BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038817
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/302 (74%), Positives = 253/302 (83%), Gaps = 2/302 (0%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
+V +GLA LGYQY+N+DDCWAE +RDS GNFVP FP+GIKALADYVHAKGLKLGIYS
Sbjct: 35 LVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYS 94
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG 120
DAG+QTCS MPGSL HEEQD KTFASWGVDYLKYDNC + G S ERY MS A+ G
Sbjct: 95 DAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYG 154
Query: 121 RPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYND 180
+ IFFSLCEWG+E+PATWA ++GNSWRTTGDI DNW SMTS AD+ND+WA+YAGPGG+ND
Sbjct: 155 KNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWND 214
Query: 181 PDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIAVNQDKL 240
PDMLEVGNGGM+ EYR+HFSIWALAKAPLLIGCD+R+M + T NILSN EVIAVNQD L
Sbjct: 215 PDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSL 274
Query: 241 GVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDIGLKLNHSTVVNARD 300
GVQGKKV+ + LEVWAGPLS NR AVVLWNR S +AT+TA+WS+IGL S V ARD
Sbjct: 275 GVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLA--GSVAVTARD 332
Query: 301 LW 302
LW
Sbjct: 333 LW 334
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 199/332 (59%), Gaps = 30/332 (9%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
+ +SGL LGY Y+ +DDCW + R+S+ + + FP GIK L D +H GLK GIYS
Sbjct: 35 IASSGLKDLGYNYVIIDDCWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKAGIYS 94
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTS--PK---ERYPIMSKA 115
AGT TC + SLG+E+ DAKT+A WG+DYLKYDNC+N G S PK +RY M A
Sbjct: 95 SAGTLTCGGHI-ASLGYEDIDAKTWAKWGIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNA 153
Query: 116 LLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN------------------ 157
L +GRP+ +SLC WG + P +A I NSWR +GD+ DN+N
Sbjct: 154 LNKTGRPMLYSLCNWGEDGPWNFASTISNSWRISGDVYDNFNRPDPACPCTTYDCVLAGF 213
Query: 158 --SMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCD 215
S+ ++ ++ + A GG+ND DMLEVGNGGM EEYR H++IWA K+PL++G D
Sbjct: 214 RCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQEEYRVHYTIWAALKSPLILGND 273
Query: 216 IRAMDKITFNILSNKEVIAVNQDKLGVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNRGSS 275
+ + T I+ NKEVIAVNQD ++ +GD ++++G L+ N V+L N G S
Sbjct: 274 VTNITNTTKEIIMNKEVIAVNQDSSFSPANRIWVKGDQQLFSGNLANNTQVVILLNAGDS 333
Query: 276 KATVTANWSDIGL----KLNHSTVVNARDLWQ 303
A +TA W DI + ++ S + RDLW+
Sbjct: 334 AAKMTATWDDIWVYNLPNVDSSRSIEVRDLWK 365
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 175/284 (61%), Gaps = 13/284 (4%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
+ G LGY+YIN+DDCWA RD+ G VP FP GIKALADYVHA+GLKLGIY
Sbjct: 45 IAEDGWRELGYKYINIDDCWAAKQRDAEGRLVPDPERFPRGIKALADYVHARGLKLGIYG 104
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG 120
D G TC +L EQDA+TFA WGVD LK D C+++G + YP M++AL +G
Sbjct: 105 DLGRLTCGGYPGTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATG 164
Query: 121 RPIFFSLCEW----GREDPA---TWAPKIGNSWRTTGDIKDNWNSMTSLAD----QNDKW 169
RPI +S C W G P T +I N WR DI+D+W+S+ S+ D D
Sbjct: 165 RPIVYS-CSWPAYQGGLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVL 223
Query: 170 ASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229
+AGPG +NDPDML +GN G++ E+ R+ ++W + APLL+ D+R + IL N
Sbjct: 224 QPFAGPGHWNDPDMLIIGNFGLSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQN 283
Query: 230 KEVIAVNQDKLGVQGKKVKKEGD-LEVWAGPLSGNRVAVVLWNR 272
+ +I +NQD LG+QG+++ KEG +EV+ PLS A+V ++R
Sbjct: 284 RLMIQINQDPLGIQGRRIIKEGSHIEVFLRPLSQAASALVFFSR 327
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 169/283 (59%), Gaps = 13/283 (4%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
MV+ G GY+Y+ +DDCW RDS G FP GI+ LA+YVH+KGLKLGIY+
Sbjct: 45 MVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYA 104
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF-NTGTSPKERYPIMSKALLNS 119
D G +TC+ PGS G+ + DA+TFA WGVD LK+D C+ ++ + + Y MS AL +
Sbjct: 105 DVGNKTCA-GFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRT 163
Query: 120 GRPIFFSLCEWG------REDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD----QNDKW 169
GR I +S CEW ++ T + N WR DI D+W S+ S+ D ++
Sbjct: 164 GRSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERI 222
Query: 170 ASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229
AGPGG+NDPDML +GN G++ + ++WA+ APL + D+R + +L +
Sbjct: 223 VDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQD 282
Query: 230 KEVIAVNQDKLGVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNR 272
K+VIA+NQD LG QG ++++ + EVW PLSG AV + NR
Sbjct: 283 KDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINR 325
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 179/324 (55%), Gaps = 26/324 (8%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
V +GL A GY YIN+D+ W + RDS GN + +P G+ A+ Y+H+KGLK GIY+
Sbjct: 38 FVAAGLPAAGYTYINIDEGWWQGTRDSAGNITVDTAEWPGGMSAITAYIHSKGLKAGIYT 97
Query: 61 DAGTQTCSKTMP---------GSLGHEEQDAKTFASWGVDYLKYDNC------FNTGTSP 105
DAG C P GS GH +QD F++WG D++K D C + T+
Sbjct: 98 DAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQFSTWGFDFVKVDWCGGDAEGLDAATTY 157
Query: 106 KERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDI--KDNWNSMTSLA 163
K + +A +GRP+ S+C WG ++P WA WRT+ DI N SMTSL
Sbjct: 158 KSISDAVGRAAATTGRPLTLSICNWGYQNPWNWAAGQAPLWRTSTDIIYYGNQPSMTSLL 217
Query: 164 DQNDK--WASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDK 221
D+ + G YNDPDML VG G T + R H ++WA++ APLL G D+ M
Sbjct: 218 SNFDQTLHPTAQHTGYYNDPDMLMVGMDGFTAAQNRTHMNLWAISGAPLLAGNDLTTMTS 277
Query: 222 ITFNILSNKEVIAVNQDKLGVQGKKVKKEGD-LEVWAGPLS--GNRVAVVLWNRGSSKAT 278
T IL N EVIAV+QD G+QG KV ++ L+ + LS GNR AVVL NR S+
Sbjct: 278 ETAGILKNPEVIAVDQDSRGLQGVKVAEDTTGLQAYGKVLSGTGNR-AVVLLNRTSAAHD 336
Query: 279 VTANWSDIGLKLNHSTVVNARDLW 302
+T WSD+GL +TV RDLW
Sbjct: 337 ITVRWSDLGLTNASATV---RDLW 357
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 179/324 (55%), Gaps = 39/324 (12%)
Query: 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGT 64
GL +GY+YI LDDCW+ RDS G V FP G+ +AD++H G+YS AG
Sbjct: 60 GLKDMGYKYIILDDCWSS-GRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGE 118
Query: 65 QTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT--SPK---ERYPIMSKALLNS 119
TC+ PGSLG EE+DA+ FA+ VDYLKYDNC+N G +P+ RY MS AL +
Sbjct: 119 YTCAG-YPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKT 177
Query: 120 GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLA----DQND-KWASY-- 172
GRP+F+SLC WG++ W I NSWR +GD+ + S D+ D K+A +
Sbjct: 178 GRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHC 237
Query: 173 ---------------AGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIR 217
AG GG+ND D LEVG G +T +E +AHFS+WA+ K+PL+IG ++
Sbjct: 238 SIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVN 297
Query: 218 AMDKITFNILSNKEVIAVNQDKLGVQGKKVKK----------EGDLEVWAGPLSGNRVAV 267
+ +++I S VIA+NQD G+ +V + +G++++W+GPL V
Sbjct: 298 NLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVV 357
Query: 268 VLWNRGSSKATVTANWSDIGLKLN 291
L N GS + +I N
Sbjct: 358 ALLNGGSVSRPMNTTLEEIFFDSN 381
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 176/354 (49%), Gaps = 56/354 (15%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
+V+SGL GY Y+N+DDCW+ + G+ P A+ FP GI LA VHA GLKLGIYS
Sbjct: 38 IVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYS 97
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC---------------------- 98
AGT TC+ P SLG+E+ DA FA WGVDYLKYDNC
Sbjct: 98 TAGTATCAG-YPASLGYEDVDAADFADWGVDYLKYDNCNVPSDWQDEYVACNPDFVKTGP 156
Query: 99 ---FNTGTSPK--------------ERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPK 141
T P ER+ M AL I S+C WG+ D +W
Sbjct: 157 NGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSMCIWGQADVFSWGNS 216
Query: 142 IGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFS 201
G SWR + DI NW S+T + + N + G+ND DMLEVGNG +T E R HF+
Sbjct: 217 TGISWRMSDDISPNWGSVTRILNLNSFKLNSVDFWGHNDADMLEVGNGNLTAAETRTHFA 276
Query: 202 IWALAKAPLLIGCDIRAMDKITFNILSNKEVIAVNQDKLGVQGKKVKKEG---------- 251
+WA K+PLLIG D+ + + N+L NK ++A NQD + Q K G
Sbjct: 277 LWAAMKSPLLIGTDLAQLSQNNINLLKNKHLLAFNQDSVYGQPATPYKWGINPDWTFNVT 336
Query: 252 -DLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDI-GLKLNHSTVVNARDLWQ 303
E WAGP S + V++ N AT A W++I GL H V RD+W
Sbjct: 337 YPAEFWAGPSSKGHL-VLMVNTLDITATKEAKWNEIPGLSAGHYEV---RDVWS 386
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 168/287 (58%), Gaps = 21/287 (7%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
MV+ G GY+Y+ +DDCW RDS G FP GI+ LA+YVH+KGLKLGIY+
Sbjct: 45 MVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYA 104
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF-NTGTSPKERYPIMSKALLNS 119
D G +TC+ PGS G+ + DA+TFA WGVD LK+D C+ ++ + + Y MS AL +
Sbjct: 105 DVGNKTCAG-FPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRT 163
Query: 120 GRPIFFSLCEWGREDPATWAP----------KIGNSWRTTGDIKDNWNSMTSLAD----Q 165
GR I +S C W PA P + N WR DI D+W S+ S+ D
Sbjct: 164 GRSIVYS-CSW----PAYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFN 218
Query: 166 NDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFN 225
++ AGPGG+NDPDML +GN G++ + ++WA+ APL + D+R +
Sbjct: 219 QERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 278
Query: 226 ILSNKEVIAVNQDKLGVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNR 272
+L +K+VIA+NQD LG QG ++++ + EVW PLSG AV + NR
Sbjct: 279 LLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINR 325
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 177/316 (56%), Gaps = 19/316 (6%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
M G +GY Y+N+DDCW RD++G +P FP GI LADYVH+ GLKLGIY+
Sbjct: 45 MAQDGWRDMGYTYLNIDDCWIG-GRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYA 103
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG 120
D G TC +L QDA+TFA W VD LK D CF+T + YP M+ AL +G
Sbjct: 104 DMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATG 163
Query: 121 RPIFFSLCEW----GREDPA---TWAPKIGNSWRTTGDIKDNWNSMTSL----ADQNDKW 169
RPI FS C W G P + I N WR DI+D+W S+ S+ + D
Sbjct: 164 RPIAFS-CSWPAYEGGLPPRVQYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDIL 222
Query: 170 ASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229
AGPG +NDPDML +GN G++ E+ RA ++W + APLL+ D+R + +IL N
Sbjct: 223 QPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQN 282
Query: 230 KEVIAVNQDKLGVQGKKVKKEGDL-EVWAGPLSGNRVAVVLWNRGSSKATVTANW-SDIG 287
+I +NQD LG+QG+++ KE L EV+ PLS A+V + S + + + S +G
Sbjct: 283 PLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFF---SCRTDMPYRYHSSLG 339
Query: 288 -LKLNHSTVVNARDLW 302
L S + A+D++
Sbjct: 340 QLNFTGSVIYEAQDVY 355
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 168/283 (59%), Gaps = 13/283 (4%)
Query: 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYS 60
MV+ G GY+Y+ +DDCW RDS G FP GI+ LA+YVH+KGLKLGIY+
Sbjct: 45 MVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYA 104
Query: 61 DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF-NTGTSPKERYPIMSKALLNS 119
D G +TC+ PGS G+ + DA+TFA WGVD LK+ C+ ++ + + Y MS AL +
Sbjct: 105 DVGNKTCA-GFPGSFGYYDIDAQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRT 163
Query: 120 GRPIFFSLCEWG------REDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD----QNDKW 169
GR I +S CEW ++ T + N WR DI D+W S+ S+ D ++
Sbjct: 164 GRSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERI 222
Query: 170 ASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229
AGPGG+NDPDML +GN G++ + ++WA+ APL + D+R + +L +
Sbjct: 223 VDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQD 282
Query: 230 KEVIAVNQDKLGVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNR 272
K+VIA+NQD LG QG ++++ + EVW PLSG AV + NR
Sbjct: 283 KDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINR 325
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 178/324 (54%), Gaps = 39/324 (12%)
Query: 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGT 64
GL +GY+YI LDDCW+ RDS G V FP G+ +AD++H G+YS AG
Sbjct: 60 GLKDMGYKYIILDDCWSS-GRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGE 118
Query: 65 QTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT--SPK---ERYPIMSKALLNS 119
TC+ PGSLG EE+DA+ FA+ VDYLKY NC+N G +P+ RY MS AL +
Sbjct: 119 YTCAG-YPGSLGREEEDAQFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKT 177
Query: 120 GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLA----DQND-KWASY-- 172
GRP+F+SLC WG++ W I NSWR +GD+ + S D+ D K+A +
Sbjct: 178 GRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHC 237
Query: 173 ---------------AGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIR 217
AG GG+ND D LEVG G +T +E +AHFS+WA+ K+PL+IG ++
Sbjct: 238 SIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVN 297
Query: 218 AMDKITFNILSNKEVIAVNQDKLGVQGKKVKK----------EGDLEVWAGPLSGNRVAV 267
+ +++I S VIA+NQD G+ +V + +G++++W+GPL V
Sbjct: 298 NLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVV 357
Query: 268 VLWNRGSSKATVTANWSDIGLKLN 291
L N GS + +I N
Sbjct: 358 ALLNGGSVSRPMNTTLEEIFFDSN 381
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 141/354 (39%), Gaps = 75/354 (21%)
Query: 6 LAALGYQYINLDDCWAE-------------LNRDSTGNFVPKASAFP-----AGIKALAD 47
L G++YI +D W E L D G +P + FP AG K L+D
Sbjct: 42 LKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSD 101
Query: 48 YVHAKGLKLGIYSDAG---------------TQTCSK-------------------TMPG 73
+H GLK GI+ G T+T + T G
Sbjct: 102 AIHDLGLKFGIHIXRGIPRQAVYENSPVLGSTKTAREIAHTNSICPWNTDXYGVDPTKEG 161
Query: 74 SLGHEEQDAKTFASWGVDYLKYDNCFNTGT--SPKERYPIMSKALLNSGRPIFFSLCEWG 131
+ + + +A WGVD++K D+ + + E + +A+ GRP SL
Sbjct: 162 AQSYYNSLFELYAQWGVDFVKVDDIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSP-- 219
Query: 132 REDPATWAPKI---GNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGN 188
P +A N WR T D D+W+ + ++ + W + G G + D L +G+
Sbjct: 220 GPAPIKYAHHFKTNANXWRITDDFWDDWSLLYQXFERCEVWEKHIGTGHWPDCGXLPLGH 279
Query: 189 GGM--------------TTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIA 234
G+ T +E ++WA+ +PL G ++R D+ T ++L+N+ +++
Sbjct: 280 IGIRSVDGPGGDRWTRFTKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILS 339
Query: 235 VNQDKLGVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDIGL 288
+NQ V + V +E D WA V L+N + T+ +G+
Sbjct: 340 INQK--SVLNRFVYREEDKVAWAANGRNGEAYVALFNLHDQQKTLQFRLDXVGI 391
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 LGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLKLGI 58
LG + LDD W D S G++ FP G+ ADYVH +GLK G+
Sbjct: 362 LGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGL 414
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 LGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLKLGI 58
LG + LDD W D S G++ FP G+ ADYVH +GLK G+
Sbjct: 362 LGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGL 414
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 7 AALGYQYINLDDCW---AELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61
A LG + + LDD W + +R S G+++ P G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVE 413
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 7 AALGYQYINLDDCW---AELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61
A LG + + LDD W + +R S G+++ P G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVE 413
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 7 AALGYQYINLDDCW---AELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61
A LG + + LDD W + +R S G+++ P G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVE 413
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 7 AALGYQYINLDDCW---AELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61
A LG + + LDD W + +R S G+++ P G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVE 413
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 9 LGYQYINLDDCWAELNRDST---GNFVPKASAFPAGIKALADYVHAKGLKLGI 58
LG + LDD W D T G++ FP GI+ + VH +G K G+
Sbjct: 359 LGIEXFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGXKFGL 411
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 166 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 213
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 166 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 213
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 162 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 209
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 166 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 213
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 166 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 213
>pdb|1NQF|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
Methionine Substiution Construct For Se-Met Sad Phasing
Length = 594
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 42 IKALADYVHAKGLKLGIYSDAGTQT-------CSKTMPGSLGHEEQDA 82
+ L DY H G + Y + GTQ SKT+ G+L H DA
Sbjct: 166 VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDA 213
>pdb|3MBF|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Fructose
1,6-Bisphosphate
pdb|3MBD|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Phosphate
pdb|3QRH|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Glyceraldehyde
3-Phosphate
Length = 342
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 45 LADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAK---------TFASWGVDYLKY 95
L + + KG+++GI D G + S+G E+ D + TFA W + Y
Sbjct: 91 LTELLKKKGIEIGIKLDKGLIDYKEKEKISVGLEDLDLRCKSSAFKDATFAKWRSLFYFY 150
Query: 96 D-----NCFNTGTSPKERYPIMSK 114
D +C N S +Y I+ +
Sbjct: 151 DGIPSEDCINENCSILAKYAIICQ 174
>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta
(Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A
Resolution
Length = 417
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 11 YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYV 49
Y + LD W ++ N+VP+ AG+K LA+ +
Sbjct: 372 YFFPGLDKPWPHTHQCXRXNYVPEPDKIEAGVKILAEEI 410
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 173 AGPGGYNDPDMLEVGNGGMTTEEYR-------AHFSIWALAKAPLLIGCDIRA----MDK 221
A P ND D +GG EE + A++S WA APL +G D+ A +
Sbjct: 120 ASPRFLNDSDY----HGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSR 175
Query: 222 ITFNI 226
FN+
Sbjct: 176 TLFNM 180
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 173 AGPGGYNDPDMLEVGNGGMTTEEYR-------AHFSIWALAKAPLLIGCDIRA----MDK 221
A P ND D +GG EE + A++S WA APL +G D+ A +
Sbjct: 122 ASPRFLNDSDY----HGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSR 177
Query: 222 ITFNI 226
FN+
Sbjct: 178 TLFNM 182
>pdb|4ADP|A Chain A, Hcv-J6 Ns5b Polymerase V405i Mutant
Length = 579
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 52 KGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPI 111
K +L +Y D G + C K + + A AS+G Y SP +R
Sbjct: 157 KAARLIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQY-----------SPAQRVEF 205
Query: 112 MSKALLNSGRPIFFS 126
+ KA P+ FS
Sbjct: 206 LLKAWAEKKDPMGFS 220
>pdb|2XWH|A Chain A, Hcv-J6 Ns5b Polymerase Structure At 1.8 Angstrom
Length = 563
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 52 KGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPI 111
K +L +Y D G + C K + + A AS+G Y SP +R
Sbjct: 155 KAARLIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQY-----------SPAQRVEF 203
Query: 112 MSKALLNSGRPIFFS 126
+ KA P+ FS
Sbjct: 204 LLKAWAEKKDPMGFS 218
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 205 LAKAPLLIGCDIRAMDKITF-----NILSNKEVIAVNQDKLGVQGKKV 247
+AK + + CD R ++I NI+S E+I++ + K G+ KKV
Sbjct: 195 IAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,554,086
Number of Sequences: 62578
Number of extensions: 479187
Number of successful extensions: 1313
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 41
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)