~------G~i~i~g~~~~~~~----- 949 (1436)
.|+|||+.|++|++++|+||||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 58999999999999999999999999997 44444321 11 222 33555544321100
Q ss_pred ----------------------------c-----------cceEEEeccCCCCCC-------------------------
Q 038815 950 ----------------------------F-----------TRISGYCEQNDIHSP------------------------- 965 (1436)
Q Consensus 950 ----------------------------~-----------~~~~gyv~Q~d~~~~------------------------- 965 (1436)
| .+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0 012467777665554
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 038815 966 -------LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1037 (1436)
Q Consensus 966 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p- 1037 (1436)
.+||.|++.|.... .....+.++|+.+||.... .|.+ +..|||||||||.||+||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888774321 1234567899999996532 2332 4689999999999999999876
Q ss_pred --CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1038 --SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1038 --~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ .....|+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADr 876 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADH 876 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCE
Confidence 699999999999999999999999999988999999999963 2333454
No 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-35 Score=332.58 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD-NHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 256 (1436)
+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.....++.++|++|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 57999999999999999999999999999999999999987 999999998875432346799999995 56778999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--ccccccccCccc
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD--ICADTLVGDEMI 334 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 334 (1436)
+||+.|+.... ... .+ ....++.+++.+||+ +..+.. +
T Consensus 97 ~enl~~~~~~~-~~~--------------------~~--------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD--------------------RD--------------PVPLVKKAMEFVGLDFDSFKDRV-----P 136 (266)
T ss_dssp HHHHHHTTTTT-CTT--------------------SC--------------SHHHHHHHHHHTTCCHHHHTTCC-----G
T ss_pred HHHHHHHHHhc-CCH--------------------HH--------------HHHHHHHHHHHcCcCCcccccCC-----h
Confidence 99999864321 000 00 112356789999998 766644 4
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+. + ++||.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g-~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-G-KTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 57999999999998877 49999999999999999999999998653 4 45555788888888999999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 53
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.3e-35 Score=337.35 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=160.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
..++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+|+
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~- 141 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN- 141 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-
Confidence 467999999999999999999999999999999999999998 9999999999877653 467999999998775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+|||.|+..... .+...++.... .....++. ++...+|.+|. .
T Consensus 142 ~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~------~l~~~i~~--lp~gl~t~~~~-~ 187 (306)
T 3nh6_A 142 DTIADNIRYGRVTAG-------------------------NDEVEAAAQAA------GIHDAIMA--FPEGYRTQVGE-R 187 (306)
T ss_dssp EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHH------TCHHHHHH--STTGGGCEEST-T
T ss_pred ccHHHHHHhhcccCC-------------------------HHHHHHHHHHh------CcHHHHHh--ccchhhhHhcC-C
Confidence 699999998642110 00000000000 00111222 34456788875 4
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||++ |+|||||+|||+.+...|.+.|+++.+ ++|+| .++|....+.. ||+|++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi-~itH~l~~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTI-VVAHRLSTVVN-ADQILVIKD 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEE-EECCSHHHHHT-CSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEE-EEEcChHHHHc-CCEEEEEEC
Confidence 5689999999999998874 999999999999999999999998743 45554 47888877765 999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+++++.+
T Consensus 264 G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 264 GCIVERGRHEALLS 277 (306)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-35 Score=326.64 Aligned_cols=181 Identities=22% Similarity=0.321 Sum_probs=155.3
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+|||+.+++ |++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 358999999987642 2345679999999999999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.|....+ .....++.++++++.+||.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864322 11222567889999999998877764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+++.|++++++ |.|||+++|++. ++.+..|+
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~ 196 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADE 196 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999764 999999999964 45566787
No 55
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6e-35 Score=334.65 Aligned_cols=203 Identities=21% Similarity=0.338 Sum_probs=162.9
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3588999987653 3579999999999999999999999999999999999876 358999999976
Q ss_pred cc--c---ccccceEEEeccCCCC--CCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038815 945 KK--Q---ETFTRISGYCEQNDIH--SPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016 (1436)
Q Consensus 945 ~~--~---~~~~~~~gyv~Q~d~~--~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1016 (1436)
.. . ..+++.+||++|+..+ .+.+||+||+.+....... .....++..+.++++++.+||.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 53 1 2345679999998653 3457999999885321100 00112334567889999999998887764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV--VCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|| |+++|++. ++.+..|+
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~ 232 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSK 232 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCE
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999997779999 99999974 33344555
No 56
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.4e-34 Score=327.04 Aligned_cols=197 Identities=26% Similarity=0.295 Sum_probs=161.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.|++||++||+|||||||||||++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 588999987652 3579999999999999999999999999999999999742235689999999875
Q ss_pred ccc---cc-cceEEEeccCCCCCCCCCHHHHHHHhhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 946 KQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAW-LR---LPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
... .. ++.+||++|++.+++.+||+|++.+... ++ .....+.++..+.++++++.+||. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 12 2348999999999999999999987541 21 111223444456789999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|++.
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 249999999999999999999999999999999999999999999998767999999999975
No 57
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-35 Score=333.67 Aligned_cols=214 Identities=27% Similarity=0.275 Sum_probs=167.9
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC--CCCc---cceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD--EFEP---QRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~~---~~~~~ 242 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. .... ++.++
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEE
Confidence 344555556678999999999999999999999999999999999999997 999999999875 3322 35699
Q ss_pred EEcCCCCCC--CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 243 YISQHDNHI--GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 243 yv~Q~d~~~--~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
|++|++.++ +.+||+||+.++..... + .+. . + . .+....++.+++.+|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~-~-~~~----~----------~--~------------~~~~~~~~~~l~~~g 150 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSI-G-VYQ----D----------I--D------------DEIRNEAHQLLKLVG 150 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTT
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhcc-c-ccc----C----------C--c------------HHHHHHHHHHHHHcC
Confidence 999986533 35799999998632110 0 000 0 0 0 011223567899999
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAV-ISLLQPAP 394 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~i-i~~~q~~~ 394 (1436)
|++..+.. +..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+. +.|+. +.++|+.+
T Consensus 151 l~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 151 MSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp CGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred ChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 98776654 4469999999999988774 9999999999999999999999998664 55551 55788888
Q ss_pred hHHhhcCeEEEecCCeEEEecChHHH
Q 038815 395 ETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 395 ~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
++.++||+|++|++|++++.|+++++
T Consensus 225 ~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 225 EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999998775
No 58
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.6e-34 Score=324.01 Aligned_cols=192 Identities=23% Similarity=0.342 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. +++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 67888887652 02469999999999999999999999999999999999876 3479987
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
.++.+||++|++.+++.+||+||+.+........ .....+..+.++++++.+||.+..+..+ ..|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 2356999999998888999999999864322110 0112333567899999999998877763 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~ 198 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANK 198 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 999999999974 35566777
No 59
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=7.5e-34 Score=364.24 Aligned_cols=179 Identities=26% Similarity=0.333 Sum_probs=133.8
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH-C----C-----CCCC---eeEE------EEEEcCeeccccc-----
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------SITISGYLKKQET----- 949 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 949 (1436)
.|+|||+.|++||++||+|+||||||||++.|. | . ...| .+.| .|.++|.+.....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999853 1 1 1122 2345 5888887642100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 038815 950 -----------------FTRISGYCEQNDIHS----------------------P------------------------- 965 (1436)
Q Consensus 950 -----------------~~~~~gyv~Q~d~~~----------------------~------------------------- 965 (1436)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357777743221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 038815 966 -------LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037 (1436)
Q Consensus 966 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p 1037 (1436)
.+||.|++.|... . . +...+.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3578888876421 1 1 1223568999999986 44544 3579999999999999999865
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1038 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1038 ---~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||+|||||+|||+.+...+++.|+++++.|.|||+++|+... .+..|+
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDr 916 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADY 916 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCE
Confidence 9999999999999999999999999998889999999999643 356676
No 60
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.9e-34 Score=323.87 Aligned_cols=196 Identities=25% Similarity=0.374 Sum_probs=155.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 467999999999999999999999999999999999999987 9999999998865432 357999999998776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc-------c
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA-------D 326 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------~ 326 (1436)
.||+||+.++.. . . .. ..++.+++.+|+.+.. +
T Consensus 97 ~tv~enl~~~~~--~--~--------~~----------------------------~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANP--G--M--------SV----------------------------EKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCT--T--C--------CH----------------------------HHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCC--C--C--------CH----------------------------HHHHHHHHHhChHHHHHhCcchhh
Confidence 699999988521 0 0 00 0122344455554332 3
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+.++ +.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++. .+.|+ |.++|+...+. .||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tv-iivtH~~~~~~-~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTV-IIIAHRLSTVK-NAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEE-EEECSSGGGGT-TSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEE-EEEeCCHHHHH-hCC
Confidence 3333 34678999999999998877 499999999999999999999999873 34555 44677776664 599
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
No 61
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.7e-34 Score=326.66 Aligned_cols=208 Identities=23% Similarity=0.272 Sum_probs=160.4
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEEEcCccCCCCCc----cceEEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK--LDSSLKVSGRVTYNGHNMDEFEP----QRVAAY 243 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~y 243 (1436)
++..+++++++|+|||++|++||+++|+||||||||||||+|+|. ++|+ +|+|.++|.++..... ++.++|
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~ 84 (250)
T 2d2e_A 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFL 84 (250)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred eEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEE
Confidence 344455556799999999999999999999999999999999998 6666 9999999998865433 234889
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC-
Q 038815 244 ISQHDNHIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL- 321 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL- 321 (1436)
++|++.+++.+||+||+.++... .+... .. .+....++.+++.+||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~gl~ 132 (250)
T 2d2e_A 85 AFQYPVEVPGVTIANFLRLALQAKLGREV--------GV------------------------AEFWTKVKKALELLDWD 132 (250)
T ss_dssp CCCCCC-CCSCBHHHHHHHHHHHHHTSCC--------CH------------------------HHHHHHHHHHHHHHTCC
T ss_pred eccCCccccCCCHHHHHHHHHHhhccccC--------CH------------------------HHHHHHHHHHHHHcCCC
Confidence 99999999999999999986421 11000 00 0112235678999999
Q ss_pred cccccccccCcccCC-CCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 322 DICADTLVGDEMIRG-ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rg-LSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
.+..+.. +.. |||||||||+||++++ ++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..+
T Consensus 133 ~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 133 ESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRI 205 (250)
T ss_dssp GGGGGSB-----TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGG
T ss_pred hhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 4655544 445 9999999999988774 999999999999999999999998743 34555567888888
Q ss_pred HHhh-cCeEEEecCCeEEEecChHH
Q 038815 396 TYDL-FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 396 ~~~l-fD~vilL~~G~iv~~G~~~~ 419 (1436)
+..+ +|+|++|++|++++.|+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 206 LNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp GGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHhcCCEEEEEECCEEEEEeCHHH
Confidence 8888 59999999999999999873
No 62
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-34 Score=323.96 Aligned_cols=197 Identities=27% Similarity=0.416 Sum_probs=160.6
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46889999887620 13569999999999999999999999999999999999876 358999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL-------VGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.|.. + ..+ .+.++++++.+++.+..+.. ++..
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999988876 59999998752 1 112 23467788888887765543 2322
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +..|+
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~ 212 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADR 212 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 46899999999999999999999999999999999999999999999985 59999999999863 2 34666
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.7e-34 Score=332.03 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=161.4
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
...+.++|+++.++ +.+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34689999998764 13569999999999999999999999999999999999876 45899999998
Q ss_pred eccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 038815 944 LKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGL 1013 (1436)
Q Consensus 944 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~ 1013 (1436)
+... ..+++.+|||+|++.+++ .||+||+.|+... ... +.++++++.+++.+.. ++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 7653 345678999999998885 5999999886321 122 2356677777775533 455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. ..+|||||||||+|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++. + ...|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~ 257 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQ 257 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCE
Confidence 4 358999999999999999999999999999999999999999999999864 7999999999764 3 34777
No 64
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.5e-34 Score=322.91 Aligned_cols=178 Identities=20% Similarity=0.316 Sum_probs=153.7
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+|+|||+.+++||+++|+|||||||||||++|+|... +. |+|.++|.+... ..+++.+||++|+..+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 7999999999999999999999999999999999876 35 999999987532 23456799999999888899999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC-------cceec
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1043 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~-------il~lD 1043 (1436)
||+.+... +. .+ .+.++++++.+||.+..+.. +..|||||||||+||++|+.+|+ +|+||
T Consensus 92 e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 11 11 34578999999999887765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.++..+++.|++++++|+|||+++|++. .+.+..|+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~ 202 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHR 202 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999777999999999964 34566777
No 65
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-33 Score=319.37 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=162.2
Q ss_pred ccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 170 ILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
++..+++ ++++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++
T Consensus 9 ~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~ 75 (253)
T 2nq2_C 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFF 75 (253)
T ss_dssp EEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCC
T ss_pred eEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCC
Confidence 3444444 567999999999999999999999999999999999999987 999982 34699999999
Q ss_pred CCCCCCCHHHHHHhhhhhc-cCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 249 NHIGEMTVRETLAFSARCQ-GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.+++.+||+||+.++.... +.... + . .+....++.+++.+||++..+.
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~ 124 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKR 124 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcC
Confidence 9999999999999864321 10000 0 0 0012235678999999877665
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. +..|||||||||+||++++ |+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+.+++.++||+
T Consensus 125 ~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~ 198 (253)
T 2nq2_C 125 E-----FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANK 198 (253)
T ss_dssp B-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSE
T ss_pred C-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 4 4579999999999988774 99999999999999999999999986532 44556678899999999999
Q ss_pred EEEecCCeEEEecChHHH
Q 038815 403 IILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~ 420 (1436)
|++|++|+ ++.|+++++
T Consensus 199 v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 199 TLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp EEEEETTE-EEEEEHHHH
T ss_pred EEEEeCCe-EecCCHHHH
Confidence 99999999 999988776
No 66
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.2e-34 Score=325.37 Aligned_cols=203 Identities=21% Similarity=0.359 Sum_probs=158.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|||+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 67999999999999999999999999999999999999987 9999999998755432 356999999998877 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc--CCcccccccccCc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL--GLDICADTLVGDE 332 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 332 (1436)
||+|||.++.... .. ..+.. ++ ......+.+++.+ ||+...+ +
T Consensus 108 tv~enl~~~~~~~--~~----~~~~~------------------~~------~~~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT----MEEIT------------------AV------AMESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC----HHHHH------------------HH------HHHHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch----HHHHH------------------HH------HHHHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999863210 00 00000 00 0011134567777 6654443 4
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+.. +++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45689999999999988774 99999999999999999999999864322 445555778877765 599999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+++++.
T Consensus 231 ~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 231 EGSVCEQGTHLQLM 244 (271)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998875
No 67
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.2e-34 Score=329.00 Aligned_cols=199 Identities=22% Similarity=0.271 Sum_probs=158.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+... +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 48899998876310 11458999999999999999999999999999999999876 3589999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEIMELV--ELNPLRQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++.+++ .||+||+.|..... ...++ ....++++++.+ ||.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11011 122356677777 676665554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++. + +..|+
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~ 225 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHH 225 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSE
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCE
Confidence 357999999999999999999999999999999999999999999999864 48999999999753 2 34676
No 68
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-33 Score=322.12 Aligned_cols=225 Identities=22% Similarity=0.269 Sum_probs=170.6
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEEcCccCCCCCc----cceE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFEP----QRVA 241 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~ 241 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.. +|+ +|+|.++|.++..... ++.+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCE
Confidence 344555555678999999999999999999999999999999999984 455 9999999998765432 2348
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++.+||.|++.+...... ... +. +..+ ..+....++++++.+||
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~-------------~~~--~~-~~~~-----------~~~~~~~~~~~l~~~gl 152 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVR-------------SYR--GQ-ETLD-----------RFDFQDLMEEKIALLKM 152 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHH-------------HGG--GC-CCCC-----------HHHHHHHHHHHHHHTTC
T ss_pred EEEccCccccccccHHHHHHHHHHhhh-------------hhh--cc-ccCC-----------HHHHHHHHHHHHHHcCC
Confidence 999999999999999999987532100 000 00 0000 00112346678999999
Q ss_pred c-ccccccccCcccC-CCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 038815 322 D-ICADTLVGDEMIR-GISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP 394 (1436)
Q Consensus 322 ~-~~~~t~vg~~~~r-gLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 394 (1436)
+ +..+. .+. .|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..
T Consensus 153 ~~~~~~~-----~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~ 225 (267)
T 2zu0_C 153 PEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQR 225 (267)
T ss_dssp CTTTTTS-----BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGG
T ss_pred ChhHhcC-----CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHH
Confidence 6 34443 343 49999999999988774 999999999999999999999998643 2455666788888
Q ss_pred hHHhh-cCeEEEecCCeEEEecChHHHHHHHHhcCCC
Q 038815 395 ETYDL-FDDIILLSDGLIVYLGPRELVLDFFESMGFK 430 (1436)
Q Consensus 395 ~~~~l-fD~vilL~~G~iv~~G~~~~~~~~F~~lGf~ 430 (1436)
++..+ +|+|++|++|++++.|+++++.. .+..||.
T Consensus 226 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 226 ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 87776 89999999999999999987653 4445443
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.6e-33 Score=362.13 Aligned_cols=90 Identities=24% Similarity=0.332 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhhC---CCcceecCCCCCCCHHHHHHHHHHHHHHHHc
Q 038815 992 MFIEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067 (1436)
Q Consensus 992 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~---p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~ 1067 (1436)
+.+.++++.+||... .+.. +..|||||||||.||++|+.+ |+||+|||||+|||..+...|++.|+++++.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 467899999999874 3443 467999999999999999996 6999999999999999999999999999988
Q ss_pred CCEEEEEecCCCHHHHHHhhh
Q 038815 1068 GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1068 g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|.|||+++|++. .+ +..|+
T Consensus 783 G~tVIvisHdl~-~i-~~aDr 801 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDW 801 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSE
T ss_pred CCEEEEEcCCHH-HH-HhCCE
Confidence 999999999964 23 56666
No 70
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-34 Score=322.45 Aligned_cols=198 Identities=23% Similarity=0.317 Sum_probs=159.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIG 252 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 252 (1436)
.++++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 3467999999999999999999999999999999999999987 999999999876533 2457999999998777
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc-----
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT----- 327 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t----- 327 (1436)
.||+||+.|+.... . + ...++.+++.+|+.+..+.
T Consensus 90 -~tv~enl~~~~~~~---~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 90 -GTIRENLTYGLEGD---Y---------------------T---------------DEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp -EEHHHHTTSCTTSC---S---------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred -ccHHHHHhhhccCC---C---------------------C---------------HHHHHHHHHHhChHHHHHhCccch
Confidence 59999998852100 0 0 0113456777788765443
Q ss_pred --cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 328 --LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 328 --~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
.++ +.+..|||||||||+||++++ ++|||||+|||+.++..+.+.|+++. .+.|+ +.++|+...+ ..+
T Consensus 130 ~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tv-i~vtH~~~~~-~~~ 204 (243)
T 1mv5_A 130 NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTT-LVIAHRLSTI-VDA 204 (243)
T ss_dssp GCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEE-EEECCSHHHH-HHC
T ss_pred hchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEE-EEEeCChHHH-HhC
Confidence 233 346789999999999988774 99999999999999999999999875 34455 4467777666 469
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+|++|++|++++.|+++++.
T Consensus 205 d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 205 DKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp SEEEEEETTEECCCSCHHHHH
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988765
No 71
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-33 Score=318.85 Aligned_cols=189 Identities=22% Similarity=0.193 Sum_probs=158.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEE-EEcCCCCCCCCCCH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA-YISQHDNHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 256 (1436)
+++|+|+|++++ |++++|+||||||||||||+|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 679999999999 9999999999999999999999999 97 999999998864322245799 99999876 8999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccccCcccC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~r 335 (1436)
+||+.++..... . ....++.+++.+||+ +..+.. +.
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRK-----LY 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSB-----GG
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCC-----hh
Confidence 999998643210 0 011246688999998 766544 45
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC-eEEEecCC
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD-DIILLSDG 409 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD-~vilL~~G 409 (1436)
.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 7999999999998877 499999999999999999999998742 2 55557888888899999 99999999
Q ss_pred eEEEecChHHHH
Q 038815 410 LIVYLGPRELVL 421 (1436)
Q Consensus 410 ~iv~~G~~~~~~ 421 (1436)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 72
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4e-33 Score=314.33 Aligned_cols=192 Identities=26% Similarity=0.322 Sum_probs=161.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 255 (1436)
++|+|+|++|++||+++|+||||||||||||+|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 589999999999999999999999999999999999987 3 999999998754432 356999999998899999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+||+.++.. ... . ...++.+++.+||++..+.. +.
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~-----~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRS-----TN 125 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSB-----GG
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCC-----hh
Confidence 9999988521 000 0 11246688999998776644 45
Q ss_pred CCCHHHHHHHhhh-----hhh-------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 336 GISGGQKRRVTTG-----PAL-------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 336 gLSGGqrkRvsia-----~a~-------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.|||||||||+|| .|. +|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++.+++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 7999999999995 467 89999999999999999999999998653 445556789999999999999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-34 Score=321.04 Aligned_cols=196 Identities=27% Similarity=0.390 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56778877652 12458999999999999999999999999999999999865 34799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV-------GLPGV 1016 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-------g~~~~ 1016 (1436)
. ..+++.+|||+|++.+++ .||+||+.|... + ... .+.++++++.+++.+..+... +.. +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 2 335677999999998877 599999987521 1 112 234678899999988765542 222 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ +..|+.
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v 207 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKI 207 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEE
Confidence 6899999999999999999999999999999999999999999999987 5999999999975 23 457873
No 74
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.1e-32 Score=352.38 Aligned_cols=179 Identities=25% Similarity=0.336 Sum_probs=130.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH-C----CC-----CCC---eeEE------EEEEcCeecccc------
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGG---YITG------SITISGYLKKQE------ 948 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 948 (1436)
.|+|||+.|++|+++||+|+||||||||+++|. | .. ..| .+.| .|.+++.+....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 589999999999999999999999999999853 2 11 122 1223 366666554210
Q ss_pred ----------------cccceEEEeccCCCCC----------------------C-------------------------
Q 038815 949 ----------------TFTRISGYCEQNDIHS----------------------P------------------------- 965 (1436)
Q Consensus 949 ----------------~~~~~~gyv~Q~d~~~----------------------~------------------------- 965 (1436)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0013356776643221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 038815 966 -------LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037 (1436)
Q Consensus 966 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p 1037 (1436)
.+||.|++.|.+.+ . +...+.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~-------~--~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI-------A--GVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC-------H--HHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhcc-------h--HHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 35777877764321 1 1223568899999976 34443 4579999999999999999875
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1038 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1038 ---~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||+|||||+|||..+...+++.|+++++.|.|||+++|++.. .+..|+
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDr 934 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDW 934 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCE
Confidence 9999999999999999999999999998889999999999653 355666
No 75
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.6e-33 Score=315.71 Aligned_cols=194 Identities=24% Similarity=0.337 Sum_probs=153.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|||++|++|++++|+||||||||||||+|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998754432 357999999998876 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.|+.. . . .+. .+...++.+| +++..+|
T Consensus 108 tv~enl~~~~~-~---~--------~~~----------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D---A--------TDE----------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T---C--------CHH----------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C---C--------CHH----------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0 0 000 0112233333 4445566
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++ +.+..|||||||||+||++++ ++|||||+|||+.++..+.+.|+++. .+.| |+.++|+...+ ..+|+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~t-viivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRT-LIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCE-EEEEcCCHHHH-HhCCE
Confidence 665 346789999999999988774 99999999999999999999999874 2444 45567776665 46999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.7e-33 Score=317.17 Aligned_cols=196 Identities=25% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+... ..+.+|+|||+.|++||++||+|||||||||||++|+|... + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47889998876310 11358999999999999999999999999999999999865 3 79999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.+.++++.+++.+. .++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 1121 235667777776543 33334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +..|+
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~ 222 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAES 222 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCE
Confidence 468999999999999999999999999999999999999999999999865 8999999999863 2 34666
No 77
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=337.19 Aligned_cols=203 Identities=23% Similarity=0.233 Sum_probs=160.7
Q ss_pred ccccccc--ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEE
Q 038815 169 QILPTRK--KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAY 243 (1436)
Q Consensus 169 ~~~~~~~--~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~y 243 (1436)
+++.+++ ....+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++|
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEE
Confidence 3445555 45679999999999999999999999999999999999986 5 8999999999876654 367999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|+|++.+|+ +||+||+.+.... . ...++.+++.+||.+
T Consensus 99 v~Q~~~lf~-~tv~enl~~~~~~-------------~----------------------------~~~v~~~l~~~~L~~ 136 (390)
T 3gd7_A 99 IPQKVFIFS-GTFRKNLDPNAAH-------------S----------------------------DQEIWKVADEVGLRS 136 (390)
T ss_dssp ESCCCCCCS-EEHHHHHCTTCCS-------------C----------------------------HHHHHHHHHHTTCHH
T ss_pred EcCCcccCc-cCHHHHhhhcccc-------------C----------------------------HHHHHHHHHHhCCHH
Confidence 999998887 6999999742100 0 012345677888876
Q ss_pred cccccccC------cccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 038815 324 CADTLVGD------EMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP 392 (1436)
Q Consensus 324 ~~~t~vg~------~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 392 (1436)
..+..... +....|||||||||+||||++ |||||||+|||+.++.++.+.|++.. .+ ++++.++|+
T Consensus 137 ~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd 213 (390)
T 3gd7_A 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEAR 213 (390)
T ss_dssp HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSS
T ss_pred HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcC
Confidence 54433221 223349999999999998875 99999999999999999999998742 24 455556777
Q ss_pred hhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 393 APETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 393 ~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
. +....+|+|++|++|+++..|+++++.
T Consensus 214 ~-e~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 214 I-EAMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp S-GGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred H-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5 556779999999999999999999874
No 78
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-32 Score=312.82 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=156.3
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+... ...+.+|+|+|+.++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 4677887765310 011569999999999 9999999999999999999999986 4 4899999998754
Q ss_pred cccccceEE-EeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 038815 947 QETFTRISG-YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~~~~~~~~g-yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqr 1024 (1436)
....++.+| |++|++.+ .+||+||+.+...++ ... .+.++++++.++|. +..+..+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211256799 99999877 799999999876443 111 34578999999998 8777663 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh-h
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD-E 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD-~ 1088 (1436)
|||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ |||+++|++. ++.+..| +
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~ 195 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYK 195 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCce
Confidence 999999999999999999999999999999999999998743 9999999974 3445667 6
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-33 Score=308.29 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=153.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
+++..++++ ++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. ..++.++|++|++
T Consensus 14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSC
T ss_pred EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCC
Confidence 344555555 8999999999999999999999999999999999999987 999999998875 2456799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.++....+. . .+ ...++.+++.+||++. +
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~-~--------------------~~---------------~~~~~~~l~~~gl~~~-~-- 128 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGV-K--------------------VN---------------KNEIMDALESVEVLDL-K-- 128 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTC-C--------------------CC---------------HHHHHHHHHHTTCCCT-T--
T ss_pred cCCCCCCHHHHHHHHHHhcCC-c--------------------hH---------------HHHHHHHHHHcCCCcC-C--
Confidence 999999999999986543211 0 00 1124567899999765 4
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+. +.|+ +.++|+..++..++|+|
T Consensus 129 ---~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~ti-iivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 129 ---KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIV-IISSREELSYCDVNENL 203 (214)
T ss_dssp ---SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEE-EEEESSCCTTSSEEEEG
T ss_pred ---CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEE-EEEeCCHHHHHHhCCEE
Confidence 44567999999999998877 49999999999999999999999998653 4454 45677788888888887
Q ss_pred EEecCCeE
Q 038815 404 ILLSDGLI 411 (1436)
Q Consensus 404 ilL~~G~i 411 (1436)
+++ .|+|
T Consensus 204 ~~~-~~~~ 210 (214)
T 1sgw_A 204 HKY-STKI 210 (214)
T ss_dssp GGG-BC--
T ss_pred EEe-CCcc
Confidence 644 4444
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.98 E-value=3.4e-32 Score=303.75 Aligned_cols=192 Identities=23% Similarity=0.330 Sum_probs=144.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 467999999999999999999999999999999999999987 99999998 28999999988875 99
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.|+.... +. +.+ ...+.. ..+..++.+ +...+|.++ +.+..
T Consensus 86 ~enl~~~~~~~----------~~-~~~------------~~~~~~---------~l~~~~~~~--~~~~~~~~~-~~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD----------EY-RYR------------SVIKAC---------QLEEDISKF--AEKDNIVLG-EGGIT 130 (229)
T ss_dssp HHHHHTTSCCC----------HH-HHH------------HHHHHT---------TCHHHHTTS--TTGGGSCBC-TTCTT
T ss_pred HHHhhccCCcC----------hH-HHH------------HHHHHh---------CcHHHHHhC--ccccccccc-CCCCc
Confidence 99999853110 00 000 000000 001112222 222344454 34678
Q ss_pred CCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSI-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 337 LSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
|||||||||+||++++ ++|||||+|||+.++..+.+.+ ++.. .+. +|+.++|+..++. .+|+|++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~-tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCC-EEEEEcCChHHHH-hCCEEEEEECCE
Confidence 9999999999988774 9999999999999999999874 4432 244 4555677776664 599999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998764
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.98 E-value=1.3e-32 Score=308.60 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=145.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
++++|+|||++|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ++||+|++. ++.+||
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~----------i~~v~Q~~~-~~~~tv 82 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKGS----------VAYVPQQAW-IQNDSL 82 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECSC----------EEEECSSCC-CCSEEH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCE----------EEEEcCCCc-CCCcCH
Confidence 457999999999999999999999999999999999999987 999999982 899999975 568999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccccCcccC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~r 335 (1436)
+||+.++.... . + . .+...+ ...+++.+++. ...+|.++ +.+.
T Consensus 83 ~enl~~~~~~~---~------~--~------------~~~~~~------------~~~l~~~~~~~~~~~~~~~~-~~~~ 126 (237)
T 2cbz_A 83 RENILFGCQLE---E------P--Y------------YRSVIQ------------ACALLPDLEILPSGDRTEIG-EKGV 126 (237)
T ss_dssp HHHHHTTSCCC---T------T--H------------HHHHHH------------HTTCHHHHTTSTTGGGSEES-TTSB
T ss_pred HHHhhCccccC---H------H--H------------HHHHHH------------HHhhHHHHHhcccccccccc-CCCC
Confidence 99999853210 0 0 0 000000 00012233332 12334443 4577
Q ss_pred CCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||++++ ++|||||+|||+.++..+++.+++......+++|+.++|+...+ ..||+|++|++|+
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~ 205 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGK 205 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCE
Confidence 89999999999988774 99999999999999999999985211111234455567776665 5799999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+++.|+++++.
T Consensus 206 i~~~g~~~~~~ 216 (237)
T 2cbz_A 206 ISEMGSYQELL 216 (237)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHh
Confidence 99999998764
No 82
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=5.7e-32 Score=301.91 Aligned_cols=185 Identities=21% Similarity=0.294 Sum_probs=145.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++. +++.+|+|||+++++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788888876531 12468999999999999999999999999999999999876 3589999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCC
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~ 1018 (1436)
.+||++|++.+++. ||+||+.|... .... .++++++.+++.+.. ++.++.. ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999988875 99999987521 1111 133455555554332 2233332 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++. ++++. .|+|||+++|++.. + +..|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~ 198 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK 198 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCE
Confidence 999999999999999999999999999999999999999997 45554 48999999999743 3 45777
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.7e-32 Score=326.71 Aligned_cols=196 Identities=22% Similarity=0.289 Sum_probs=161.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.+.. +++.+|+|||+.|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999887631 23569999999999999999999999999999999999864 57999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL------PG 1015 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~ 1015 (1436)
... ..+++.+|||+|+..+++ .||+||+.+.. ... ++.++++++.++|.+..+..... +.
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 643 234678999999999887 69999996421 111 24578899999998877665321 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++. .|.|||+++|+.. .....|+
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDr 222 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQ 222 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCE
Confidence 23499999999999999999999999999999999999999999999864 4899999999974 3455787
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=8.6e-32 Score=301.93 Aligned_cols=184 Identities=22% Similarity=0.376 Sum_probs=143.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.. +++.+|+|||+.|++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678888876531 12468999999999999999999999999999999999875 5689999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC------cc-cccccCCCCCCCC
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN------PL-RQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~------~~-~~~~vg~~~~~~l 1019 (1436)
.+|||+|++.+ +.+||+||+.+.... ..+ + .+++++.+++. +. .++.++.. +..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999875321 111 1 22333444332 21 12223332 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK---NTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + +.+|+
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~ 197 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDV 197 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999995 343 48999999999874 3 45777
No 85
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1e-31 Score=339.73 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=159.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
..++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 430 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS- 430 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-
Confidence 457999999999999999999999999999999999999998 9999999999876654 467999999998886
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+||+.++.... +.+...++....+ .+..+ -.+++..||.+|+ .
T Consensus 431 ~tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 431 GTIKENLKWGREDA-------------------------TDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVER-G 476 (587)
T ss_dssp EEHHHHHTTTCSSC-------------------------CHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECS-S
T ss_pred ccHHHHHhccCCCC-------------------------CHHHHHHHHHHhC------cHHHH--HhcccchhhHhcC-C
Confidence 49999998853110 0000111100000 01112 2356677888875 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||++||+.+..++.+.++++. .++|+| .++|..+.+ ..+|+|++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi-~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTF-IITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEE-EEESCHHHH-TTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEE-EEecChHHH-HhCCEEEEEEC
Confidence 668999999999999877 499999999999999999999999863 345554 467776665 58999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 86
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=1.4e-31 Score=338.89 Aligned_cols=197 Identities=24% Similarity=0.393 Sum_probs=158.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 57999999999999999999999999999999999999997 9999999999876543 457999999998887 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.++.. . .. +.+. ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~---------------------~~~~---------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EY---------------------SREQ---------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CC---------------------CHHH---------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CC---------------------CHHH---------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00 0000 112222223 3445678
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+|+ ....|||||||||+||||+ +++|||||+|||+.++.++.+.++++.+ ++|+|+ ++|....+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-EeccHHHH-HhCCE
Confidence 8885 4668999999999998877 4999999999999999999999998743 555555 66666555 57999
Q ss_pred EEEecCCeEEEecChHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~ 422 (1436)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998754
No 87
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=1.7e-31 Score=337.61 Aligned_cols=204 Identities=24% Similarity=0.374 Sum_probs=159.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 357999999999999999999999999999999999999998 9999999999876543 4679999999988865
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
||+||+.++.... +.+...++....+ .+.. .-.+++..||.+|+ .
T Consensus 430 -tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 430 -TVKENILLGRPTA-------------------------TDEEVVEAAKMAN------AHDF--IMNLPQGYDTEVGE-R 474 (578)
T ss_dssp -BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSTTGGGCBCCG-G
T ss_pred -cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------cHHH--HHhCcchhhhhhcc-C
Confidence 9999999853100 0001111110000 0111 12356677899985 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||+|||+.+...+.+.++++. .++|+++ ++|..+.+ +.+|+|++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEEC
Confidence 568999999999998877 499999999999999999999998863 3455554 67777665 56999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=1.6e-31 Score=338.41 Aligned_cols=196 Identities=24% Similarity=0.384 Sum_probs=157.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 57999999999999999999999999999999999999998 9999999998865433 467999999998887 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.++.. . . .++ + .+++.++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~--------~~~-------------~---------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--E--------YTR-------------E---------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--C--------CCH-------------H---------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998531 0 0 000 0 0122233333 3445678
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+|+. ...|||||||||+||||+ +++|||||+|||+.++.++.+.++++. .++|+|+ ++|....+ +.||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 88854 568999999999998877 499999999999999999999999864 2555555 56666555 57999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
No 89
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=1.9e-31 Score=338.58 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=158.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999998 9999999999876543 357999999998886 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.++..... + .+. ..++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~---------~-------------~~~---------------~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS---------S-------------VTA---------------EEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT---------T-------------SCH---------------HHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc---------c-------------cCH---------------HHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998632100 0 000 01223344444 4556788
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+|+. ...|||||||||+||||+ +++|||||+|||+.++..+.+.++++.+ ++|+|+ ++|....+ +.+|+
T Consensus 476 ~~~~~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEK-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLV-IAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSS-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECCCHHHH-HHSSE
T ss_pred cccCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHH-HcCCE
Confidence 88864 568999999999998877 4999999999999999999999998753 455554 66776665 56999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 90
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=3.1e-31 Score=336.57 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=164.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++.. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+..
T Consensus 342 i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 8999999877421 12469999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCC
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPGV 1016 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~~ 1016 (1436)
. ..+++.+|||+|++.+++ .||+||+.++...+ ...+ ++.++++++.+++.+. .|+.+|.. .
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~ 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-G 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-S
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-C
Confidence 3 345678999999998887 59999998853210 0112 2346788888887654 46666655 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+..|+
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~ 550 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST--IKNANM 550 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH--HHHSSE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH--HHcCCE
Confidence 68999999999999999999999999999999999999999999999876 8999999999853 356888
No 91
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=2.4e-31 Score=336.78 Aligned_cols=198 Identities=25% Similarity=0.313 Sum_probs=162.8
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 35899999887641 11458999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 345678999999998887 499999988531 1 122 23467888888886543 4556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. + +..|+
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~ 547 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADE 547 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSE
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCE
Confidence 468999999999999999999999999999999999999999999999865 9999999999863 2 45666
No 92
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=3.4e-31 Score=335.97 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=159.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999998 9999999999876544 467999999998775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+||+.++.... .. .+ ..++....+ .+..++ .+++..||.+|+ .
T Consensus 443 ~tv~eni~~~~~~~---~~----~~------------------~~~~~~~~~------~~~~~~--~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 443 TTVKENLKYGNPGA---TD----EE------------------IKEAAKLTH------SDHFIK--HLPEGYETVLTD-N 488 (598)
T ss_dssp SBHHHHHHSSSTTC---CT----TH------------------HHHHTTTTT------CHHHHH--TSTTGGGCBCHH-H
T ss_pred ccHHHHHhcCCCCC---CH----HH------------------HHHHHHHhC------CHHHHH--hccccccchhcC-C
Confidence 59999999852100 00 00 011100000 011122 355667888885 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||++||+.+..++.+.++++. .++|+|+ ++|....+. .+|+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~~-~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTIK-NADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHHH-HCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHHH-cCCEEEEEEC
Confidence 568999999999999877 499999999999999999999999874 3555555 667666654 5999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=2.2e-31 Score=337.17 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=163.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 36899999987641 12469999999999999999999999999999999999866 357999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999988531 1 122 23467888888887654 4455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+..|+
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~ 547 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADE 547 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence 368999999999999999999999999999999999999999999999865 9999999999863 356787
No 94
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=2.7e-31 Score=335.85 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=160.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46899999987642 13468999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++. ||+||+.++. + ..+. +.+.++++..++.+. .|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 653 3456789999999988875 9999998752 1 1222 235566666666443 35556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. + +..|+
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~ 544 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADK 544 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSE
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCE
Confidence 35899999999999999999999999999999999999999999999885 48999999999874 2 34666
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.4e-31 Score=338.38 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=159.4
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +.+.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 46899999987742 23468999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++. ||+||+.++. + ..+.+ .+.+.++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----E-DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----S-SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----C-CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 653 3456789999999988864 9999997752 1 12222 2344555555543 345566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|+|+++|+++. ....|+
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~ 546 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADK 546 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSE
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCE
Confidence 35899999999999999999999999999999999999999999999974 58999999999864 346777
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.6e-31 Score=334.77 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=159.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4689999998764 12458999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++. + ..+.+ .++++++..++.+.. |+.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 653 345678999999998886 59999998752 1 11221 245556656554433 3444432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..+||||||||++|||||+.+|+||+|||||||||+.++..+++.|+++. +|+|+|+++|+++. + +..|+.
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i 559 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLI 559 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEE
Confidence 25799999999999999999999999999999999999999999999985 59999999999985 3 458883
No 97
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=2.7e-30 Score=297.24 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=140.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 46999999999999999999999999999999999999987 99999998 28999999988774 999
Q ss_pred HHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 258 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
||+. +... . +. +. +...+.. ..+..++.+ ....++.++ +.+..|
T Consensus 117 enl~-~~~~-------~---~~-~~------------~~~~~~~---------~l~~~l~~~--~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY-------D---EY-RY------------RSVIKAC---------QLEEDISKF--AEKDNIVLG-EGGITL 160 (290)
T ss_dssp HHHH-TTCC-------C---HH-HH------------HHHHHHT---------TCHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc-------c---hH-HH------------HHHHHHh---------ChHHHHHhc--cccccchhc-CccCcC
Confidence 9997 3210 0 00 00 0000000 001122222 222344454 346689
Q ss_pred CHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 338 SGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSI-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 338 SGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
||||||||+||++++ ++|||||+|||+.++..+.+.+ +++. .+. +|+.++|+...+ ..||+|++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~-tviivtHd~~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCC-EEEEEecCHHHH-HcCCEEEEEECCeE
Confidence 999999999988774 9999999999999999999864 4432 244 555577777666 46999999999999
Q ss_pred EEecChHHHH
Q 038815 412 VYLGPRELVL 421 (1436)
Q Consensus 412 v~~G~~~~~~ 421 (1436)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 98
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=3.7e-30 Score=351.64 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=163.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|||++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||.|+.+... |+.++||||++.+|.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-
Confidence 346999999999999999999999999999999999999998 9999999999988765 578999999998776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||||||.|+.... +.+.++..++....+ .+.. .-.|++..||.||+.
T Consensus 1167 gTIreNI~~gld~~-----------------------~~sd~ei~~Al~~a~------l~~~--I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPS-----------------------SVTMAQVEEAARLAN------IHNF--IAELPEGFETRVGDR- 1214 (1321)
T ss_dssp EEHHHHHSSSSCTT-----------------------TSCHHHHHHHHHHTT------CHHH--HHTSTTTTCSEETTT-
T ss_pred ccHHHHHhccCCCC-----------------------CCCHHHHHHHHHHhC------ChHH--HHcCcCCCCCEecCC-
Confidence 49999998864210 011112222211110 0111 124778889999975
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...||||||||++||||++ |+||||||+||+.|...|.+.|++.. .++|+|+ +.|-. .+...||+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAHRL-sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAHRL-NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECSSS-STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-eccCH-HHHHhCCEEEEEEC
Confidence 4579999999999999874 99999999999999999999998742 3455554 66644 45667999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=6.7e-30 Score=293.96 Aligned_cols=181 Identities=22% Similarity=0.322 Sum_probs=134.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++. .+.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 4677777653 1358999999999999999999999999999999999875 5689999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCC
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ-------SLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~~ 1018 (1436)
.+||++|+..+++. ||+||+. .. + ... ..++++++.+++.+..+ +.++.. +..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 38999999988875 9999997 31 1 111 12344556666644322 223322 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.+ +++. .|+|||+++|++.. + +..|+.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i 228 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKI 228 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEE
Confidence 9999999999999999999999999999999999999999974 4554 48999999999742 3 457873
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=1.1e-28 Score=336.23 Aligned_cols=205 Identities=21% Similarity=0.345 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
.++|+|||++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 46999999999999999999999999999999999999998 9999999999876654 46799999999766 57
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
||+|||.++...... +.+...++... ...+.. .-.+++..||.||+. .
T Consensus 1122 ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~------~~~~~~--i~~l~~gldt~vge~-G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV-----------------------SYEEIVRAAKE------ANIHQF--IDSLPDKYNTRVGDK-G 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC-----------------------CHHHHHHHHHH------HTCHHH--HSSTTTGGGCBCSTT-S
T ss_pred cHHHHHhccCCCCCC-----------------------CHHHHHHHHHH------hCcHHH--HHhCccccccccCCC-C
Confidence 999999885321100 00011111000 001111 124677889999964 5
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
..|||||||||+|||++ +|+|||||+|||+.+...+.+.|++.. .+ .+++.++|..+.+ ..||+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~-~tvi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EG-RTCIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SS-SCEEEECSCTTGG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CC-CEEEEEecCHHHH-HcCCEEEEEECC
Confidence 68999999999999877 599999999999999999999998742 34 4455577887776 559999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
+++++|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=1.9e-27 Score=299.51 Aligned_cols=186 Identities=26% Similarity=0.293 Sum_probs=153.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++ +.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 588888899999999999999999999999999999987 8999762 358999999877788999998
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRN-----VEDLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCC-----hhhCCH
Confidence 86521000 00 012346678999998766654 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||+.++.++.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999998877 4999999999999999999999999865444 4555688999999999999999986 8889
Q ss_pred EecChHHHHH
Q 038815 413 YLGPRELVLD 422 (1436)
Q Consensus 413 ~~G~~~~~~~ 422 (1436)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=2.4e-27 Score=295.85 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=152.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 578888889999999999999999999999999999987 899975 1358999999877788999998
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRE-----VNELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCC-----hhhCCH
Confidence 86421000 00 011245678889997666544 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||..++.++.+.|+++++..+. +|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~-tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK-TALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999998876 59999999999999999999999998654444 455588999999999999999986 8899
Q ss_pred EecChHHHHH
Q 038815 413 YLGPRELVLD 422 (1436)
Q Consensus 413 ~~G~~~~~~~ 422 (1436)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1e-26 Score=289.27 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=150.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 567778889999999999999999999999999999997 999997764 47999998776778999999
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+.+..... . .. ....++.+++.+||.+..+.. +..|||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESN-----VNDLSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSB-----GGGCCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCC-----hhhCCH
Confidence 98631100 0 00 001245678888998766644 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999998877 499999999999999999999999987643 45556689999999999999999986 6666
Q ss_pred EecChHHHH
Q 038815 413 YLGPRELVL 421 (1436)
Q Consensus 413 ~~G~~~~~~ 421 (1436)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777665543
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-26 Score=287.65 Aligned_cols=188 Identities=24% Similarity=0.233 Sum_probs=151.7
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCC
Q 038815 178 LTILKDVSGIIRPG-----SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIG 252 (1436)
Q Consensus 178 ~~iL~~vs~~i~~G-----e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 252 (1436)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35799999999999 789999999999999999999999987 7752 1 1345899999876666
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
..||+|++.... ++. . . .....+.+++.+||.+.++.
T Consensus 427 ~~tv~e~~~~~~--~~~---~------------------~---------------~~~~~~~~l~~l~l~~~~~~----- 463 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQ---F------------------L---------------NPQFQTDVVKPLRIDDIIDQ----- 463 (608)
T ss_dssp CSBHHHHHHHHC--SST---T------------------T---------------SHHHHHHTHHHHTSTTTSSS-----
T ss_pred CccHHHHHHHHh--hcc---c------------------c---------------cHHHHHHHHHHcCChhhhcC-----
Confidence 789999875321 100 0 0 00123567889999876664
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++.+..+. +|+.++|+.+++..++|+|++|+
T Consensus 464 ~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~-tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK-TAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEECE
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEe
Confidence 4557999999999998876 59999999999999999999999998654444 45558999999999999999999
Q ss_pred C--CeEEEecChHHHHH
Q 038815 408 D--GLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~--G~iv~~G~~~~~~~ 422 (1436)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988764
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.93 E-value=1.2e-27 Score=299.61 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=102.7
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhh
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 978 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~ 978 (1436)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 559999999999999999999999999985321 111 12455566531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH-----H
Q 038815 979 LRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1053 (1436)
Q Consensus 979 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~-----~ 1053 (1436)
+.. .+ +++ +...|+..+.+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 122 2245665555443 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1054 AAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
...+.++++.+++.|.|||+|+|++
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcc
Confidence 9999999999988899999999997
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=4.6e-26 Score=293.21 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=119.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHH---------------------HHHHCCCCC--Cee---EEEEEEcCeec
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGSITISGYLK 945 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------------------~~Lag~~~~--~~~---~G~i~i~g~~~ 945 (1436)
..+|+|||++|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999997 666664332 112 45677777543
Q ss_pred ccccccceEEEeccCCCC-------------------CCCCCHHHHHHHhhhhcCCCCCCHHHHHH------HHHHHHHH
Q 038815 946 KQETFTRISGYCEQNDIH-------------------SPLVTVYESLLYSAWLRLPPEVDSETRKM------FIEEIMEL 1000 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~-------------------~~~lTv~E~l~f~a~lr~~~~~~~~~~~~------~v~~~l~~ 1000 (1436)
.. ..++.+||++|...+ ++.+||+|++.+...+..... ..+.... ...++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 21 123345555554322 356799999987533321110 0000000 11235888
Q ss_pred cCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1001 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1001 l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.+...+++.|+++++.|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 899764 4555 35799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHHhhh
Q 038815 1078 PSIDIFESFDE 1088 (1436)
Q Consensus 1078 ps~~if~~FD~ 1088 (1436)
+. ..+..|+
T Consensus 264 ~~--~~~~~d~ 272 (670)
T 3ux8_A 264 ED--TMLAADY 272 (670)
T ss_dssp HH--HHHHCSE
T ss_pred HH--HHhhCCE
Confidence 75 3456787
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=4e-25 Score=286.51 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=141.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+...|+++.+ +++.+|+|+|+.+++|++++|+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 45555666554 24679999999999999999999999999999999995 111 34332
Q ss_pred ccccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++|++|+. ..++.+||.|++.+ .. . .. .+.++++++.+||. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 11 12368999874 67788999999975 11 1 11 35678999999995 5666664 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|+||+|||||+|||+.+...+++.|++ .|.|||+++|++. .+-+..|+
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adr 614 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEY 614 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999988 5899999999963 45566777
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=3e-22 Score=259.83 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh--------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 038815 311 LTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL--------ALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382 (1436)
Q Consensus 311 ~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~--------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~ 382 (1436)
.+..+|+.+||... .+ ++.+..|||||||||.||+++ +|+|||||+|||+.+...+++.|+++.+ .+
T Consensus 784 ~~~~~L~~vGL~~~---~l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KL-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BT-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hc-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35678999999642 12 245668999999999998776 7999999999999999999999999865 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 383 GTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 383 ~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
.| ||.+.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~T-VIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NT-VIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CE-EEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 55 55578888766 559999999 899999999999985
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=2.4e-22 Score=258.22 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHhhhhh--------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 038815 312 TDYYLKVLGLDI-CADTLVGDEMIRGISGGQKRRVTTGPA--------LALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382 (1436)
Q Consensus 312 ~~~~l~~lgL~~-~~~t~vg~~~~rgLSGGqrkRvsia~a--------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~ 382 (1436)
...+|+.+||.. ..+ +.+..|||||||||+||++ .+|+|||||+|||+.+..++++.|+++++ .+
T Consensus 825 ~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTT-----CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCccccc-----CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356899999975 344 3455799999999999654 46899999999999999999999999865 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 383 GTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 383 ~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 899 -~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 -DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp -CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred -CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 4555578888775 689999999 789999999998875
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=6.7e-22 Score=255.07 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=84.7
Q ss_pred HHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHhhhhh--------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 038815 312 TDYYLKVLGLDI-CADTLVGDEMIRGISGGQKRRVTTGPA--------LALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382 (1436)
Q Consensus 312 ~~~~l~~lgL~~-~~~t~vg~~~~rgLSGGqrkRvsia~a--------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~ 382 (1436)
...+|+.+||.. ..+ +.+..|||||||||+||++ .+|+|||||+|||+.+...+.+.|+++++ .+
T Consensus 843 ~~~~L~~lgL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLG-----QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTT-----CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCccccc-----CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356899999975 333 3456799999999999654 47899999999999999999999999865 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHHH
Q 038815 383 GTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVLD 422 (1436)
Q Consensus 383 ~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 422 (1436)
.+||.++|+.+++ ..+|+|++| ++|++++.|+++++..
T Consensus 917 -~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 917 -NTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp -CEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred -CEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 4555578888776 689999999 7899999999988753
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=9.4e-22 Score=253.29 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhh--------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 038815 311 LTDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGP--------ALALFMDEISNGLDSSTTFQIVNSIRQNIHIL 381 (1436)
Q Consensus 311 ~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~--------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~ 381 (1436)
.++.+|+.+||... .+ +.+..|||||||||.||+ +.+|+|||||+|||..+..++.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999762 23 445679999999999954 357899999999999999999999999875 3
Q ss_pred CCeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 382 NGTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 382 ~~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
+.+||.++|+.+++ +.+|+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 44555588888888 889999999 799999999998874
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.8e-24 Score=257.38 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=135.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-E-EEEcCccCCCCCccceEEEEcCCCC---CCCCCCH
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-R-VTYNGHNMDEFEPQRVAAYISQHDN---HIGEMTV 256 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 256 (1436)
.++|+.+++|++++|+||||||||||+|+|+|...|+ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999876 99 9 999982 3567899999873 5567899
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+ |+..... +.. ..+ .++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~-~~~--------~~~---------------------------~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT--------LLH---------------------------NKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC--------SSC---------------------------CBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Ccc--------hHH---------------------------HHHHHHHHhCCCcccc-------hhh
Confidence 9999 7543210 000 000 0112355678876543 457
Q ss_pred CCHHHHHHHhhhhh--h-----h----hheeC-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----hHHhh
Q 038815 337 ISGGQKRRVTTGPA--L-----A----LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP-----ETYDL 399 (1436)
Q Consensus 337 LSGGqrkRvsia~a--~-----v----lllDE-ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~l 399 (1436)
|||||||||++|++ + + ++||| ||+|||+. ...+.+.+++ .+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999888 5 6 99999 99999999 4444444443 45666665555431 66689
Q ss_pred cCe-----EEEec-CCeEEEecChHHHH
Q 038815 400 FDD-----IILLS-DGLIVYLGPRELVL 421 (1436)
Q Consensus 400 fD~-----vilL~-~G~iv~~G~~~~~~ 421 (1436)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.86 E-value=3.1e-22 Score=243.69 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=131.1
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC------------------------------------CeeEE
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 936 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~------------------------------------~~~~G 936 (1436)
.+++++|+.+.|| +++|+|||||||||||++|.+...+ ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999653221 01157
Q ss_pred EEEEcCeecccc---cc-cceEEEeccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 038815 937 SITISGYLKKQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAWLR-----------------------LPPEVD--- 986 (1436)
Q Consensus 937 ~i~i~g~~~~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr-----------------------~~~~~~--- 986 (1436)
.+.+||.+.... .. ...+++++|++.+... +..+...|--... +.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999876532 22 2348999998766542 4544443321100 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 038815 987 -------------------------------SETRKMFIEEIMELVELNPLR----------------QS---LVGL--- 1013 (1436)
Q Consensus 987 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~--- 1013 (1436)
.+.-...+++.++.+++.... +. ..+.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000113345566666664410 00 1111
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1014 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1014 ---~~~~~-lSgGqrkRl~ia~~L~~~p--~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.+...|.+.|++++ +|+|||+|+|+| ++.+..|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00122 6999999999999999999 9999999999999999999999999997 589999999997 4556677
Q ss_pred h
Q 038815 1088 E 1088 (1436)
Q Consensus 1088 ~ 1088 (1436)
+
T Consensus 364 ~ 364 (415)
T 4aby_A 364 H 364 (415)
T ss_dssp E
T ss_pred e
Confidence 6
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-23 Score=255.89 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=130.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-E-EEEcCeecccccccceEEEeccCCC---CCCCCCHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-S-ITISGYLKKQETFTRISGYCEQNDI---HSPLVTVY 970 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~d~---~~~~lTv~ 970 (1436)
.++|+.+++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999865 3568 8 999982 2467899999874 45567999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCCc----ceecC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1044 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~--L~~~p~i----l~lDE 1044 (1436)
|++ |......... . .+.+.++++.+||.+..+ ...|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~~--~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT--L---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC--S---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc--h---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6543211110 0 122456677788877665 25799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC--H---HHHHHhhh
Q 038815 1045 -PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS--I---DIFESFDE 1088 (1436)
Q Consensus 1045 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps--~---~if~~FD~ 1088 (1436)
||+|||.. ...+.+.++++ |.|+|+++|+.. . ++-+..|+
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999999 55555555443 889999999987 3 33356676
No 115
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=6.4e-24 Score=232.88 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=105.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++.+|+|| ++||+++|+|||||||||||++|+|. . +.+|+|............++.+||++|+. +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35688886 89999999999999999999999997 4 22344421101111123456799999975 4
Q ss_pred HHH-HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 971 ESL-LYSA----WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 971 E~l-~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
|++ .+.. .+... .. .+.++++++. ++ ||||||+|||+|+.+|++|+||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCC
Confidence 454 2211 11110 01 1234555543 22 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhhcCCcccCCCCCCccchhhhccc
Q 038815 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDGCNPATWMLEVTA 1111 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~~~g~~~~~~~~NPAd~~l~v~~ 1111 (1436)
|+| +...+++.|+++ +.|+||| ++|+++. .|. +....|...|++++..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~~-------~~~~~~G~~~~~~~~~ 179 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VDL-------PGGQKSGLRLVRHILR 179 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC------------------------CCHHHHHHTT
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH-----HhC-------cCCCCCcHHHHHHHhc
Confidence 999 888999999988 6689999 9999752 111 1223577777777654
No 116
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=2.5e-21 Score=206.16 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=100.7
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCC-CCCHHHHHHH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSP-LVTVYESLLY 975 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~-~lTv~E~l~f 975 (1436)
|||+.+++||+++|+||||||||||++++.+... .+++ + ...|+++|+..... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 11256666532100 001111111
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH---
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1052 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~--- 1052 (1436)
... +.....+.....+.. ...|+|||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 122234554444432 346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1053 -------------AAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1053 -------------~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
....+++.|+++.++|.|+|+++|++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668999999988777999999999864
No 117
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2.8e-20 Score=226.40 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=140.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-----------------------------------LKV 221 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~-----------------------------------~~~ 221 (1436)
+..+|+++++.+.+| +++|+|||||||||||++|.+...+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345899999999999 99999999999999999997766421 012
Q ss_pred ccEEEEcCccCCCCCc----cceEEEEcCCCCCCCCCCHHHHHHhhhhhccCC-C----ccchhhhhhHHhhhcCCCCCC
Q 038815 222 SGRVTYNGHNMDEFEP----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVG-S----RFDMLTELDKRENEAGIKPDP 292 (1436)
Q Consensus 222 ~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 292 (1436)
+|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.......+ +...-.+...
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~-~~~~l~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVS-RLERLQASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHC-----
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHhhhh
Confidence 6889999998754222 1347999998765543 6655554422111000 0 0000000000 0000000000
Q ss_pred -----------ChHHHH-----------HHhhhhhhHHHHHHHHHHHHcCCccccc----------c---------cccC
Q 038815 293 -----------DIDVFM-----------KAAATEGQEANVLTDYYLKVLGLDICAD----------T---------LVGD 331 (1436)
Q Consensus 293 -----------~~~~~~-----------~~~~~~~~~~~~~~~~~l~~lgL~~~~~----------t---------~vg~ 331 (1436)
.++.+. +............++..++.++++...- + .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 000000 0011111222334556677777754110 0 1110
Q ss_pred ------cccCC-CCHHHHHHHhhh-----hh--hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 332 ------EMIRG-ISGGQKRRVTTG-----PA--LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 332 ------~~~rg-LSGGqrkRvsia-----~a--~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..++. +||||||||+|| .+ .+|+|||||+|||+.+...+.+.|+++. .+.++|+ ++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~-itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLV-VTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCcH-HHH
Confidence 11222 699999999995 45 6899999999999999999999999875 2455554 66765 567
Q ss_pred hhcCeEEEe----cCCeEEEec
Q 038815 398 DLFDDIILL----SDGLIVYLG 415 (1436)
Q Consensus 398 ~lfD~vilL----~~G~iv~~G 415 (1436)
+.+|++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
No 118
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=1.5e-21 Score=234.02 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=133.1
Q ss_pred eEEeeceEeeEeCCc--------------------EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccccc
Q 038815 892 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT 951 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~ 951 (1436)
+.+|++||+.+++|+ ++||+||||||||||+|+|+|.... .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 358999999999999 9999999999999999999997653 3688888885432
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHH
Q 038815 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 1029 (1436)
Q Consensus 952 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--qrkRl~i 1029 (1436)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .+|+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889999875531 1 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCcceecCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCCH-HHHHHhhh
Q 038815 1030 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ETG----RTVVCTIHQPSI-DIFESFDE 1088 (1436)
Q Consensus 1030 a~~L~~----------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~t~Hqps~-~if~~FD~ 1088 (1436)
|++|+. +|++++|||||+|||+.+...+++.|+++. +.| .+|++++|..+. ++=++-|.
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 999999 999999999999999999999999999985 223 678899998764 34445555
No 119
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.78 E-value=5e-19 Score=210.94 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+++.|+++.+.|.|||+++|++. +.+..|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 3566676
No 120
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.77 E-value=1.8e-19 Score=211.68 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+|+|++. +.+..|+
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~ 290 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADL 290 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCce
Confidence 3579999999999999997 5789999999999999999999999999985 4889999999964 5666675
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.76 E-value=1e-19 Score=194.74 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
.++|+||||||||||+++|+|... |.++|...... ..++.+||++|+. ++.+++ + +.+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFT- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcCC-
Confidence 589999999999999999999653 23344322111 3456789999975 333333 1 111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCCcceecC--CCCCCCHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1056 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~-----L~~~p~il~lDE--PTsgLD~~~~~~ 1056 (1436)
. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 66 ---~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 66 ---S----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ---C----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ---c----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecC
Q 038815 1057 VMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1057 i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+.+.+++ .+.|+|+++|+
T Consensus 122 l~~~l~~---~~~~~i~~~H~ 139 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPI 139 (178)
T ss_dssp HHHHHTC---TTSEEEEECCS
T ss_pred HHHHHhc---CCCeEEEEEcc
Confidence 9988875 47789999983
No 122
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.74 E-value=6.1e-18 Score=201.54 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=65.3
Q ss_pred cccCCCCHHHHHHHhhhhhh-----------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+.+..|||||||||+||+++ +|||||||+|||+.+..++++.|+++.+ .+.| |+.++|+.+. .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~t-vi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKV-IVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSE-EEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCE-EEEEecchHH-HHhC
Confidence 45678999999999996554 4999999999999999999999998754 3445 4556777766 7789
Q ss_pred CeEEEecCCeEEE
Q 038815 401 DDIILLSDGLIVY 413 (1436)
Q Consensus 401 D~vilL~~G~iv~ 413 (1436)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 123
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=5.6e-20 Score=209.79 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD 986 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 986 (1436)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999754 3579999999876555556789999999999999999999988754332 111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 987 SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 987 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
. +.+.+.++ ....+.+. ..||||||||+.|||+++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11223332 23344442 4699999999999999875 999999999999987 445556655
Q ss_pred cCCEEEEEecCC
Q 038815 1067 TGRTVVCTIHQP 1078 (1436)
Q Consensus 1067 ~g~tvi~t~Hqp 1078 (1436)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
No 124
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=3.9e-20 Score=202.80 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=92.1
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
|+.++++.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~--- 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL--- 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC-----
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH---
Confidence 4555667799996 89999999999999999999999999 876 787732111111112346789999975
Q ss_pred CCCCHHHHH-HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 252 GEMTVRETL-AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 252 ~~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
+||+ .+..... ..+.. . . + ...++.+++. |
T Consensus 76 -----~enl~~~~~~~~---------~~~~~------~-~--~---------------~~~~~~~l~~-g---------- 106 (208)
T 3b85_A 76 -----NEKIDPYLRPLH---------DALRD------M-V--E---------------PEVIPKLMEA-G---------- 106 (208)
T ss_dssp ---------CTTTHHHH---------HHHTT------T-S--C---------------TTHHHHHHHT-T----------
T ss_pred -----HHHHHHHHHHHH---------HHHHH------h-c--c---------------HHHHHHHHHh-C----------
Confidence 6676 4421100 00000 0 0 0 0012333332 2
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
+ ||||||+||+++ +|+|||||+| ++.++.+.|+++ . .+++|+ ++|+..++
T Consensus 107 ------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999998776 5999999999 788888888876 3 345566 67776543
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.72 E-value=9.5e-20 Score=218.38 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=126.8
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc
Q 038815 178 LTILKDVSGIIRPGS--------------------MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge--------------------~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 237 (1436)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|..+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999987 999999997653
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHH
Q 038815 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK 317 (1436)
Q Consensus 238 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 317 (1436)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 5788899888755310 0 01345678
Q ss_pred HcCCcccccccccCcccCCCCHH--HHHHHhhhh---------------hhhhheeCCCCCCCHHHHHHHHHHHHHHHH-
Q 038815 318 VLGLDICADTLVGDEMIRGISGG--QKRRVTTGP---------------ALALFMDEISNGLDSSTTFQIVNSIRQNIH- 379 (1436)
Q Consensus 318 ~lgL~~~~~t~vg~~~~rgLSGG--qrkRvsia~---------------a~vlllDEptsgLDs~t~~~i~~~l~~~~~- 379 (1436)
.++|.+... .+. +||| ||||+.|++ |.+++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~------~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF------FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE------EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC------eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888875421 122 9999 999999954 446899999999999999999999998752
Q ss_pred ---hc---CCeEEEEEecChhh--HHhhcCeEE-EecCC
Q 038815 380 ---IL---NGTAVISLLQPAPE--TYDLFDDII-LLSDG 409 (1436)
Q Consensus 380 ---~~---~~t~ii~~~q~~~~--~~~lfD~vi-lL~~G 409 (1436)
.. ..++++...|...+ +.+++|+|. .|.+|
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 22 23455444554554 777777764 34343
No 126
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.71 E-value=1.3e-20 Score=217.02 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=109.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
.++|+|||+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46999999999999999999999999999999999997 6888 356788876665 4787
Q ss_pred H-HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 258 E-TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 258 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
| ||.|.... +. .....++.+ |++..| ...
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 6 77663100 00 011223332 444333 347
Q ss_pred CCHHHHHHHhhhhhhh----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 038815 337 ISGGQKRRVTTGPALA----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412 (1436)
Q Consensus 337 LSGGqrkRvsia~a~v----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv 412 (1436)
|||||||| ||+++ +++ |++||+.+...+.. + +| ..++.+.+|+| +|++|+++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV---TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE---EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---CC
T ss_pred cCHHHHHH---HHHHhCCCCEEE---ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEEE
Confidence 99999999 66554 334 99999999877752 1 22 23345689999 99999999
Q ss_pred EecChHHHHHHHHhc
Q 038815 413 YLGPRELVLDFFESM 427 (1436)
Q Consensus 413 ~~G~~~~~~~~F~~l 427 (1436)
+.|+++++..+|.++
T Consensus 257 ~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 257 FNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999986666553
No 127
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=1.4e-20 Score=206.82 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=115.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++| ..+++||+++|+||||||||||+++|+|... .+.+.+.+.+.+.. ...++.++|++|+...++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 457788 6999999999999999999999999999754 22333333332211 123456899999987777778877
Q ss_pred HHHHhhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 972 SLLYSAWLRL---PPEVDSETRKMFIEEI------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 972 ~l~f~a~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
++........ ....+.++.++.+++. ++.+|+.+.++... +.|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012233444455555 55555555555442 3466 88999999999
Q ss_pred cCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhhh
Q 038815 1043 DEPTSGL----DARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1043 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
||||+|+ |+..+..+++.++++.+ .|.|||+++|++. ++.+..|+.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i 198 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSL 198 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHH
Confidence 9999998 78899999999999975 5899999999974 677888884
No 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.69 E-value=1.9e-17 Score=194.32 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=62.4
Q ss_pred ccCCCCHHHHHHHhhhhh---------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 333 MIRGISGGQKRRVTTGPA---------LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a---------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||++ .+++|||||++||+.....+.+.++++. .+.++ +.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~v-i~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQF-IVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEE-EEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeE-EEEECC-HHHHhhCceE
Confidence 456799999999999664 4699999999999999999999999863 24444 446666 5678899987
Q ss_pred --EEecCCeE-EEecChH
Q 038815 404 --ILLSDGLI-VYLGPRE 418 (1436)
Q Consensus 404 --ilL~~G~i-v~~G~~~ 418 (1436)
++|.+|+. +.....+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 88888854 3333333
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.69 E-value=5.4e-19 Score=204.69 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=118.0
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cc--cceEEEeccCCC-CC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TF--TRISGYCEQNDI-HS 964 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~d~-~~ 964 (1436)
++++|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999654 2358899999764321 12 246899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--ccee
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1042 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~l 1042 (1436)
|.+|++|++.++.. + . .+ ..+++.+|+.+..+..+ ..|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~--~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-T--CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-C--Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 1 00 13456677776665553 4688 999999999999999 9999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCC
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQP 1078 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp 1078 (1436)
| ||+|||+... ++++.+ .|.|+|+++|..
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLD 257 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCC
Confidence 9 9999998754 244443 489999999953
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.69 E-value=1.1e-18 Score=199.22 Aligned_cols=143 Identities=11% Similarity=0.152 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCc
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 272 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 272 (1436)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence 47999999999999999999999887 9999999998765545578999999999999999999998864322100
Q ss_pred cchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhhh
Q 038815 273 FDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352 (1436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v 352 (1436)
..+.. ...+. .+..+. ....|||||||||.+|++.+
T Consensus 79 --------------------~~~~i---------------~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 79 --------------------CWEPI---------------EKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp --------------------CSHHH---------------HHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCE
T ss_pred --------------------HHHHH---------------HHHHH----HHHHhh-----hHHhcCcccchhhhhheeee
Confidence 00000 00000 111122 22369999999999988774
Q ss_pred --hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 038815 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL 390 (1436)
Q Consensus 353 --lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~ 390 (1436)
+++|||+.|||+.. .+.++.+.+ . .++|++++
T Consensus 115 ~lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 CLYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp EEEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred eeEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 89999999999987 334444433 2 55555443
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.68 E-value=3.3e-20 Score=205.48 Aligned_cols=176 Identities=10% Similarity=-0.011 Sum_probs=113.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~l 967 (1436)
+.-|+|||+.+++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|+...++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 457999999999999999999999999999999999652 66777 654321 12345689999986554433
Q ss_pred CH-HHHHH---HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCC
Q 038815 968 TV-YESLL---YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPS 1038 (1436)
Q Consensus 968 Tv-~E~l~---f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~i-----a~~L~~~p~ 1038 (1436)
+. .+++. +..... ..+ ...++++++..++. +.. ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 21 11111 111110 011 12356666654321 111 3689999999999 899999999
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHH-------cCCEEEEEecCCCHHHHHHhhhhc
Q 038815 1039 IIFMDEPTSGLDARAAAIVMRTVKNTVE-------TGRTVVCTIHQPSIDIFESFDEAI 1090 (1436)
Q Consensus 1039 il~lDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~t~Hqps~~if~~FD~~~ 1090 (1436)
+++|||||+++|..+...|.+.|++..+ .+.+.|++.|++ .+.++..|+.+
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999998877543 356788888875 46777777743
No 132
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.67 E-value=5.3e-18 Score=181.43 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC---CccceEEEEcCCCCCCCCCCHHHHHHhhhhhccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF---EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 269 (1436)
.++|+||||||||||+++|+|.+. |.++|.+..+. ..++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh---
Confidence 579999999999999999999974 22344332111 2245689999975 222222 10 00
Q ss_pred CCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhh
Q 038815 270 GSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349 (1436)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~ 349 (1436)
+... +..+ ++.+..||||||||++|++
T Consensus 63 --------------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~ 89 (178)
T 1ye8_A 63 --------------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILE 89 (178)
T ss_dssp --------------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHh
Confidence 0000 0111 2344579999999999988
Q ss_pred h-----h-----hhheeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhhHHhhcCeEEEecCCeEEE
Q 038815 350 A-----L-----ALFMDE--ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL--QPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 350 a-----~-----vlllDE--ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
+ + +++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|++++
T Consensus 90 aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 90 RAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4 599999 9999999999888888865 3556777775 788888888988 5677765
No 133
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.67 E-value=1.6e-17 Score=176.76 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=48.4
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSS----------------TTFQIVNSIRQNIHILNGTAVISLLQPAP 394 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~----------------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 394 (1436)
..||||||||+||+++ +++|||||+|||+. ...++.+.++++.+. +.|+ +.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tv-i~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRY-VYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSE-EEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcE-EEEeCCHH
Confidence 4699999999998876 59999999999999 558888888877654 5454 45678777
Q ss_pred hHHh
Q 038815 395 ETYD 398 (1436)
Q Consensus 395 ~~~~ 398 (1436)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
No 134
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.66 E-value=1.5e-18 Score=210.72 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=135.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc---cCCCC--------CccceEEEEc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH---NMDEF--------EPQRVAAYIS 245 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~ 245 (1436)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 46699999 999999999999999999999999999999987 999999998 44332 1246799999
Q ss_pred CC-CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 246 QH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 246 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
|+ +..++.+||.+|+.+.++.... . + .++
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~-----------------------------------~-~~v 249 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------R-----------------------------------G-QHV 249 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------T-----------------------------------T-CEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------C-----------------------------------C-CCH
Confidence 95 5567788999999886543210 0 0 000
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhhhheeCC--CCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecChhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALALFMDEI--SNGLDSSTTFQIVNSIRQNIHI--LNGT-----AVISLLQPAPE 395 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~vlllDEp--tsgLDs~t~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~~~ 395 (1436)
.. .+ + .+..+|||| |||+|| +.|| |+|||+.+..++.+.++++.+. .+++ +|+..+|+..
T Consensus 250 ~~-~l-d-~l~~lS~g~-qrvslA------l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 250 LL-IM-D-SLTRYAMAQ-REIALA------IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp EE-EE-E-CHHHHHHHH-HHHHHH------TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred HH-HH-H-hHHHHHHHH-HHHHHH------hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 00 00 1 133599999 999998 5667 9999999999999999886431 1242 5555667766
Q ss_pred HHhhcCeEEEecCCeEEEecChHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
...+|++++|.+|+++..|+..++
T Consensus 319 -~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 -DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -chhhceEEEEeCcEEEEeCCHHHc
Confidence 678999999999999999987664
No 135
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.66 E-value=3e-18 Score=202.00 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=118.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccc--cceEEEeccCCC-CCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETF--TRISGYCEQNDI-HSP 965 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~--~~~~gyv~Q~d~-~~~ 965 (1436)
+.+|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+... ..+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999654 235889999976432 112 346899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceec
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1043 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lD 1043 (1436)
..|++|++.++.. + . .+ ..+++.+|+.+..+..+ ..|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 1 10 13455677776665553 4688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
||+|||+.... +++.+ .|.|+|+++|.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.65 E-value=3e-17 Score=192.65 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=96.5
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.-. ...++.++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997653 46999999853110 00122222221
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+++.|+.+...+.|+|+|+|+++ ..+..|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dr 283 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIR 283 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHH
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhh
Confidence 2356677776543458999999987 5677887
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.64 E-value=6.5e-19 Score=193.48 Aligned_cols=185 Identities=10% Similarity=0.030 Sum_probs=108.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
..++++| ..|++|++++|+||||||||||+|+|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 3457888 68999999999999999999999999999852 23333333322211 123568999999888888888
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHH------HHHcCCccccccccc
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY------LKVLGLDICADTLVG 330 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~~t~vg 330 (1436)
.|++.+.....+....+. ..+.+ ....++.. ++.+|+.+..+
T Consensus 82 ~~~l~~~~~~~~n~~~~g----~~~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~---- 129 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSG----TLAQP------------------------VRAAAATGVPVLIEVDLAGARAIKK---- 129 (207)
T ss_dssp TTCEEEEEEEGGGTEEEE----EEHHH------------------------HHHHHHHTCCEEEECCHHHHHHHHH----
T ss_pred cCCceeehhhcCchhhcC----CcHHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHH----
Confidence 887754321111000000 00000 00111111 22233332222
Q ss_pred CcccCCCCHHHHHHHhhhhhhhhheeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 331 DEMIRGISGGQKRRVTTGPALALFMDEISNGL----DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~vlllDEptsgL----Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
..++.|| +-+..|.+++|||||+|| |+..+.++.+.++++.+..+.|+ +.++|+.+++..++|+|++|
T Consensus 130 -~~~~~lS------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 130 -TMPEAVT------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp -HCTTSEE------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHHHHHHHHC-
T ss_pred -hcCCcEE------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHHHHHHHHHh
Confidence 2233455 223567789999999998 78899999999998865444444 55789999999999999998
Q ss_pred c
Q 038815 407 S 407 (1436)
Q Consensus 407 ~ 407 (1436)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 5
No 138
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.64 E-value=8.6e-16 Score=181.55 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrk------Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||| |+++|++|+.+|++|+|||||+|||+.+...+++.|+++.+.|.|||+++|++ ++++..|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 4679999999 66778888889999999999999999999999999999887789999999995 45666666
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.63 E-value=6.7e-19 Score=194.98 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=89.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 253 (1436)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88888 776543322 3467899998765554
Q ss_pred CCH-HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 254 MTV-RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 254 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
++. .+++.+. ... +..|.. . ...++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~----~----------------------------~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT----L----------------------------KSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE----E----------------------------HHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC----c----------------------------HHHHHHHHhCCCc-----EEEE--
Confidence 331 1111110 000 000000 0 0012333333221 1111
Q ss_pred ccCCCCHHHHHHHhh-----hh-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 333 MIRGISGGQKRRVTT-----GP-----ALALFMDEISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsi-----a~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
..+|||||||+++ ++ +.+++|||||+++|..+...+.+.++....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3699999999999 43 335899999999999999899888877543
No 140
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.61 E-value=2.5e-17 Score=190.78 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=119.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------ccceEEEEcCCCC-C
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------PQRVAAYISQHDN-H 250 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 250 (1436)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45788899999999999999999999999999999876 899999998865421 1235899999988 8
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
+|.+||+|++.++.. .+ ++ ..+++.+|+.+..+..
T Consensus 167 ~~~~~v~e~l~~~~~-~~----~d--------------------------------------~~lldt~gl~~~~~~~-- 201 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYSL-- 201 (302)
T ss_dssp CHHHHHHHHHHHHHH-TT----CS--------------------------------------EEEECCCCCSSCCHHH--
T ss_pred CHHHHHHHHHHHHHH-cC----Cc--------------------------------------chHHhcCCCCcchhHH--
Confidence 999999999987532 10 00 0023345665544433
Q ss_pred CcccCCCCHHHHHHHhhhh-----hh--hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 038815 331 DEMIRGISGGQKRRVTTGP-----AL--ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP---------AP 394 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~-----a~--vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~ 394 (1436)
+..|| |||++|++ |. +|+|| ||+|||+... ++++.+..+.|+++ ++|. ..
T Consensus 202 ---~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 202 ---MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ---HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ---HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 34588 99999974 45 79999 9999998754 23333334556655 4552 22
Q ss_pred hHHhhcCeEEEecCCeE
Q 038815 395 ETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 395 ~~~~lfD~vilL~~G~i 411 (1436)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33456678888888864
No 141
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=5.2e-17 Score=183.10 Aligned_cols=155 Identities=8% Similarity=0.000 Sum_probs=97.8
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCH
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+++.+|+|||+.+++|+++||.||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999853 112222 2356789999986 5677899
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
.|++.+....... +.+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764332111 101111122334444433 2333333 35799999999988 5778899999999999888
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
|.. ++++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2222 37899999996
No 142
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.58 E-value=2.4e-17 Score=191.83 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+++|+++||+||||||||||+++|+|..... +|. +.++|++|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 8999999999999999999999999964321 121 457999999999888 999998542211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
..+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+||+||||++.+|.
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222345678888887 44444432 47999999999999999999999999999999985
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.57 E-value=1.2e-16 Score=193.88 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=121.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe---eccc--------ccccceEEEeccC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---LKKQ--------ETFTRISGYCEQN 960 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 960 (1436)
..+|+++ +.+.+|++++|+|||||||||||++|+|.... ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999997653 4799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 961 -DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 961 -d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
+...+.+||.+++.+.+....... ++++ .+.|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHVL------LIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEEE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCHH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 555677899999887654321000 0000 11121 34699999 999999 888888
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCCHHHHHHhhh
Q 038815 1040 IFMDEPTSGLDARAAAIVMRTVKNTVE---T-GR-----TVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1040 l~lDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.+...+.+.++++.+ . |. ||++++|+.+. ...|+
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~---~iad~ 324 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQD---PIADS 324 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCC---HHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccc---hhhce
Confidence 999999999999999999866 3 64 99999999983 34565
No 144
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.56 E-value=4.7e-18 Score=195.75 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=91.3
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH-
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE- 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E- 971 (1436)
.+|++||+.|++|+++||+||||||||||+++|+|.. +|+| ++|++|+..+++ .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHH
Confidence 4899999999999999999999999999999999965 3555 346677766655 47776
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
|+.|.. +.+. .+++.++.+ |.+..| | ..|||||||| ||+|+.+|+||+ ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 775531 1111 234555553 333333 2 4799999999 999999999999 999999
Q ss_pred HHHHHHH
Q 038815 1052 RAAAIVM 1058 (1436)
Q Consensus 1052 ~~~~~i~ 1058 (1436)
.+...|.
T Consensus 227 ~~~~~i~ 233 (305)
T 2v9p_A 227 QAEDRYL 233 (305)
T ss_dssp TTCGGGG
T ss_pred HHHHHHH
Confidence 9998886
No 145
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.56 E-value=3.8e-15 Score=175.87 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred CcccC-CCCHHHHHHHhhhhh--------------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 331 DEMIR-GISGGQKRRVTTGPA--------------LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 331 ~~~~r-gLSGGqrkRvsia~a--------------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+..++ .+|||||||++||++ .+|+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 45566 799999999999543 469999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEecCCeEEEecChHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 146
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=2e-16 Score=186.52 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=119.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------ccceEEEEcCCCC-CC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------PQRVAAYISQHDN-HI 251 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 251 (1436)
+.+|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688889999999999999999999999999999876 899999998864321 1235899999988 88
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
|.+||+|++.++.. ++ ++ ..+++.+|+.+..+.
T Consensus 225 p~~tv~e~l~~~~~-~~----~d--------------------------------------~~lldt~Gl~~~~~~---- 257 (359)
T 2og2_A 225 AATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYS---- 257 (359)
T ss_dssp HHHHHHHHHHHHHH-TT----CS--------------------------------------EEEEECCCCSSCCHH----
T ss_pred hhhhHHHHHHHHHh-CC----CH--------------------------------------HHHHHhcCCChhhhh----
Confidence 99999999988632 10 00 001234556554433
Q ss_pred cccCCCCHHHHHHHhhhh-----hh--hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhh
Q 038815 332 EMIRGISGGQKRRVTTGP-----AL--ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP---------APE 395 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~-----a~--vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 395 (1436)
.+..|| |||+.|++ |. +|+|| ||+|||+.... +.+.+..+.|+|+ ++|. ...
T Consensus 258 -~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 258 -LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp -HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred -HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 334688 99999975 44 79999 99999987652 3333334556655 5552 223
Q ss_pred HHhhcCeEEEecCCeE
Q 038815 396 TYDLFDDIILLSDGLI 411 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~i 411 (1436)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888888753
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=7.5e-16 Score=178.63 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=102.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEE-EcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SIT-ISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~-i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
.+|+++++.+++|++++|+||||||||||++.|+|.... ..| .|. +++. .......+.+.++.|... +++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e-~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE-ESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS-SCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc-CCHHHHHHHHHHHHcCCC----hhhc
Confidence 479999999999999999999999999999999995421 124 443 3332 222222222223333221 2233
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCCcceecCCCC--
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1047 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq-rkRl~ia~~L~~~p~il~lDEPTs-- 1047 (1436)
+++... .+ +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~-~~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKRE-II------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHH-HH------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccC-CC------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 444322 11 1122233344444322221 1111 13588998 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCC
Q 038815 1048 -G---LDA-RAAAIVMRTVKNTVET-GRTVVCTIHQP 1078 (1436)
Q Consensus 1048 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~t~Hqp 1078 (1436)
+ +|. .....+++.|++++++ |.|||+++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 5 555 6778899999999865 99999999996
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.54 E-value=3.4e-15 Score=169.46 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=90.6
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCee-EEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.+.. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~-------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI-------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE--------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee--------
Confidence 789999 89999999999999999999999999653 23 689998886532 223321100
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
.. . +.+++.. ..+ |++||++|..+|++|++|||| |..
T Consensus 75 ------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 00 0 0122211 122 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+...+ ++. ++.|.+|++|+|+++ ..+..|+
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dr 141 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHR 141 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHH
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHH
Confidence 86544 333 456999999999976 4567777
No 149
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.52 E-value=3.4e-16 Score=182.08 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=86.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQ 267 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 267 (1436)
+++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~ 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-K 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-c
Confidence 7899999999999999999999999998774 342 348999999999888 99999865211 1
Q ss_pred cCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhh
Q 038815 268 GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT 347 (1436)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsi 347 (1436)
+.... .+ .......++.++ ....+.. +..+||||||||++
T Consensus 148 g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 148 GFPES-------------------YN---------------RRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPG 187 (312)
T ss_dssp TSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEE
T ss_pred CCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhh
Confidence 11000 00 112344566666 3333333 34699999999998
Q ss_pred hhh-----hhhheeCCCCCCCH
Q 038815 348 GPA-----LALFMDEISNGLDS 364 (1436)
Q Consensus 348 a~a-----~vlllDEptsgLDs 364 (1436)
+++ .++++|||+..+|+
T Consensus 188 a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCC
T ss_pred HHHhccCCCEEEECCccccCCc
Confidence 654 47999999999986
No 150
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.51 E-value=3e-14 Score=168.21 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1018 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~---------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
.+|||||||++||++|+ .+|+||+|||||++||+.....+++.|+++. .|+|+++|.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence 69999999999999999 8999999999999999999999999998863 799999994
No 151
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=9.3e-17 Score=176.51 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=113.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCC--CCCCHHHHHHHhhhh
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWL 979 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~a~l 979 (1436)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|++|++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986421 368999998776 5679988875531
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCCcceecCCCCC-------
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1048 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq----rkRl~ia~~L~~~p~il~lDEPTsg------- 1048 (1436)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123466778888887655443 34688886 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHH
Q 038815 1049 LDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDI 1082 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~-~~~g~tvi~t~Hqps~~i 1082 (1436)
||+.....+.+.+++. .+.|+|++.++|+....+
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~ 165 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYLEQV 165 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999999999999875 456999999999744333
No 152
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.50 E-value=1.7e-15 Score=178.44 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=121.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC----------CccceEEEEcC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----------EPQRVAAYISQ 246 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 246 (1436)
.+.+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 46699999 999999999999999999999999999999987 89999988652111 01245666666
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
.+. ...+.+.-.... ....+ .....| .+
T Consensus 134 ~~~-----~~~~r~~~~~~~------------------------------------------~~~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA------------------------------------------TTIAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH------------------------------------------HHHHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH------------------------------------------HHHHH-HHHhcc----cc
Confidence 542 222222110000 00000 111111 11
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhhhheeCC-CCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhhHHhhc
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALALFMDEI-SNGLDSSTTFQIVNSIRQNIHILNGT-----AVISLLQPAPETYDLF 400 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~vlllDEp-tsgLDs~t~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~~lf 400 (1436)
..+--+.+..+|+|| |||+++ +-|.| |+|||+....++.+.+++.....+++ +|+..+|+.. ..++
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la-----l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~ 233 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA-----SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIG 233 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH-----TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHH
T ss_pred HHHHHhhHHHHHHHH-HHHHHH-----cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhh
Confidence 110002345699999 899998 34555 69999999999999998764312344 5565667766 5789
Q ss_pred CeEEEecCCeEEEecChHHH
Q 038815 401 DDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~ 420 (1436)
|++++|.+|+++..|+.++.
T Consensus 234 d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 234 DEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHCSEEEEBCHHHHTT
T ss_pred hheEEeeCcEEEEeCCHHHc
Confidence 99999999999999987664
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.50 E-value=2.6e-15 Score=174.09 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-RVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
..++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 345899999999999999999999999999999999998764 56 66554432211000011111111110 01
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.+++..+ .....+.....+.+++..++. +. +.+.
T Consensus 94 ~~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~-~~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LY-DSFA 128 (296)
T ss_dssp GCHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EE-CCCC
T ss_pred hccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EE-CCCC
Confidence 11111110 000011112233333322221 11 1223
Q ss_pred CCCHHH-HHHHh----hhhhhhhheeCCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h-------
Q 038815 336 GISGGQ-KRRVT----TGPALALFMDEISN---G---LDS-STTFQIVNSIRQNIHILNGTAVISLLQPA--P------- 394 (1436)
Q Consensus 336 gLSGGq-rkRvs----ia~a~vlllDEpts---g---LDs-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------- 394 (1436)
.+|.+| +||+. ...|.++++||||+ + +|. ....++++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 588898 66664 13456799999999 5 555 66788999999998766666665 55553 3
Q ss_pred -------------hHHhhcCeEEEecCCeE
Q 038815 395 -------------ETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 395 -------------~~~~lfD~vilL~~G~i 411 (1436)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 154
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.49 E-value=2e-15 Score=170.18 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=81.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
+.+++|+|||+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ .++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4566999999999999999999999999999999999975 323232 1345689999985 678899
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.|++.+.......... . ..+.+ .....++.+ .+..+. .+.
T Consensus 75 ~~~~~~~~~~~~~~~~~----~-------------~~~~~---------------~~~~~L~~l--~~~~~~-----~~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----D-------------AFDND---------------LMHRTLKNI--VEGKTV-----EVP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----G-------------GBCHH---------------HHHHHHHHH--HTTCCE-----EEC
T ss_pred HhHhhhhhccCCCCCCc----c-------------cccHH---------------HHHHHHHHH--HCCCCe-----ecc
Confidence 99998775332211000 0 00000 011223322 233332 345
Q ss_pred CCCHHHHHHHhh----hhhhhhheeCCCCCCCHH
Q 038815 336 GISGGQKRRVTT----GPALALFMDEISNGLDSS 365 (1436)
Q Consensus 336 gLSGGqrkRvsi----a~a~vlllDEptsgLDs~ 365 (1436)
.+|+||+||+.+ .++.++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSSCEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCceEEecCCCEEEEeCccccccHH
Confidence 799999999976 345689999998888763
No 155
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=9.6e-15 Score=190.21 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=97.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++.+++|||+.+++|++++|+|||||||||||+++++...... .|...... ...++++ +..+..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3568999999999999999999999999999999986311000 01000000 0011111 1111111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 135689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVM-RTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~-~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.....+. .+++.+++ .|.|||+++|++. +.+..|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99988887 77777765 5999999999964 4455554
No 156
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.48 E-value=1.5e-13 Score=162.39 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=58.2
Q ss_pred cccCCCCHHHHHHHhh------h-----hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 332 EMIRGISGGQKRRVTT------G-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsi------a-----~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
..+..|||||||||+| + .|.+|+|||||+|||+..+..+++.|+++.. .+.++++ ++|+ +++.+.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~-~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEE-EESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EECh-HHHHHhC
Confidence 4567899999996544 3 3457999999999999999999999998754 3455544 6666 5688999
Q ss_pred CeEEEec
Q 038815 401 DDIILLS 407 (1436)
Q Consensus 401 D~vilL~ 407 (1436)
|+|++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 157
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.47 E-value=3.2e-15 Score=175.46 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=46.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee
Confidence 799999999999999999999999999999999999987 9999999863
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=2.6e-15 Score=168.96 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=93.3
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHH--CC-CCCCeeEEEEEEcCeecccc--cccceEEEeccCCCCCCCCCHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYITGSITISGYLKKQE--TFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~La--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+-+++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+||++|+....+.+++.+...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 489999999999999999999999999 54 322 35566666432211 12234566666544444445444332
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC----
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD---- 1050 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD---- 1050 (1436)
..... ... ..... ....+.++..+...+..-..+|+++++||||++||
T Consensus 102 ~~~~~------~~~----~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d 153 (251)
T 2ehv_A 102 SVVGL------PSE----EKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE 153 (251)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS
T ss_pred ccccc------ccc----cceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC
Confidence 11000 000 00000 01233455544444444467999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 038815 1051 -ARAAAIVMRTVKNTVETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1051 -~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1081 (1436)
......+.+.++.+++.|.|||+++|+....
T Consensus 154 ~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 6777779999999888899999999997653
No 159
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.47 E-value=5.4e-15 Score=195.61 Aligned_cols=135 Identities=21% Similarity=0.168 Sum_probs=100.0
Q ss_pred eEEeeceEeeEeC-------CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEE-EeccCCCC
Q 038815 892 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISG-YCEQNDIH 963 (1436)
Q Consensus 892 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~d~~ 963 (1436)
..+++|+++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 4689999999988 999999999999999999999 75420 12344 8999753
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
.+||.|++.. + +|+.+..+. +.+.+|+|++ ++++|++++.+|++++||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~-~~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELS-ETASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHH-HHHHHHHhCCCCcEEEEE
Confidence 4566555411 1 111111110 1235677666 599999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1044 EPTSGLDARA-AAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1044 EPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
|||+|+|+.. ...++..|+.+++. |+++|++||++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 9999999987 46678999999876 999999999853
No 160
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=2.2e-14 Score=184.41 Aligned_cols=128 Identities=21% Similarity=0.141 Sum_probs=95.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++|+|+. |++++|+|||||||||||++|+|.... ...|.+ ... .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHHH
Confidence 5689999999 999999999999999999999985310 001221 111 1245677776 344455555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCcceecCC---C
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1046 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L--~~~p~il~lDEP---T 1046 (1436)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 441 25799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1047 SGLDARAA-AIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1047 sgLD~~~~-~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
++||..+. ..+++.|++ .|.|+|+++|++.
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99998875 578888776 4899999999853
No 161
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.46 E-value=1.1e-13 Score=181.05 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=94.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
...+++|+++.+.+|++++|+|||||||||||+++++..-- ... | +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~------G------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQI------G------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHH------T------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-Hhc------C------------CccccccccchH----
Confidence 35689999999999999999999999999999999431000 000 0 011110000000
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCcceecCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEPTSG 1048 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L--~~~p~il~lDEPTsg 1048 (1436)
+++++..+|+. |.+ .+++|+++++++.+|+++ +.+|++++|||||+|
T Consensus 705 -----------------------~d~i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 00001111111 111 246888888888888888 899999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i-~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|+.....+ +.+++.+.+ .|+|+|++||++ ++.+..|+
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~ 793 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQ 793 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcc
Confidence 999988877 667777776 499999999994 55677776
No 162
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.46 E-value=4.3e-14 Score=146.02 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia------~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++|| ++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|+|||+++|++ ++.+..|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 468999999999886 899999999999999999999999999999999877799999999997 34455665
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=8.6e-16 Score=178.27 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=85.5
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC-CCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3467999999998 99999999999999999996 32 3456 7777765432222355789999888878899
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|.|+.-+...... .+.....++.+.+ ..+.. .+++|||||||+.+|++++ +|++||||++
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998876533210 0000111222211 12222 3579999999999888875 9999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1049 -LDARAAAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1049 -LD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556666543 778999999964
No 164
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.43 E-value=5.8e-15 Score=170.97 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TF--TRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996542 258899999764221 11 245899999998888889999987
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
++.. +. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6421 10 00 011222233222211 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1055 AIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1055 ~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
..+++.++++.+. |.|+|+++|...
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4566666766554 899999999753
No 165
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=5.4e-15 Score=171.52 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=78.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK-LDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 249 (1436)
++++.+++.+++|+++.| +|+||||||||||++.|.|. ..+. +| |.++|.++......+.++|+.|++.
T Consensus 4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp --------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---
T ss_pred CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCC
Confidence 344556678999999998 99999999999999999997 6665 78 8888876643222345789999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
....+||.||..++.... ..+.. ....+.+.+. .
T Consensus 74 ~~~~ltv~Dt~g~~~~~~-------------~~e~~-----------------------~~l~~~l~~~------~---- 107 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAIN-------------CRDCF-----------------------KTIISYIDEQ------F---- 107 (301)
T ss_dssp CCEEEEEEEEC------------------------C-----------------------TTHHHHHHHH------H----
T ss_pred cccCcchhhhhhhhhhcC-------------cHHHH-----------------------HHHHHHHHHH------H----
Confidence 888899999987753211 00000 0001111111 1
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-hhheeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-ALFMDEISNG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-vlllDEptsg-LDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
+.+.+++|||||||+.++++. ++++||||++ ||+... +.++.+.. ....++|...|+.
T Consensus 108 -~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 108 -ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp -HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred -HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 133457999999999999887 5899999985 999873 44554432 2244555555544
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.43 E-value=1.9e-13 Score=157.02 Aligned_cols=151 Identities=20% Similarity=0.170 Sum_probs=102.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
-+++|++++|+||||||||||++.+++... .|.+ +.|.... -...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 489999999999999999999999997432 2333 2243221 12346777665432 11111211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC--CCCHHH---HH
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1055 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs--gLD~~~---~~ 1055 (1436)
. .... ..++++++.+++.+..+.. +..+|+||++++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 2346678888887765543 356999998865 68889999999999999 999744 48
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
.+++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999874 5999999999874
No 167
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.42 E-value=1.9e-13 Score=170.59 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=59.7
Q ss_pred ccCCC-CHHHHHHHhhhh-----h--hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 333 MIRGI-SGGQKRRVTTGP-----A--LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 333 ~~rgL-SGGqrkRvsia~-----a--~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.+..| ||||||||+||+ | .+|+|||||+|||..++..+.+.|+++++ +.+ |+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCHH-HHHhCCEEE
Confidence 35667 999999999954 5 68999999999999999999999999864 445 455677754 556799999
Q ss_pred EecCC
Q 038815 405 LLSDG 409 (1436)
Q Consensus 405 lL~~G 409 (1436)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99665
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.40 E-value=2.2e-14 Score=159.35 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=85.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCC---CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+-+++|++++|+||||||||||+++|+|. .+. +...|.+.+++.... ..+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 57999999999999999999999999983 221 122356677664210 01112233332222211 2222221
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhh-------CCCcceecCCC
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELVA-------NPSIIFMDEPT 1046 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg-GqrkRl~ia~~L~~-------~p~il~lDEPT 1046 (1436)
+. ...+. .+++++..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 11233 33444566666666 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-cCCEEEEEecCCCH
Q 038815 1047 SGLDAR-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1047 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~t~Hqps~ 1080 (1436)
+++|+. . ...+++.|+++++ .|.|||+++|....
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC
Confidence 999983 2 2367888888765 49999999996543
No 169
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.39 E-value=2e-13 Score=178.54 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCHHHHHHHhhh-------hhhhhheeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 336 GISGGQKRRVTTG-------PALALFMDEISNGLDSSTTFQI-VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 336 gLSGGqrkRvsia-------~a~vlllDEptsgLDs~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++|+|+++++.++ .+.+++|||||+|||+.....+ ...++.+.+..+.++++ ++|. .++.+++|++..+.
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~-aTH~-~el~~lad~~~~v~ 798 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF-ATHF-HELTALANQIPTVN 798 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE-EESC-GGGGGGGGTCTTEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE-EcCc-HHHHHHhcccceeE
Confidence 5676666666553 3457999999999999998888 45556655433555555 5666 56778999999999
Q ss_pred CCeEEEecChHHH
Q 038815 408 DGLIVYLGPRELV 420 (1436)
Q Consensus 408 ~G~iv~~G~~~~~ 420 (1436)
+|++...++.+++
T Consensus 799 ng~v~~~~~~~~l 811 (934)
T 3thx_A 799 NLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEETTEE
T ss_pred eeEEEEEecCCcE
Confidence 9999988876553
No 170
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.39 E-value=8.1e-14 Score=180.18 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=94.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+++|+++. ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 5689999999 9999999999999999999999998421000 12111111 133555554 334445555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
++... .+.+|+|++ ++..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 123566665 45555567899999999999999998
Q ss_pred HHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i-~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.....+ +..++.+.+ .|.|+|++||++. +.+..|+
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~ 738 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEK 738 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhh
Confidence 776665 788888887 4999999999974 3455565
No 171
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.39 E-value=8.8e-14 Score=163.91 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=107.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----------ccccceEEEeccCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----------ETFTRISGYCEQND 961 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~d 961 (1436)
..+|+++ +.+.+||+++|+||||||||||+++|+|...+ ..|.|.+.|..... ..+++.++++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 99999999999999999999999999997654 36888888854211 12345677777754
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 038815 962 IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041 (1436)
Q Consensus 962 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~ 1041 (1436)
. ...+.+.-.. ....+.+.....+ .+.++=...+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 1222221000 0000111111111 11110001135799999 899999 578877
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCCHHHHHHhhh
Q 038815 1042 MDEPTSGLDARAAAIVMRTVKNTVE--TGR-----TVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1042 lDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.....+.+.++++.+ .|. ||++++|+.+..+ .|+
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i---~d~ 235 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPI---GDE 235 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHH---HHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChh---hhh
Confidence 999999999999999999874 477 8999999988443 555
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.37 E-value=2.9e-14 Score=168.77 Aligned_cols=143 Identities=20% Similarity=0.159 Sum_probs=95.6
Q ss_pred Eeece-EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC--C--CCeeEEE-EEEcCeecccccccceEEEeccCCCCCCCC
Q 038815 894 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--T--GGYITGS-ITISGYLKKQETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 894 iL~~v-s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~--~--~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 967 (1436)
.|+++ +|.+++|++++|+||||||||||++.|++.. . .|...|. |++++.... .++.++++.|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 35555 5899999999999999999999999999854 2 1112356 788875321 12234445554332221
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCCcc
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1040 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-------~~p~il 1040 (1436)
++.|++.+. +. --|.+|++++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 333332211 00 01456777777777777 689999
Q ss_pred eecCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1041 FMDEPTSGLDARA------------AAIVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1041 ~lDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
++||||+++|+.. ...+++.|+++++ .|.|||+|+|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 4899999999754
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.37 E-value=7e-14 Score=155.22 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---C-CcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS---L-KVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~---~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
+-+++|++++|+||||||||||+++|+|...+. . ...|.|.+++.+. ...+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 569999999999999999999999999954431 0 1245777777542 112345566666555554 7777765
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHH-HcCCcccccccccCcccCCCCHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK-VLGLDICADTLVGDEMIRGISGG 340 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgL~~~~~t~vg~~~~rgLSGG 340 (1436)
+..... ..+. . .........++ .+.-
T Consensus 96 ~~~~~~-------------~~~~-------------~--------~~~~~~~~~~~~~~~~------------------- 122 (231)
T 4a74_A 96 VARAFN-------------SNHQ-------------M--------LLVQQAEDKIKELLNT------------------- 122 (231)
T ss_dssp EEECCS-------------HHHH-------------H--------HHHHHHHHHHHHHTTS-------------------
T ss_pred EEecCC-------------hHHH-------------H--------HHHHHHHHHHHHhccc-------------------
Confidence 532110 0000 0 00000111111 0000
Q ss_pred HHHHHhhhhhhhhheeCCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh----hHHhhcCeEE
Q 038815 341 QKRRVTTGPALALFMDEISNGLDSST------------TFQIVNSIRQNIHILNGTAVISLLQPAP----ETYDLFDDII 404 (1436)
Q Consensus 341 qrkRvsia~a~vlllDEptsgLDs~t------------~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~lfD~vi 404 (1436)
...+.++++||||++||+.. ..++++.|+++++..+.|+| .++|... .+...+|.++
T Consensus 123 ------~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi-~vtH~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 123 ------DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQANGGHILAHSATLRV 195 (231)
T ss_dssp ------SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEE-EEEECC---------CCSEEE
T ss_pred ------CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEE-EEeecccCcchhhHhhceEEE
Confidence 12467899999999999841 23788888887765555554 4677443 4888999999
Q ss_pred EecCC
Q 038815 405 LLSDG 409 (1436)
Q Consensus 405 lL~~G 409 (1436)
.|++|
T Consensus 196 ~l~~~ 200 (231)
T 4a74_A 196 YLRKG 200 (231)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99875
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.35 E-value=3.9e-13 Score=158.88 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
...+|++++|+|||||||||||++|+|..... ..|.|...+.+.. .......+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999964311 1244433222211 111112233333322111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~ 1060 (1436)
.++..+ +||++|..+|++|++|||| |..+...
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 122222 8999999999999999999 6665444
Q ss_pred HHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1061 VKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1061 l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.+++.+|.||++|+|+++.. +.+|+
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~~--~~~dR 239 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSAA--KTIDR 239 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSHH--HHHHH
T ss_pred HHHHHhcCCEEEEEEccChHH--HHHHH
Confidence 344466799999999998753 77787
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.34 E-value=2e-14 Score=161.65 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=42.0
Q ss_pred hhhhhhheeCCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH---------Hhhc-CeEEEec
Q 038815 348 GPALALFMDEISNGLD-----SSTTFQIVNSIRQNIHILNGTAVISLLQPAPET---------YDLF-DDIILLS 407 (1436)
Q Consensus 348 a~a~vlllDEptsgLD-----s~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~---------~~lf-D~vilL~ 407 (1436)
..|.++++||||++|| ...+..+.+.++.+.+ .+.|+++ ++|...++ ..++ |+|++|+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~-vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTIL-TTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEE-EECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEE-EECCCCCCcccccccChhhEeeeEEEEEe
Confidence 4677899999999998 6666668888877654 4555554 66777776 6788 9999995
No 176
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.34 E-value=6.1e-13 Score=166.36 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=103.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhh
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSA 264 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 264 (1436)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 568999999999999999999999999998765 232 12345566531 12222210
Q ss_pred hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHH
Q 038815 265 RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344 (1436)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkR 344 (1436)
.. +. +. +. +...|+....+ ..+..|||||+||
T Consensus 330 ---~~-----------------g~----~~------------------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 ---SW-----------------GM----DF------------------EE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp ---TT-----------------SC----CH------------------HH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred ---Hc-----------------CC----CH------------------HH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 00 00 00 01 12345544333 3456799999999
Q ss_pred Hhhhhhh-----hhheeCCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hhHHhhcCeEE
Q 038815 345 VTTGPAL-----ALFMDEISNGLDSS-----TTFQIVNSIRQNIHILNGTAVISLLQPA----------PETYDLFDDII 404 (1436)
Q Consensus 345 vsia~a~-----vlllDEptsgLDs~-----t~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~lfD~vi 404 (1436)
+.++++. ++++| ||+|||.. .+..+.+.++.+.+ .+.|++++ .|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv-sh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT-NTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE-EECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE-ECcccccCcccccCcccceeeeEEE
Confidence 9997654 69999 99999999 89899998888754 45566654 4444 66778999999
Q ss_pred EecCCe
Q 038815 405 LLSDGL 410 (1436)
Q Consensus 405 lL~~G~ 410 (1436)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.33 E-value=5.4e-14 Score=154.41 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=95.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC--CCCCHHHHHHhhhh
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI--GEMTVRETLAFSAR 265 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 265 (1436)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998643 378999998766 66899998765321
Q ss_pred hccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHH---
Q 038815 266 CQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQK--- 342 (1436)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqr--- 342 (1436)
.. ... + .......++.+++.+..+. ....+|+|||
T Consensus 61 ~~---------~~~-------------~---------------~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---------DAF-------------D---------------LALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp SG---------GGB-------------C---------------HHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred Ch---------hhh-------------h---------------HHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 00 000 0 0112345566666654332 2446899864
Q ss_pred -HHHhhhhhh-----hhheeCCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 038815 343 -RRVTTGPAL-----ALFMDEISNG-------LDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391 (1436)
Q Consensus 343 -kRvsia~a~-----vlllDEptsg-------LDs~t~~~i~~~l~~~~~~~~~t~ii~~~q 391 (1436)
||++++++. ++++||||++ ||+....++.+.+++.....+.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677776654 4888999999 999999999998877544345555544443
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.33 E-value=5.7e-14 Score=153.61 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=91.3
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCeeEEEEEEcCeec-c-cccccceEEEeccCCCCCCCCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSITISGYLK-K-QETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~---~~~~~G~i~i~g~~~-~-~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+|++ +.+.+|+.++|+|+||||||||++.|+|... ..+..|.+...+... . ...+....|+..+. .+...
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 5666 8899999999999999999999999999651 012334433221100 0 00000111211100 00000
Q ss_pred ---HHHHHHHhhh-hcC----------CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHH
Q 038815 969 ---VYESLLYSAW-LRL----------PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL 1033 (1436)
Q Consensus 969 ---v~E~l~f~a~-lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR-l~ia~~L 1033 (1436)
.+..+..... .+. ...... ....+.+.++..++..+ .+++. ...+|+||||| +.+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHH
Confidence 1111111110 000 001111 12234455566665432 11211 24689999999 8999999
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1070 (1436)
+.+|.++++|||||++|......+++.|.++.+.|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998766654
No 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.32 E-value=2.3e-14 Score=154.60 Aligned_cols=139 Identities=20% Similarity=0.207 Sum_probs=89.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
|++++|+||||||||||+++|+|... .+| |.++|+...+ ...++.+||++|+. .... +++ +++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccC
Confidence 78999999999999999999999653 246 7777765532 24567899999975 1111 111 1111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCCcceecC--CCCCCCHHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1057 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl-~ia~---~L~~~p~il~lDE--PTsgLD~~~~~~i 1057 (1436)
+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 69 --~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 69 --P-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp --C-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred --C-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 0 00011234433 236999999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHHcCCEEEE---E-ecCCC
Q 038815 1058 MRTVKNTVETGRTVVC---T-IHQPS 1079 (1436)
Q Consensus 1058 ~~~l~~~~~~g~tvi~---t-~Hqps 1079 (1436)
.+++ +...++|+ + +|+++
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP 150 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC
T ss_pred HHHH----hCCCcEEEEEeecCCCCc
Confidence 5444 44445553 2 38865
No 180
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.32 E-value=8.6e-14 Score=164.67 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=104.5
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCC-CCcccE-EEEcCccCCCCCccceEEEEcCCCCCCCCC
Q 038815 180 ILKDV-SGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSS-LKVSGR-VTYNGHNMDEFEPQRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 180 iL~~v-s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 254 (1436)
.|+++ +|.+++|++++|+||||||||||++.|+|.. +|+ ....|+ |.+++.+. + ..+.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999987 443 011368 88888753 1 23456778887765554
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
++.||+.+.... . + +. . ...++.+ . ..+
T Consensus 195 ~v~~ni~~~~~~-------~-----~--------------~~-----------~----~~~l~~~------~-----~~~ 222 (349)
T 1pzn_A 195 EVLKHIYVARAF-------N-----S--------------NH-----------Q----MLLVQQA------E-----DKI 222 (349)
T ss_dssp HHGGGEEEEECC-------S-----H--------------HH-----------H----HHHHHHH------H-----HHH
T ss_pred HHhhCEEEEecC-------C-----h--------------HH-----------H----HHHHHHH------H-----HHH
Confidence 777776653210 0 0 00 0 0001100 0 122
Q ss_pred CCCCHHHHHHHhhhhhhhhheeCCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 335 RGISGGQKRRVTTGPALALFMDEISNGLDSST------------TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~vlllDEptsgLDs~t------------~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+|||| .++.++++||||++||+.. ..++++.|+.+++..+.|+| .+.|...+....+++
T Consensus 223 ~~lS~G~------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvi-i~~h~~~~~~~~~~~ 295 (349)
T 1pzn_A 223 KELLNTD------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQARPDAFFGD 295 (349)
T ss_dssp HHSSSSS------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEE-EEEECC---------
T ss_pred HHhcccc------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEE-EEcccccccccccCC
Confidence 3589998 5688999999999999852 35667777777765454554 466666555556667
Q ss_pred EEEecCCeEEEecCh
Q 038815 403 IILLSDGLIVYLGPR 417 (1436)
Q Consensus 403 vilL~~G~iv~~G~~ 417 (1436)
......|+++.+++.
T Consensus 296 ~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 296 PTRPIGGHILAHSAT 310 (349)
T ss_dssp ------CCCCCTTCS
T ss_pred ccccCCcceEeecCc
Confidence 777788887766543
No 181
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.31 E-value=5.5e-14 Score=178.09 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=106.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCcccEEEEcCccCCC------CCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLDS-SLKVSGRVTYNGHNMDE------FEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~~-~~~~~G~I~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 9999999988521 12346789999999999999999999876432
Q ss_pred ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHh
Q 038815 267 QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346 (1436)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvs 346 (1436)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 21100 0011 01111
Q ss_pred h-----hhhhhhheeCC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----hHHhh--------cCeE
Q 038815 347 T-----GPALALFMDEI------SNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP----ETYDL--------FDDI 403 (1436)
Q Consensus 347 i-----a~a~vlllDEp------tsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~l--------fD~v 403 (1436)
+ ..|.++++||| |+|||+....++.+.++++....++.+++.++|+.+ ++.++ ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 1 24678999999 999999999999999998755444566666666654 22222 2457
Q ss_pred EEecCCeEEEecChHHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~ 422 (1436)
+++.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887654443
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=1.9e-14 Score=155.18 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHhhhhhccC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 269 (1436)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 79 999987764432 246789999874 111 1111 00000
Q ss_pred CCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhh-h
Q 038815 270 GSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT-G 348 (1436)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsi-a 348 (1436)
.++ +...+..+|. +...+|||||+++.. .
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 000 0000123332 334699999988833 3
Q ss_pred h--------hhhhheeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhhHHhhcCeEEEecCCeEEEec
Q 038815 349 P--------ALALFMDE--ISNGLDSSTTFQIVNSIRQNIHILNGTAVI---SLLQPAPETYDLFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 349 ~--------a~vlllDE--ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~lfD~vilL~~G~iv~~G 415 (1436)
+ +.++++|| |+..+|......+.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 3 44899999 898899876555544443 2 345553 3336543 3567888888899988653
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=9.5e-14 Score=167.09 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=88.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+++|+|+.| +|+|+||||||||+++|+|........|.+.+++. .....+.++|+.|++...+.+||.|
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~---~t~~~~~i~~v~q~~~~~~~Ltv~D 94 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK---KTVQVEQSKVLIKEGGVQLLLTIVD 94 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCc---cceeeeeEEEEEecCCcccceeeee
Confidence 45899999998 99999999999999999996531111222222221 1112356899999988888899999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC---cceecCCC-C
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPT-S 1047 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~---il~lDEPT-s 1047 (1436)
++.+..... .... ...+.+.+ + ..++.+.++|+.||++++.+|+ +|++|||| +
T Consensus 95 t~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 95 TPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp CC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred chhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 987754321 0010 01111111 0 1356677889999999999999 89999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1048 GLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
|||+... +.++.+.. +.+||+++|.-
T Consensus 152 ~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp SCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9998773 34445543 77888888753
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.29 E-value=1.2e-12 Score=170.45 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHhhh----hhhhhheeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-ecC
Q 038815 335 RGISGGQKRRVTTG----PALALFMDEISNGLDSSTTFQIV-NSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSD 408 (1436)
Q Consensus 335 rgLSGGqrkRvsia----~a~vlllDEptsgLDs~t~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil-L~~ 408 (1436)
..+|+|++|++.|+ .+.++||||||+|||+.....+. ..++.+.+..+.++++ ++|.. ++.+++|+.-- +.+
T Consensus 734 stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~-vTH~~-el~~l~~~~~~~v~n 811 (918)
T 3thx_B 734 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF-VTHYP-PVCELEKNYSHQVGN 811 (918)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHTTTTEEE
T ss_pred HHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE-EeCcH-HHHHHHhhcccceEE
Confidence 35899999999995 56689999999999999999987 5666665434555554 56664 45566665421 334
Q ss_pred CeEEE
Q 038815 409 GLIVY 413 (1436)
Q Consensus 409 G~iv~ 413 (1436)
+++.+
T Consensus 812 ~~~~~ 816 (918)
T 3thx_B 812 YHMGF 816 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 185
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.29 E-value=3e-13 Score=171.35 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc------cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK------QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+||+|||||||||||++|+|...+ ..+|.|.++|.+.. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998542 14799999997631 13467889999999999999999999976532210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC------CCCCCHHHHH
Q 038815 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1055 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP------TsgLD~~~~~ 1055 (1436)
. .. .++| ++++.++++...+|+++++||| |+|||+....
T Consensus 127 ~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0111 1222222333458999999999 9999999999
Q ss_pred HHHHHHHHHHHc--CCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVET--GRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~~--g~tvi~t~Hqps 1079 (1436)
.+.+.++++.+. +.++++++|+..
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 667888899865
No 186
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.29 E-value=2.1e-13 Score=180.44 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEE-EEcCC
Q 038815 176 KHLTILKDVSGIIRP-------GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA-YISQH 247 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~-------Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~ 247 (1436)
+...+++|+++.+++ |++++|+||||||||||||++ |.+.+ ...+| ||||+
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~ 825 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAE 825 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESS
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccC
Confidence 345799999999987 999999999999999999999 98642 11234 89997
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.. .+||.|++.. + . |+.+..+
T Consensus 826 ~~---~l~v~d~I~~--r---i--------------------------------------------------g~~d~~~- 846 (1022)
T 2o8b_B 826 VC---RLTPIDRVFT--R---L--------------------------------------------------GASDRIM- 846 (1022)
T ss_dssp EE---EECCCSBEEE--E---C--------------------------------------------------C-------
T ss_pred cC---CCCHHHHHHH--H---c--------------------------------------------------CCHHHHh-
Confidence 52 4566555421 0 0 0000000
Q ss_pred cccCcccCCCCHHHHHHHhhhh-----hhhhheeCCCCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 328 LVGDEMIRGISGGQKRRVTTGP-----ALALFMDEISNGLDSSTT-FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~-----a~vlllDEptsgLDs~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
.....+|+|+++ +++++ +.+++||||++|+|+... ..+...++.+.+..+. +++.++|..+.+..++|
T Consensus 847 ----~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~-~vl~~TH~~el~~~~~d 920 (1022)
T 2o8b_B 847 ----SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKC-RTLFSTHYHSLVEDYSQ 920 (1022)
T ss_dssp -------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCC-EEEEECCCHHHHHHTSS
T ss_pred ----hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHhCC
Confidence 011235666654 66644 457999999999999885 4467777777653344 45557888888888999
Q ss_pred eEEEecCCeEE--EecChH
Q 038815 402 DIILLSDGLIV--YLGPRE 418 (1436)
Q Consensus 402 ~vilL~~G~iv--~~G~~~ 418 (1436)
++.++ +|++. +.|+.+
T Consensus 921 ~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 921 NVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp CSSEE-EEEEEEC------
T ss_pred cceee-cCeEEEEEecCcc
Confidence 99887 58887 455543
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.27 E-value=4.5e-13 Score=148.67 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=96.3
Q ss_pred EEeeceEe-eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccccc---ceEEEeccCCCCCCCCC
Q 038815 893 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT---RISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 893 ~iL~~vs~-~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~---~~~gyv~Q~d~~~~~lT 968 (1436)
..|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+....... +..++..|..... .++
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 35788885 899999999999999999999999997432 1123343333211100000 0011111100000 000
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceecCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1046 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lDEPT 1046 (1436)
.++.....++ ...+ ....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ------------------------~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------------------IIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------------------EEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------------------EEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000000000 0000 12359999988888887778999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCCC-------HHHHHHhhh
Q 038815 1047 SGL--DARAAAIVMRTVKNTVE-TGRTVVCTIHQPS-------IDIFESFDE 1088 (1436)
Q Consensus 1047 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps-------~~if~~FD~ 1088 (1436)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+-+..|.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~ 185 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADG 185 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeE
Confidence 888 99999999999999875 4899999999973 235555565
No 188
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.24 E-value=1.9e-13 Score=150.88 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=85.5
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCH----HHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV----YESLLY 975 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv----~E~l~f 975 (1436)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|+...++.+|+ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999976422367899998876432 234557888886544333333 222211
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1055 (1436)
... . .+.| +++ ..+++..+++++|| ||+.++.
T Consensus 90 ~~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FGN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TTE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hhc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 100 0 0111 111 34556668999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
.+.+.+. .+.||++++|++.
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 4889999999864
No 189
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=3.5e-13 Score=161.29 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred eeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 895 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 895 L~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
|++||+.+++|++ +||+||||||||||+|+|+|..- .|.-. ... .....++.++|++|++.+.+.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 12111 110 112234578999999888888999999
Q ss_pred HHHhhhhcCCCCCCHH--------HHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHH
Q 038815 973 LLYSAWLRLPPEVDSE--------TRKMFIEEIMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 1033 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~--------~~~~~v~~~l~~l-~L~----~~~~~~----vg--~~~~~~lSgGqrkRl~ia~~L 1033 (1436)
+.|+.. .+.. ......++.++.. ++. ...|+. +. .+...+++..+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876432 1111 1122344555544 443 122322 11 12224677777 7899999
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~t~Hq 1077 (1436)
..+++|+++||||..|.......+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899999987 77779888887753
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.23 E-value=6.5e-13 Score=147.42 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred ceeeeceEE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 178 LTILKDVSG-IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~-~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.|.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 456788885 89999999999999999999999999887543 56666544321 11
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
.+........ +. ..+ +.... ... . .+...+.++ . .. ....
T Consensus 64 ~~~~~~~~~~-~~--~~~---~~~~~-~~~-~-----------------------~~~~~~~~~-~----~~----~~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NW--DFE---EYIEK-KLI-I-----------------------IDALMKEKE-D----QW----SLVN 103 (235)
T ss_dssp HHHHHHHHHT-TC--CCG---GGBTT-TEE-E-----------------------EECCC-----C----TT----BCSS
T ss_pred HHHHHHHHHh-cc--hHH---HHhhC-CEE-E-----------------------EeccccccC-c----ee----eecC
Confidence 1111100000 00 000 00000 000 0 000000001 0 00 0123
Q ss_pred CCHHHHHHHhh-----hhhh--hhheeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hhHHhh
Q 038815 337 ISGGQKRRVTT-----GPAL--ALFMDEISNGL--DSSTTFQIVNSIRQNIHILNGTAVISLLQPA--------PETYDL 399 (1436)
Q Consensus 337 LSGGqrkRvsi-----a~a~--vlllDEptsgL--Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~l 399 (1436)
.|.+|.++... ..+. ++++||||+++ |+....++++.|+++++..+ .+++.++|.. +.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchhee
Confidence 58888876655 3677 99999999888 99889999999999876544 5555567776 568899
Q ss_pred cCeEEEecCC
Q 038815 400 FDDIILLSDG 409 (1436)
Q Consensus 400 fD~vilL~~G 409 (1436)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
No 191
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.23 E-value=1e-12 Score=169.97 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=95.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
+..+++|+++. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| +++.+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCH
Confidence 35689999999 999999999999999999999999964211 012 11111 1123445444 4555566
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
.|++..+. ..
T Consensus 660 ~d~l~~~~----------------------------------------------------------------------st 669 (800)
T 1wb9_A 660 ADDLASGR----------------------------------------------------------------------ST 669 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhh----------------------------------------------------------------------hh
Confidence 66554311 12
Q ss_pred CCHHHHHHHhh----hhhhhhheeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTT----GPALALFMDEISNGLDSSTTFQI-VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsi----a~a~vlllDEptsgLDs~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
+|+|+++...+ ..+.+++||||++|+|+.....+ ...++.+.+..+.++++ ++|.. +..+++|++..+.+|++
T Consensus 670 f~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~-~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 670 FMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE-EeCCH-HHHHHhhhhhceEEEEE
Confidence 34455444333 35678999999999998777665 56666665433455555 56665 44568898877888887
Q ss_pred EEec
Q 038815 412 VYLG 415 (1436)
Q Consensus 412 v~~G 415 (1436)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 192
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.22 E-value=1.6e-12 Score=147.55 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=44.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
++|+|+| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i 64 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI 64 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc
Confidence 4899999 8999999999999999999999999998752 179999999765
No 193
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.22 E-value=2.3e-13 Score=142.38 Aligned_cols=80 Identities=19% Similarity=0.081 Sum_probs=67.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
.++.+++++|+.+++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+|
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 3456899999999999999999999999999999999999 76 899999998874221111 2789988778 899
Q ss_pred HHHHHHh
Q 038815 256 VRETLAF 262 (1436)
Q Consensus 256 V~E~l~f 262 (1436)
|.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
No 194
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.21 E-value=2.1e-12 Score=166.09 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=86.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-SSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
+..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCC
Confidence 35789999998 99999999999999999999999753 33 45431 1 01234666665 445555
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.|++.+
T Consensus 628 ~~d~l~~------------------------------------------------------------------------- 634 (765)
T 1ewq_A 628 ASDDLAG------------------------------------------------------------------------- 634 (765)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 5555432
Q ss_pred CCCHHHHHHHhhhh-------hhhhheeCC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 336 GISGGQKRRVTTGP-------ALALFMDEI---SNGLDSSTT-FQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 336 gLSGGqrkRvsia~-------a~vlllDEp---tsgLDs~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++|+|+++++.+++ +.+++|||| |++||..+. ..+++.|++ .+.++++ ++|..+. .+++
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~~l-~~~~ 704 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYFEL-TALG 704 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCHHH-HTCC
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCHHH-HHhh
Confidence 46778888877754 447999999 999998875 578888765 2555555 5666443 3444
No 195
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.21 E-value=9.3e-12 Score=128.50 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=61.8
Q ss_pred CcccCCCCHHHHHHHhhh------h-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 331 DEMIRGISGGQKRRVTTG------P-----ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia------~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
+..+..|||||||||+|| + |.+++|||||+|||+.+...+.+.++++.+ .+.|+++ ++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEE-EEChH-HHHHh
Confidence 456778999999999875 2 457999999999999999999999998654 3455554 56665 67889
Q ss_pred cCeEEEe--cCCe
Q 038815 400 FDDIILL--SDGL 410 (1436)
Q Consensus 400 fD~vilL--~~G~ 410 (1436)
+|++++| .+|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 9999999 4564
No 196
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.21 E-value=1e-13 Score=149.61 Aligned_cols=154 Identities=13% Similarity=0.017 Sum_probs=94.3
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-cccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+..+|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367999999999999999999999999732 47899998643211 11234577777543 456888888765432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHH
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~ 1059 (1436)
....... ..++.+++..++....+. +.+ +..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000111111111111100 111 2459999999999999999999887 68877777777
Q ss_pred HHHHHHHcCCEEEEEec
Q 038815 1060 TVKNTVETGRTVVCTIH 1076 (1436)
Q Consensus 1060 ~l~~~~~~g~tvi~t~H 1076 (1436)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77655333334444443
No 197
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.18 E-value=4.5e-11 Score=145.80 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHhhhh---------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 335 RGISGGQKRRVTTGP---------ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 335 rgLSGGqrkRvsia~---------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
..||||||||++||+ +.+++|||||++||+.....+.+.|++... .++.++.++|. .+..+.+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999954 447999999999999999999999988632 23444546666 567789999999
Q ss_pred ec
Q 038815 406 LS 407 (1436)
Q Consensus 406 L~ 407 (1436)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.18 E-value=1.1e-12 Score=144.95 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=97.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH----HHHHH
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV----RETLA 261 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 261 (1436)
-..++|++++|+||||||||||+++|+|..+|+ ..+|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999998775432 23457899998766666665 44443
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
+.....+. .+ ..++.++
T Consensus 89 ~~~~~yg~----------~~----------------------------~~v~~~l------------------------- 105 (219)
T 1s96_A 89 VFGNYYGT----------SR----------------------------EAIEQVL------------------------- 105 (219)
T ss_dssp ETTEEEEE----------EH----------------------------HHHHHHH-------------------------
T ss_pred HHhccCCC----------CH----------------------------HHHHHHH-------------------------
Confidence 32111100 00 0011111
Q ss_pred HHHHhhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 342 KRRVTTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 342 rkRvsia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
....+++|| ||+.++.++.+.+. .+.+|+.+.|...++.+ ++ +.+| .++.+++.
T Consensus 106 ------~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 106 ------ATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp ------TTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred ------hcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence 113689999 99999999988775 34566667777766655 43 7778 67777776
Q ss_pred HHH
Q 038815 422 DFF 424 (1436)
Q Consensus 422 ~~F 424 (1436)
..+
T Consensus 160 ~rl 162 (219)
T 1s96_A 160 KRM 162 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 199
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.18 E-value=9.5e-13 Score=152.41 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---------QRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999887 8999999998754321 23588999999889999999999
Q ss_pred Hhh
Q 038815 261 AFS 263 (1436)
Q Consensus 261 ~f~ 263 (1436)
.++
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.18 E-value=8.7e-12 Score=148.71 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=90.1
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCee-EEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 567765 79999999999999999999999999643 22 588876664432 22344567777741
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+|+. ...+ +.+|+.+|..+|++|++|||| |..
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.. .+++. +..|.+|++|+|..+ +.+.+|+
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~r 252 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHR 252 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHH
Confidence 644 34443 456999999999965 5666776
No 201
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.15 E-value=2.4e-14 Score=167.59 Aligned_cols=156 Identities=14% Similarity=0.112 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC------CeeEEEEEEcCeecccc------------------cccceEEEe---c
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGSITISGYLKKQE------------------TFTRISGYC---E 958 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 958 (1436)
++++|+|+|||||||||+.|.|...+ ....|+|.++|.+.... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986521 12468888888764321 233446666 5
Q ss_pred cCCCCCCCCCHHHHHHHhh--hh-cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 038815 959 QNDIHSPLVTVYESLLYSA--WL-RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1035 (1436)
Q Consensus 959 Q~d~~~~~lTv~E~l~f~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~ 1035 (1436)
|+....+..+|.|+..++. .+ +.-...+...+...++.+++.+++.+..+.. .++|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 6655555677777664321 00 0000000000011122233334444444433 2589999999999999999
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
+|+++ ||| ..+.+.|+++. .+.||++++|.|.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 77888888874 5889999999864
No 202
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.15 E-value=3.8e-11 Score=127.17 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~----~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+++..|+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i 136 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKI 136 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEE
Confidence 35799999999999999974 4699999999999999999999999999865 57899999985 455666653
No 203
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.14 E-value=2.3e-11 Score=139.66 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=95.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
-+++|++++|+||||||||||++.+++... .|++ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 478999999999999999999999998653 4554 2344321 1345778876552 1 1111 010
Q ss_pred ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHh
Q 038815 267 QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346 (1436)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvs 346 (1436)
...+.. .+ ....+.+++.+++.+..+ ..+..+|+||++++.
T Consensus 88 ~~~g~~-------------------~~---------------~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 88 HALGAH-------------------LS---------------AEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGLK 128 (279)
T ss_dssp HHHHTT-------------------SC---------------HHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHHH
T ss_pred HHHHhh-------------------cC---------------hhhhhhccCceEEeecCC-----CCcccCCHHHHHHHH
Confidence 000000 00 011344567777765443 345679999999885
Q ss_pred h--hhhhhhheeCCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 347 T--GPALALFMDEISN--GLDSSTT---FQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 347 i--a~a~vlllDEpts--gLDs~t~---~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
- ..+.++++||||+ ++|.... .++++.|+++++..+.|+|+ ++|....
T Consensus 129 ~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~~ 183 (279)
T 1nlf_A 129 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASKG 183 (279)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC---
T ss_pred HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCCc
Confidence 4 3567899999999 9997443 78888998887655555555 5665543
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.12 E-value=1.2e-10 Score=128.20 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=86.8
Q ss_pred EeeceE-eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++++. ++. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~-----------------~~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDT-----------------EGG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEES-----------------SCC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEEC-----------------CCC----CCH-HH
Confidence 466666 5899999999999999999999999998 221 12333332 111 111 11
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CCcceecCCCCCC
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1049 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--qrkRl~ia~~L~~~-p~il~lDEPTsgL 1049 (1436)
+.- ..+. ...+. +++++.+.+ ...+++ +++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 123333 46788899999986 9999999999999
Q ss_pred CHH--------HHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1050 DAR--------AAAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1050 D~~--------~~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
|.. ....+++.|++++++ |.|||+++|...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 973 335567778888764 999999999764
No 205
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.12 E-value=1.3e-12 Score=147.15 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---CCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh-
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL- 979 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~La---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l- 979 (1436)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.++++.|+....+..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8654 44577777664321 11223345566777777888999998764210
Q ss_pred -----cCCCCCCHHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCCc
Q 038815 980 -----RLPPEVDSETRKMFIEEIMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1039 (1436)
Q Consensus 980 -----r~~~~~~~~~~~~~v~~~l~~--l~------------L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L-~~~p~i 1039 (1436)
... ..+... ..++.+.+. ++ +..+.+.. +..+|| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 011111 112222211 11 11112222 245888 65 677 899999
Q ss_pred ceec----CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1040 IFMD----EPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1040 l~lD----EPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
++|| |||+|||..+...+.+.++++.+
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999 99999999999999888887644
No 206
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.11 E-value=4.4e-13 Score=160.02 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=88.3
Q ss_pred eeceEeeEeC--CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeE----EEEEEcC----eecc--cccccceEEEeccCCC
Q 038815 895 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GSITISG----YLKK--QETFTRISGYCEQNDI 962 (1436)
Q Consensus 895 L~~vs~~i~~--Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~----G~i~i~g----~~~~--~~~~~~~~gyv~Q~d~ 962 (1436)
.+.|+..|++ |+.++|+||||||||||+++|+|.... .+ |.|.+++ .+.. ...+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578999999 999999999999999999999997652 34 5554431 1100 0001 11222222110
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCcce
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIF 1041 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-~~p~il~ 1041 (1436)
.+ ..|+.||+.+. + .+..+.. ...+|+|+++|..+++++. .+|++++
T Consensus 235 ~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 01111111000 0 0001111 1235677788888888775 5999999
Q ss_pred ecC---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1042 MDE---PT------SGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1042 lDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
||| |+ +++|...+..+.+.|+++.+ .|.+||+++|.
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 999 65 68999999999999998765 48899998874
No 207
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.09 E-value=2.1e-11 Score=143.15 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=85.7
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc-CeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS-GYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
+++++.. .+|++++|+||||||||||+|+|+|.... ..+|+|.++ |.... .+..+.++|++|+..++++.||+|.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 3444443 47999999999999999999999997641 346888887 65432 3445678999999888888899883
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1033 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L 1033 (1436)
. + ...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 12445556667888999999988887763 5799 999999999864
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.08 E-value=1.9e-11 Score=145.28 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEc-CCCCC--CCCCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYIS-QHDNH--IGEMT 255 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 255 (1436)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999987 999999985311111 346789999 76543 37789
Q ss_pred HHHHHHhhh
Q 038815 256 VRETLAFSA 264 (1436)
Q Consensus 256 V~E~l~f~~ 264 (1436)
++++|..+.
T Consensus 241 ~~~~i~~~l 249 (361)
T 2gza_A 241 AATLLRSCL 249 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987653
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.08 E-value=4e-11 Score=142.55 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=91.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec-ccccccceEEEec-cCCCCCCCCCHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK-KQETFTRISGYCE-QNDIHSPLVTVYE 971 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~-~~~~~~~~~gyv~-Q~d~~~~~lTv~E 971 (1436)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999997653 469999998532 1122456778887 54321
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222345566666667899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+.+.|+.+.....|++.++|..+ .-+..|+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~R 295 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFER 295 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHH
Confidence 3455666666444458899999976 4566776
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.06 E-value=6.5e-13 Score=143.15 Aligned_cols=167 Identities=11% Similarity=0.047 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVG 270 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 270 (1436)
|++++|+||||||||||+++|++. . +|.+.++|.++.+. ...++++|.+...+.+|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999982 2 78999998765332 22456677654455668888887754321100
Q ss_pred CccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC--CHHHHHHHhh-
Q 038815 271 SRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTT- 347 (1436)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL--SGGqrkRvsi- 347 (1436)
.....+ .... ... . . +..+.+ |+|+++|+.+
T Consensus 73 ~~~~il---------d~~~---~~~------------~---~-------------------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 73 QNDVVL---------DYIA---FPD------------E---A-------------------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp TCEEEE---------ESCC---CHH------------H---H-------------------HHHHHHHHHHCSSEEEEEE
T ss_pred CCcEEE---------eecc---CHH------------H---H-------------------HHHHHHHHhcccCCCeEEE
Confidence 000000 0000 000 0 0 001123 7787777655
Q ss_pred ----------hhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhhHHhhcCeEEEecCCeEEEecC
Q 038815 348 ----------GPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP-APETYDLFDDIILLSDGLIVYLGP 416 (1436)
Q Consensus 348 ----------a~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~lfD~vilL~~G~iv~~G~ 416 (1436)
.|+....+|+ +||+..... .+.++.+.. .+.++ +..+|. .+++.+.+|+|+ ++|+++..|+
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~i-i~tsh~~~~~~e~~~~~i~--~~g~~~~~~~ 178 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYF-YNTSHLQPTNLNDIVKNLK--TNPRFIFCMA 178 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSE-EECSSSCGGGHHHHHHHHH--HCGGGSCC--
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEE-EeCCCCChhhHHHHHHHHh--hCCcEEEeec
Confidence 2333356673 899987777 777766532 23444 445565 778999999998 9999999998
Q ss_pred hHHH
Q 038815 417 RELV 420 (1436)
Q Consensus 417 ~~~~ 420 (1436)
++-+
T Consensus 179 ~~~~ 182 (189)
T 2bdt_A 179 GDPL 182 (189)
T ss_dssp ----
T ss_pred CCch
Confidence 7654
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=2.8e-11 Score=145.62 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=52.4
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
.+++.+++.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~ 84 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEG 84 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC----
T ss_pred EecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecC
Confidence 44566666678999999998 99999999999999999999764311 2222222111 11124578999998
Q ss_pred CCCCCCCHHHHHHhhh
Q 038815 249 NHIGEMTVRETLAFSA 264 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~ 264 (1436)
..++.+||.||+.++.
T Consensus 85 ~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 85 GVQLLLTIVDTPGFGD 100 (418)
T ss_dssp --CEEEEEEECC----
T ss_pred Ccccceeeeechhhhh
Confidence 8888999999987753
No 212
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=1.3e-11 Score=148.40 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=101.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
+++++.+++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.++.-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 79999999999999999999999999999999642 23343321 22344666666541 11122221100
Q ss_pred hhhhcCCCCCCHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 976 SAWLRLPPEVDSETRK--MFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
...............+ +.++.++..+++. ......+|+|++||+.+|++|+.+|.||++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111000 0111122222332 111357999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1054 AAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1054 ~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+ ..++.+++.. +.|.+++.++..-...+-++|+.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 6 4444454443 45778777766556667777776
No 213
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.04 E-value=1.3e-10 Score=144.90 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=63.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~l-SgGqrkRl~ia~~L~~~p--~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ |.||||++|+|. +....|+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~ 466 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHH 466 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCE
Confidence 467 999999999999999999 99999999999999999999999999987 899999999974 5566787
No 214
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.04 E-value=2.3e-12 Score=136.48 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeecc------ccccc-ceEE----EeccCCCCCCCCCHHHHH
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLKK------QETFT-RISG----YCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~d~~~~~lTv~E~l 973 (1436)
++++|+|+||||||||++.|+|.... +...|.|.++|.+.. .+.++ +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999996432 233699999997622 12344 3466 788876544 111
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcc-------eecCC
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1045 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il-------~lDEP 1045 (1436)
. ..+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 111 11134555555 43 24777753 59999999999999999999874 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcCC
Q 038815 1046 TSG---LDARAAAIVMRTVKNTVETGR 1069 (1436)
Q Consensus 1046 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1069 (1436)
..+ +|......+.+.+.+....|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766555543
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.02 E-value=9.4e-11 Score=121.42 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=37.8
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCCH
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT-VVCTIHQPSI 1080 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~t~Hqps~ 1080 (1436)
+.+|++|++|||++ +|...+..+.+.+..+.++|++ +|+|+|.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 45799999999998 5555588899999988877888 8999996543
No 216
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.01 E-value=2.1e-13 Score=162.76 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=40.9
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----cEEEEc
Q 038815 180 ILKDVSGIIRP--GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVS----GRVTYN 228 (1436)
Q Consensus 180 iL~~vs~~i~~--Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~----G~I~~~ 228 (1436)
+.+.|+..|++ |+.++|+||||||||||+++|+|.++++ + |+|.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 777654
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.01 E-value=4.8e-11 Score=140.17 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEc-CccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-SSLKVSGRVTYN-GHNMDEFEPQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5566654 4899999999999999999999999998 76 9999987 765432 23457899999988899999988
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
+ +. .+ +.+.+ .....+++++.+|+.+..|. ...++|
T Consensus 281 ~---~l--~~----------l~~~e------------------------~~~~~~e~l~~~gl~~f~~~-----~~~~lS 316 (358)
T 2rcn_A 281 F---GL--WH----------LEPEQ------------------------ITQGFVEFHDYLGHCKYRDC-----KHDADP 316 (358)
T ss_dssp C---CC--CC----------CCHHH------------------------HHHTSGGGGGGTTCSSSTTC-----CSSSCT
T ss_pred h---hh--cC----------CCHHH------------------------HHHHHHHHHHHcCCchhcCC-----CcccCC
Confidence 3 21 10 00000 11123345677788665554 345799
Q ss_pred HHHHHHHhhhhh
Q 038815 339 GGQKRRVTTGPA 350 (1436)
Q Consensus 339 GGqrkRvsia~a 350 (1436)
||+||++|+.+
T Consensus 317 -G~~~r~ala~g 327 (358)
T 2rcn_A 317 -GCAIREAVENG 327 (358)
T ss_dssp -TCHHHHHHHHT
T ss_pred -HHHHHHHHHhc
Confidence 99999999875
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.00 E-value=4e-11 Score=145.09 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=99.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------cc--ccceEEEeccCCCCCCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ET--FTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~d~~~~~ 966 (1436)
+++|+.+++|++++|+|+||||||||++.|+|... ...|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 67899999999999999999999999999999653 225889997654321 11 24568999999888888
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCC-cceecC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1044 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-~~p~-il~lDE 1044 (1436)
.||++++.+...-. .+. -+++..|+.+.. ..+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998763211 000 011111221111 112223457788888664 4564 565555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEec
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIH 1076 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H 1076 (1436)
||+|.|+. +.++.+.+ .|.|.|+++|
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886554 23444433 3889999999
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.99 E-value=2.1e-11 Score=127.46 Aligned_cols=79 Identities=20% Similarity=0.067 Sum_probs=64.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.++++||+.+++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4699999997653211111 2789987777 899999
Q ss_pred HHHHh
Q 038815 972 SLLYS 976 (1436)
Q Consensus 972 ~l~f~ 976 (1436)
++.+.
T Consensus 94 ~l~~~ 98 (158)
T 1htw_A 94 ELEFM 98 (158)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 99653
No 220
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.99 E-value=1.4e-11 Score=138.79 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALA---GKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~La---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... .....+.++.|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 998776 8999888765321 1123345567777788889999999874321
Q ss_pred -ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--ccc-------cccccCcccCC
Q 038815 267 -QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD--ICA-------DTLVGDEMIRG 336 (1436)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~-------~t~vg~~~~rg 336 (1436)
.+.+-..+ + .+. ..+ ..+.+.+....+ ... -..+.++.+..
T Consensus 102 ~~~~~~il~------------g-~~~-~~~---------------~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD------------G-FPR-TLG---------------QAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE------------S-CCC-SHH---------------HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE------------C-CCC-CHH---------------HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0 000 000 000000000100 000 00111233456
Q ss_pred CCHHHHHHHh-hhhhhhhhee----CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 337 ISGGQKRRVT-TGPALALFMD----EISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 337 LSGGqrkRvs-ia~a~vlllD----EptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
+|| |-|.. +.+|.+++|| |||+|||..+...+.+.++.+..
T Consensus 153 lSg--rv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG--RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT--EEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC--CccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 888 22222 4677789999 99999999999999999987654
No 221
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.98 E-value=4.7e-11 Score=141.03 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=36.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+|+++ ..++|++++|+|||||||||||++|+|.+++. ..|.|...+.+
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~ 161 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDP 161 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESS
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCc
Confidence 44444 56899999999999999999999999998763 14666544433
No 222
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.97 E-value=8.5e-13 Score=142.27 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE 984 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~ 984 (1436)
|++++|+||||||||||+++|++.. .|.+.++|...... ...|+++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 6899999999999999999999732 46788888543211 2346677765444456788887664432110
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCCcceecCCCCCCCHHH
Q 038815 985 VDSETRKMFIEEIMELVELNPLRQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 985 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~---~~~~~l--SgGqrkRl~ia~------~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
-+...+.+...+. ...+.+ |+|+++++.++. +++.+|+...+|+ |||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011111000 001234 888888888888 9999999999994 899988
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecC-CCHHHHHHhhhh
Q 038815 1054 AAIVMRTVKNTVETGRTVVCTIHQ-PSIDIFESFDEA 1089 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~g~tvi~t~Hq-ps~~if~~FD~~ 1089 (1436)
... ++.++.+.+.+.+||.++|+ ++ ++-+..|+.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i 167 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNL 167 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHH
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHH
Confidence 888 88888776567899999998 53 455556663
No 223
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.97 E-value=2.7e-11 Score=139.30 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=84.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhh----h
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA----W 978 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a----~ 978 (1436)
+++.++||.|+||||||||.+.|++.... .| . . ++.+.+|+|++.+++. ++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46789999999999999999999986431 11 0 0 3445666999988864 8889987752 1
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCCc--c--cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCCcceecCCCCCC
Q 038815 979 LR---LPPEVDSETRKMFIEEIMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 979 lr---~~~~~~~~~~~~~v~~~l~~l~L~~--~--~~~~vg~~~~~~lSgGqrkRl~ia--~~L~~~p~il~lDEPTsgL 1049 (1436)
+. .|...+ .+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+||++||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 233455666664320 0 1111111 1247899999999997 555 89999999999999
Q ss_pred CHHH
Q 038815 1050 DARA 1053 (1436)
Q Consensus 1050 D~~~ 1053 (1436)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
No 224
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=8.2e-10 Score=117.85 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=43.3
Q ss_pred HhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 038815 1033 LVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1033 L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1081 (1436)
.+.+|++|+||||++ ++|......+.+.+....+.|+++|+|+|.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999998877899999999988654
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.94 E-value=3.3e-10 Score=126.55 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=76.3
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCC---CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++... ....+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------------~~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------------FRPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------------cCHHHHHH
Confidence 67899999999999999999999999983 211 11246677766421 01111000
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--hCCCcceecCCCCCCCH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk-Rl~ia~~L~--~~p~il~lDEPTsgLD~ 1051 (1436)
....+. ... +++++.+.+ ....+..+.. .+.-..+++ .+|+++++||||+.+|.
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000110 111 112221110 0124555433 233344444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1052 R-------A-----AAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1052 ~-------~-----~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
. + ...+++.|++++++ |.|||+++|...
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 5 3 34566667776654 999999999653
No 226
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.94 E-value=5.1e-12 Score=148.76 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=103.1
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cccceEEEeccCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TFTRISGYCEQNDIHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~d~~~ 964 (1436)
..+|+++|+.+++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|+...+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 358999999999999999999999999999999998543 2247788887654321 2345689999987766
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCCHHH-HHHHHHHHHHHcC
Q 038815 965 PLV------------TVYESLLYS-----------------------------AWLRLPPEVDSET-RKMFIEEIMELVE 1002 (1436)
Q Consensus 965 ~~l------------Tv~E~l~f~-----------------------------a~lr~~~~~~~~~-~~~~v~~~l~~l~ 1002 (1436)
+.. +++|.+... ..+..+...+..+ .++.+.++...+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 233333110 0000000000000 0000111111111
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1003 L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 200 l-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 V-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp E-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred E-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1 111110 113579999999999999887 688876 999999999999999988653
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.93 E-value=5.7e-10 Score=122.65 Aligned_cols=59 Identities=12% Similarity=-0.013 Sum_probs=43.7
Q ss_pred hhhhheeCCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEEecChh-------------hHHhhcCeEEEecC
Q 038815 350 ALALFMDEISNGLDSS--------TTFQIVNSIRQNIHILNGTAVISLLQPAP-------------ETYDLFDDIILLSD 408 (1436)
Q Consensus 350 a~vlllDEptsgLDs~--------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~-------------~~~~lfD~vilL~~ 408 (1436)
+.++++||||+++|.. ...++++.|+++++..+.++++ ++|... .+...+|.|++|+.
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 5679999999999973 2355677788887766666665 555543 56789999999975
Q ss_pred C
Q 038815 409 G 409 (1436)
Q Consensus 409 G 409 (1436)
.
T Consensus 185 ~ 185 (220)
T 2cvh_A 185 L 185 (220)
T ss_dssp C
T ss_pred e
Confidence 4
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.93 E-value=3.1e-11 Score=141.01 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=90.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cccce--EEEeccCCCCCCCCCHHHH
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TFTRI--SGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~d~~~~~lTv~E~ 972 (1436)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+.+. +.|++|.....|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999643 2357899988764211 12233 4599999988899999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.++..... +. .+++..|+.+..+.+ .++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 001112222111111 112223778887666666777444 3
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1053 AAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
..+++.++.+.+ .+.|+|+++|-
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455666666654 48999999994
No 229
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=2e-11 Score=133.24 Aligned_cols=62 Identities=5% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHH-Hhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 314 YYLKVLGLDICADTLVGDEMIRGISGGQKRR-VTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 314 ~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkR-vsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
.+++..+++.. .++++ ...+|+||||| +..+++. .+++|||||++|.....++.+.|.+...
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34556666532 23332 34699999999 6665544 3689999999999999999999988654
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.92 E-value=1.2e-10 Score=136.07 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHH
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---------QRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.+++|+....|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999886 8999999988754321 1135699999999999999999
Q ss_pred HHhhh
Q 038815 260 LAFSA 264 (1436)
Q Consensus 260 l~f~~ 264 (1436)
+.++.
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 231
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.91 E-value=1.2e-09 Score=115.79 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=58.4
Q ss_pred ccCCCCHHHHHHHhhhhhh---------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 333 MIRGISGGQKRRVTTGPAL---------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~---------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..||||||||++||+++ +++|||||+|||+.+...+.+.|+++.. ++++|+ ++|+ ..+.+.+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~-~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLR-DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSC-HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEec-HHHHHhCCEE
Confidence 3567999999999997654 6899999999999999999999998643 344444 5555 4567899999
Q ss_pred EEec--CCe
Q 038815 404 ILLS--DGL 410 (1436)
Q Consensus 404 ilL~--~G~ 410 (1436)
+.+. +|.
T Consensus 137 ~~v~~~~g~ 145 (173)
T 3kta_B 137 IGVSMRDGV 145 (173)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCE
Confidence 8664 563
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=2.3e-10 Score=137.06 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=92.0
Q ss_pred ccccceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
.++..+ |++||+.+++|++ ++|+|||||||||||++|+|..- .|.-.-. ......++.++|++|++.++
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CE
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCccc
Confidence 334455 9999999999999 99999999999999999999841 2321110 00111235689999999888
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc-CCcc----ccc
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL-GLDI----CAD 326 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~~ 326 (1436)
+.+||.||+.|+.... .+.+.+ ... .......+.++... ++.. ..|
T Consensus 95 ~~ltv~D~~~~g~~~~---------~~~~~~-------------~i~-------~~i~~q~~~~L~e~~~i~r~l~~~~d 145 (427)
T 2qag_B 95 LKLTIVSTVGFGDQIN---------KEDSYK-------------PIV-------EFIDAQFEAYLQEELKIRRVLHTYHD 145 (427)
T ss_dssp EEEEEEEEECCCC-CC---------HHHHSH-------------HHH-------HHHHHHHHHHHHHC--CCCCCCCSCC
T ss_pred cccchhhhhhhhhccc---------cchhhh-------------HHH-------HHHHHHHHHHHHHHHhhhhhhccccc
Confidence 8999999998753211 000000 000 00111223344443 4432 122
Q ss_pred cc----cc--CcccCCCCHHHHHHHhh-----hhhhhhheeCCCCCCCHHHHHHHHHHHHH
Q 038815 327 TL----VG--DEMIRGISGGQKRRVTT-----GPALALFMDEISNGLDSSTTFQIVNSIRQ 376 (1436)
Q Consensus 327 t~----vg--~~~~rgLSGGqrkRvsi-----a~a~vlllDEptsgLDs~t~~~i~~~l~~ 376 (1436)
+. +. .+..++++-.+ +.| ..+.++++|||+..|.+.....+.+.+++
T Consensus 146 ~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 146 SRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp --CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred ccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 22 11 11124677666 333 34457999999999999988888888886
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.91 E-value=2.7e-11 Score=128.34 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------cc-ceEE----EEcCCCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQ-RVAA----YISQHDNHI 251 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~ 251 (1436)
++++|+|+||||||||++.|+|.+++.....|.|.++|.++.+.. .+ +.++ +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 579999999999999999999998874333799999998854432 11 2345 777765443
No 234
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.90 E-value=1e-10 Score=125.97 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=54.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHhhh
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRETLAFSA 264 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 264 (1436)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.|++.+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHH
Confidence 678999999999999999999999998 33 799999998753221 1234567777543 4678999987754
No 235
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.90 E-value=1.5e-09 Score=129.66 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl------~ia~~L~~~-p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++..+.+.|+++. .+.+||+|+|+|. +....|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999864 3569999999974 4455555
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.88 E-value=1.4e-09 Score=121.39 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCC--CCcccEEEEcCc
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSS--LKVSGRVTYNGH 230 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG--~~~~~--~~~~G~I~~~G~ 230 (1436)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 5689999999999999999999999999 44331 011566666654
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.88 E-value=2.3e-10 Score=138.56 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=69.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC------C---ccceEEEEcCCCCCC
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF------E---PQRVAAYISQHDNHI 251 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 251 (1436)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999988765331 0 134689999998888
Q ss_pred CCCCHHHHHHhhh
Q 038815 252 GEMTVRETLAFSA 264 (1436)
Q Consensus 252 ~~lTV~E~l~f~~ 264 (1436)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999864
No 238
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.86 E-value=2.1e-11 Score=150.68 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=65.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......+.++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4688999999999999999999999999999999999887 8999999865212212345677777655334568888
Q ss_pred HHHhhhh
Q 038815 259 TLAFSAR 265 (1436)
Q Consensus 259 ~l~f~~~ 265 (1436)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.86 E-value=1.6e-10 Score=134.00 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=80.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeecccc--ccc-ceEEEeccCCCCC-----CCCCH
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQE--TFT-RISGYCEQNDIHS-----PLVTV 969 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~d~~~-----~~lTv 969 (1436)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|...... .++ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 654 35789998 78654321 122 2579999998553 67899
Q ss_pred HHHH--HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 038815 970 YESL--LYSA----WLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 1032 (1436)
Q Consensus 970 ~E~l--~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~ 1032 (1436)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 877 4431 0111111111122346889999999986 556553 4699999999999874
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.86 E-value=5.6e-10 Score=129.42 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=78.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCcc---ceEEEEcCCCCCC-----CCCCHH
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEPQ---RVAAYISQHDNHI-----GEMTVR 257 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 257 (1436)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++... +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 999999 89876543221 2479999998543 78999
Q ss_pred HHH--Hhhh----hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-ccccccc
Q 038815 258 ETL--AFSA----RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADTLVG 330 (1436)
Q Consensus 258 E~l--~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg 330 (1436)
|++ .|+. .|+-. ++.+.. +....++.+++.+||++ .++.
T Consensus 238 e~l~~~f~~~~~~~c~~~-----------------~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~--- 283 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYP-----------------DCTHTN--------------EPGCAVKEAVKNGEISCERYKS--- 283 (302)
T ss_dssp GGGGGGCGGGHHHHHHST-----------------TCCSSS--------------CTTCHHHHHHHTTSSCHHHHHH---
T ss_pred HHHHHHHHHHHHccCCCC-----------------CCCCCC--------------CCCCHHHHHHHcCCCCHHHHHH---
Confidence 888 4531 01100 000000 01123567788899975 4443
Q ss_pred CcccCCCCHHHHHHHhhhhh
Q 038815 331 DEMIRGISGGQKRRVTTGPA 350 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a 350 (1436)
+++.|||.++|++.||+.
T Consensus 284 --~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 284 --YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp --HHHHTTCCCTTHHHHSSC
T ss_pred --HHHHHHHHHHHHHHHhcc
Confidence 445699988899998873
No 241
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.86 E-value=3e-10 Score=130.66 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=80.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhcc
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQG 268 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 268 (1436)
+++.+++|.||+|||||||.+.|++.+.+ .| . .++.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 1 12345666999988864 88999887531000
Q ss_pred CCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc-----CcccCCCCHHHHH
Q 038815 269 VGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG-----DEMIRGISGGQKR 343 (1436)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-----~~~~rgLSGGqrk 343 (1436)
. +.. .+.....+.+. ....++.+.-. .+|..+ ..+...+||||+|
T Consensus 92 l---------~~~----~g~p~a~d~~~---------------l~~~l~~l~~g--~~t~~~~~v~~p~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 L---------LQG----RGLPGTHDMKL---------------LQEVLNTIFNN--NEHPDQDTVVLPKYDKSQFKGEGD 141 (290)
T ss_dssp G---------GSS----SCSTTSBCHHH---------------HHHHHHHHTC--------CCEEEECCEETTHHHHTCE
T ss_pred h---------hhh----ccCcchhHHHH---------------HHHHHHHhhcc--CccccCcceeeccCccccCCcccc
Confidence 0 000 00000111111 12234444322 111111 1234679999999
Q ss_pred HHhhh-----hhhhhheeCCCCCCCHHH
Q 038815 344 RVTTG-----PALALFMDEISNGLDSST 366 (1436)
Q Consensus 344 Rvsia-----~a~vlllDEptsgLDs~t 366 (1436)
|+.++ ++.|+|+||++++||+..
T Consensus 142 R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred ccccccceEcCCCEEEEeCccccCCccc
Confidence 98875 667899999999999853
No 242
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.86 E-value=1.5e-11 Score=143.71 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCcccEEEEcCccCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL--------DSSLKVSGRVTYNGHNMDEF 235 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~--------~~~~~~~G~I~~~G~~~~~~ 235 (1436)
++++|+|+||||||||||.|+|.. .++ .|+|.++|.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~ 53 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDR 53 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCC
Confidence 689999999999999999999986 344 89999999887543
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.83 E-value=2.5e-10 Score=136.09 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=49.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 247 (1436)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEee
Confidence 677776 7899999999999999999999999998752 1699988776653 3334556778774
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.82 E-value=5.2e-11 Score=130.50 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=67.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
.++|++++|+||||||||||+++|+|.... |...|.|.++|.. +.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~-------------------~~~-~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH-------------------LDN-RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB-------------------CCH-HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc-------------------CCH-HHHHHhcccccCC
Confidence 478999999999999999999999996431 2223555555432 211 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCCcceecCCC
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1046 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia-~~L~~~p~il~lDEPT 1046 (1436)
.+...+.. ...+.+..+...+-.+..++..+ .++|+||+||+++| +.++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 11111111 12223333222111122222222 35799999999998 8899999999999985
No 245
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.80 E-value=3.4e-09 Score=129.19 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+.|.++|+|+|++ .+.+..|+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~ 405 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDA 405 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCE
Confidence 469999999999999999 57999999999999999999999999999865578999999984 55666676
No 246
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.6e-09 Score=126.50 Aligned_cols=136 Identities=15% Similarity=0.036 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-CCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR-KTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEV 985 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~ 985 (1436)
+.|.||||+|||||+++|++. .. ...|.+.++|.+... ....+.+++++|.+.+.-..+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence 899999999999999999993 32 235778888764321 112455788887654311100 0 0 000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 038815 986 DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065 (1436)
Q Consensus 986 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~ 1065 (1436)
... .+.+.++.+....-.+... .+|| +..+|+++++|||++ ||..+...+.++|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333332111111110 3565 788999999999999 99999999999998753
Q ss_pred HcCCEEEEEecCCCH
Q 038815 1066 ETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1066 ~~g~tvi~t~Hqps~ 1080 (1436)
.+.++|+++|+|..
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 36899999999863
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.77 E-value=1.6e-11 Score=147.95 Aligned_cols=133 Identities=13% Similarity=-0.010 Sum_probs=88.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccccceEEEec------
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETFTRISGYCE------ 958 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 958 (1436)
..+|+++ + .++|++++|+|||||||||||++|+|.... .+|+|.+.|.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4478888 4 489999999999999999999999996542 25788887765421 11233445544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 959 ---QNDIH--SPL----VTVYESLLYSAWLRL----PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 959 ---Q~d~~--~~~----lTv~E~l~f~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
|++.. .+. .|+.+++.++..-.. ....+. .+.++ .+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i~-rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAVT-RLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHHH-HHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHHH-HHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77544 233 588998877532110 001111 11223 46677887653 2 2479999999
Q ss_pred HHHHHHHHhhCCCcce
Q 038815 1026 RLTIAVELVANPSIIF 1041 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~ 1041 (1436)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
No 248
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.76 E-value=7.5e-12 Score=154.66 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=102.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++++++.+++|+.++|+|||||||||||++|+|...+ ..|.|.++|.+.-...-...++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3478999999999999999999999999999999997653 36889998854211111234556665544222345555
Q ss_pred HHHHhhhhcCCC------CCCHHHHHH------------------HHHHHHHHcCCCc--ccccccCC-C----CCCCCC
Q 038815 972 SLLYSAWLRLPP------EVDSETRKM------------------FIEEIMELVELNP--LRQSLVGL-P----GVSGLS 1020 (1436)
Q Consensus 972 ~l~f~a~lr~~~------~~~~~~~~~------------------~v~~~l~~l~L~~--~~~~~vg~-~----~~~~lS 1020 (1436)
.+.-+ +|+.+ ++...+-.. .++++++.+...+ ....++.. . ....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 54322 22211 111111111 1223333333311 11111100 0 013579
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC--TIHQP 1078 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--t~Hqp 1078 (1436)
+|||||++++. + | |+|||+.+...+++.|.++.+.|+|+++ ++|+.
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l 450 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL 450 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH
Confidence 99999987752 1 7 9999998877777777776666889875 78863
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.76 E-value=1.3e-10 Score=140.03 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=63.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEE--
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAY-- 243 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~y-- 243 (1436)
..+....+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.+++
T Consensus 151 ~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f 225 (418)
T 1p9r_A 151 MTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTF 225 (418)
T ss_dssp CCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCH
T ss_pred CCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCH
Confidence 334445688888 4 4899999999999999999999999999876 8999999987642111 122334
Q ss_pred -------EcCCCCC--CCC----CCHHHHHHhhh
Q 038815 244 -------ISQHDNH--IGE----MTVRETLAFSA 264 (1436)
Q Consensus 244 -------v~Q~d~~--~~~----lTV~E~l~f~~ 264 (1436)
+.|++.. +++ .|+.+++.++.
T Consensus 226 ~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 226 ARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 3377654 354 58888887653
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.75 E-value=3.1e-09 Score=127.24 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=77.7
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHH--HCCCC---CCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~L--ag~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
.+-+++|++++|+||||||||||++.| .+..+ ++.-.+.+++++.... .. +.+
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---------------------~~-~rl 229 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---------------------RP-VRL 229 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CH-HHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---------------------CH-HHH
Confidence 368999999999999999999999955 45432 1122356677664210 00 111
Q ss_pred H-HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCCcceecCCCCCC
Q 038815 974 L-YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 974 ~-f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg-GqrkRl~ia~~L~--~~p~il~lDEPTsgL 1049 (1436)
. ...++. ... +++++.+- +. +..+. .+++.+..+.+++ .+|+++++||||+.+
T Consensus 230 ~~~a~~~g----l~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 230 VSIAQRFG----LDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred HHHHHHcC----CCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence 0 011111 011 11222111 11 11222 2344444444443 369999999999999
Q ss_pred CHHHH------------HHHHHHHHHHHHc-CCEEEEEecC
Q 038815 1050 DARAA------------AIVMRTVKNTVET-GRTVVCTIHQ 1077 (1436)
Q Consensus 1050 D~~~~------------~~i~~~l~~~~~~-g~tvi~t~Hq 1077 (1436)
|.... ..+++.|++++++ |.|||+|+|.
T Consensus 287 ~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 287 RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp C------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred chhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 96533 6788889988865 9999999997
No 251
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=3.3e-11 Score=143.59 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=111.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCcccEEEEcCccCCC----CCccceE---EEEcCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGK------------LDSSLKVSGRVTYNGHNMDE----FEPQRVA---AYISQH 247 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 247 (1436)
.+++|..++|+|+||||||||+++|+|. .+| .+|.|.++|..++. ..+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 233 38999999854311 1223333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 248 DNHIGEMTVRETL--AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 248 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
+-+.+.++..|.| .|-..++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777777766655 332222211 0011111111
Q ss_pred cccccCcccCCCCHHHHHHHhhhhh--hhhheeCCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecChhhHHhhcCe
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPA--LALFMDEISNGLDSSTTFQIVNSIRQN-IHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a--~vlllDEptsgLDs~t~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
++..+..+||+. .| .++++|||+.++|.......++.++.. .. .+.| ++ .|...++.++||+
T Consensus 127 ----~d~~i~~v~~~~-------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~~l~~~ 191 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV-------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQAIIEK 191 (392)
T ss_dssp ----CTTCSSCCSSSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHHHHHHH
T ss_pred ----ccceeeeecccc-------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHHHHHHH
Confidence 122233356543 45 689999999999999999988888875 32 3333 33 7788899999999
Q ss_pred EE-EecCC-eEEEecChH
Q 038815 403 II-LLSDG-LIVYLGPRE 418 (1436)
Q Consensus 403 vi-lL~~G-~iv~~G~~~ 418 (1436)
+. +|.+| ++++.|+.+
T Consensus 192 i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 192 VYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHTTCSCGGGSCCC
T ss_pred HHHHhccCCceeecCCCC
Confidence 99 99999 888777543
No 252
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=1.3e-10 Score=137.04 Aligned_cols=157 Identities=21% Similarity=0.207 Sum_probs=97.6
Q ss_pred ccceeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEEcCccCCCC---CccceEEEE
Q 038815 176 KHLTILKDVSGIIRPG-------SMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEF---EPQRVAAYI 244 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~G-------e~~~llGp~GSGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv 244 (1436)
+...++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456888999999877 8999999999999999999999873221 1367666666554221 123568999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
.|.+.+.+ ++.|+|.......+. +.. .... .....++..+..++|..
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~~------------------------~~~~~i~~~l~~~~li~- 155 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQI----DIM--IGKG------------------------PSAKSIRIDIQPFTLVG- 155 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-
T ss_pred cchhhcCH--HHHHHHHHHHHhccc----cee--eccC------------------------cccccccccCCCeEEEE-
Confidence 99876654 788888543321110 000 0000 00011222334445533
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHIL 381 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~ 381 (1436)
+++.. ..||+|+|+|+.++ .+||+.+..++.+.|++.++..
T Consensus 156 at~~~-----~~Ls~~l~sR~~l~-----------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 156 ATTRS-----GLLSSPLRSRFGII-----------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp EESCG-----GGSCHHHHTTCSEE-----------EECCCCCHHHHHHHHHHHHHHT
T ss_pred ecCCc-----ccCCHHHHHhcCce-----------eeCCCCCHHHHHHHHHHHHHHc
Confidence 44443 36999999998665 6788888888999988876543
No 253
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.66 E-value=1.4e-09 Score=116.07 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=35.8
Q ss_pred hhhhhhheeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 348 GPALALFMDEISN-GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 348 a~a~vlllDEpts-gLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
..+.+|++|||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 3567999999985 9999999888888877543 466777766666544
No 254
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1e-08 Score=118.76 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCc---cceEEEEcCCCC------------
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEP---QRVAAYISQHDN------------ 249 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~------------ 249 (1436)
+.+|++++|+||||||||||||+|+|...|. +|+|.+ +|++++.... .+.++|+.|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4479999999999999999999999999987 999999 8987754322 134789999874
Q ss_pred ----CCCCCCHHHHHHhh
Q 038815 250 ----HIGEMTVRETLAFS 263 (1436)
Q Consensus 250 ----~~~~lTV~E~l~f~ 263 (1436)
++|++|| ||+.|+
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 5888888 888875
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.61 E-value=1.7e-08 Score=120.97 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=41.2
Q ss_pred hhhhheeCCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hhHHh
Q 038815 350 ALALFMDEISNGLDSSTT------------FQIVNSIRQNIHILNGTAVISLLQPA-------------------PETYD 398 (1436)
Q Consensus 350 a~vlllDEptsgLDs~t~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~~~ 398 (1436)
+.++++|||++.+|+... .++++.|+++++..+.|+|++ +|.. ..+..
T Consensus 274 ~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l~~ 352 (400)
T 3lda_A 274 FSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIMAY 352 (400)
T ss_dssp EEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHHHH
T ss_pred CceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHHHH
Confidence 557899999999996543 678888888887766666665 4441 22456
Q ss_pred hcCeEEEecCCe
Q 038815 399 LFDDIILLSDGL 410 (1436)
Q Consensus 399 lfD~vilL~~G~ 410 (1436)
.+|.++.|.+|+
T Consensus 353 ~ad~vl~L~~~~ 364 (400)
T 3lda_A 353 SSTTRLGFKKGK 364 (400)
T ss_dssp HCSEEEEEEECS
T ss_pred hcceEEEEEecC
Confidence 789999998763
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.60 E-value=3.9e-11 Score=130.46 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=38.4
Q ss_pred hhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 346 TTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 346 sia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
-+.+|.+++|||+|+++|..+...|.+.|....+.. ...| . . ..||.|+++++
T Consensus 121 ~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 121 FVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp EEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred EEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 335667899999999999999999999888765431 1122 1 1 57899988764
No 257
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=4.6e-09 Score=121.13 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeeccc-ccccce-EEEeccCCCCCC----CCCHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQ-ETFTRI-SGYCEQNDIHSP----LVTVY 970 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~-~~~~~~-~gyv~Q~d~~~~----~lTv~ 970 (1436)
+.+.+|++++|+||||||||||+|+|+|... ..+|+|.+ +|..... ....+. .||+.|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999754 35788988 6754322 112222 799999987655 6789
Q ss_pred HHHH--Hhh------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 971 ESLL--YSA------WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 971 E~l~--f~a------~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|+++
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1121111111122345889999999986433221 246667666
No 258
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.59 E-value=4.6e-09 Score=126.31 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=92.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..... ..++++.+++ ...+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~--~~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSE--EERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSS--SCEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecC--cceEEEEecc
Confidence 389999999999999999999999999999999742 22333333222 2356666543 1111222211
Q ss_pred Hh---hhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 261 AF---SARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 261 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
-+ +....+.+. .+.+. ...++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011222233332 2345579
Q ss_pred CHHHHHHHhhhhh-----hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 338 SGGQKRRVTTGPA-----LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 338 SGGqrkRvsia~a-----~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
|+||+||+.++++ .++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 9999999998654 35677 99998776 55555555544345566665555555666666554
No 259
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=1.5e-08 Score=116.93 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=43.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCc-cce-EEEEcCCCCCCC----CCCHHH
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEP-QRV-AAYISQHDNHIG----EMTVRE 258 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~E 258 (1436)
+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|+.|++...+ .+|+ |
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4579999999999999999999999998876 999998 8876543221 122 689999986655 6899 9
Q ss_pred HHH
Q 038815 259 TLA 261 (1436)
Q Consensus 259 ~l~ 261 (1436)
+|.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 884
No 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.57 E-value=1.4e-10 Score=132.59 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=85.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCC-CCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQND-IHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d-~~~~~l 967 (1436)
..+++++++.+++| ++|.||||+|||||+++|+|.... |.|.++|...... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45789999999999 999999999999999999996542 6788988654221 1234466777763 445566
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
++.|++...+..|. .. . .+ .+....+.+ ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~-~---~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR-E---TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC-c---ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 0 00 112222333 2469999999999999999999985 88864
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.57 E-value=1.9e-09 Score=118.00 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=27.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999875
No 262
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.57 E-value=3.5e-10 Score=129.26 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=57.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCC-CCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHD-NHIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 253 (1436)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998753 789999987643321 23455666653 34455
Q ss_pred CCHHHHHHh
Q 038815 254 MTVRETLAF 262 (1436)
Q Consensus 254 lTV~E~l~f 262 (1436)
+++.|++..
T Consensus 106 i~~~Deid~ 114 (274)
T 2x8a_A 106 VIFFDEVDA 114 (274)
T ss_dssp EEEEETCTT
T ss_pred eEeeehhhh
Confidence 555555543
No 263
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.56 E-value=1e-07 Score=113.80 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=67.2
Q ss_pred HHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHHhh------h-----h-hhhhheeCCCCCCCHHHHH
Q 038815 312 TDYYLKVLGLDIC-------ADTLVGD----EMIRGISGGQKRRVTT------G-----P-ALALFMDEISNGLDSSTTF 368 (1436)
Q Consensus 312 ~~~~l~~lgL~~~-------~~t~vg~----~~~rgLSGGqrkRvsi------a-----~-a~vlllDEptsgLDs~t~~ 368 (1436)
++..++.+++.+. .+..+.+ ..+..+||||||||++ + . |.+++|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 4456777777651 1222222 4456899999999854 2 3 6789999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 369 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 369 ~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+.+.|+++. .++++++ ++|.. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 9999998752 2345554 55654 4788999999997
No 264
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.56 E-value=5.3e-10 Score=131.64 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=93.1
Q ss_pred eEEeeceEeeEeCC-------cEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEEcCeeccc---ccccceEEEecc
Q 038815 892 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGSITISGYLKKQ---ETFTRISGYCEQ 959 (1436)
Q Consensus 892 ~~iL~~vs~~i~~G-------e~~al~G~sGaGKTTLl~~Lag~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 959 (1436)
..++++++..+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34778888888876 88999999999999999999985421 1345555544432211 112456899999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 038815 960 NDIHSPLVTVYESLLYSAWLRLPPEV--DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037 (1436)
Q Consensus 960 ~d~~~~~lTv~E~l~f~a~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p 1037 (1436)
.+.+.+ ++.|+|........ ... ......+.+++.++.++|.. +++. ...||+|+|+|+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 877765 78888853322111 000 01111223444444455543 3333 246999999998655
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHHc
Q 038815 1038 SIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067 (1436)
Q Consensus 1038 ~il~lDEPTsgLD~~~~~~i~~~l~~~~~~ 1067 (1436)
.+||+.+...+.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999987653
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.55 E-value=4e-09 Score=122.70 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=60.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEE---cCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhh
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTY---NGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFS 263 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 263 (1436)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999887 66 899999 8876432 123446788 877788899999999987
Q ss_pred hhhc
Q 038815 264 ARCQ 267 (1436)
Q Consensus 264 ~~~~ 267 (1436)
.++.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
No 266
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.52 E-value=1.9e-08 Score=122.35 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=49.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 234 (1436)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999987 9999999988754
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.51 E-value=1.4e-09 Score=126.51 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred EeeceEeeE-------------------eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeeccccccc
Q 038815 894 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQETFT 951 (1436)
Q Consensus 894 iL~~vs~~i-------------------~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~~~~ 951 (1436)
+++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ +|..... ..+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HHH
Confidence 677777777 89999999999999999999999995321023588888 8875432 223
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 952 RISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 952 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
+.+|++ |...+.+.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 457888 7777778889999998766554
No 268
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=2.1e-09 Score=128.01 Aligned_cols=156 Identities=9% Similarity=0.033 Sum_probs=102.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC----------CCCeeEEEEEEcCeeccc----ccccce---EEEeccCCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGSITISGYLKKQ----ETFTRI---SGYCEQNDIH 963 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~Q~d~~ 963 (1436)
.+++|..++|+|+||||||||+|+|+|.. +..+..|.+.++|..... ..-++. ..++.+..-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 66889999999999999999999999932 123467999998842210 011122 2466777767
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--Cc
Q 038815 964 SPLVTVYESL--LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1039 (1436)
Q Consensus 964 ~~~lTv~E~l--~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p--~i 1039 (1436)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 6767766655 444443321 11111122211 1 1122355542 89 99
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhhhhc
Q 038815 1040 IFMDEPTSGLDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFESFDEAI 1090 (1436)
Q Consensus 1040 l~lDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~t~Hqps~~if~~FD~~~ 1090 (1436)
+++|||+.++|.......++.+++. .+.|.||+ +|.. .++.+.+|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~ 193 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHH
Confidence 9999999999999999999999988 66677864 8874 46777888743
No 269
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.48 E-value=1.1e-07 Score=98.40 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666 8999999999999999999999998764
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.48 E-value=6.9e-11 Score=128.55 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHH-HHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1029 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1029 ia~-~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+++ +++.+|++++|||+|+++|..+...|.+.|++..+
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455 67889999999999999999999999999887654
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.6e-08 Score=117.22 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=64.4
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeecccc-c-c-cceEEEeccCCC------------
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQE-T-F-TRISGYCEQNDI------------ 962 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~-~-~-~~~~gyv~Q~d~------------ 962 (1436)
.+.+|++++|+||||||||||||+|+|... +.+|+|.+ +|...... . + .+.+||+.|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999765 35799998 78654321 1 1 135799999874
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 038815 963 ----HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSL 1010 (1436)
Q Consensus 963 ----~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 1010 (1436)
++|.+|+ ||+.|.. .+ . ..+....++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 8887752 11 1 112234688999999995 555544
No 272
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.47 E-value=3.8e-09 Score=124.29 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHD 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d 248 (1436)
....+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++
T Consensus 40 ~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 40 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 116 (337)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence 3456899999999999999999999999999999999998876 89999999876432 1245689999988
Q ss_pred CCCCC
Q 038815 249 NHIGE 253 (1436)
Q Consensus 249 ~~~~~ 253 (1436)
..++.
T Consensus 117 ~~~~~ 121 (337)
T 2qm8_A 117 NAFIR 121 (337)
T ss_dssp TEEEE
T ss_pred ccccc
Confidence 77654
No 273
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.1e-07 Score=112.45 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAG-KLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHD 248 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d 248 (1436)
++|.||||+|||||+++|+| ...++ .|+|.++|.+..... .+..++|++|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccc
Confidence 89999999999999999999 56665 899999987654221 134567777765
No 274
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.37 E-value=8.7e-07 Score=102.14 Aligned_cols=128 Identities=19% Similarity=0.099 Sum_probs=84.2
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
+++++. +|++++|+|+||+||||++..|++.... ..|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~------------------~~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP------------------AAR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH------------------HHH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH------------------hHH-HHH--
Confidence 677887 9999999999999999999999985431 135666655432100 000 001
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC-CCCCCHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1054 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP-TsgLD~~~~ 1054 (1436)
..+.+..++..+... .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 112233455432110 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHHcCCEEEEEe
Q 038815 1055 AIVMRTVKNTVETGRTVVCTI 1075 (1436)
Q Consensus 1055 ~~i~~~l~~~~~~g~tvi~t~ 1075 (1436)
..+.+..+.+. ...+++++-
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888777653 344554443
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.37 E-value=1e-07 Score=110.16 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=73.4
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhh
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA 977 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a 977 (1436)
+++..++|++++|+|+|||||||++..|++.... ..|+|.+.+.+.. + + ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~----r-------------~--~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTF----R-------------A--AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTT----C-------------H--HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccc----c-------------H--HHHHH-----
Confidence 4555689999999999999999999999985421 1245555443210 0 0 00111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 978 WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 978 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl---~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
++...+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 223344455532 124688999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 038815 1055 AIVMRTVKNT 1064 (1436)
Q Consensus 1055 ~~i~~~l~~~ 1064 (1436)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.35 E-value=2.3e-08 Score=108.52 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCCCCCHHHHHH
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .+..++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 46678999999999999999999999999863 3555554433221 1345789999887777777766654
Q ss_pred h
Q 038815 262 F 262 (1436)
Q Consensus 262 f 262 (1436)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 4
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.33 E-value=3.6e-08 Score=110.14 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.0
Q ss_pred hCCCcceecCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCC
Q 038815 1035 ANPSIIFMDEPTSGL--DARAAAIVMRTVKNTV-ETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps 1079 (1436)
.+|+++++|+||+.+ |......++..+.+++ +.|.|||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 479999999999988 5544555556666655 46899999999765
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.32 E-value=5.8e-07 Score=96.56 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCC-------C--eeEEEEEEcCeecccc-----cccceEEEeccCCCC-CCCCCHHH
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTG-------G--YITGSITISGYLKKQE-----TFTRISGYCEQNDIH-SPLVTVYE 971 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~-------~--~~~G~i~i~g~~~~~~-----~~~~~~gyv~Q~d~~-~~~lTv~E 971 (1436)
.++|+|+||||||||++.|+|.... + ...|.|.++|...... ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999985431 1 2478999998643210 011111222221000 00111111
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
..... +.+......+++.+... ....=..+++. .+|.....+.+.+|++++.+|+++++| ||++|.
T Consensus 111 ~~~~~---------s~~~~~~~~~~~~~~~~-~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKELRDHAD-SNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---------HHHTHHHHHHHHHHHSC-TTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---------HHHHHHHHHHHHHHhcC-CCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 10000 00000011112211111 11111112221 123333345678999999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 038815 1052 RAAAIVMRTVKNT 1064 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~ 1064 (1436)
.....+++.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988753
No 279
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.31 E-value=5.1e-10 Score=126.41 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCC-CCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQND-IHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d-~~~~~l 967 (1436)
..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|...... ...+.+++++|.. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999 99999999999999999998653 46778887543211 1123345666653 345667
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 968 TVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
++.|++...+..+... ....++..+.+++++. .+||||+||+.|++++..+|++ +|++.
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 7777774322221110 0111222333444332 4789999999999999999987 56543
No 280
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.30 E-value=5.7e-07 Score=110.23 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=94.6
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+.. ++..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E----------------------~s~~~ 246 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLE----------------------MSAQQ 246 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESS----------------------SCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECC----------------------CCHHH
Confidence 368888888999999999999999999999998874210 011 22221111 11111
Q ss_pred HHHH--hh-------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCcc
Q 038815 972 SLLY--SA-------WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSII 1040 (1436)
Q Consensus 972 ~l~f--~a-------~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~--~~p~il 1040 (1436)
...- +. .++. ...+.++ ...+.+.++.++..++.-. . ..++|.+|.+ +.++.++ .+|+++
T Consensus 247 l~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~li 317 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMI 317 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 1100 00 1111 1223322 2345556666654443211 1 2368999987 5677776 579999
Q ss_pred eecCCCCCCC--------HHHHHHHHHHHHHHHHc-CCEEEEEec
Q 038815 1041 FMDEPTSGLD--------ARAAAIVMRTVKNTVET-GRTVVCTIH 1076 (1436)
Q Consensus 1041 ~lDEPTsgLD--------~~~~~~i~~~l~~~~~~-g~tvi~t~H 1076 (1436)
++|+++...+ ......+.+.|+++++. |.+||+++|
T Consensus 318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 9999998774 23446788889998865 999999999
No 281
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.28 E-value=1.9e-09 Score=123.50 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCC-CCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDI-HSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~-~~~~l 967 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 34789999999999 99999999999999999998654 46788887543211 11233556666542 45667
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 968 TVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
++.|++...+..+... ....++..+.+.+++ ..+||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 7777774322211110 001122223333333 24789999999999999999986
No 282
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.27 E-value=2.3e-08 Score=126.94 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=98.1
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCC--------
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI-------- 962 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~-------- 962 (1436)
...++++++..+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+.. .....++||++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHHH
Confidence 345789999999999999999999999999999999976432 2478888876543 23456788876431
Q ss_pred --------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038815 963 --------------HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1028 (1436)
Q Consensus 963 --------------~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ 1028 (1436)
.+..+++.+|+.....-..+...-.+ . ....-+++|........ ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222222110000000000000 0 00011122221111111 1469999999999
Q ss_pred HHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHH
Q 038815 1029 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063 (1436)
Q Consensus 1029 ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~ 1063 (1436)
.+....+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888888874
No 283
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.26 E-value=8.2e-07 Score=104.72 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.5
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|-+++|+++.|.||+|+|||||+..++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999888775
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.22 E-value=1.4e-08 Score=124.40 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=93.3
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC----CCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCC-----
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLV----- 967 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l----- 967 (1436)
.+++.+..|..++|.|++||||||+|+.|.. +.++ |++.+.+.+.+...+.. | ...|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~---~-----~~lPhl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV---Y-----EGIPHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG---G-----TTCTTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh---h-----ccCCcccceee
Confidence 3667778899999999999999999999864 2222 33433333322111111 0 011111
Q ss_pred -CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCCCCHHHHHHH----------HHHHHHh
Q 038815 968 -TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS--LVGLPGVSGLSTEQRKRL----------TIAVELV 1034 (1436)
Q Consensus 968 -Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~lSgGqrkRl----------~ia~~L~ 1034 (1436)
.+.+....-.++ .++.+++ .+.++..|+.++.+. .+ ...+|+||+||. .+++++.
T Consensus 227 td~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 227 TDMKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp CSHHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCC
T ss_pred cCHHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccc
Confidence 122222111111 1222222 367888888776432 11 124678887753 3455666
Q ss_pred hCCC-cceecCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCCHH
Q 038815 1035 ANPS-IIFMDEPTSGLDARAAAIVMRTVKNTVET----GRTVVCTIHQPSID 1081 (1436)
Q Consensus 1035 ~~p~-il~lDEPTsgLD~~~~~~i~~~l~~~~~~----g~tvi~t~Hqps~~ 1081 (1436)
..|. ++++||++.-+|.. ...+.+.|.++++. |.++|+++|+|+.+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred cCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 7888 68999999998843 34566666666543 66999999999854
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.20 E-value=8.1e-08 Score=104.23 Aligned_cols=68 Identities=22% Similarity=0.145 Sum_probs=43.5
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHHHH
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|+...++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678999999999999999999999999742 24455533221 1124457888887655444444433
No 286
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.19 E-value=1.3e-07 Score=120.06 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=55.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 247 (1436)
...++++++..+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+... ..++|++|.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g 112 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPAC 112 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETT
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecc
Confidence 345889999999999999999999999999999999999774 2488999888765543 357888764
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.14 E-value=5.5e-07 Score=99.94 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=23.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA-GKLDS 217 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~La-G~~~~ 217 (1436)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98743
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.13 E-value=2.4e-06 Score=95.16 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=40.2
Q ss_pred hhhhheeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh--------HHhhcCeEEEecC
Q 038815 350 ALALFMDEISNGL--DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE--------TYDLFDDIILLSD 408 (1436)
Q Consensus 350 a~vlllDEptsgL--Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~lfD~vilL~~ 408 (1436)
+.++++|++++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 129 ~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 4578999999988 6555566777777777665555555 5555444 5678899999974
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.12 E-value=3.2e-07 Score=111.69 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=43.9
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+|+|+|+.+++ +++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 368999999999 9999999999999999999999654 2468899999754
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.07 E-value=2.6e-06 Score=91.93 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~ 1065 (1436)
....|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999 99999999999998887654
No 291
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.03 E-value=1.5e-07 Score=104.02 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-----------ccceEEEEcCC
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-----------PQRVAAYISQH 247 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 247 (1436)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999987 899999998763211 12457788773
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.03 E-value=3.7e-06 Score=96.82 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=39.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHh
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAF 262 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 262 (1436)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.++.. ..++.|.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~ 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKT 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHH
Confidence 479999999999999999999999998653 45 13556666542 3456666654
No 293
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=3.1e-06 Score=100.37 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=88.0
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHCCCCC---------CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH---
Q 038815 904 PGVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY--- 970 (1436)
Q Consensus 904 ~Ge~-~al~G~sGaGKTTLl~~Lag~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~--- 970 (1436)
.|-. ++|+|++|||||||+|.|+|.... +...|.+.++|.+.. +....|++.+.+. ..|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999996421 145789999885431 2233455544221 1121
Q ss_pred HHHHHhh--h--hc-CC-CCCC--HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCC
Q 038815 971 ESLLYSA--W--LR-LP-PEVD--SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANP 1037 (1436)
Q Consensus 971 E~l~f~a--~--lr-~~-~~~~--~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia----~~L-~~~p 1037 (1436)
..+.... . +. .. .+.. ..+..+.+.++++.+++.+..--+|++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 1111100 0 00 00 1111 1233344677888888765442223322 234688888888887 444 3333
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1038 SIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1038 ~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
++ +|||++|......+.+.|.+...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 43 89999999999999999988654
No 294
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=2.4e-06 Score=100.39 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=31.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVT 226 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~ 226 (1436)
=+++|+++.|.||||||||||+..+++...+. .|.|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~Vl 93 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAA 93 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 58899999999999999999999999886543 45553
No 295
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=4.6e-06 Score=101.91 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVKNTV----ETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~t~Hqps 1079 (1436)
++++.|-.++.+....|.|||+||+ ++|.|......+.+++..+- +.+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24678999999984
No 296
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.99 E-value=9.9e-07 Score=108.12 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=102.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345789999889999999999999999999999999875431 23 113444422 333
Q ss_pred HHHHHhh-hhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 257 RETLAFS-ARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
.+...-. +...++.. ..+ ..+. ...+.+ . .....++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l-----~~g~---l~~~~~-----------~-~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL-----RTGK---LTPEDW-----------G-KLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH-----HTSC---CCHHHH-----------H-HHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH-----hcCC---CCHHHH-----------H-HHHHHHHHHhcCCE---EEEC--CC
Confidence 3322110 00001100 000 0000 000000 0 11222333332221 1111 23
Q ss_pred CCCHHHHHHHhh-----hhhhhhheeCCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec-----------
Q 038815 336 GISGGQKRRVTT-----GPALALFMDEISNGLDS--------STTFQIVNSIRQNIHILNGTAVISLLQ----------- 391 (1436)
Q Consensus 336 gLSGGqrkRvsi-----a~a~vlllDEptsgLDs--------~t~~~i~~~l~~~~~~~~~t~ii~~~q----------- 391 (1436)
++|++|.+...- ..+.++++|+++...++ ....++.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~~~ 373 (454)
T 2r6a_A 295 SIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQDK 373 (454)
T ss_dssp TCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC---
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCCCC
Confidence 689999875433 23557999999997742 33467888899988876655555 566
Q ss_pred -Ch-------hhHHhhcCeEEEecCCeE
Q 038815 392 -PA-------PETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 392 -~~-------~~~~~lfD~vilL~~G~i 411 (1436)
|. ..+...+|.|++|+.++.
T Consensus 374 ~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 374 RPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 156778999999987754
No 297
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.97 E-value=5e-07 Score=110.79 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCcccEEEEcCccCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMD 233 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG--~~~~~~~~~G~I~~~G~~~~ 233 (1436)
.+++.+..+..++|.|++||||||+|++|.. ..... .|+|.+.+.|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCc
Confidence 3677788899999999999999999999875 23332 467766665543
No 298
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.96 E-value=5.7e-06 Score=95.30 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=62.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP 982 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~ 982 (1436)
++|++++|+|+||+||||++..|++.... ..| +.++++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47999999999999999999999985321 012 13455555442 2345555543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHH
Q 038815 983 PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062 (1436)
Q Consensus 983 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~ 1062 (1436)
.+++... ...+. +.-+.+|+ .+.+|+++++| |+|+|......+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1222111 01222 22344444 45999999999 99999876655554443
No 299
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=6.2e-08 Score=115.01 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=79.1
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCC-CCCCCHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIH-SPLVTVYE 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~-~~~lTv~E 971 (1436)
.+|+++++.+++|++++|.||||||||||+++|+|.. .|.+..-..+. ..+...+|+++|..++ +..++...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4799999999999999999999999999999999853 34554411111 1112235666665432 22222211
Q ss_pred HHHHhhhhc-CCCCCCHHHHHHHHHHHHHH---cCCCc-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 972 SLLYSAWLR-LPPEVDSETRKMFIEEIMEL---VELNP-LR---QSLV--G--LPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 972 ~l~f~a~lr-~~~~~~~~~~~~~v~~~l~~---l~L~~-~~---~~~v--g--~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
.+ .| .... ........+...++- +.+.. .. +.+. | ......+++|.++|+..+++++.+|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 11 1000 110001122333320 00110 00 1110 0 001245889999999998888889998
Q ss_pred ce-ecCCCC
Q 038815 1040 IF-MDEPTS 1047 (1436)
Q Consensus 1040 l~-lDEPTs 1047 (1436)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 75 999997
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.95 E-value=4e-07 Score=98.74 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHHHh
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGEMTVRETLAF 262 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 262 (1436)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 78899987764321 11235778887666666677777654
Q ss_pred h
Q 038815 263 S 263 (1436)
Q Consensus 263 ~ 263 (1436)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.92 E-value=2.7e-06 Score=94.29 Aligned_cols=39 Identities=31% Similarity=0.237 Sum_probs=22.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH-CCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 930 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La-g~~~ 930 (1436)
.+..+++|+.+++|++++|+||||||||||+++|+ |...
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35789999999999999999999999999999999 8753
No 302
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.92 E-value=2.8e-06 Score=98.22 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=36.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.|
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D 141 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAAD 141 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccc
Confidence 4446789999999999999999999999998764 6778776543
No 303
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.92 E-value=7.5e-06 Score=96.52 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999888886543
No 304
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.91 E-value=2.4e-06 Score=100.47 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.8
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999874
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.80 E-value=1e-06 Score=95.56 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=31.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
...++|++++|+||||||||||+++|++.. |.+.++|...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 455789999999999999999999999853 6678887543
No 306
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.78 E-value=1.9e-05 Score=92.26 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+.+.+-++||+++.|.|++|+|||||+.-++.... . .| ..+.|+. ..++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEe------CCCCHHHHH
Confidence 4677777899999999999999999999988875321 0 11 1123322 113333222
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
.+.......+.+.++.+ ..||.+|.+|++.|...+.++++.+.|+|+..+
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si---- 140 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI---- 140 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----
Confidence 11111111222222222 249999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHc--CCEEEEEe
Q 038815 1054 AAIVMRTVKNTVET--GRTVVCTI 1075 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~--g~tvi~t~ 1075 (1436)
..|...++++.+. |..+|++=
T Consensus 141 -~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 141 -EQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEe
Confidence 3566666666543 56777774
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=9.1e-06 Score=86.33 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=33.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987654
No 308
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.73 E-value=4.5e-06 Score=97.14 Aligned_cols=81 Identities=14% Similarity=0.036 Sum_probs=62.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------c---cceEEEE-cC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------P---QRVAAYI-SQ 246 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~---~~~~~yv-~Q 246 (1436)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.|..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789999887763211 0 3457888 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 038815 247 HDNHIGEMTVRETLAFS 263 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~ 263 (1436)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 76666666778887664
No 309
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.72 E-value=8.7e-07 Score=97.84 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.5
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-----------ccccceEEEeccC
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-----------ETFTRISGYCEQN 960 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 960 (1436)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 89999999999999999999996542 35778888765411 1234568898884
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.72 E-value=5.8e-05 Score=86.89 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=39.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCc
Confidence 677887 99999999999999999999999998764 78888877653
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.72 E-value=1.1e-05 Score=87.28 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
++++|++++|+||||||||||++.|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
No 312
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.68 E-value=4.3e-05 Score=90.50 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceec-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVKNTVETGRTVVCTI--HQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~--Hqps 1079 (1436)
..+|++|++++. +.+..+++-++++| +|++|+|......+.+.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 458999998876 55555677788999 99999999988888887776544 67788888 7754
No 313
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.66 E-value=3e-05 Score=91.85 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-------C-CcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH---HHHH
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSS-------L-KVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR---ETLA 261 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~-------~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 261 (1436)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. ...+.|++.|.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986410 0 24789999886431 112345544422 11221 1221
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
.......+-.-++. .+++ .. ..+....+..+++.+++.+..-..|+|+ +.-+|+|+
T Consensus 254 ~~~~aD~il~VvD~--------------s~~~-~~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVIDS--------------TFSE-NL--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEET--------------TSCH-HH--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEEC--------------CCCc-ch--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 11000000000000 0000 00 0011122456678888765543445554 33478888
Q ss_pred HHHHhhhhhhh--h-he--e-CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 342 KRRVTTGPALA--L-FM--D-EISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 342 rkRvsia~a~v--l-ll--D-EptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
++|+.++.... + .- + +|+|++|.....++.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 88877652111 1 10 1 89999999999999998887654
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.66 E-value=1.1e-05 Score=86.23 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.62 E-value=2.9e-06 Score=91.93 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=42.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE--EEcCccCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRV--TYNGHNMD 233 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I--~~~G~~~~ 233 (1436)
..+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 3445566667778999999999999999999999999985 2 6777 78876543
No 316
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=1.7e-05 Score=85.67 Aligned_cols=40 Identities=28% Similarity=0.057 Sum_probs=25.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+...+++|||+.+++|+.++|+|+|||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999876
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.59 E-value=5.3e-06 Score=93.37 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=45.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEE--------EcCccCCCCC----ccceEEE
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA---GKLDSSLKVSGRVT--------YNGHNMDEFE----PQRVAAY 243 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~La---G~~~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~y 243 (1436)
.++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 887766 89998 8888764321 1245667
Q ss_pred EcCC
Q 038815 244 ISQH 247 (1436)
Q Consensus 244 v~Q~ 247 (1436)
++|.
T Consensus 92 ~~~~ 95 (252)
T 4e22_A 92 RFVS 95 (252)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7764
No 318
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.50 E-value=8.1e-06 Score=91.58 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.3
Q ss_pred eeEEece-eeeeecccchhhcccccCceEEeeceEeeEeC---CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 866 SLTFDEV-VYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 866 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.++|+ ++.++ +...+|+|+|+.+++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4677787 66541 124589999999999 9999999999999999999999753
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=3.7e-05 Score=81.69 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEc
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYN 228 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~ 228 (1436)
+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987532 35666544
No 320
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.46 E-value=5.3e-05 Score=98.50 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCT-IHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t-~Hqps~~if~~FD~ 1088 (1436)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++ .++-+.|++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 3478999999999999999999999999996 999887777776666554445677775 7754 566667775
No 321
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.44 E-value=1e-05 Score=90.78 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=36.7
Q ss_pred ccceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 176 KHLTILKDVSGIIRP---GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~---Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
...++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999 99999999999999999999999753
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=1.9e-06 Score=105.88 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=79.4
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCC-CCCCCCH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDI-HSPLVTV 969 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~-~~~~lTv 969 (1436)
+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|...... ...+.+++++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 578889999999 89999999999999999998653 35677887543211 01122344555432 3444555
Q ss_pred HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 970 YESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 970 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
.|.+..-...+.. .....++..+.+++++. .+||||+++..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555322111110 00112333444555543 2678888888888888888887 788764
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=5.2e-05 Score=81.85 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...++|||+.+++|++++|+|++||||||+.+.|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999753
No 324
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.40 E-value=0.00022 Score=84.87 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=35.3
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCC
Q 038815 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE---TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~t~Hqps 1079 (1436)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45779999999876 88888888888876655 5778999999874
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.36 E-value=7.9e-05 Score=79.00 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.5
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999874
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=4.7e-05 Score=97.38 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=25.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+++|..++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45778999999999999999999999964
No 327
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.33 E-value=1.7e-05 Score=90.57 Aligned_cols=48 Identities=33% Similarity=0.532 Sum_probs=42.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 35789999999999 99999999999999999999874 68999988764
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.33 E-value=6.6e-05 Score=83.10 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=33.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..++|++++|.|++|||||||+++|+|. .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3468999999999999999999999997 57888887754
No 329
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.32 E-value=3.1e-05 Score=86.96 Aligned_cols=48 Identities=33% Similarity=0.532 Sum_probs=42.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 35789999999999 99999999999999999999874 68888888654
No 330
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.28 E-value=0.00066 Score=78.31 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=83.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+++| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++... ++.+ .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 8999999999999999999996420 0 11211 123345667777764321 1101 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC--cccccccC-CCCCCCCCHHHHHHHHHHHHHh--hCCCcceecCCCCCCCHHH-HH
Q 038815 982 PPEVDSETRKMFIEEIMELVELN--PLRQSLVG-LPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AA 1055 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg-~~~~~~lSgGqrkRl~ia~~L~--~~p~il~lDEPTsgLD~~~-~~ 1055 (1436)
|.. ..+.+ ...++.+...-.. ...|..+= .+... +|.|++ .++..+. ..|.++++ +.+|... ..
T Consensus 64 pG~-~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 64 PGL-HMEEK-RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp SSC-CHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred cCC-Cccch-hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 111 10000 0111111000000 11111110 01123 899887 4566666 67888888 7888876 56
Q ss_pred HHHHHHHHHHHc-CC--EEEEEecCCCHHHHHHhhhhcC
Q 038815 1056 IVMRTVKNTVET-GR--TVVCTIHQPSIDIFESFDEAIP 1091 (1436)
Q Consensus 1056 ~i~~~l~~~~~~-g~--tvi~t~Hqps~~if~~FD~~~~ 1091 (1436)
.+.+.++++++. |. .+.+++|+- ..+-+++|....
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~~ 171 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHHH
Confidence 777888887764 43 555566653 456677777443
No 331
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00063 Score=79.98 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=26.7
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999988863
No 332
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.27 E-value=0.00019 Score=83.32 Aligned_cols=130 Identities=11% Similarity=0.138 Sum_probs=79.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+++.+-++||+++.|.|++|+|||||+.-++..... +| ..+.|+.= .++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 57777788999999999999999999998888742100 01 11233321 13333322
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
. +.......+.+.++.+ | ...||.+|++|+..|...+.++++.+.|+|+..
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred H------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 1 1111111111111211 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHc-CCE--EEEEec
Q 038815 1054 AAIVMRTVKNTVET-GRT--VVCTIH 1076 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~-g~t--vi~t~H 1076 (1436)
...|...++++.++ |.. +|++=|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34456666666543 666 777644
No 333
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.26 E-value=0.00045 Score=81.80 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=27.0
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+|+++++.++ .++|+|++|||||||++.|+|..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 47888888888 89999999999999999999953
No 334
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.26 E-value=3.5e-05 Score=91.38 Aligned_cols=44 Identities=34% Similarity=0.295 Sum_probs=39.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY 227 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~ 227 (1436)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999964 577765
No 335
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00011 Score=78.05 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=29.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS 941 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~ 941 (1436)
.+|++++|+||||||||||++.|++.... ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 36899999999999999999999986532 134555443
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.24 E-value=0.00012 Score=79.11 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++|++++|+||||||||||++.|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999976
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.23 E-value=9.3e-05 Score=79.02 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999654
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.21 E-value=3.1e-05 Score=87.04 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=43.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---CCCCCCeeEEEEE--------EcCeeccc----ccccceEEEeccCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSIT--------ISGYLKKQ----ETFTRISGYCEQND 961 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~La---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~d 961 (1436)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7543 4567777 77765422 23455678888653
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.21 E-value=5.6e-05 Score=83.72 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=35.2
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
+-++..++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34456689999999999999999999999986 25677777653
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.21 E-value=0.00015 Score=78.90 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.20 E-value=7.9e-05 Score=80.65 Aligned_cols=41 Identities=24% Similarity=0.101 Sum_probs=34.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988654 6777776554
No 342
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.00074 Score=78.73 Aligned_cols=139 Identities=20% Similarity=0.198 Sum_probs=75.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
+-+++|+++.|.||+|+|||||...++.........| |. ...+.|+.-+..+ ...+-......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 6799999999999999999999998875321000000 00 0122333322211 111111111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHh---hCCCcceecCCCCCCCH----
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA---- 1051 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG-qrkRl~ia~~L~---~~p~il~lDEPTsgLD~---- 1051 (1436)
. .+. +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 111 1222211 111 123444 346677788887 56899999999986532
Q ss_pred ----H----HHHHHHHHHHHHHHc-CCEEEEEecC
Q 038815 1052 ----R----AAAIVMRTVKNTVET-GRTVVCTIHQ 1077 (1436)
Q Consensus 1052 ----~----~~~~i~~~l~~~~~~-g~tvi~t~Hq 1077 (1436)
. ....+++.|+++++. |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 1 124556666666654 8888888664
No 343
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00012 Score=77.00 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999864 6677776543
No 344
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.17 E-value=5.9e-05 Score=87.73 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=38.1
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 34789999999999999999999999999999985321 13566666544
No 345
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.00033 Score=85.57 Aligned_cols=34 Identities=38% Similarity=0.660 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 456667777777 8899999999999999999964
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00016 Score=77.83 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999865
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.08 E-value=0.00027 Score=76.55 Aligned_cols=44 Identities=32% Similarity=0.194 Sum_probs=36.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 253 (1436)
.+++|++++|+|+||||||||.+.|++.++ .+.+++|++.+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 356799999999999999999999999863 15788888766543
No 348
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=7.5e-05 Score=80.67 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEE--EEcCee
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSI--TISGYL 944 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i--~i~g~~ 944 (1436)
...+.++...++|++++|+||||||||||.+.|+++.. ..|.+ .++|..
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 34566677778999999999999999999999998642 12444 777643
No 349
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.07 E-value=0.00027 Score=75.52 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-----C---CcccEEEEcCccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSS-----L---KVSGRVTYNGHNM 232 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~-----~---~~~G~I~~~G~~~ 232 (1436)
.++|+|+||||||||++.|+|...+. . ..+|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 68999999999999999999986541 0 0378999998653
No 350
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.04 E-value=0.0012 Score=75.79 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH----------HHHHHHHHHHHHH----cCCEEEEEecCCC---HHH
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARA----------AAIVMRTVKNTVE----TGRTVVCTIHQPS---IDI 1082 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~----------~~~i~~~l~~~~~----~g~tvi~t~Hqps---~~i 1082 (1436)
+++++.|..++.+...+|.+||+||+.+-++... ...++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3567777777888888999999999987765322 2233333333211 2346788898873 344
Q ss_pred HHHhhh
Q 038815 1083 FESFDE 1088 (1436)
Q Consensus 1083 f~~FD~ 1088 (1436)
...||.
T Consensus 177 ~~R~~~ 182 (297)
T 3b9p_A 177 LRRFTK 182 (297)
T ss_dssp HHHCCE
T ss_pred HhhCCe
Confidence 444544
No 351
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.99 E-value=0.00028 Score=76.70 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.97 E-value=0.00042 Score=75.07 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-.+++|++++|+|+||||||||.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999864
No 353
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.93 E-value=0.00014 Score=90.49 Aligned_cols=42 Identities=36% Similarity=0.436 Sum_probs=36.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEE-EcCcc
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-RVT-YNGHN 231 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~I~-~~G~~ 231 (1436)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 46799999999999999999999999999875 55 675 77754
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=7.5e-05 Score=86.60 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
No 355
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.84 E-value=0.00033 Score=85.28 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=38.3
Q ss_pred hCCCcceecCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1035 ANPSIIFMDEPTSGLDA-RAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
.+|++||+||+..-.+. .+...+..++..+.+.|+.||+++|.|..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 38999999999887764 67778888888887788999999998654
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.84 E-value=0.00037 Score=72.93 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.81 E-value=0.00062 Score=69.96 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=24.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+.+..+.+| +++|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.80 E-value=0.00055 Score=79.86 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
..-|+.+.+-++||+++.|.|+||+|||||+..++...
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44577777779999999999999999999999988754
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.79 E-value=0.00068 Score=69.66 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.4
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
.+..+.+| +++|+|||||||||+|++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455566 99999999999999999986
No 360
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.75 E-value=0.00057 Score=73.52 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998643
No 361
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.73 E-value=0.00082 Score=87.39 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISN-GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEpts-gLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.-+|+|+.+|..++.+. ++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 335899999998875443 599999996 9998877777776654321 23455666677777777788753
No 362
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.73 E-value=0.0006 Score=73.19 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----CCC---CcccEEEEcCccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD-----SSL---KVSGRVTYNGHNM 232 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~-----~~~---~~~G~I~~~G~~~ 232 (1436)
.++|+|+||||||||++.|+|... |+. ..+|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 579999999999999999999753 221 1268899988653
No 363
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.66 E-value=0.00012 Score=86.16 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=42.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH 230 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 230 (1436)
...+++++++.+++|..++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 446788888888999999999999999999999999987653 566655443
No 364
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.65 E-value=0.00071 Score=71.04 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=29.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCc
Confidence 579999999999999999999999753 45666663
No 365
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0043 Score=73.21 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhh----hhhhhhhee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 038815 335 RGISGGQKRRVTT----GPALALFMD-EISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389 (1436)
Q Consensus 335 rgLSGGqrkRvsi----a~a~vlllD-EptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~ 389 (1436)
..+|+||+|++.- +.+.++++| ++..|+|......+++.++.... +..+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 3589999888753 334468999 99999999988888877776432 44555543
No 366
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.58 E-value=0.00055 Score=80.64 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=34.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987664 67787766554
No 367
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0005 Score=81.42 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.50 E-value=0.00072 Score=83.05 Aligned_cols=48 Identities=33% Similarity=0.528 Sum_probs=42.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 233 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 233 (1436)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~ 101 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFV 101 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHH
Confidence 4688999999999 99999999999999999999874 678889887653
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.49 E-value=0.00093 Score=69.85 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 370
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.49 E-value=0.00083 Score=85.88 Aligned_cols=47 Identities=32% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 234 (1436)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 456789999999999999999999999765431 236777 56655433
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.47 E-value=0.00067 Score=71.63 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=31.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG--RVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~~ 232 (1436)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998743 34 566665443
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.46 E-value=0.0029 Score=66.15 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
No 373
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.45 E-value=0.0021 Score=74.02 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++++.-+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999854
No 374
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.43 E-value=0.0017 Score=84.93 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.8
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
+.+++|+.++|.||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999999999753
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.35 E-value=0.0011 Score=73.13 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.3
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 180 ILKDVSGIIR---PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 180 iL~~vs~~i~---~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
=|.++|+.+. +|.+++|.|+|||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677777776 899999999999999999999999875
No 376
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.34 E-value=0.00029 Score=87.97 Aligned_cols=48 Identities=27% Similarity=0.480 Sum_probs=39.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34566777766 89999999999999999999999998664 67776665
No 377
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.33 E-value=0.0029 Score=66.20 Aligned_cols=27 Identities=41% Similarity=0.671 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
No 378
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.33 E-value=0.00031 Score=83.16 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=38.4
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
+.....+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.+...........+..|.+...
T Consensus 24 ~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~ 94 (361)
T 2qag_A 24 PNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVK 94 (361)
T ss_dssp HHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEE
T ss_pred hHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcc
Confidence 33344556788888877 999999999999999998874432 444433333221110011223444443333
Q ss_pred CCCCHHHHHHh
Q 038815 252 GEMTVRETLAF 262 (1436)
Q Consensus 252 ~~lTV~E~l~f 262 (1436)
..+++.+|.-+
T Consensus 95 ~~l~i~DTpG~ 105 (361)
T 2qag_A 95 LRLTVVDTPGY 105 (361)
T ss_dssp EEEEEEC----
T ss_pred cceEEEEeccc
Confidence 34555555544
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.33 E-value=0.0039 Score=75.06 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
No 380
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0015 Score=70.54 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
No 381
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.30 E-value=0.0028 Score=77.03 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC------C---CCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCCCCCHHHH
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDS------S---LKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~------~---~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
-.++|+|+||+|||||++.|+|.... . ...+|.+.++|.++.-.+ .++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 024789999997642221 12223333344334444445555
Q ss_pred HHh
Q 038815 260 LAF 262 (1436)
Q Consensus 260 l~f 262 (1436)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 382
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.28 E-value=0.00095 Score=78.08 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
No 383
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.00039 Score=76.28 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY 227 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~ 227 (1436)
+..++|+|||||||||+.+.|++.+.-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876211112677665
No 384
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.25 E-value=0.009 Score=70.74 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.8
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 190 PGS--MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 190 ~Ge--~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++. .++|.||||+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998765
No 385
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.23 E-value=0.00081 Score=77.91 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.7
Q ss_pred eEEeeceEeeEeCCc------EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge------~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|++++..+..++ ++||+||||||||||+++|++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777777666 99999999999999999999853
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0086 Score=66.12 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
+.|.-.+.. ...+.+-+++++||.-. ++|......+++.+......-++++++.--|...+-+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 345544442 23477889999999965 7887776555555544433345777776666665555554
No 387
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.15 E-value=0.007 Score=73.63 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=74.7
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+.+.+-++||+++.|.|++|+|||||..-++...... .| ..+.|+.= .++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g---------~~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--------EG---------VGVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TC---------CCEEEEES------SSCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CC---------CeEEEEEC------CCCHHHHH
Confidence 466777779999999999999999999988887532100 01 01223221 12222211
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHH-HcC--CCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIME-LVE--LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~-~l~--L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
..++. ..+ +..+.+ ..|+.++.+|+.-|...+.+.++.+.|+|.. +
T Consensus 246 ---------------------~R~~~~~~~i~~~~l~~--------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s 294 (444)
T 2q6t_A 246 ---------------------LRMMCSEARIDMNRVRL--------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T 294 (444)
T ss_dssp ---------------------HHHHHHHTTCCTTTCCG--------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B
T ss_pred ---------------------HHHHHHHcCCCHHHHhC--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C
Confidence 11111 122 222221 2489999999999998888888888887643 3
Q ss_pred HHHHHHHHHHHHHHHH-cCCEEEEE
Q 038815 1051 ARAAAIVMRTVKNTVE-TGRTVVCT 1074 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~-~g~tvi~t 1074 (1436)
. ..+...++++.+ .|..+|++
T Consensus 295 ~---~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 295 L---MEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp H---HHHHHHHHHHHHHSCCCEEEE
T ss_pred H---HHHHHHHHHHHHHcCCCEEEE
Confidence 3 344555666553 46666665
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.11 E-value=0.0029 Score=68.43 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.2
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
.++.+.|| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34455565 99999999999999999885
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.10 E-value=0.0013 Score=71.53 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=34.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEEcCcc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG--RVTYNGHN 231 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 231 (1436)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4578999999999999999999999988643 56 67776544
No 390
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.10 E-value=0.0045 Score=65.81 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=28.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC------CCCeeEEEEEEcCe
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGSITISGY 943 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~------~~~~~~G~i~i~g~ 943 (1436)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4788999888887 78999999999999999999742 22334566666663
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.003 Score=68.35 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=24.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+.++.+.+ .+++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34445555 4999999999999999999863
No 392
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.04 E-value=0.0036 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=21.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999888887 6699999999999999999984
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.02 E-value=0.0029 Score=69.81 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=25.8
Q ss_pred EeeceEeeEe---CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 894 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 894 iL~~vs~~i~---~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566666666 89999999999999999999999854
No 394
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.94 E-value=0.011 Score=68.46 Aligned_cols=47 Identities=4% Similarity=0.078 Sum_probs=35.2
Q ss_pred hhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1034 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1034 ~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
..++.+||+||+-. .-|..+...+...+..+.+.|..+|++++.|..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234467788888888877778888888876543
No 395
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.91 E-value=0.0026 Score=68.72 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
No 396
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.90 E-value=0.003 Score=67.02 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999976
No 397
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.89 E-value=0.018 Score=66.81 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.8
Q ss_pred eeceE-eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+- +-+++|+++.|.|++|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34433 6789999999999999999999988874
No 398
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.88 E-value=0.0015 Score=70.03 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=29.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46788888777775 689999999999999999874
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.83 E-value=0.0032 Score=66.41 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865322224777776654
No 400
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.83 E-value=0.0022 Score=79.72 Aligned_cols=42 Identities=38% Similarity=0.578 Sum_probs=32.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEE-EcCee
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SIT-ISGYL 944 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~-i~g~~ 944 (1436)
.+++|++++|+|+||||||||+++|+|+... ..| .+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999996532 123 564 77743
No 401
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.78 E-value=0.0023 Score=77.84 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=39.1
Q ss_pred hhhhhheeCCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-ecCCeEEEecCh
Q 038815 349 PALALFMDEISNGLDS-STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGLIVYLGPR 417 (1436)
Q Consensus 349 ~a~vlllDEptsgLDs-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil-L~~G~iv~~G~~ 417 (1436)
.+.+|++||+..-.+. .+...+...+..... .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 4568999999887764 566777788776543 4556666555444443222222221 334555544443
No 402
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.78 E-value=0.0069 Score=73.55 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
-|+.+.+-++||+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666789999999999999999999877764
No 403
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.033 Score=61.43 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=28.4
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEec
Q 038815 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE--TGRTVVCTIH 1076 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~t~H 1076 (1436)
.+++++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 36788888888888888666555555443322 1358888888
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.77 E-value=0.0061 Score=65.40 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
+..-+.|.||+|+|||||+++|+... .+.....-..+..+.+.--.......
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANEL----------------------------AKRNVSSLIVYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH----------------------------HTTTCCEEEEEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH----------------------------HHcCCeEEEEEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC--CCCCCHHHHHHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1061 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP--TsgLD~~~~~~i~~~l 1061 (1436)
.. .+.++.+ .++++|++||+ ...-|......+..++
T Consensus 105 ~~---------~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 TM---------NEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp CC---------HHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred hH---------HHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHHcCCEEEEEecCCCHHHHHHh
Q 038815 1062 KNTVETGRTVVCTIHQPSIDIFESF 1086 (1436)
Q Consensus 1062 ~~~~~~g~tvi~t~Hqps~~if~~F 1086 (1436)
......+..+|+|++.+..++.+.+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
No 405
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.77 E-value=0.0019 Score=75.84 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999999999999999974
No 406
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.75 E-value=0.0028 Score=67.25 Aligned_cols=29 Identities=41% Similarity=0.536 Sum_probs=26.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++|.++.|.|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999998754
No 407
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0041 Score=67.09 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999998754
No 408
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.72 E-value=0.0081 Score=72.95 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC----------CCeeEEEEEEcCee
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGSITISGYL 944 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~----------~~~~~G~i~i~g~~ 944 (1436)
.++|+|+||+|||||+|.|+|... .....|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 11346888999864
No 409
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.72 E-value=0.0044 Score=65.25 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999853
No 410
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.65 E-value=0.015 Score=68.37 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eeceE--eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs--~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 4689999999999999999999888775
No 411
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.64 E-value=0.0031 Score=74.54 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 412
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.62 E-value=0.0086 Score=67.91 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++.-+.|.||+|+|||||.++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999754
No 413
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.62 E-value=0.0033 Score=75.51 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=38.9
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.|.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999998765 67888766543
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.62 E-value=0.003 Score=70.80 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=32.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 345788999999999999999999999864 24566676543
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.61 E-value=0.0049 Score=67.38 Aligned_cols=56 Identities=20% Similarity=0.059 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEE--------cCeeccc----ccccceEEEeccC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITI--------SGYLKKQ----ETFTRISGYCEQN 960 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~ 960 (1436)
+.+++|+|||||||||+.+.|++.... -...|++.. +|.+... ....+..|++.|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975311 123455554 4543321 1233456676664
No 416
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.59 E-value=0.0043 Score=73.71 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345667888999999999999999999997
No 417
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.59 E-value=0.0054 Score=66.09 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
+++|+|||||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 418
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.56 E-value=0.0026 Score=79.49 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=38.2
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567777777 899999999999999999999998643 34577776664
No 419
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.54 E-value=0.0061 Score=64.60 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.3
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|+...+|..++|+|++||||||+.+.|+.+
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999965
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.53 E-value=0.0032 Score=67.53 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888888887 4799999999999999999874
No 421
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.48 E-value=0.014 Score=60.37 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 422
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.45 E-value=0.0012 Score=76.95 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.7
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 180 ILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++++++..+++|+. ++|+|+|||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56667777778877 99999999999999999999764
No 423
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.37 E-value=0.016 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 424
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.34 E-value=0.0067 Score=71.35 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|..++|+|++|||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 425
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.32 E-value=0.0079 Score=64.78 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+.|+.+|..++..+..+|..+.++ ++.+++.....+.+.++.. .+.+||+.+|.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~ 114 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPL 114 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTT
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 678899999999888888765443 2345555555554444322 35688888875
No 426
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.30 E-value=0.0067 Score=67.83 Aligned_cols=46 Identities=35% Similarity=0.619 Sum_probs=30.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
.++++++.+++| ++|.||||+|||||+++|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHH
Confidence 345555555555 8999999999999999999976421 355665443
No 427
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.30 E-value=0.0023 Score=73.43 Aligned_cols=44 Identities=25% Similarity=0.135 Sum_probs=36.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 184 VSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 184 vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 666666 9999999999999999999999998654 5677776554
No 428
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.28 E-value=0.0069 Score=65.07 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 429
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.21 E-value=0.009 Score=63.03 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+|..++|.|+|||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998653
No 430
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.15 E-value=0.0057 Score=71.61 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 431
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.14 E-value=0.01 Score=62.47 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 432
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.09 E-value=0.0074 Score=69.44 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999973
No 433
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.0027 Score=74.30 Aligned_cols=41 Identities=29% Similarity=0.601 Sum_probs=35.9
Q ss_pred cceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 177 HLTILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34578888888899998 999999999999999999998754
No 434
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.03 E-value=0.0028 Score=74.90 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34677888776 999999999999999998853
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.02 E-value=0.012 Score=60.92 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 436
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.97 E-value=0.01 Score=62.14 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 437
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.0036 Score=72.91 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.6
Q ss_pred EEeeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCC
Q 038815 893 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++.++..+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367888888999998 999999999999999999985
No 438
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.94 E-value=0.0098 Score=63.87 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 439
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.90 E-value=0.012 Score=69.84 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=26.5
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+-+.+..|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456778899999999999999999999986
No 440
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.0098 Score=63.87 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 441
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.82 E-value=0.025 Score=66.75 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999864
No 442
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.78 E-value=0.013 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997653
No 443
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.77 E-value=0.047 Score=64.31 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999753
No 444
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.014 Score=61.67 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...+|.+++|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999999753
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.71 E-value=0.011 Score=68.09 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=30.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
++++.-++|.||||+|||||.++|++... .+-+.+++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 82 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh
Confidence 46788999999999999999999999864 34555554
No 446
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.65 E-value=0.012 Score=63.62 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.7
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++|.+++|+|++||||||+.+.|++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999999754
No 447
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.58 E-value=0.015 Score=61.62 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++.++.|.|+|||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998754
No 448
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.53 E-value=0.016 Score=66.06 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467999999999999999999987653 24455554
No 449
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.50 E-value=0.014 Score=62.65 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999975
No 450
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.50 E-value=0.018 Score=60.81 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 451
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.44 E-value=0.018 Score=60.71 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+|.+++|+|++||||||+.+.|+.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 452
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.44 E-value=0.02 Score=59.77 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.41 E-value=0.018 Score=63.43 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999764
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.018 Score=60.67 Aligned_cols=38 Identities=34% Similarity=0.331 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCC-CCeeEEEEEEcCe
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGSITISGY 943 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~-~~~~~G~i~i~g~ 943 (1436)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 1223466666553
No 455
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.37 E-value=0.033 Score=60.98 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhhhhcCCcccCCCCCCccchh
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH---------QPSIDIFESFDEAIPGVQKIKDGCNPATWM 1106 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H---------qps~~if~~FD~~~~g~~~~~~~~NPAd~~ 1106 (1436)
+++++++||.-. |+. .+++.++.+++.|.+||++-| .++.++.+.-|....--.-|..-.+||.+-
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~ 163 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHS 163 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEE
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCcccee
Confidence 489999999964 654 355666777777999999999 567788888887332111244334566665
Q ss_pred hhcc
Q 038815 1107 LEVT 1110 (1436)
Q Consensus 1107 l~v~ 1110 (1436)
..+.
T Consensus 164 ~r~~ 167 (223)
T 2b8t_A 164 LRKI 167 (223)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
No 456
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.33 E-value=0.019 Score=60.51 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.33 E-value=0.019 Score=63.44 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999864
No 458
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.28 E-value=0.021 Score=59.11 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.27 E-value=0.021 Score=60.15 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 460
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.22 E-value=0.023 Score=60.80 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 461
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.17 E-value=0.022 Score=58.86 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 038815 193 MTLLLGPPSSGKTTLLLAL 211 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~L 211 (1436)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 462
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.14 E-value=0.023 Score=59.79 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999998764
No 463
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.14 E-value=0.026 Score=60.66 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987653
No 464
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.11 E-value=0.025 Score=59.00 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038815 192 SMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG 213 (1436)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 465
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.07 E-value=0.051 Score=62.42 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
|+.+-+-+.+|..+.|.||+|+|||||...++.. .|..---+.......
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~----------------------------- 161 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEP----------------------------- 161 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCS-----------------------------
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhh-----------------------------
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
+..++.+..+.+...+..+.+.+++++||-++=-.....
T Consensus 162 -----------------------------------------v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 162 -----------------------------------------LSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGG 200 (331)
T ss_dssp -----------------------------------------STTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-----
T ss_pred -----------------------------------------hhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccccc
Q ss_pred --------HHHHHHHHHH----HHcCCEEEEEecCCCHH
Q 038815 1055 --------AIVMRTVKNT----VETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1055 --------~~i~~~l~~~----~~~g~tvi~t~Hqps~~ 1081 (1436)
..+.+.++++ .+.|.|+|++++..+.+
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s~d 239 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSND 239 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSSCS
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcccc
No 466
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.02 E-value=0.15 Score=62.84 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.6
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+.+-+++|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455555689999999999999999999877764
No 467
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.00 E-value=0.025 Score=62.30 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999954
No 468
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.00 E-value=0.024 Score=63.39 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++|+||||||||||-+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.99 E-value=0.18 Score=58.27 Aligned_cols=105 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP 982 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~ 982 (1436)
.|..-+.|.||+|+|||||.++++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC-------CCCCCHHHHH
Q 038815 983 PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1055 (1436)
Q Consensus 983 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP-------TsgLD~~~~~ 1055 (1436)
.+....+|.. .+.-|-.+..+-..+|.|||+||. ..+.......
T Consensus 81 ----------------------~l~~~~~g~~-------~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLGES-------EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCCSC-------HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhhHH-------HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HHcCCEEEEEecCC
Q 038815 1056 IVMRTVKNT-----VETGRTVVCTIHQP 1078 (1436)
Q Consensus 1056 ~i~~~l~~~-----~~~g~tvi~t~Hqp 1078 (1436)
.+-+.+..+ ...+..||+++..|
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCc
No 470
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.97 E-value=0.023 Score=59.66 Aligned_cols=26 Identities=46% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+..++|.|+|||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998554
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.96 E-value=0.017 Score=75.56 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.+++|+-++|.||||||||||+++|+|.+..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999998753
No 472
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.94 E-value=0.026 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997643
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.90 E-value=0.025 Score=62.35 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999974
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.0064 Score=71.12 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=32.6
Q ss_pred EEeeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCCC
Q 038815 893 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888889988 9999999999999999999853
No 475
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.87 E-value=0.019 Score=64.15 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+++|+||||||||||-+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999754
No 476
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.85 E-value=0.03 Score=58.99 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+|.++.|.|++||||||+.+.|+.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
No 477
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.83 E-value=0.027 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998754
No 478
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.82 E-value=0.029 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 479
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.81 E-value=0.029 Score=59.36 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999853
No 480
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.80 E-value=0.021 Score=63.70 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.3
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++++++...+| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 34444555555 8899999999999999999753
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.80 E-value=0.097 Score=61.68 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
+++|+++.|.|++|+|||||...++. ...++.+ ++++..........+..|.-.++-......|+.+.+.....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC----------
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL---------- 1049 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL---------- 1049 (1436)
.... +++++++|..++=.
T Consensus 148 ~~~~----------------------------------------------------~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 148 VRSG----------------------------------------------------AIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp HTTT----------------------------------------------------CCSEEEEECTTTCCCSTTC-----
T ss_pred HhcC----------------------------------------------------CCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCEEEEEec
Q 038815 1050 DA---RAAAIVMRTVKNT----VETGRTVVCTIH 1076 (1436)
Q Consensus 1050 D~---~~~~~i~~~l~~~----~~~g~tvi~t~H 1076 (1436)
|. ..++.+.+.++++ .+.+.+||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 482
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.72 E-value=0.026 Score=60.02 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999987654
No 483
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.67 E-value=0.038 Score=64.73 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+-+++|+++.|.||||||||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999875
No 484
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.66 E-value=0.033 Score=60.59 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998764
No 485
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.66 E-value=0.032 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998753
No 486
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.63 E-value=0.036 Score=61.10 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997653
No 487
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.036 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
No 488
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.56 E-value=0.032 Score=58.28 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 489
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.55 E-value=0.033 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999764
No 490
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.54 E-value=0.024 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987643
No 491
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.51 E-value=0.036 Score=60.16 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhc
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 492
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.48 E-value=0.047 Score=64.15 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|-.++|+|.||+|||||+++|+|..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
No 493
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.43 E-value=0.018 Score=64.39 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g 942 (1436)
..+++.++.|+|+|||||||+.+.|+.+... +.+.++|
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEec
Confidence 4567889999999999999999999976432 2355565
No 494
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.35 E-value=0.038 Score=58.24 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998654
No 495
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.31 E-value=0.097 Score=72.41 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
=+++|++++|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999988653
No 496
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.31 E-value=0.042 Score=57.80 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++..+.|+|++||||||+.+.|+.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 497
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.31 E-value=0.034 Score=62.68 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|+||||||||++.|+|.
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
No 498
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.25 E-value=0.096 Score=52.88 Aligned_cols=44 Identities=2% Similarity=0.053 Sum_probs=31.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
+..+||+||.- .|+......+.+.+.+..+.+..+|++++.+..
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYAAG 118 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHH
Confidence 45689999975 577777788888777653345677777776533
No 499
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.18 E-value=0.032 Score=59.26 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998764
No 500
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.18 E-value=0.047 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+|.+++|.|++||||||+.+.|+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999764
Done!