Query 038817
Match_columns 303
No_of_seqs 147 out of 1428
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02808 alpha-galactosidase 100.0 2.2E-95 5E-100 683.7 28.8 301 1-303 58-358 (386)
2 PLN02229 alpha-galactosidase 100.0 2.7E-95 6E-100 687.2 29.2 300 1-303 89-391 (427)
3 PLN02692 alpha-galactosidase 100.0 4E-95 9E-100 683.3 29.4 301 1-303 82-382 (412)
4 KOG2366 Alpha-D-galactosidase 100.0 3E-81 6.5E-86 570.3 18.1 300 1-303 69-383 (414)
5 PLN03231 putative alpha-galact 100.0 1.9E-74 4E-79 536.5 19.6 241 1-242 26-352 (357)
6 PLN02899 alpha-galactosidase 100.0 3.9E-70 8.4E-75 528.2 26.0 240 1-242 56-382 (633)
7 PF02065 Melibiase: Melibiase; 100.0 3.1E-31 6.8E-36 252.0 15.7 260 3-275 64-378 (394)
8 COG3345 GalA Alpha-galactosida 99.7 7.7E-18 1.7E-22 161.1 11.0 128 4-132 316-487 (687)
9 PLN02219 probable galactinol-- 99.6 3.4E-14 7.5E-19 141.6 18.6 269 6-286 225-603 (775)
10 PLN02355 probable galactinol-- 99.5 2E-13 4.4E-18 136.4 18.0 252 6-273 229-581 (758)
11 PF05691 Raffinose_syn: Raffin 99.5 2.1E-13 4.6E-18 136.9 17.7 256 5-273 220-584 (747)
12 PLN02684 Probable galactinol-- 99.5 7E-13 1.5E-17 132.2 18.9 253 6-274 228-573 (750)
13 PLN02711 Probable galactinol-- 99.5 5.1E-13 1.1E-17 133.4 17.1 272 5-288 238-633 (777)
14 cd06592 GH31_glucosidase_KIAA1 99.4 3.9E-12 8.5E-17 118.1 15.9 143 3-159 36-227 (303)
15 cd06593 GH31_xylosidase_YicI Y 99.4 8.3E-12 1.8E-16 116.1 13.0 152 3-165 30-236 (308)
16 cd06589 GH31 The enzymes of gl 99.1 2E-09 4.3E-14 98.1 15.3 139 4-165 31-198 (265)
17 PLN02982 galactinol-raffinose 99.1 1.2E-09 2.6E-14 109.6 14.6 179 39-225 389-632 (865)
18 cd06599 GH31_glycosidase_Aec37 99.0 5.5E-09 1.2E-13 97.6 13.6 154 3-165 35-250 (317)
19 cd06598 GH31_transferase_CtsZ 99.0 6.7E-09 1.5E-13 97.1 12.5 153 4-165 31-243 (317)
20 cd06604 GH31_glucosidase_II_Ma 98.9 1.6E-08 3.6E-13 95.3 13.2 150 3-165 30-249 (339)
21 cd06600 GH31_MGAM-like This fa 98.9 4.3E-08 9.4E-13 91.6 14.5 150 3-165 30-227 (317)
22 cd06601 GH31_lyase_GLase GLase 98.9 3.9E-08 8.4E-13 92.4 13.8 149 3-164 30-230 (332)
23 PF01055 Glyco_hydro_31: Glyco 98.9 1.7E-08 3.7E-13 98.3 11.5 149 4-165 50-265 (441)
24 cd06591 GH31_xylosidase_XylS X 98.8 6.1E-08 1.3E-12 90.7 13.4 151 4-165 31-243 (319)
25 cd06595 GH31_xylosidase_XylS-l 98.8 7.6E-08 1.7E-12 89.0 13.0 152 3-163 31-222 (292)
26 PRK10658 putative alpha-glucos 98.8 6.1E-08 1.3E-12 98.7 12.8 150 4-164 290-494 (665)
27 cd06602 GH31_MGAM_SI_GAA This 98.8 3.1E-07 6.8E-12 86.6 16.7 150 3-165 30-231 (339)
28 PF10566 Glyco_hydro_97: Glyco 98.7 8.2E-08 1.8E-12 87.3 8.9 129 7-146 42-172 (273)
29 cd06603 GH31_GANC_GANAB_alpha 98.7 8.3E-07 1.8E-11 83.8 15.4 150 3-165 30-249 (339)
30 cd06594 GH31_glucosidase_YihQ 98.6 1.7E-06 3.6E-11 81.0 15.1 153 3-164 29-246 (317)
31 cd06597 GH31_transferase_CtsY 98.5 3.1E-06 6.6E-11 80.0 14.7 153 3-165 30-263 (340)
32 COG1501 Alpha-glucosidases, fa 98.5 1.8E-06 3.9E-11 89.1 13.3 146 7-165 292-493 (772)
33 PLN02763 hydrolase, hydrolyzin 98.3 4.9E-06 1.1E-10 87.2 12.7 149 3-164 207-427 (978)
34 PRK10426 alpha-glucosidase; Pr 98.3 7.2E-06 1.6E-10 83.4 12.6 145 3-157 227-433 (635)
35 cd06596 GH31_CPE1046 CPE1046 i 96.3 0.067 1.5E-06 48.4 11.7 142 42-212 77-223 (261)
36 KOG1065 Maltase glucoamylase a 96.3 0.0092 2E-07 61.4 6.6 57 4-65 318-376 (805)
37 TIGR01515 branching_enzym alph 94.4 0.15 3.3E-06 52.0 8.2 93 5-98 165-297 (613)
38 PF01120 Alpha_L_fucos: Alpha- 94.0 0.77 1.7E-05 43.5 11.7 120 5-127 99-243 (346)
39 smart00812 Alpha_L_fucos Alpha 93.2 1 2.2E-05 43.4 11.0 251 4-275 88-376 (384)
40 PRK10785 maltodextrin glucosid 90.5 22 0.00048 36.3 20.9 51 5-58 187-244 (598)
41 PRK14706 glycogen branching en 90.5 1.2 2.5E-05 45.8 8.5 95 5-100 176-310 (639)
42 COG0296 GlgB 1,4-alpha-glucan 89.0 1 2.2E-05 45.9 6.6 91 6-100 174-307 (628)
43 PRK12568 glycogen branching en 88.3 2.8 6E-05 43.7 9.3 91 5-98 278-410 (730)
44 TIGR02104 pulA_typeI pullulana 87.1 5.2 0.00011 40.9 10.4 82 41-125 230-345 (605)
45 PF07302 AroM: AroM protein; 86.9 5.8 0.00013 35.2 9.3 106 5-126 82-208 (221)
46 PRK12313 glycogen branching en 86.6 3.3 7.2E-05 42.5 8.8 93 5-98 179-311 (633)
47 PLN02960 alpha-amylase 85.8 5 0.00011 42.5 9.5 95 5-100 425-560 (897)
48 PRK14705 glycogen branching en 85.7 3.8 8.3E-05 45.1 9.0 94 5-99 774-907 (1224)
49 KOG3340 Alpha-L-fucosidase [Ca 84.1 1.4 3.1E-05 41.1 4.2 58 5-64 110-174 (454)
50 TIGR02402 trehalose_TreZ malto 83.7 8 0.00017 39.0 9.8 117 5-122 119-271 (542)
51 PF02638 DUF187: Glycosyl hydr 82.9 9.3 0.0002 35.6 9.3 94 5-100 27-165 (311)
52 PRK05402 glycogen branching en 82.6 7.7 0.00017 40.6 9.4 92 5-98 274-406 (726)
53 cd02871 GH18_chitinase_D-like 79.0 16 0.00035 34.0 9.4 88 40-127 60-153 (312)
54 COG3669 Alpha-L-fucosidase [Ca 77.4 3.9 8.4E-05 39.2 4.7 58 4-63 61-124 (430)
55 TIGR02456 treS_nterm trehalose 76.5 20 0.00043 36.1 9.9 32 253-285 470-501 (539)
56 TIGR02100 glgX_debranch glycog 76.3 6.2 0.00013 41.0 6.3 113 5-118 192-365 (688)
57 TIGR02403 trehalose_treC alpha 75.7 20 0.00043 36.1 9.7 53 4-58 34-93 (543)
58 PF14488 DUF4434: Domain of un 75.4 3.6 7.9E-05 34.8 3.7 53 5-64 28-91 (166)
59 PRK14510 putative bifunctional 75.2 17 0.00037 40.4 9.6 118 5-123 195-369 (1221)
60 PF01791 DeoC: DeoC/LacD famil 74.6 11 0.00025 33.3 6.9 82 42-126 114-199 (236)
61 cd06522 GH25_AtlA-like AtlA is 74.2 19 0.00041 30.9 8.0 106 5-127 20-131 (192)
62 cd00598 GH18_chitinase-like Th 73.2 29 0.00063 29.6 9.0 118 7-128 20-147 (210)
63 KOG0470 1,4-alpha-glucan branc 71.9 6.3 0.00014 40.7 4.9 97 4-100 262-406 (757)
64 PF03102 NeuB: NeuB family; I 71.9 9.7 0.00021 34.3 5.7 75 42-132 58-152 (241)
65 COG1830 FbaB DhnA-type fructos 69.7 40 0.00086 30.8 9.1 77 42-126 132-208 (265)
66 cd08577 PI-PLCc_GDPD_SF_unchar 69.2 12 0.00026 33.3 5.7 41 42-96 187-227 (228)
67 cd08607 GDPD_GDE5 Glycerophosp 68.1 12 0.00026 34.1 5.7 43 43-98 248-290 (290)
68 PF13200 DUF4015: Putative gly 67.0 24 0.00052 33.1 7.4 96 6-101 22-149 (316)
69 PRK06233 hypothetical protein; 66.1 27 0.00058 33.4 7.8 89 4-99 178-279 (372)
70 PRK06852 aldolase; Validated 65.9 45 0.00097 31.1 8.9 80 42-126 156-236 (304)
71 cd08605 GDPD_GDE5_like_1_plant 65.2 13 0.00029 33.7 5.4 43 43-98 240-282 (282)
72 KOG3111 D-ribulose-5-phosphate 64.4 8.5 0.00018 33.5 3.5 24 41-64 100-123 (224)
73 PRK03705 glycogen debranching 64.2 28 0.0006 36.1 7.9 95 5-100 187-340 (658)
74 TIGR03569 NeuB_NnaB N-acetylne 63.8 22 0.00048 33.5 6.6 43 40-98 76-118 (329)
75 PF09260 DUF1966: Domain of un 63.6 36 0.00078 25.8 6.5 53 247-303 2-55 (91)
76 cd02875 GH18_chitobiase Chitob 61.7 27 0.0006 33.1 6.9 83 43-128 67-157 (358)
77 PRK12858 tagatose 1,6-diphosph 61.4 64 0.0014 30.6 9.2 50 77-126 185-247 (340)
78 cd08564 GDPD_GsGDE_like Glycer 60.8 23 0.0005 31.9 6.0 45 43-98 213-257 (265)
79 TIGR02103 pullul_strch alpha-1 58.7 40 0.00087 36.2 8.1 87 42-131 406-528 (898)
80 cd08555 PI-PLCc_GDPD_SF Cataly 58.5 28 0.00061 29.3 5.8 42 42-97 138-179 (179)
81 cd08583 PI-PLCc_GDPD_SF_unchar 58.1 31 0.00068 30.4 6.3 42 43-99 195-236 (237)
82 PF14871 GHL6: Hypothetical gl 57.5 29 0.00064 28.1 5.5 58 4-64 7-68 (132)
83 TIGR00060 L18_bact ribosomal p 57.3 7.6 0.00016 30.8 1.9 40 2-56 75-114 (114)
84 PRK08227 autoinducer 2 aldolas 57.0 65 0.0014 29.4 8.2 70 42-126 129-198 (264)
85 smart00642 Aamy Alpha-amylase 57.0 22 0.00048 29.9 4.9 53 5-58 27-88 (166)
86 cd08575 GDPD_GDE4_like Glycero 56.8 25 0.00054 31.7 5.6 42 43-99 221-262 (264)
87 KOG2366 Alpha-D-galactosidase 56.2 3.2 6.9E-05 39.6 -0.4 141 85-249 37-192 (414)
88 cd08580 GDPD_Rv2277c_like Glyc 56.0 30 0.00066 31.4 5.9 41 43-98 219-260 (263)
89 cd06542 GH18_EndoS-like Endo-b 54.7 62 0.0013 28.8 7.7 88 41-128 52-151 (255)
90 cd03465 URO-D_like The URO-D _ 54.6 24 0.00052 32.6 5.2 88 5-125 176-268 (330)
91 cd06414 GH25_LytC-like The Lyt 53.6 49 0.0011 28.2 6.6 107 6-126 18-133 (191)
92 cd00465 URO-D_CIMS_like The UR 53.3 21 0.00047 32.5 4.6 76 4-99 151-231 (306)
93 cd02931 ER_like_FMN Enoate red 52.6 46 0.001 31.9 6.9 91 3-96 156-272 (382)
94 KOG2672 Lipoate synthase [Coen 52.5 20 0.00043 33.0 4.0 50 79-129 145-196 (360)
95 TIGR01668 YqeG_hyp_ppase HAD s 52.5 35 0.00076 28.5 5.4 47 5-61 19-67 (170)
96 PRK09454 ugpQ cytoplasmic glyc 51.6 40 0.00088 30.0 6.0 42 43-99 199-240 (249)
97 PRK12595 bifunctional 3-deoxy- 50.9 63 0.0014 30.8 7.4 94 3-127 138-232 (360)
98 cd08579 GDPD_memb_like Glycero 50.9 37 0.00081 29.5 5.5 40 43-97 180-219 (220)
99 cd06523 GH25_PlyB-like PlyB is 50.7 59 0.0013 27.4 6.6 104 5-126 17-122 (177)
100 TIGR03128 RuMP_HxlA 3-hexulose 50.3 1.6E+02 0.0034 25.1 9.3 44 42-98 91-135 (206)
101 TIGR03586 PseI pseudaminic aci 50.1 63 0.0014 30.5 7.1 42 42-99 79-120 (327)
102 cd08563 GDPD_TtGDE_like Glycer 49.8 41 0.00088 29.5 5.6 40 43-97 190-229 (230)
103 PF08533 Glyco_hydro_42C: Beta 49.6 16 0.00034 24.9 2.3 30 254-284 3-32 (58)
104 PF11941 DUF3459: Domain of un 49.4 25 0.00055 25.6 3.7 24 257-280 36-59 (89)
105 PRK13398 3-deoxy-7-phosphohept 49.3 68 0.0015 29.2 7.1 95 3-127 47-141 (266)
106 cd08581 GDPD_like_1 Glyceropho 49.3 36 0.00079 30.0 5.2 39 44-97 190-228 (229)
107 PF13199 Glyco_hydro_66: Glyco 49.1 64 0.0014 32.8 7.4 192 5-215 126-392 (559)
108 PF00128 Alpha-amylase: Alpha 49.0 15 0.00032 32.9 2.8 115 5-124 12-193 (316)
109 cd08572 GDPD_GDE5_like Glycero 48.9 39 0.00084 31.1 5.5 43 43-98 251-293 (293)
110 cd08612 GDPD_GDE4 Glycerophosp 48.8 44 0.00095 30.8 5.9 41 43-98 251-291 (300)
111 cd08601 GDPD_SaGlpQ_like Glyce 48.8 46 0.001 29.7 5.9 41 43-98 208-248 (256)
112 PLN02447 1,4-alpha-glucan-bran 48.5 29 0.00062 36.5 5.0 94 5-99 259-393 (758)
113 PF09863 DUF2090: Uncharacteri 48.5 18 0.00039 33.7 3.1 178 34-229 58-285 (311)
114 cd08582 GDPD_like_2 Glyceropho 48.2 46 0.001 29.2 5.7 41 43-98 191-231 (233)
115 cd08562 GDPD_EcUgpQ_like Glyce 47.3 50 0.0011 28.7 5.8 40 43-97 189-228 (229)
116 cd06416 GH25_Lys1-like Lys-1 i 47.2 1.1E+02 0.0023 26.1 7.8 105 5-126 17-130 (196)
117 CHL00139 rpl18 ribosomal prote 47.2 14 0.00031 29.0 2.0 40 2-56 70-109 (109)
118 PRK10933 trehalose-6-phosphate 47.0 34 0.00074 34.6 5.2 52 5-58 41-99 (551)
119 COG2200 Rtn c-di-GMP phosphodi 46.2 80 0.0017 28.3 7.1 73 42-128 138-214 (256)
120 TIGR02102 pullulan_Gpos pullul 45.9 87 0.0019 34.6 8.2 82 41-125 556-668 (1111)
121 cd00599 GH25_muramidase Endo-N 45.7 72 0.0016 26.8 6.4 104 5-127 16-126 (186)
122 COG0407 HemE Uroporphyrinogen- 45.4 31 0.00066 32.9 4.3 89 4-122 196-285 (352)
123 cd08567 GDPD_SpGDE_like Glycer 45.4 50 0.0011 29.3 5.6 41 43-98 221-261 (263)
124 COG3867 Arabinogalactan endo-1 45.2 63 0.0014 30.2 6.0 85 5-97 71-179 (403)
125 PLN02361 alpha-amylase 45.1 1.1E+02 0.0023 29.8 8.0 51 5-57 37-93 (401)
126 cd08573 GDPD_GDE1 Glycerophosp 44.9 51 0.0011 29.6 5.6 39 43-97 218-257 (258)
127 PF02879 PGM_PMM_II: Phosphogl 44.5 66 0.0014 24.3 5.4 54 6-65 41-95 (104)
128 cd08606 GDPD_YPL110cp_fungi Gl 44.2 53 0.0011 29.8 5.6 43 43-98 235-277 (286)
129 PF06964 Alpha-L-AF_C: Alpha-L 43.9 57 0.0012 27.4 5.4 28 261-288 102-129 (177)
130 cd02803 OYE_like_FMN_family Ol 43.8 2.3E+02 0.0049 26.1 9.9 89 3-99 147-251 (327)
131 cd08574 GDPD_GDE_2_3_6 Glycero 43.6 53 0.0011 29.4 5.4 39 43-96 213-251 (252)
132 PRK09722 allulose-6-phosphate 43.2 55 0.0012 29.2 5.4 23 42-64 97-119 (229)
133 TIGR01463 mtaA_cmuA methyltran 43.0 36 0.00079 31.8 4.5 76 4-99 187-265 (340)
134 cd08610 GDPD_GDE6 Glycerophosp 43.0 57 0.0012 30.5 5.7 42 43-99 235-276 (316)
135 PRK06769 hypothetical protein; 42.3 62 0.0013 27.1 5.4 26 36-62 28-53 (173)
136 cd08561 GDPD_cytoplasmic_ScUgp 42.0 65 0.0014 28.6 5.8 41 43-98 202-242 (249)
137 cd08609 GDPD_GDE3 Glycerophosp 41.9 57 0.0012 30.5 5.5 41 43-98 235-275 (315)
138 PRK09250 fructose-bisphosphate 41.8 1.8E+02 0.0039 27.7 8.8 57 42-100 181-241 (348)
139 PLN03244 alpha-amylase; Provis 41.8 34 0.00073 36.2 4.2 61 39-99 440-534 (872)
140 TIGR00433 bioB biotin syntheta 41.7 49 0.0011 30.1 5.0 48 44-98 162-209 (296)
141 PRK10481 hypothetical protein; 41.7 2.5E+02 0.0055 24.9 9.3 108 5-126 85-212 (224)
142 cd08556 GDPD Glycerophosphodie 40.6 72 0.0016 26.4 5.6 40 43-97 150-189 (189)
143 COG0036 Rpe Pentose-5-phosphat 40.0 59 0.0013 28.8 4.9 28 36-64 93-120 (220)
144 cd07945 DRE_TIM_CMS Leptospira 39.6 2.4E+02 0.0052 25.8 9.2 79 42-126 117-195 (280)
145 PF02806 Alpha-amylase_C: Alph 39.5 67 0.0014 23.7 4.7 33 252-284 10-44 (95)
146 TIGR01212 radical SAM protein, 39.0 83 0.0018 29.1 6.1 50 42-98 165-215 (302)
147 smart00052 EAL Putative diguan 39.0 1.1E+02 0.0023 26.3 6.6 71 42-126 135-209 (241)
148 cd07941 DRE_TIM_LeuA3 Desulfob 38.9 2.2E+02 0.0047 25.8 8.8 79 42-126 121-199 (273)
149 cd03311 CIMS_C_terminal_like C 38.6 89 0.0019 29.0 6.3 88 4-100 162-252 (332)
150 cd01948 EAL EAL domain. This d 38.4 65 0.0014 27.7 5.1 71 42-126 134-208 (240)
151 PRK07094 biotin synthase; Prov 37.8 34 0.00073 31.7 3.3 19 79-98 168-186 (323)
152 TIGR03315 Se_ygfK putative sel 37.7 18 0.00039 39.3 1.6 52 2-61 252-303 (1012)
153 PRK13561 putative diguanylate 36.8 49 0.0011 33.8 4.6 50 41-101 535-584 (651)
154 PRK14511 maltooligosyl trehalo 36.7 50 0.0011 35.3 4.6 58 5-62 28-91 (879)
155 cd06543 GH18_PF-ChiA-like PF-C 36.7 2.6E+02 0.0057 25.8 9.0 87 41-128 55-145 (294)
156 TIGR01691 enolase-ppase 2,3-di 36.6 41 0.00088 29.7 3.5 26 36-62 95-120 (220)
157 PRK05593 rplR 50S ribosomal pr 36.6 26 0.00056 27.9 2.0 40 2-56 78-117 (117)
158 PF00834 Ribul_P_3_epim: Ribul 35.8 48 0.001 28.9 3.7 23 42-64 94-116 (201)
159 cd08604 GDPD_SHV3_repeat_2 Gly 35.5 1.2E+02 0.0026 27.9 6.6 53 44-99 241-295 (300)
160 PF11871 DUF3391: Domain of un 35.1 36 0.00077 26.8 2.6 46 53-98 9-57 (128)
161 PLN02877 alpha-amylase/limit d 35.1 2.3E+02 0.0049 30.9 9.2 87 42-131 468-599 (970)
162 PF01261 AP_endonuc_2: Xylose 35.0 98 0.0021 25.8 5.6 115 5-130 3-135 (213)
163 cd04469 S1_Hex1 S1_Hex1: Hex1, 34.9 43 0.00093 24.5 2.7 38 11-52 5-43 (75)
164 cd06545 GH18_3CO4_chitinase Th 34.3 1.2E+02 0.0026 27.0 6.3 99 9-117 21-125 (253)
165 TIGR02401 trehalose_TreY malto 33.6 94 0.002 33.1 6.0 56 5-60 24-85 (825)
166 cd08570 GDPD_YPL206cp_fungi Gl 33.5 1.1E+02 0.0024 26.8 5.8 40 43-97 194-233 (234)
167 PF14509 GH97_C: Glycosyl-hydr 33.4 1.8E+02 0.0039 22.4 6.2 36 251-287 14-50 (103)
168 PRK09853 putative selenate red 33.3 23 0.00049 38.5 1.5 52 2-61 254-305 (1019)
169 cd08608 GDPD_GDE2 Glycerophosp 33.2 1.1E+02 0.0024 29.2 6.0 42 43-99 213-254 (351)
170 cd02933 OYE_like_FMN Old yello 32.9 2E+02 0.0044 27.0 7.8 88 3-95 158-260 (338)
171 cd06546 GH18_CTS3_chitinase GH 32.8 1.7E+02 0.0036 26.4 6.9 83 42-127 61-148 (256)
172 PRK08745 ribulose-phosphate 3- 32.7 2.6E+02 0.0056 24.8 7.9 24 42-65 99-122 (223)
173 cd06547 GH85_ENGase Endo-beta- 32.5 1.8E+02 0.0038 27.6 7.2 91 26-118 34-133 (339)
174 cd02932 OYE_YqiM_FMN Old yello 32.5 1.5E+02 0.0032 27.7 6.8 85 3-95 160-260 (336)
175 PF00563 EAL: EAL domain; Int 32.3 1.9E+02 0.0041 24.6 7.0 68 44-126 138-209 (236)
176 PF05913 DUF871: Bacterial pro 32.2 65 0.0014 30.7 4.3 52 40-101 47-101 (357)
177 cd06416 GH25_Lys1-like Lys-1 i 31.9 45 0.00097 28.6 2.9 23 41-63 111-133 (196)
178 COG0854 PdxJ Pyridoxal phospha 31.7 1.4E+02 0.003 26.7 5.8 42 40-96 111-152 (243)
179 COG0678 AHP1 Peroxiredoxin [Po 31.5 1.1E+02 0.0023 25.7 4.8 51 41-95 25-78 (165)
180 cd03174 DRE_TIM_metallolyase D 31.4 3.3E+02 0.0072 23.9 8.7 78 42-126 117-194 (265)
181 cd02072 Glm_B12_BD B12 binding 31.4 51 0.0011 26.6 2.9 79 2-91 19-110 (128)
182 PRK05628 coproporphyrinogen II 31.2 79 0.0017 30.1 4.8 77 5-95 113-194 (375)
183 PRK09441 cytoplasmic alpha-amy 31.2 86 0.0019 31.0 5.2 43 75-120 211-254 (479)
184 TIGR01684 viral_ppase viral ph 31.1 71 0.0015 29.7 4.2 36 28-63 134-172 (301)
185 cd03310 CIMS_like CIMS - Cobal 30.7 1.1E+02 0.0025 28.0 5.6 75 4-101 158-233 (321)
186 cd06414 GH25_LytC-like The Lyt 30.6 43 0.00094 28.6 2.6 22 42-63 115-136 (191)
187 cd04468 S1_eIF5A S1_eIF5A: Euk 30.4 56 0.0012 23.4 2.7 39 10-52 5-43 (69)
188 PF08924 DUF1906: Domain of un 30.3 45 0.00097 27.1 2.5 18 42-59 118-135 (136)
189 cd00019 AP2Ec AP endonuclease 30.3 2.5E+02 0.0055 25.1 7.7 116 5-129 18-145 (279)
190 PF06189 5-nucleotidase: 5'-nu 30.3 29 0.00063 31.6 1.5 73 42-126 166-239 (264)
191 cd02930 DCR_FMN 2,4-dienoyl-Co 29.9 1.7E+02 0.0038 27.5 6.8 86 3-96 143-244 (353)
192 PRK11059 regulatory protein Cs 29.9 1E+02 0.0022 31.5 5.6 47 40-100 533-579 (640)
193 PLN02801 beta-amylase 29.8 55 0.0012 32.6 3.4 47 5-57 45-91 (517)
194 cd00432 Ribosomal_L18_L5e Ribo 29.7 47 0.001 25.4 2.4 38 2-54 66-103 (103)
195 cd08559 GDPD_periplasmic_GlpQ_ 29.6 87 0.0019 28.7 4.6 49 43-97 246-295 (296)
196 PLN00196 alpha-amylase; Provis 29.1 98 0.0021 30.3 5.1 50 5-56 52-108 (428)
197 PLN02803 beta-amylase 28.7 58 0.0013 32.7 3.4 48 5-58 115-162 (548)
198 PRK08091 ribulose-phosphate 3- 28.5 1.1E+02 0.0024 27.3 4.9 23 42-64 105-129 (228)
199 PF01373 Glyco_hydro_14: Glyco 28.3 31 0.00066 33.4 1.3 47 5-58 24-71 (402)
200 cd08602 GDPD_ScGlpQ1_like Glyc 28.2 1.8E+02 0.0038 27.1 6.4 53 42-97 255-308 (309)
201 PF00296 Bac_luciferase: Lucif 28.0 94 0.002 28.2 4.5 45 54-98 1-45 (307)
202 cd06413 GH25_muramidase_1 Unch 27.8 80 0.0017 26.9 3.8 44 5-61 19-62 (191)
203 TIGR01361 DAHP_synth_Bsub phos 27.8 1.7E+02 0.0036 26.6 6.0 64 40-127 76-139 (260)
204 cd08210 RLP_RrRLP Ribulose bis 27.5 1.2E+02 0.0026 29.0 5.2 51 77-127 142-198 (364)
205 cd08205 RuBisCO_IV_RLP Ribulos 27.5 1.1E+02 0.0023 29.4 4.9 49 78-126 148-202 (367)
206 TIGR02109 PQQ_syn_pqqE coenzym 27.4 73 0.0016 29.9 3.8 48 43-98 135-182 (358)
207 PF10305 Fmp27_SW: RNA pol II 27.2 43 0.00093 25.9 1.8 24 30-55 70-93 (103)
208 PRK07226 fructose-bisphosphate 27.1 4.6E+02 0.01 23.5 9.2 38 81-126 165-202 (267)
209 PRK05301 pyrroloquinoline quin 26.8 80 0.0017 30.0 3.9 47 44-98 145-191 (378)
210 PLN00197 beta-amylase; Provisi 26.7 67 0.0015 32.4 3.4 48 5-58 135-182 (573)
211 PLN02161 beta-amylase 26.6 67 0.0015 32.1 3.3 48 5-58 125-172 (531)
212 PHA02119 hypothetical protein 26.5 56 0.0012 23.4 2.1 25 32-56 45-70 (87)
213 cd00599 GH25_muramidase Endo-N 26.4 49 0.0011 27.8 2.2 24 40-63 104-128 (186)
214 PHA03398 viral phosphatase sup 26.3 87 0.0019 29.2 3.9 35 28-62 136-173 (303)
215 PLN02455 fructose-bisphosphate 26.3 1.4E+02 0.003 28.4 5.2 57 43-100 87-148 (358)
216 PRK13523 NADPH dehydrogenase N 26.3 1.9E+02 0.004 27.3 6.2 87 3-97 148-248 (337)
217 COG2898 Uncharacterized conser 26.0 63 0.0014 32.6 3.1 35 28-62 261-295 (538)
218 cd06525 GH25_Lyc-like Lyc mura 25.9 57 0.0012 27.6 2.5 23 41-63 104-127 (184)
219 PRK06520 5-methyltetrahydropte 25.8 2E+02 0.0044 27.4 6.5 93 4-99 177-278 (368)
220 PRK13813 orotidine 5'-phosphat 25.4 2.6E+02 0.0056 24.1 6.6 48 42-96 95-146 (215)
221 PRK13397 3-deoxy-7-phosphohept 25.4 2.1E+02 0.0045 25.9 6.1 63 41-127 67-129 (250)
222 cd08070 MPN_like Mpr1p, Pad1p 25.4 98 0.0021 24.4 3.7 48 40-96 56-105 (128)
223 cd07943 DRE_TIM_HOA 4-hydroxy- 25.2 4.9E+02 0.011 23.2 9.2 67 42-117 114-180 (263)
224 cd04735 OYE_like_4_FMN Old yel 25.2 2E+02 0.0043 27.2 6.3 87 3-97 150-256 (353)
225 PLN02705 beta-amylase 25.1 69 0.0015 32.7 3.2 48 5-58 276-323 (681)
226 KOG0780 Signal recognition par 25.1 3.2E+02 0.0068 26.8 7.4 73 42-122 118-215 (483)
227 TIGR02455 TreS_stutzeri trehal 25.0 2E+02 0.0044 29.9 6.5 35 252-286 609-644 (688)
228 PRK09936 hypothetical protein; 25.0 82 0.0018 29.2 3.4 48 5-64 46-98 (296)
229 cd06525 GH25_Lyc-like Lyc mura 24.9 1E+02 0.0022 26.0 3.9 103 5-126 16-124 (184)
230 smart00729 Elp3 Elongator prot 24.7 1.9E+02 0.0041 23.8 5.6 80 43-122 100-182 (216)
231 COG4574 Eco Serine protease in 24.6 33 0.00072 27.9 0.7 20 82-101 81-100 (162)
232 PF05063 MT-A70: MT-A70 ; Int 24.5 1.7E+02 0.0038 24.5 5.2 70 11-95 1-75 (176)
233 PF07745 Glyco_hydro_53: Glyco 24.4 1.5E+02 0.0033 28.0 5.2 78 5-91 32-125 (332)
234 cd02801 DUS_like_FMN Dihydrour 24.4 3.9E+02 0.0085 22.9 7.7 84 3-97 73-159 (231)
235 cd06415 GH25_Cpl1-like Cpl-1 l 24.2 58 0.0013 27.9 2.3 23 41-63 109-131 (196)
236 PF01645 Glu_synthase: Conserv 24.2 2.2E+02 0.0048 27.3 6.3 81 28-120 171-270 (368)
237 COG0826 Collagenase and relate 24.2 1.9E+02 0.0041 27.5 5.9 50 42-97 51-100 (347)
238 cd02879 GH18_plant_chitinase_c 24.1 1E+02 0.0022 28.4 4.0 86 42-128 53-156 (299)
239 cd08565 GDPD_pAtGDE_like Glyce 23.8 1.7E+02 0.0037 25.8 5.3 41 43-99 192-232 (235)
240 cd08576 GDPD_like_SMaseD_PLD G 23.5 2.9E+02 0.0063 25.3 6.7 45 39-98 190-239 (265)
241 PRK14507 putative bifunctional 23.4 1.3E+02 0.0027 34.9 5.1 58 5-62 766-829 (1693)
242 cd08560 GDPD_EcGlpQ_like_1 Gly 23.3 2.7E+02 0.0059 26.5 6.8 59 42-100 280-349 (356)
243 TIGR01459 HAD-SF-IIA-hyp4 HAD- 23.2 1.1E+02 0.0023 27.1 3.8 60 10-91 7-66 (242)
244 PRK05904 coproporphyrinogen II 23.1 1.4E+02 0.003 28.3 4.8 79 5-97 108-191 (353)
245 PTZ00170 D-ribulose-5-phosphat 23.1 2.4E+02 0.0051 24.9 6.0 51 75-126 18-69 (228)
246 PF07555 NAGidase: beta-N-acet 22.9 1.2E+02 0.0026 28.3 4.2 53 41-97 57-112 (306)
247 cd04734 OYE_like_3_FMN Old yel 22.8 2.7E+02 0.0058 26.2 6.6 84 4-95 148-248 (343)
248 PRK09505 malS alpha-amylase; R 22.6 1.5E+02 0.0033 30.9 5.2 53 5-57 238-309 (683)
249 cd04747 OYE_like_5_FMN Old yel 22.6 3.4E+02 0.0075 25.8 7.3 90 3-96 150-255 (361)
250 PF02055 Glyco_hydro_30: O-Gly 22.4 1.5E+02 0.0033 29.6 5.1 62 224-285 405-473 (496)
251 TIGR02884 spore_pdaA delta-lac 22.3 2.1E+02 0.0046 25.0 5.5 25 37-61 134-160 (224)
252 PF01136 Peptidase_U32: Peptid 22.3 83 0.0018 27.5 2.9 37 81-117 161-197 (233)
253 PF13344 Hydrolase_6: Haloacid 22.2 2.9E+02 0.0063 20.8 5.6 52 28-91 6-57 (101)
254 COG0546 Gph Predicted phosphat 22.1 2.7E+02 0.0059 24.0 6.2 26 36-62 89-114 (220)
255 cd06418 GH25_BacA-like BacA is 21.7 77 0.0017 27.8 2.6 22 42-63 130-151 (212)
256 TIGR03326 rubisco_III ribulose 21.7 1.7E+02 0.0038 28.5 5.1 53 76-128 160-218 (412)
257 PLN02905 beta-amylase 21.6 91 0.002 32.0 3.2 48 5-58 294-341 (702)
258 cd08148 RuBisCO_large Ribulose 21.6 1.4E+02 0.0031 28.6 4.5 54 76-129 143-202 (366)
259 PLN02425 probable fructose-bis 21.5 2E+02 0.0043 27.7 5.3 57 43-100 122-183 (390)
260 cd06524 GH25_YegX-like YegX is 21.5 1.4E+02 0.0031 25.4 4.1 44 6-62 21-64 (194)
261 PRK08599 coproporphyrinogen II 21.4 1.5E+02 0.0032 28.2 4.6 79 5-97 105-188 (377)
262 PLN02227 fructose-bisphosphate 21.1 2E+02 0.0042 27.8 5.2 57 43-100 131-192 (399)
263 COG1242 Predicted Fe-S oxidore 21.0 2.4E+02 0.0051 26.2 5.5 77 43-126 171-263 (312)
264 TIGR01656 Histidinol-ppas hist 21.0 1.3E+02 0.0029 24.1 3.7 24 38-62 29-52 (147)
265 cd08585 GDPD_like_3 Glyceropho 20.9 1.6E+02 0.0036 26.0 4.6 36 43-93 198-234 (237)
266 KOG2386 mRNA capping enzyme, g 20.9 4.3E+02 0.0094 25.6 7.5 80 42-132 50-135 (393)
267 PRK06256 biotin synthase; Vali 20.9 2.8E+02 0.0062 25.7 6.4 85 4-100 156-240 (336)
268 cd00958 DhnA Class I fructose- 20.9 5.6E+02 0.012 22.2 9.1 72 42-126 111-185 (235)
269 cd06412 GH25_CH-type CH-type ( 20.8 76 0.0016 27.3 2.3 22 42-63 116-138 (199)
270 TIGR02456 treS_nterm trehalose 20.7 1.4E+02 0.0031 29.9 4.6 52 5-58 36-94 (539)
271 PRK10605 N-ethylmaleimide redu 20.6 3.8E+02 0.0081 25.5 7.2 89 3-96 165-269 (362)
272 PF06574 FAD_syn: FAD syntheta 20.4 2.1E+02 0.0046 23.7 4.8 58 42-99 25-86 (157)
273 TIGR01664 DNA-3'-Pase DNA 3'-p 20.4 1.5E+02 0.0032 24.7 4.0 22 40-61 45-66 (166)
274 COG1609 PurR Transcriptional r 20.4 4.7E+02 0.01 24.3 7.7 102 5-119 132-234 (333)
275 PRK08942 D,D-heptose 1,7-bisph 20.4 1.7E+02 0.0038 24.2 4.4 24 37-61 30-53 (181)
276 PRK07379 coproporphyrinogen II 20.2 1.7E+02 0.0036 28.2 4.8 79 5-97 120-203 (400)
277 TIGR00640 acid_CoA_mut_C methy 20.1 66 0.0014 25.9 1.7 75 2-91 22-107 (132)
278 PF03009 GDPD: Glycerophosphor 20.1 2.1E+02 0.0046 24.5 5.1 43 43-98 212-254 (256)
279 cd07940 DRE_TIM_IPMS 2-isoprop 20.1 6.3E+02 0.014 22.6 8.9 68 42-118 116-183 (268)
280 COG3325 ChiA Chitinase [Carboh 20.0 2.2E+02 0.0047 28.0 5.3 54 75-128 153-223 (441)
No 1
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=2.2e-95 Score=683.68 Aligned_cols=301 Identities=88% Similarity=1.437 Sum_probs=291.2
Q ss_pred CccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
|+++||+++||+||+|||||+...||+.|+|+||++|||+||++|++|||++|||||||+++|..+|.+.+|||++|+++
T Consensus 58 mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~ 137 (386)
T PLN02808 58 MVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQ 137 (386)
T ss_pred HHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHH
Confidence 67899999999999999999998899999999999999999999999999999999999999999998878999999999
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHH
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMT 160 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~ 160 (303)
|+++|++|||||||+|+|+.......++|..|++||+++||||+||+|+||...|..|...++|+||++.|+++.|.++.
T Consensus 138 DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~ 217 (386)
T PLN02808 138 DAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMT 217 (386)
T ss_pred HHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHH
Confidence 99999999999999999988766778899999999999999999999999988888999899999999999999999999
Q ss_pred HHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhchHHHHhhcccC
Q 038817 161 SLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIAVNQDKL 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~~~iai~qd~l 240 (303)
++++.+..++++++||+|||||||+||+++||.+|+||||+||||++||||+|+||++++++.+++|+|+|+||||||++
T Consensus 218 ~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~l 297 (386)
T PLN02808 218 SRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKL 297 (386)
T ss_pred HHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCcc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEeeecCCeeEEEEEcCCCCEEEEEEeCCCCceEEEEEcccccccccCCCeeEEEecCC
Q 038817 241 GVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDIGLKLNHSTVVNARDLWQ 303 (303)
Q Consensus 241 g~~~~~v~~~~~~~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~~lGl~~~~~~~~~v~DlW~ 303 (303)
|+++++|...++.+||.+++++|+++|+|||+++++++++++|++||| .....++|||||+
T Consensus 298 G~~~~~v~~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl--~~~~~~~vrDlWs 358 (386)
T PLN02808 298 GVQGKKVKKDGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGL--NSSAVVNARDLWA 358 (386)
T ss_pred ccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCC--CCCCceEEEECCC
Confidence 999999998889999999999999999999999999999999999999 6666899999996
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=2.7e-95 Score=687.22 Aligned_cols=300 Identities=68% Similarity=1.213 Sum_probs=288.3
Q ss_pred CccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
|+++||+++||+||+|||||+...||+.|+|+||++|||+|||+|++|||++|||||||+++|+.+|++ +|||++|++.
T Consensus 89 ~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~-~pGS~g~e~~ 167 (427)
T PLN02229 89 LVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQV-RPGSLFHEVD 167 (427)
T ss_pred HHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCC-CCCCccHHHH
Confidence 578999999999999999999888999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHH
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMT 160 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~ 160 (303)
|+++|++|||||||+|+|+.......++|..|++||+++||||+||+|+||...|+.|..+++|+||+++||++.|+++.
T Consensus 168 DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~ 247 (427)
T PLN02229 168 DADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMT 247 (427)
T ss_pred HHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHH
Confidence 99999999999999999988777788999999999999999999999999998898998899999999999999999999
Q ss_pred HHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhchHHHHhhcccC
Q 038817 161 SLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIAVNQDKL 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~~~iai~qd~l 240 (303)
++++.+..|+++++||+|||||||+||+.+||.+|+||||+||||++||||+|+||++++++.+++|+|+||||||||++
T Consensus 248 ~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~l 327 (427)
T PLN02229 248 TIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPL 327 (427)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhccccc
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEeeecC---CeeEEEEEcCCCCEEEEEEeCCCCceEEEEEcccccccccCCCeeEEEecCC
Q 038817 241 GVQGKKVKKEG---DLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDIGLKLNHSTVVNARDLWQ 303 (303)
Q Consensus 241 g~~~~~v~~~~---~~~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~~lGl~~~~~~~~~v~DlW~ 303 (303)
|++++++...+ ..+||.+++++|+++|+|||+++++++++++|++||| .++..++|||||+
T Consensus 328 G~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl--~~~~~~~VrDLW~ 391 (427)
T PLN02229 328 GVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGL--ESSISVSVRDLWK 391 (427)
T ss_pred ccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCC--CCCCceEEEECCC
Confidence 99999997653 4899999999999999999999999999999999999 6666799999996
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=4e-95 Score=683.34 Aligned_cols=301 Identities=69% Similarity=1.257 Sum_probs=290.3
Q ss_pred CccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
|++.||+++||+||+|||||+...||+.|+|+||++|||+|||+|++|||++|||||||+++|..+|..++|||++|++.
T Consensus 82 ~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~ 161 (412)
T PLN02692 82 LVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQ 161 (412)
T ss_pred HHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHH
Confidence 47889999999999999999998899999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHH
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMT 160 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~ 160 (303)
|+++|++|||||||+|+|+..+....++|..|++||+++||||+||+|+||...|+.|..+++|+||++.|+++.|+++.
T Consensus 162 DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~ 241 (412)
T PLN02692 162 DAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMI 241 (412)
T ss_pred HHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHH
Confidence 99999999999999999987766677899999999999999999999999998899999899999999999999999999
Q ss_pred HHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhchHHHHhhcccC
Q 038817 161 SLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIAVNQDKL 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~~~iai~qd~l 240 (303)
++++.+..++++++||+|||||||+||+++||.+|+|||||||||++||||+|+||++++++.+++|+|+|+||||||++
T Consensus 242 ~~~~~~~~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~l 321 (412)
T PLN02692 242 SRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPL 321 (412)
T ss_pred HHHHHHHHHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCcc
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEeeecCCeeEEEEEcCCCCEEEEEEeCCCCceEEEEEcccccccccCCCeeEEEecCC
Q 038817 241 GVQGKKVKKEGDLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSDIGLKLNHSTVVNARDLWQ 303 (303)
Q Consensus 241 g~~~~~v~~~~~~~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~~lGl~~~~~~~~~v~DlW~ 303 (303)
|+|++++...++.+||.+++++|+++|+|||+++.+++++++|++||| ..+..++|||||+
T Consensus 322 G~q~~~v~~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl--~~~~~~~vrDLW~ 382 (412)
T PLN02692 322 GVQAKKVRMEGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGI--PANSIVEARDLWE 382 (412)
T ss_pred ccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCC--CCCCceEEEECCC
Confidence 999999988889999999999999999999999999999999999999 6656799999996
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-81 Score=570.26 Aligned_cols=300 Identities=60% Similarity=1.065 Sum_probs=284.0
Q ss_pred CccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 1 MVTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
||++|++++||+||+|||||....||+.|++++++++||+|++++++|+|++|||||||.+.|..||++ +|||+.|++.
T Consensus 69 mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g-~PGS~~~e~~ 147 (414)
T KOG2366|consen 69 MVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAG-YPGSLGHEES 147 (414)
T ss_pred HHHhHHHhcCcEEEechhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhcc-CCcccchhhh
Confidence 689999999999999999999999999999999999999999999999999999999999999999965 9999999999
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCcc-------cccccCeEeecCCCC
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATW-------APKIGNSWRTTGDIK 153 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~-------~~~~~~~~Ris~D~~ 153 (303)
|+++|++|||||+|+|.|+.......++|..|.+||+++||||+||+|+||...++.| ..+++|+||+.+|+.
T Consensus 148 DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~ 227 (414)
T KOG2366|consen 148 DAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQ 227 (414)
T ss_pred hhhhhHhhCCcEEeccccccccccccccchhHHHHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhh
Confidence 9999999999999999999988889999999999999999999999999998887777 568899999999999
Q ss_pred CchhhHHHHHH----hhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhc
Q 038817 154 DNWNSMTSLAD----QNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229 (303)
Q Consensus 154 ~~w~~~~~~~~----~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N 229 (303)
++|.++.++++ .+..++.+++||+|||||||++||.++|.+|+++||++||++++||++|+|++.++++.+++|+|
T Consensus 228 dtW~Sv~~I~d~~~~nqd~~~~~agPg~WNDpDmL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~n 307 (414)
T KOG2366|consen 228 DTWKSVDSIIDYICWNQDRIAPLAGPGGWNDPDMLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQN 307 (414)
T ss_pred hHHHHHHHHHHHHhhhhhhhccccCCCCCCChhHhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcC
Confidence 99999999988 55678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccCCCccEEeeecC-CeeEEEEEcCCCCEEEEEEeCC--CCceEEE-EEcccccccccCCCeeEEEecCC
Q 038817 230 KEVIAVNQDKLGVQGKKVKKEG-DLEVWAGPLSGNRVAVVLWNRG--SSKATVT-ANWSDIGLKLNHSTVVNARDLWQ 303 (303)
Q Consensus 230 ~~~iai~qd~lg~~~~~v~~~~-~~~vw~~~l~~g~~~va~fN~~--~~~~~~~-~~~~~lGl~~~~~~~~~v~DlW~ 303 (303)
+++|+|||||+|.|+|.+..++ +.+||.+|++..++||+++|+. ..+..++ +.|.++|+ .....|+++|||+
T Consensus 308 k~~IaiNQDplgiqGr~i~~e~~~ievw~~pls~~~~Ava~lNr~~~~~~~~It~~~l~~~g~--~~~~~~~~~dLw~ 383 (414)
T KOG2366|consen 308 KEVIAINQDPLGIQGRKIVLEGDSIEVWSGPLSGKSVAVAFLNRRKTGIPARITAASLRELGL--TNPASYTAHDLWS 383 (414)
T ss_pred hhheeccCCccchhheeeeecCCceEEEeeccCCceEEEEEecccCCCCCccccHHHHhhcCC--CCCceeEeeehhh
Confidence 9999999999999999998444 4999999999989999999998 4567787 78999999 6678999999996
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=1.9e-74 Score=536.52 Aligned_cols=241 Identities=34% Similarity=0.568 Sum_probs=211.7
Q ss_pred CccccchhcCccEEEEcccccCC----------------CCCCCCCcccCCCCCCC-----cHHHHHHHHHHcCCEEEEE
Q 038817 1 MVTSGLAALGYQYINLDDCWAEL----------------NRDSTGNFVPKASAFPA-----GIKALADYVHAKGLKLGIY 59 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~----------------~~d~~G~~~~~~~~FP~-----G~~~l~~~ih~~Glk~Giy 59 (303)
|+++||+++||+||+|||||+.. .||++|+++||++|||+ |||+||+|||+||||||||
T Consensus 26 ~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGIY 105 (357)
T PLN03231 26 IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGIH 105 (357)
T ss_pred HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcceEEE
Confidence 57899999999999999999864 26889999999999999 9999999999999999999
Q ss_pred ecCCCcccCC-------CCC----------------------------------CccchHHHHHHHHHHcCccEEEeecC
Q 038817 60 SDAGTQTCSK-------TMP----------------------------------GSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 60 ~~pg~~~c~~-------~~p----------------------------------g~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+++|+.+|+. .+| |+++|+++++++|++|||||||+|+|
T Consensus 106 ~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~WGVDylK~D~c 185 (357)
T PLN03231 106 VMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYASWGIDFIKHDCV 185 (357)
T ss_pred ecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHHhCCCEEeeccc
Confidence 9999999961 133 44556788999999999999999999
Q ss_pred CCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCccc---ccccCeEeecCCCCCchhhHHHHHHhhcccc-----
Q 038817 99 FNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWA---PKIGNSWRTTGDIKDNWNSMTSLADQNDKWA----- 170 (303)
Q Consensus 99 ~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~---~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~----- 170 (303)
+.......++|..|++||+++||||+||+|. |...++.|. .+++|+||+++||++.|+++.++++....++
T Consensus 186 ~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~-g~~~~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~~~~~~~~~~ 264 (357)
T PLN03231 186 FGAENPQLDEILTVSKAIRNSGRPMIYSLSP-GDGATPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVARDFAAAGLI 264 (357)
T ss_pred CCCCcccHHHHHHHHHHHHHhCCCeEEEecC-CCCCCchhhhhhhhhcCcccccCCcccchhhHHHHHHHHHHHhhhccc
Confidence 8655566789999999999999999999997 333334443 4678999999999999999998887653333
Q ss_pred ---cccCCCCcCCCcceecC-------------CCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhchHHHH
Q 038817 171 ---SYAGPGGYNDPDMLEVG-------------NGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVIA 234 (303)
Q Consensus 171 ---~~~~~~~~nDpD~l~vg-------------~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~~~ia 234 (303)
.+++||+|||||||+|| +++||.+|+|||||||||++||||+|+||++++++.++||+|+||||
T Consensus 265 ~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~SPLiiG~DL~~~~~~tl~iLtN~evIA 344 (357)
T PLN03231 265 AIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKSPLMFGGDLRRLDNETLSLLTNPTVLE 344 (357)
T ss_pred ccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhCchhhcCCcccCCHHHHHHhcChHHhe
Confidence 35789999999999999 35799999999999999999999999999999999999999999999
Q ss_pred hhcccCCC
Q 038817 235 VNQDKLGV 242 (303)
Q Consensus 235 i~qd~lg~ 242 (303)
||||++|.
T Consensus 345 INQD~lG~ 352 (357)
T PLN03231 345 VNSHSTGN 352 (357)
T ss_pred ecCCcccc
Confidence 99999974
No 6
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=3.9e-70 Score=528.22 Aligned_cols=240 Identities=30% Similarity=0.533 Sum_probs=206.0
Q ss_pred CccccchhcCccEEEEcccccCC-------------CCCCCCCcccCCCCCCC-----cHHHHHHHHHHcCCEEEEEecC
Q 038817 1 MVTSGLAALGYQYINLDDCWAEL-------------NRDSTGNFVPKASAFPA-----GIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 1 ~~~~gl~~~Gy~~v~iDdgW~~~-------------~~d~~G~~~~~~~~FP~-----G~~~l~~~ih~~Glk~Giy~~p 62 (303)
|+++||+++||+||+|||||+.. .||++|+++||++|||+ |||+||||||+||||||||+++
T Consensus 56 ~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~ 135 (633)
T PLN02899 56 IVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMR 135 (633)
T ss_pred HHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecC
Confidence 46889999999999999999864 25789999999999998 9999999999999999999999
Q ss_pred CCcccCC-------------C---------------------------------CCCccchHHHHHHHHHHcCccEEEee
Q 038817 63 GTQTCSK-------------T---------------------------------MPGSLGHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 63 g~~~c~~-------------~---------------------------------~pg~~~~~~~~~~~~~~wGvdylK~D 96 (303)
|+.+|+. . ++|.++|++.++++|++|||||||+|
T Consensus 136 Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD 215 (633)
T PLN02899 136 GISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHD 215 (633)
T ss_pred CCcccccccCCccccccccccccccccccchhhccccccccccCCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEc
Confidence 9866631 0 13446778888999999999999999
Q ss_pred cCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCccc---ccccCeEeecCCCCCchhhHHHHHHhhccccccc
Q 038817 97 NCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWA---PKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYA 173 (303)
Q Consensus 97 ~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~---~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~ 173 (303)
+|+... ...+.|..|++||+++||||+||+|. |...++.|. .+++|||||++|+++.|.++..+++....|+.++
T Consensus 216 ~c~~~~-~~~~ey~~ms~AL~aTGRPIvySLsp-G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~ 293 (633)
T PLN02899 216 CVFGDD-FDLEEITYVSEVLKELDRPIVYSLSP-GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAG 293 (633)
T ss_pred CCCCCC-CChHHHHHHHHHHHHhCCCeEEEecC-CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHHHHHhhcc
Confidence 997643 34567999999999999999999996 444444554 4678999999999999999998887655554322
Q ss_pred -------CCCCcCCCcceecCC-------------CCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhchHHH
Q 038817 174 -------GPGGYNDPDMLEVGN-------------GGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNKEVI 233 (303)
Q Consensus 174 -------~~~~~nDpD~l~vg~-------------~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~~~i 233 (303)
++++|||||||+||. .+||.+|+||||+||||++||||+|+||++++++.+++|+|+|||
T Consensus 294 ~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVI 373 (633)
T PLN02899 294 LIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKTQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLL 373 (633)
T ss_pred ccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHHHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHe
Confidence 245899999999992 259999999999999999999999999999999999999999999
Q ss_pred HhhcccCCC
Q 038817 234 AVNQDKLGV 242 (303)
Q Consensus 234 ai~qd~lg~ 242 (303)
||||++++.
T Consensus 374 AINQds~~n 382 (633)
T PLN02899 374 EINSHSSNN 382 (633)
T ss_pred EEccCccCC
Confidence 999998753
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.97 E-value=3.1e-31 Score=252.01 Aligned_cols=260 Identities=22% Similarity=0.364 Sum_probs=160.5
Q ss_pred cccchhcCccEEEEcccccCCCCC---CCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc-----cC------
Q 038817 3 TSGLAALGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT-----CS------ 68 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW~~~~~d---~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~-----c~------ 68 (303)
.+.++++||++|+|||||+....+ ..|+|.+|++|||+||++|+++||++|||||||++|+... +.
T Consensus 64 a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~ 143 (394)
T PF02065_consen 64 ADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWV 143 (394)
T ss_dssp HHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGB
T ss_pred HHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccce
Confidence 356789999999999999985222 3599999999999999999999999999999999998521 10
Q ss_pred ------------------CCCCCccchHHHHH-HHHHHcCccEEEeecCCCCC---CC----ccchhH----HHHHHHHh
Q 038817 69 ------------------KTMPGSLGHEEQDA-KTFASWGVDYLKYDNCFNTG---TS----PKERYP----IMSKALLN 118 (303)
Q Consensus 69 ------------------~~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~~---~~----~~~~y~----~~~~al~~ 118 (303)
-++|++++|+...+ +.+++|||||||+||+.... .. ...+|. ++.++|++
T Consensus 144 l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~ 223 (394)
T PF02065_consen 144 LRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRA 223 (394)
T ss_dssp TCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 02566778876655 55899999999999986531 11 122333 48889999
Q ss_pred cCCCeEEEeccCCCCC--cCcccccccCeEeecCCCCCchhhHHHHHHhhcccccccCCCCc--CCCcceecCCCCCChH
Q 038817 119 SGRPIFFSLCEWGRED--PATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGY--NDPDMLEVGNGGMTTE 194 (303)
Q Consensus 119 ~g~~i~~~~c~~g~~~--~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~~~~~~--nDpD~l~vg~~~lt~~ 194 (303)
..++++++.|++|... +++ -.+.+..-+| |..+.++++.-. .......+....+.| .-|.+ .+ .+.++-
T Consensus 224 ~~P~v~iE~CssGG~R~D~g~--l~~~~~~w~S-D~tda~~R~~iq-~g~s~~~p~~~~~~hv~~~p~~-~~--~r~~~l 296 (394)
T PF02065_consen 224 RFPDVLIENCSSGGGRFDPGM--LYYTPQSWTS-DNTDALERLRIQ-YGTSLFYPPEYMGAHVSASPNH-QT--GRTTPL 296 (394)
T ss_dssp HTTTSEEEE-BTTBTTTSHHH--HCCSSEEESB-ST-SHHHHHHHH-HHHCTTSSGGGEEEEEEHSS-T-TT--HHHGGH
T ss_pred hCCCcEEEeccCCCCccccch--heeccccccC-CccchHHHhhhh-cccccccCHHHhCCeEEecccc-cc--CCcccc
Confidence 9999999999988643 332 2566665566 556666665432 222222222222222 11111 11 124566
Q ss_pred HHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhch-----HHHHhhcccCCCccEEeee-cCCeeEEEEEcCCCCEEEE
Q 038817 195 EYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSNK-----EVIAVNQDKLGVQGKKVKK-EGDLEVWAGPLSGNRVAVV 268 (303)
Q Consensus 195 E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N~-----~~iai~qd~lg~~~~~v~~-~~~~~vw~~~l~~g~~~va 268 (303)
+.|+++++| +.+.++.||+++++++++.++.. ++..+-|. |...++... .++...|.-..++++.+|+
T Consensus 297 ~~r~~~a~~----g~~g~e~dl~~ls~~e~~~~~~~ia~YK~~r~li~~--G~~yrL~~p~~~~~~~~~~v~~d~~~av~ 370 (394)
T PF02065_consen 297 EFRAHVAMF----GRLGLELDLTKLSEEELAAVKEQIAFYKSIRPLIQS--GDFYRLDSPDDSNWDAWQVVSPDKSEAVV 370 (394)
T ss_dssp HHHHHHHTC----SEEEEESTGCGS-HHHHHHHHHHHHHHHHCHHHHHH--SEEEECCTTCCHCEEEEEEE-TTSSEEEE
T ss_pred eechhhhhc----CCceeccCcccCCHHHHHHHHHHHHHHHhHHHHhcC--CcEEEecCCCccceEEEEEEcCCCCEEEE
Confidence 667665444 68889999999999999777632 33344443 444443321 1245677766677766655
Q ss_pred -EEeCCCC
Q 038817 269 -LWNRGSS 275 (303)
Q Consensus 269 -~fN~~~~ 275 (303)
+|.....
T Consensus 371 ~~~~~~~~ 378 (394)
T PF02065_consen 371 FVFRLLSS 378 (394)
T ss_dssp EEEETSS-
T ss_pred EEEEcccC
Confidence 4555444
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=7.7e-18 Score=161.08 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=96.7
Q ss_pred ccchhcCccEEEEcccccCCCCC---CCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccC------------
Q 038817 4 SGLAALGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCS------------ 68 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d---~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~------------ 68 (303)
+.+|+.|+|.|+|||||+....| +.|+|..+.+|||+|+..+++.||++||+||||++|++..-.
T Consensus 316 k~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvv 395 (687)
T COG3345 316 KEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVV 395 (687)
T ss_pred HHHhhcCeEEEEEccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccchHHHhhCCCeEE
Confidence 45788999999999999975322 479999999999999999999999999999999999963210
Q ss_pred ---C-----------------------CCCCccchHHHHHHHHH-HcCccEEEeecCCCCCCCccchhH--HHHHHHHhc
Q 038817 69 ---K-----------------------TMPGSLGHEEQDAKTFA-SWGVDYLKYDNCFNTGTSPKERYP--IMSKALLNS 119 (303)
Q Consensus 69 ---~-----------------------~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~~~~~~y~--~~~~al~~~ 119 (303)
+ .++-++.+...+++.++ +||..++|+|+.+++.... ++|. .+-+.|+.-
T Consensus 396 k~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~q-qry~ly~l~~~l~~k 474 (687)
T COG3345 396 KVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQ-QRYQLYRLFDQLNLK 474 (687)
T ss_pred ecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccc-hHHHHHHHHHHhhhc
Confidence 0 01222344456778888 9999999999998875443 3344 334555566
Q ss_pred CCCeEEEeccCCC
Q 038817 120 GRPIFFSLCEWGR 132 (303)
Q Consensus 120 g~~i~~~~c~~g~ 132 (303)
.+.|.|+.|..|.
T Consensus 475 ~~~i~FeScasGg 487 (687)
T COG3345 475 FPHILFESCASGG 487 (687)
T ss_pred CCCchhhhhcccc
Confidence 6778888887664
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.61 E-value=3.4e-14 Score=141.61 Aligned_cols=269 Identities=16% Similarity=0.151 Sum_probs=159.1
Q ss_pred chhcC--ccEEEEcccccCCCCCC----------------CCCcccCCC--------CCCCcHHHHHHHHHH-cCCE-EE
Q 038817 6 LAALG--YQYINLDDCWAELNRDS----------------TGNFVPKAS--------AFPAGIKALADYVHA-KGLK-LG 57 (303)
Q Consensus 6 l~~~G--y~~v~iDdgW~~~~~d~----------------~G~~~~~~~--------~FP~G~~~l~~~ih~-~Glk-~G 57 (303)
|++-| .++|+||||||....+. .-.+..|++ .||.|||.+++.|++ .|+| .|
T Consensus 225 l~e~gip~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~ 304 (775)
T PLN02219 225 LSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVY 304 (775)
T ss_pred HHhCCCCceEEEEccCccccccccccccccccccchhhhhhccccccccccccccccCCCCcHHHHHHHHHhccCCcEEE
Confidence 44444 58999999999854331 112334432 589999999999996 5888 89
Q ss_pred EEecCCC-----c---------ccC----CCCCC-------------------------ccchHHHHHHHHHHcCccEEE
Q 038817 58 IYSDAGT-----Q---------TCS----KTMPG-------------------------SLGHEEQDAKTFASWGVDYLK 94 (303)
Q Consensus 58 iy~~pg~-----~---------~c~----~~~pg-------------------------~~~~~~~~~~~~~~wGvdylK 94 (303)
+|.+..- . .+. ...|| +..+|+.....+++-|||+||
T Consensus 305 VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVK 384 (775)
T PLN02219 305 VWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVK 384 (775)
T ss_pred EeeeccceecCcCCCCcccccccccccccccCCCccccCcchhhhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9986321 0 000 00122 235667777888999999999
Q ss_pred eecCCC-----CCCCc-cchhHHHHHHHHhc------CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHH-
Q 038817 95 YDNCFN-----TGTSP-KERYPIMSKALLNS------GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTS- 161 (303)
Q Consensus 95 ~D~~~~-----~~~~~-~~~y~~~~~al~~~------g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~- 161 (303)
+|.... .+... .+.-++..+||+++ +..+ ++ |+.-. ....|........|+|+|-.+.+..--.
T Consensus 385 VDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~-I~-CMsh~-~d~i~~~k~sav~R~SDDF~P~dP~sh~~ 461 (775)
T PLN02219 385 VDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGC-IS-CMCHN-TDGLYSAKQTAVVRASDDFYPRDPASHTI 461 (775)
T ss_pred EchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCe-EE-ecccC-chhhhcccccceeecccccccCCCccCcc
Confidence 998652 11111 22223445566532 3334 44 65322 1234555778899999999876543111
Q ss_pred HHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhh--chHHHHhhccc
Q 038817 162 LADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILS--NKEVIAVNQDK 239 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~--N~~~iai~qd~ 239 (303)
++-.++.-+-..+.-.|+|-||.+..++ -.+.|.+.-|+.|+|+++||.+-+-+-+.+.=|. +..|+.....
T Consensus 462 Hi~~nAyNSLllg~~v~PDWDMFqS~Hp-----~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p- 535 (775)
T PLN02219 462 HISSVAYNTLFLGEFMQPDWDMFHSLHP-----AAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP- 535 (775)
T ss_pred hhhhhhhhhHHhccccccCchhceecCc-----cHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC-
Confidence 1111111112223347999999986553 4489999999999999999998877655554332 3334433221
Q ss_pred CCCccEEee-ec------CCeeEEEEEcCCCCEEEEEEeCCCCc-----------------eEEEEEcccc
Q 038817 240 LGVQGKKVK-KE------GDLEVWAGPLSGNRVAVVLWNRGSSK-----------------ATVTANWSDI 286 (303)
Q Consensus 240 lg~~~~~v~-~~------~~~~vw~~~l~~g~~~va~fN~~~~~-----------------~~~~~~~~~l 286 (303)
|.+-+-.. .+ .-..||... .+.-+|++||-.... .+-.+...++
T Consensus 536 -g~PTrDclF~Dp~~dg~slLKIwn~n--~~~gviG~FNcqGagW~~~~~~~~~~~~~~~~~s~~v~~~Dv 603 (775)
T PLN02219 536 -GRPTRDCLFADPARDGTSLLKIWNVN--KCTGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTGSVCADDV 603 (775)
T ss_pred -CCcchhhhccccCCCCceEEEEEEcc--cccceEEEEeccCCCCCchhhccccccCCCcceEEEEcchhc
Confidence 32211111 11 125788744 445699999986443 5556677777
No 10
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.55 E-value=2e-13 Score=136.35 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=150.9
Q ss_pred chhcC--ccEEEEcccccCCCCCCCC----------------CcccCCCCCC-------------CcHHHHHHHHHH-cC
Q 038817 6 LAALG--YQYINLDDCWAELNRDSTG----------------NFVPKASAFP-------------AGIKALADYVHA-KG 53 (303)
Q Consensus 6 l~~~G--y~~v~iDdgW~~~~~d~~G----------------~~~~~~~~FP-------------~G~~~l~~~ih~-~G 53 (303)
|++-| .++|+||||||....|..+ ++.+|+ ||| .|||.+++.|++ .|
T Consensus 229 l~~~g~p~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~ 307 (758)
T PLN02355 229 LEKGGVTPKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHS 307 (758)
T ss_pred HHhCCCCccEEEEeccccccccccccccccccccchhhhhhccccccc-cccccccccccccCCCCcHHHHHHHHHhhcC
Confidence 44444 5899999999985333222 234454 777 499999999997 58
Q ss_pred CE-EEEEecCC---------Cc------cc---CCCCCC-------------------------ccchHHHHHHHHHHcC
Q 038817 54 LK-LGIYSDAG---------TQ------TC---SKTMPG-------------------------SLGHEEQDAKTFASWG 89 (303)
Q Consensus 54 lk-~Giy~~pg---------~~------~c---~~~~pg-------------------------~~~~~~~~~~~~~~wG 89 (303)
+| .|+|.+.. .. +- ....|| +..+++.....+++-|
T Consensus 308 vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~G 387 (758)
T PLN02355 308 LKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEPCDALESITTNGLGLVNPEKVFSFYNELHSYLASAG 387 (758)
T ss_pred CcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCcchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcC
Confidence 88 89998632 10 00 000122 2345666777889999
Q ss_pred ccEEEeecCCCC-----CCCc-cchhHHHHHHHHhc------CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchh
Q 038817 90 VDYLKYDNCFNT-----GTSP-KERYPIMSKALLNS------GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN 157 (303)
Q Consensus 90 vdylK~D~~~~~-----~~~~-~~~y~~~~~al~~~------g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~ 157 (303)
||+||+|....- +... .+.-++..+||+++ +..+ ++ |+.-. +...|........|+|+|-.+.+.
T Consensus 388 VDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ngv-I~-CMs~~-~d~i~~~k~sav~R~SDDF~P~dP 464 (758)
T PLN02355 388 IDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPDNGI-IS-CMSHN-TDGLYSAKRTAVIRASDDFWPRDP 464 (758)
T ss_pred CCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCCCce-EE-ecccC-chhhcccccceeeeeccccccCCC
Confidence 999999986431 1111 22223455565532 3444 44 65322 123455577899999999987664
Q ss_pred hHHH-HHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhh--chHHHH
Q 038817 158 SMTS-LADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILS--NKEVIA 234 (303)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~--N~~~ia 234 (303)
..-. ++-.++.-+-..+.-.|+|-||.+..++ -.+.|.+.-|++|+|+++||.+-+-+-+.+.=|. +-.|+.
T Consensus 465 ~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~hp-----~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR 539 (758)
T PLN02355 465 ASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHP-----MAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILR 539 (758)
T ss_pred ccCchhhhhhhhhhhhhccccccCcccceecCc-----cHHHHHHHHhccCCcEEEecCCCCccHHHHHhhhCCCCceec
Confidence 3211 1111111122234457999999986542 3679999999999999999998877655554332 333443
Q ss_pred hhcccCCCccEEee----ecC------CeeEEEEEcCCCCEEEEEEeCC
Q 038817 235 VNQDKLGVQGKKVK----KEG------DLEVWAGPLSGNRVAVVLWNRG 273 (303)
Q Consensus 235 i~qd~lg~~~~~v~----~~~------~~~vw~~~l~~g~~~va~fN~~ 273 (303)
... +++|.+ .++ -..||. +..++-+|++||-.
T Consensus 540 ~~~-----pg~PtrDclF~Dp~~dg~slLKIwn--~nk~sGviG~FNcq 581 (758)
T PLN02355 540 AKL-----PGRPTRDCLFSDPARDGKSLLKIWN--LNEFTGVIGVFNCQ 581 (758)
T ss_pred ccc-----CCCcchhhhccccccCCceEEEEEE--cCCcccEEEEEecc
Confidence 322 233332 111 145676 44556699999964
No 11
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.54 E-value=2.1e-13 Score=136.93 Aligned_cols=256 Identities=20% Similarity=0.256 Sum_probs=150.2
Q ss_pred cchhcCc--cEEEEcccccCCCCCCC------------C-----Cc---------ccC-----CCCCCCcHHHHHHHHHH
Q 038817 5 GLAALGY--QYINLDDCWAELNRDST------------G-----NF---------VPK-----ASAFPAGIKALADYVHA 51 (303)
Q Consensus 5 gl~~~Gy--~~v~iDdgW~~~~~d~~------------G-----~~---------~~~-----~~~FP~G~~~l~~~ih~ 51 (303)
.|++.|. .+++||||||...++.. | +| +.+ ++.||.||+.++++|++
T Consensus 220 ~L~~~gi~~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~kF~~~~~~~~~~~~~~GL~~~V~~ik~ 299 (747)
T PF05691_consen 220 SLEEGGIPPRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSKFRAYKSGKSPEAFPSGLKHFVSDIKE 299 (747)
T ss_pred HHHhCCCCceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhhhhhccCCCcccCCcccHHHHHHHHHh
Confidence 4666675 59999999997543321 1 11 111 24699999999999999
Q ss_pred c--CCE-EEEEecCC-----Ccc---------cC--CCCCC-------------------------ccchHHHHHHHHHH
Q 038817 52 K--GLK-LGIYSDAG-----TQT---------CS--KTMPG-------------------------SLGHEEQDAKTFAS 87 (303)
Q Consensus 52 ~--Glk-~Giy~~pg-----~~~---------c~--~~~pg-------------------------~~~~~~~~~~~~~~ 87 (303)
+ |+| +|+|.+.. +.. +. ...|| .+.+|+.....+++
T Consensus 300 ~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~~~FYd~~hsyL~s 379 (747)
T PF05691_consen 300 KFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDAFRFYDDFHSYLAS 379 (747)
T ss_pred hCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHHHHHHHHHHHHHHH
Confidence 9 898 89998631 100 00 00111 23456777788899
Q ss_pred cCccEEEeecCCCC-----CCCc-cchhHHHHHHHHh----c--CCCeEEEeccCCCCCcCccc-ccccCeEeecCCCCC
Q 038817 88 WGVDYLKYDNCFNT-----GTSP-KERYPIMSKALLN----S--GRPIFFSLCEWGREDPATWA-PKIGNSWRTTGDIKD 154 (303)
Q Consensus 88 wGvdylK~D~~~~~-----~~~~-~~~y~~~~~al~~----~--g~~i~~~~c~~g~~~~~~~~-~~~~~~~Ris~D~~~ 154 (303)
-|||+||+|....- +... .+.-++..+||++ . +..+ ++ |+.-. +...|. .......|+|+|-.+
T Consensus 380 ~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~v-I~-CMsh~-~~~l~~~~~~~av~R~SDDF~P 456 (747)
T PF05691_consen 380 AGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGV-IN-CMSHN-PDNLYHSTKQSAVVRNSDDFFP 456 (747)
T ss_pred cCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCe-EE-ecCCC-ccchhcccccccceeccccccC
Confidence 99999999986431 1111 2222334455542 2 3344 34 55322 122343 355678999999876
Q ss_pred chh----------hHHHHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHH
Q 038817 155 NWN----------SMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITF 224 (303)
Q Consensus 155 ~w~----------~~~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~ 224 (303)
.+. ...-++. ++.-+-+.+.-.|+|-||.+.-+ .-.+.|.++-|++|+|++|||.+-+.+-+.+
T Consensus 457 ~~p~s~p~g~~w~h~~Hi~~-nAyNsL~~g~~~~PDwDMF~S~h-----~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LL 530 (747)
T PF05691_consen 457 RDPASDPNGVFWLHTWHIAH-NAYNSLLLGQFVWPDWDMFQSSH-----PAAEFHAAARAISGGPVYISDKPGKHDFDLL 530 (747)
T ss_pred CCCCCCccccchhhHHHHHH-HHHHHHHHHhhcCCCcccccccC-----ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHH
Confidence 433 1111221 11111222334789999998644 3467899999999999999999987766555
Q ss_pred Hhh--hchHHHHhhcccCCCccEEe-eec----C--CeeEEEEEcCCCCEEEEEEeCC
Q 038817 225 NIL--SNKEVIAVNQDKLGVQGKKV-KKE----G--DLEVWAGPLSGNRVAVVLWNRG 273 (303)
Q Consensus 225 ~~l--~N~~~iai~qd~lg~~~~~v-~~~----~--~~~vw~~~l~~g~~~va~fN~~ 273 (303)
+=| .+..++..... |.+-+-. ..+ + -..||...-.. -+|++||..
T Consensus 531 k~LvlpDG~ilR~~~p--g~Pt~d~Lf~dp~~d~~~lLKi~n~n~~~--gvig~FN~q 584 (747)
T PF05691_consen 531 KKLVLPDGSILRADHP--GRPTRDCLFEDPLRDGKSLLKIWNLNKFT--GVIGVFNCQ 584 (747)
T ss_pred HHhhCCCCceeccccC--CCCChhhhcccCCCCCceeEEEEecCCcc--ceEEEEecC
Confidence 433 34445544332 3222211 111 1 25677765333 489999975
No 12
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.52 E-value=7e-13 Score=132.20 Aligned_cols=253 Identities=18% Similarity=0.171 Sum_probs=151.8
Q ss_pred chhcC--ccEEEEcccccCCCCCCC------------CC---cccCCCCCCC------cHHHHHHHHH-HcCCE-EEEEe
Q 038817 6 LAALG--YQYINLDDCWAELNRDST------------GN---FVPKASAFPA------GIKALADYVH-AKGLK-LGIYS 60 (303)
Q Consensus 6 l~~~G--y~~v~iDdgW~~~~~d~~------------G~---~~~~~~~FP~------G~~~l~~~ih-~~Glk-~Giy~ 60 (303)
|++-| .++++||||||....+.. -+ +..+ .|||. |||.+++.|+ +.|+| .|+|.
T Consensus 228 l~~~g~p~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~~p~~Glk~~V~~iK~~~~vk~V~VWH 306 (750)
T PLN02684 228 LAAGGTPPKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKDDPNVGIKNIVNIAKEKHGLKYVYVWH 306 (750)
T ss_pred HHhCCCCceEEEEecccccccccccccccccccchhhhhhccCccc-cccccccCCCccHHHHHHHHHhhcCCcEEEEEe
Confidence 44444 589999999998643210 12 3344 68874 9999999998 55998 89998
Q ss_pred cCC---------Cc-----c-----cC------CCC----------CC--------ccchHHHHHHHHHHcCccEEEeec
Q 038817 61 DAG---------TQ-----T-----CS------KTM----------PG--------SLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 61 ~pg---------~~-----~-----c~------~~~----------pg--------~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
+.. .. . +. .+. +| +..+++.....+++-|||+||+|.
T Consensus 307 AL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~P~~~~~FYd~~hsyL~s~GVDgVKVD~ 386 (750)
T PLN02684 307 AITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVNPKKVYKFYNELHSYLADAGIDGVKVDV 386 (750)
T ss_pred eecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccCHHHHHHHHHHHHHHHHHcCCCeEEECh
Confidence 632 10 0 00 000 11 234667777889999999999998
Q ss_pred CCCC-----CCCc-cchhHHHHHHHHhc------CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHH-HHHH
Q 038817 98 CFNT-----GTSP-KERYPIMSKALLNS------GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMT-SLAD 164 (303)
Q Consensus 98 ~~~~-----~~~~-~~~y~~~~~al~~~------g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~-~~~~ 164 (303)
...- +... .+.-++..+||+++ +.. +++ |+.-. +...|........|+|+|-.+.+...- -++-
T Consensus 387 Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ng-vI~-CMs~~-~d~i~~sk~sav~R~SDDF~p~dP~sh~~Hi~ 463 (750)
T PLN02684 387 QCILETLGAGLGGRVELTRQYHQALDASVARNFPDNG-CIA-CMSHN-TDALYCSKQTAVVRASDDFYPRDPVSHTIHIA 463 (750)
T ss_pred hhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCC-eEE-ecccC-chhhhcccccceeeeccccccCCCccchhhhh
Confidence 6521 1111 12223445566532 222 345 65322 123455677899999999987554311 1111
Q ss_pred hhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhh--chHHHHhhcccCCC
Q 038817 165 QNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILS--NKEVIAVNQDKLGV 242 (303)
Q Consensus 165 ~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~--N~~~iai~qd~lg~ 242 (303)
.++.-+-..+.-.|+|-||.+..++ -.+.|.+.-|++|+|+++||.+-+-+-+.+.-|. +-.|+....
T Consensus 464 ~~AyNSLllg~~v~PDWDMFqS~hp-----~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~----- 533 (750)
T PLN02684 464 AVAYNSVFLGEFMQPDWDMFHSLHP-----AAEYHASARAISGGPLYVSDAPGKHNFELLKKLVLPDGSILRARL----- 533 (750)
T ss_pred hhhhhhhhhccccccCcccceecCc-----cHHHHHHHHhhcCCceEEecCCCCccHHHHHhhhCCCCccccccc-----
Confidence 1111122233347999999986553 4589999999999999999988876655554332 333443322
Q ss_pred ccEEe----eecC------CeeEEEEEcCCCCEEEEEEeCCC
Q 038817 243 QGKKV----KKEG------DLEVWAGPLSGNRVAVVLWNRGS 274 (303)
Q Consensus 243 ~~~~v----~~~~------~~~vw~~~l~~g~~~va~fN~~~ 274 (303)
+++|. ..++ -..||... .++-+|++||-..
T Consensus 534 pg~PTrDcLF~DP~~dg~slLKIwn~n--~~tGViG~FNcqG 573 (750)
T PLN02684 534 PGRPTRDCLFSDPARDGVSLLKIWNMN--KYTGVLGVYNCQG 573 (750)
T ss_pred CCccchhhhccCcccCCccEEEEEEec--CCCceEEEEeccC
Confidence 23443 2211 25678766 3445999999864
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.51 E-value=5.1e-13 Score=133.39 Aligned_cols=272 Identities=17% Similarity=0.148 Sum_probs=152.6
Q ss_pred cchhcC--ccEEEEcccccCCCCCC-------------CC--------CcccC---------CCCCCCcHHHHHHHHHHc
Q 038817 5 GLAALG--YQYINLDDCWAELNRDS-------------TG--------NFVPK---------ASAFPAGIKALADYVHAK 52 (303)
Q Consensus 5 gl~~~G--y~~v~iDdgW~~~~~d~-------------~G--------~~~~~---------~~~FP~G~~~l~~~ih~~ 52 (303)
.|++-| ..+++||||||.-..+. .| ++..| +..||.|||.+++.|+++
T Consensus 238 ~L~~~Gip~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~KF~~~~~~~~~~p~Glk~~v~~iK~~ 317 (777)
T PLN02711 238 GLVDGGCPPGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENYKFRDYVSPKSLSNKGMGAFIRDLKEE 317 (777)
T ss_pred HHHhCCCCccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccccccccccccCCCCCcHHHHHHHHHhh
Confidence 455556 48999999999742221 01 12334 445677999999999995
Q ss_pred --CCE-EEEEecCC---------Ccc------c-CCCCCC-------------------------ccchHHHHHHHHHHc
Q 038817 53 --GLK-LGIYSDAG---------TQT------C-SKTMPG-------------------------SLGHEEQDAKTFASW 88 (303)
Q Consensus 53 --Glk-~Giy~~pg---------~~~------c-~~~~pg-------------------------~~~~~~~~~~~~~~w 88 (303)
|+| .|+|.+.. ... . ....|| +..+|+.....+++-
T Consensus 318 ~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~~FY~~~hs~Las~ 397 (777)
T PLN02711 318 FKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAYQMYEGLHSHLQSV 397 (777)
T ss_pred CCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHHHHHHHHHHHHHHc
Confidence 787 89998632 100 0 000122 234566777888999
Q ss_pred CccEEEeecCCC----C-CCCc-cchhHHHHHHHH----h--cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCc-
Q 038817 89 GVDYLKYDNCFN----T-GTSP-KERYPIMSKALL----N--SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDN- 155 (303)
Q Consensus 89 GvdylK~D~~~~----~-~~~~-~~~y~~~~~al~----~--~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~- 155 (303)
|||+||+|-... . .... .+..++..+||+ + .++.+ ++ |+.-..+............|+|+|-.+.
T Consensus 398 GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~-I~-CMs~~~d~~~~~tk~~av~R~SDDF~p~d 475 (777)
T PLN02711 398 GIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGV-IA-SMEHCNDFMFLGTEAISLGRVGDDFWCTD 475 (777)
T ss_pred CCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCe-Ee-ecccCchhhhccCcccceeeecccccCCC
Confidence 999999997542 1 1111 122234455554 2 23334 44 6532211111112445789999998642
Q ss_pred ---------hhhHHHHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHh
Q 038817 156 ---------WNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNI 226 (303)
Q Consensus 156 ---------w~~~~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~ 226 (303)
|---. ++..++.-+-..+.-.|+|-||.+.-+ .-.+.|.+.-|++|+|+++||.+-+-+-+.+.=
T Consensus 476 P~sh~~g~~W~~~~-Hi~~~AyNSLllg~~v~PDWDMF~S~H-----p~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~ 549 (777)
T PLN02711 476 PSGDPNGTFWLQGC-HMVHCAYNSLWMGNFIHPDWDMFQSTH-----PCAEFHAASRAISGGPIYVSDSVGKHNFPLLKR 549 (777)
T ss_pred Cccccccccccccc-eeeeehhhhhhhcccccCCchhhhccC-----chHHHHHHHHhhcCCCEEEecCCCCccHHHHHh
Confidence 31000 111111112222334789999998654 366899999999999999999887765555543
Q ss_pred hh--chHHHHhhcccCCCccEEe-e----ecC--CeeEEEEEcCCCCEEEEEEeCCCCc-----------------eEEE
Q 038817 227 LS--NKEVIAVNQDKLGVQGKKV-K----KEG--DLEVWAGPLSGNRVAVVLWNRGSSK-----------------ATVT 280 (303)
Q Consensus 227 l~--N~~~iai~qd~lg~~~~~v-~----~~~--~~~vw~~~l~~g~~~va~fN~~~~~-----------------~~~~ 280 (303)
|. +-.|+..... |.+.|-. . +++ -..||...-.. -+|++||-.... .+-.
T Consensus 550 LvlpdGsIlR~~~p--g~PtrDcLF~DP~~dg~slLKIwn~nk~t--GviG~FNcqgagW~~~~~~~~~~~~~~~~vt~~ 625 (777)
T PLN02711 550 LVLPDGSILRCQYY--ALPTRDCLFEDPLHDGKTMLKIWNLNKFT--GVIGAFNCQGGGWCRETRRNKCASQFSHTVTAK 625 (777)
T ss_pred hhCCCCcEecccCC--CCccchhhccccccCCceEEEEEeecCCc--ceEEEEEecCCcccchhhhcccccCCCCceEEE
Confidence 32 2233333221 2222220 0 111 24677766333 499999974332 5556
Q ss_pred EEcccccc
Q 038817 281 ANWSDIGL 288 (303)
Q Consensus 281 ~~~~~lGl 288 (303)
|+..++..
T Consensus 626 v~~~Dv~w 633 (777)
T PLN02711 626 ASPKDIEW 633 (777)
T ss_pred EchHHhcc
Confidence 77777733
No 14
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.43 E-value=3.9e-12 Score=118.05 Aligned_cols=143 Identities=18% Similarity=0.310 Sum_probs=98.7
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc--------------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT-------------- 66 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~-------------- 66 (303)
.++++++| +++|+||++|+.. .|+++.|+++||+ ++.++++||++|+|+++|+.|+...
T Consensus 36 ~~~~~~~~iP~d~i~iD~~w~~~----~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~ 110 (303)
T cd06592 36 AQEIIDNGFPNGQIEIDDNWETC----YGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYL 110 (303)
T ss_pred HHHHHHcCCCCCeEEeCCCcccc----CCccccChhhCCC-HHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeE
Confidence 45677777 6899999999974 6899999999998 9999999999999999999997521
Q ss_pred ----cC-----------------CCCCCccchHHHHHHHHH-HcCccEEEeecCCCCCCC----------ccchhH-HHH
Q 038817 67 ----CS-----------------KTMPGSLGHEEQDAKTFA-SWGVDYLKYDNCFNTGTS----------PKERYP-IMS 113 (303)
Q Consensus 67 ----c~-----------------~~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~~----------~~~~y~-~~~ 113 (303)
++ -++|.+++++...++.+. ++|||++|+|++.....+ ....|. .+.
T Consensus 111 vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~ 190 (303)
T cd06592 111 VSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYA 190 (303)
T ss_pred EECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHH
Confidence 00 024556677777777665 999999999998753111 111233 334
Q ss_pred HHHHhcCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhH
Q 038817 114 KALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSM 159 (303)
Q Consensus 114 ~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~ 159 (303)
++..+.+ +++++=+.|..+ ..++-.| ++|...+|+..
T Consensus 191 ~~~~~~~-~~~~~Rsg~~g~------~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 191 EMVAEFG-DLIEVRAGWRSQ------GLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred HHHHhhc-cceEEEeeeecC------CCCeeEE--cCCCCCCCCCC
Confidence 4444444 666653433321 1223333 67999999876
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.36 E-value=8.3e-12 Score=116.08 Aligned_cols=152 Identities=20% Similarity=0.316 Sum_probs=107.0
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccC------------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCS------------ 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~------------ 68 (303)
.+.++++| ++.|+||++|+.. ...|++..|++|||+ +++++++||++|+|+++|+.|++....
T Consensus 30 ~~~~~~~~iP~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~ 106 (308)
T cd06593 30 ADGMRERNLPCDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYL 106 (308)
T ss_pred HHHHHHcCCCeeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeE
Confidence 45678888 7889999999953 223599999999998 999999999999999999999853110
Q ss_pred ----------------------CCCCCccchHHHHHHHHHHcCccEEEeecCCCC--------CCCc---cchh-----H
Q 038817 69 ----------------------KTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNT--------GTSP---KERY-----P 110 (303)
Q Consensus 69 ----------------------~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~--------~~~~---~~~y-----~ 110 (303)
-++|.+++++....+.+.++|||++|+|++..- +..+ ...| .
T Consensus 107 v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~ 186 (308)
T cd06593 107 VKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNK 186 (308)
T ss_pred EECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHH
Confidence 024556677777888888999999999998631 1111 1122 2
Q ss_pred HHHHHHHhc---CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 111 IMSKALLNS---GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 111 ~~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
.+.+++++. .|+++++=+.+... ..|+-.| ++|+..+|+.+...+..
T Consensus 187 ~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 187 AVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHHH
Confidence 344555543 35888874443211 2345455 88999999987766654
No 16
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.12 E-value=2e-09 Score=98.10 Aligned_cols=139 Identities=24% Similarity=0.356 Sum_probs=98.3
Q ss_pred ccchhcC--ccEEEEcccccCCCCCCCCCc--ccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHH
Q 038817 4 SGLAALG--YQYINLDDCWAELNRDSTGNF--VPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEE 79 (303)
Q Consensus 4 ~gl~~~G--y~~v~iDdgW~~~~~d~~G~~--~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~ 79 (303)
+++++.| ++.|.||++|+.. .|++ ..|+++||+ .+.++++||++|+|+.+|+.|++ +++..
T Consensus 31 ~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~l~~~g~~~~~~~~P~v----------~~w~~ 95 (265)
T cd06589 31 DGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDELHDNGVKLVLWIDPYI----------REWWA 95 (265)
T ss_pred HHHHHcCCCccEEEECcccccC----CceeeeecChhhCCC-HHHHHHHHHHCCCEEEEEeChhH----------HHHHH
Confidence 4556655 6899999999975 3555 899999999 99999999999999999999975 55666
Q ss_pred HHHHHH-HHcCccEEEeecCCCCCCC-----c-----------cchhH-----HHHHHHHh---cCCCeEEEeccCCCCC
Q 038817 80 QDAKTF-ASWGVDYLKYDNCFNTGTS-----P-----------KERYP-----IMSKALLN---SGRPIFFSLCEWGRED 134 (303)
Q Consensus 80 ~~~~~~-~~wGvdylK~D~~~~~~~~-----~-----------~~~y~-----~~~~al~~---~g~~i~~~~c~~g~~~ 134 (303)
..++.+ .+.|||++|+|++...... . ...|. .+.+++++ ..|+++++-+.+...
T Consensus 96 ~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs- 174 (265)
T cd06589 96 EVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGS- 174 (265)
T ss_pred HHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc-
Confidence 666554 8999999999997543111 0 11222 23455543 346887775543221
Q ss_pred cCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 135 PATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 135 ~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
..|+-.| ++|+..+|+.+...+..
T Consensus 175 -----qry~~~W--~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 175 -----QRYAGMW--SGDNTSTWGYLRSQIPA 198 (265)
T ss_pred -----cCcCcee--CCcccCCHHHHHHHHHH
Confidence 2454444 77999999998766654
No 17
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.12 E-value=1.2e-09 Score=109.62 Aligned_cols=179 Identities=17% Similarity=0.094 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHc--CCE-EEEEecCC---------CcccC------CCCCC-------------------------cc
Q 038817 39 PAGIKALADYVHAK--GLK-LGIYSDAG---------TQTCS------KTMPG-------------------------SL 75 (303)
Q Consensus 39 P~G~~~l~~~ih~~--Glk-~Giy~~pg---------~~~c~------~~~pg-------------------------~~ 75 (303)
|.|||.+++.|+++ |+| .++|.+.. ..... ...|| ..
T Consensus 389 ~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~ 468 (865)
T PLN02982 389 GSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAG 468 (865)
T ss_pred cccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHH
Confidence 35999999999887 576 78887632 10000 01122 23
Q ss_pred chHHHHHHHHHHcCccEEEeecCCCC-----CCCc-cchhHHHHHHH----Hhc--CCCeEEEeccCCCCCcCcc-cccc
Q 038817 76 GHEEQDAKTFASWGVDYLKYDNCFNT-----GTSP-KERYPIMSKAL----LNS--GRPIFFSLCEWGREDPATW-APKI 142 (303)
Q Consensus 76 ~~~~~~~~~~~~wGvdylK~D~~~~~-----~~~~-~~~y~~~~~al----~~~--g~~i~~~~c~~g~~~~~~~-~~~~ 142 (303)
.+|+.....+++-|||+||+|....- +... .+..++..+|| .+. ++.+ ++ |+.-... ..| ....
T Consensus 469 ~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~-I~-CM~~~~~-~~~~~tk~ 545 (865)
T PLN02982 469 DFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGI-IA-SMQQCND-FFFLGTKQ 545 (865)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCe-Ee-ecccCch-hhhccCCc
Confidence 46677778899999999999975421 1111 11122333444 333 2333 44 5532211 122 2345
Q ss_pred cCeEeecCCCCC------chhhHH---HHHHhhcccccccCCCCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeec
Q 038817 143 GNSWRTTGDIKD------NWNSMT---SLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIG 213 (303)
Q Consensus 143 ~~~~Ris~D~~~------~w~~~~---~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g 213 (303)
.-+-|+|+|-.+ .|..+. -++..++.-+-+.+.-.|+|-||.+..+ .-.+.|.+.-|+.|+|+++|
T Consensus 546 sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H-----~~A~fHAaaRAIsGGPIYvS 620 (865)
T PLN02982 546 ISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSDH-----LCAEFHAGSRAICGGPVYVS 620 (865)
T ss_pred ceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhccccC-----chHHHHHHHHhhcCCCEEEe
Confidence 567899999864 242211 0111111112223444789999988643 45689999999999999999
Q ss_pred cCCCCCCHHHHH
Q 038817 214 CDIRAMDKITFN 225 (303)
Q Consensus 214 ~dl~~l~~~~~~ 225 (303)
|.+-+-+-+.+.
T Consensus 621 D~pG~Hdf~lLk 632 (865)
T PLN02982 621 DSVGGHDFDLLK 632 (865)
T ss_pred eCCCCccHHHHH
Confidence 988876655544
No 18
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.01 E-value=5.5e-09 Score=97.63 Aligned_cols=154 Identities=16% Similarity=0.251 Sum_probs=103.5
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccC------------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCS------------ 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~------------ 68 (303)
.+++++.+ ++.|.||++|+.......+.+.-|+++||+ .+.++++||++|+|+-+|+.|.+....
T Consensus 35 ~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~ 113 (317)
T cd06599 35 IDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAF 113 (317)
T ss_pred HHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcE
Confidence 34566666 589999999997522234568889999998 999999999999999999999863211
Q ss_pred ------C-----------------CCCCccchHHHHH-HHHHHcCccEEEeecCCCC-----------CCC-----ccch
Q 038817 69 ------K-----------------TMPGSLGHEEQDA-KTFASWGVDYLKYDNCFNT-----------GTS-----PKER 108 (303)
Q Consensus 69 ------~-----------------~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~-----------~~~-----~~~~ 108 (303)
. ++|.++.+..... +.+.+.|||++|+|++... +.. ....
T Consensus 114 v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~ 193 (317)
T cd06599 114 IKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPV 193 (317)
T ss_pred EEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccc
Confidence 0 2455566666655 5678899999999998542 000 0112
Q ss_pred hH-----HHHHHHHhc---CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 109 YP-----IMSKALLNS---GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 109 y~-----~~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
|. +..+++.+. .|+++++=+.+... ..|+-.| ++|+..+|+.+...+..
T Consensus 194 y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~------qry~~~W--sGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 194 QPNLMARASHEAQAEHYPNRRPYIVSRSGFAGI------QRYAQTW--SGDNRTSWKTLRYNIAM 250 (317)
T ss_pred hHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccc------cCCcCee--CCCcccCHHHHHHHHHH
Confidence 21 234555433 46787764332211 2455555 88999999987766554
No 19
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.97 E-value=6.7e-09 Score=97.06 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=104.3
Q ss_pred ccchhcC--ccEEEEcccccCCCC--CCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCC----------
Q 038817 4 SGLAALG--YQYINLDDCWAELNR--DSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSK---------- 69 (303)
Q Consensus 4 ~gl~~~G--y~~v~iDdgW~~~~~--d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~---------- 69 (303)
+++++.| ++.|.||.+|+.... ...|.+..|+++||+ .+.++++||++|+|+-+|+.|++....+
T Consensus 31 ~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 31 KTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred HHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 4556666 699999999987432 246789999999999 9999999999999999999998532110
Q ss_pred -------------------------CCCCccchHHHHHHHHHHcCccEEEeecCCCCCC---------C---ccchhH--
Q 038817 70 -------------------------TMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT---------S---PKERYP-- 110 (303)
Q Consensus 70 -------------------------~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~---------~---~~~~y~-- 110 (303)
++|.++++..+..+.+.+.|||++|.|++..... . ....|.
T Consensus 110 l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~ 189 (317)
T cd06598 110 LLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHL 189 (317)
T ss_pred EEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHH
Confidence 2455667777777778899999999999864211 0 111232
Q ss_pred ---HHHHHHHh---cCCCeEEEeccCCCCCcCcccccccC-eEeecCCCCCchhhHHHHHHh
Q 038817 111 ---IMSKALLN---SGRPIFFSLCEWGREDPATWAPKIGN-SWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 111 ---~~~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~~~~~~~~~ 165 (303)
...+++++ ..||++++=+.+... ..|+. .| ++|+..+|+.+...+..
T Consensus 190 ~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~~W--sGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 190 WAKSIYEGYQQNYPNERPFILMRAGFAGS------QRYGVIPW--SGDVGRTWDGLKSQPNA 243 (317)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecCcCcc------ccCcCCcc--CCCCcCCHHHHHHHHHH
Confidence 23344443 246777754432111 24443 34 67999999988776654
No 20
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=98.92 E-value=1.6e-08 Score=95.30 Aligned_cols=150 Identities=20% Similarity=0.239 Sum_probs=102.4
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCC-----------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSK----------- 69 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~----------- 69 (303)
.+++++.| ++.|.||..|+.. .+.+..|+++||+ .+.+++.||++|+|+-+|..|.+..+..
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~----~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g 104 (339)
T cd06604 30 ADEFRERDIPCDAIYLDIDYMDG----YRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEND 104 (339)
T ss_pred HHHHHHhCCCcceEEECchhhCC----CCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCC
Confidence 35566666 6999999999964 5678999999998 9999999999999999999987642210
Q ss_pred -------------------------CCCCccchHHHHHHHHHHcCccEEEeecCCCCCC---------------------
Q 038817 70 -------------------------TMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT--------------------- 103 (303)
Q Consensus 70 -------------------------~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------------------- 103 (303)
++|.+.++.....+.+.+.|||++|+|++.....
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~ 184 (339)
T cd06604 105 YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGG 184 (339)
T ss_pred eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCC
Confidence 2344556677777778899999999999753210
Q ss_pred C---ccchhH-----HHHHHHHhc---CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 104 S---PKERYP-----IMSKALLNS---GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 104 ~---~~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
+ ....|. +..+++++. .|+++++=+.+... ..++-.| ++|+..+|+.+...+..
T Consensus 185 ~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~ssW~~L~~~i~~ 249 (339)
T cd06604 185 THEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGI------QRYAAVW--TGDNRSSWEHLRLSIPM 249 (339)
T ss_pred cHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccc------ccccccc--CCcccCCHHHHHHHHHH
Confidence 0 011222 233455433 47887764433221 1344444 77999999987766543
No 21
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=98.88 E-value=4.3e-08 Score=91.64 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=101.9
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccC------------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCS------------ 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~------------ 68 (303)
.+++++.+ ++.|.||..|+.. .+.+..|+++||+ .+.++++||++|+|+-+|..|++....
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 30 VDIMQKEGFPYDVVFLDIHYMDS----YRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHcCCCcceEEEChhhhCC----CCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 34566666 6999999999864 5778889999998 999999999999999999999863210
Q ss_pred -------C-----------------CCCCccchHHHHHHHHH-HcCccEEEeecCCCCCC-CccchhH-----HHHHHHH
Q 038817 69 -------K-----------------TMPGSLGHEEQDAKTFA-SWGVDYLKYDNCFNTGT-SPKERYP-----IMSKALL 117 (303)
Q Consensus 69 -------~-----------------~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~-~~~~~y~-----~~~~al~ 117 (303)
+ ++|.+.++....++.+. +.|||++|.|++..... .....|. +..++++
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~ 184 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFR 184 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHH
Confidence 0 23445556666666654 89999999999865321 1111232 2334454
Q ss_pred h---cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 118 N---SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 118 ~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
+ ..|+++++=+.+... ..|+-.| ++|+..+|+.+...+..
T Consensus 185 ~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~~ 227 (317)
T cd06600 185 TSHPRNRIFILTRSGFAGS------QKYAAIW--TGDNTASWDDLKLSIPL 227 (317)
T ss_pred HhcCCCCceEEEecccccc------CCccceE--CCcccccHHHHHHHHHH
Confidence 3 357888875544322 1344333 77999999987765543
No 22
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.87 E-value=3.9e-08 Score=92.38 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=104.0
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc----cCC------C
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT----CSK------T 70 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~----c~~------~ 70 (303)
.+++++.+ ++.|.+|..|+.. .+.++.|+++||+ .+.++++||++|+|..+++.|++.. +.. +
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~----~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDft 104 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDN----YRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLG 104 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcC----CCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCC
Confidence 34555555 6999999999964 5789999999999 9999999999999999999998641 111 3
Q ss_pred CCCccchHHHHHHHHHHcCccEEEeecCCCCC---------CC--------c-------------cchhH-----HHHHH
Q 038817 71 MPGSLGHEEQDAKTFASWGVDYLKYDNCFNTG---------TS--------P-------------KERYP-----IMSKA 115 (303)
Q Consensus 71 ~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~---------~~--------~-------------~~~y~-----~~~~a 115 (303)
+|.++++.....+.+.+-|||+++.|+..... .+ . ...|. +..++
T Consensus 105 np~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~ 184 (332)
T cd06601 105 RPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHG 184 (332)
T ss_pred CHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHH
Confidence 56677777777788888999999999864210 00 0 00121 23344
Q ss_pred HHh-----cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHH
Q 038817 116 LLN-----SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD 164 (303)
Q Consensus 116 l~~-----~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~ 164 (303)
+++ ..||++++=+.+... ..|+-.| ++|+..+|+.+...+.
T Consensus 185 ~~~~~~~~~~RpfiltRS~~aGs------qrY~~~W--sGDn~stW~~L~~si~ 230 (332)
T cd06601 185 LNNLNARKNKRNFIIGRGSYAGM------QRFAGLW--TGDNSSSWDFLQINIA 230 (332)
T ss_pred HHHhhcCCCCCcEEEEecCcCcc------CCcCcee--CCCcccCHHHHHHHHH
Confidence 432 247888874433221 2566566 8899999998776554
No 23
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=98.86 E-value=1.7e-08 Score=98.30 Aligned_cols=149 Identities=23% Similarity=0.362 Sum_probs=96.6
Q ss_pred ccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCC------------
Q 038817 4 SGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSK------------ 69 (303)
Q Consensus 4 ~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~------------ 69 (303)
+++++.| ++.++||+.|+.. .+.+..|+++||+ ++.+++.||++|+|+++|..|++..+..
T Consensus 50 ~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~ 124 (441)
T PF01055_consen 50 DRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKG 124 (441)
T ss_dssp HHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT
T ss_pred HHHHHcCCCccceecccccccc----ccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcC
Confidence 3455555 6999999999974 5689999999997 9999999999999999999998643321
Q ss_pred -------------------------CCCCccchHHHHHHHHHHc-CccEEEeecCCCCCC-------------C------
Q 038817 70 -------------------------TMPGSLGHEEQDAKTFASW-GVDYLKYDNCFNTGT-------------S------ 104 (303)
Q Consensus 70 -------------------------~~pg~~~~~~~~~~~~~~w-GvdylK~D~~~~~~~-------------~------ 104 (303)
++|.+..+.....+.+.+. |||++|+|+...... .
T Consensus 125 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T PF01055_consen 125 YLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYE 204 (441)
T ss_dssp -BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHH
T ss_pred ceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchh
Confidence 1233455666667777766 999999999654320 0
Q ss_pred ccchhH-----HHHHHHHh---cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 105 PKERYP-----IMSKALLN---SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 105 ~~~~y~-----~~~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
....|. ...+++.+ ..|+++++-+.|.. ...++..| ++|+..+|+.+...+..
T Consensus 205 ~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~w--~GD~~s~w~~L~~~i~~ 265 (441)
T PF01055_consen 205 MHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGHW--SGDNSSSWDGLRSSIPA 265 (441)
T ss_dssp HGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEEE--ECSSBSSHHHHHHHHHH
T ss_pred eeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCccceee--cccccccHHHHHHHHHH
Confidence 122332 23455544 45788776443321 12455555 77999999988776654
No 24
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=98.82 E-value=6.1e-08 Score=90.68 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=98.2
Q ss_pred ccchhc--CccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCC------------
Q 038817 4 SGLAAL--GYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSK------------ 69 (303)
Q Consensus 4 ~gl~~~--Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~------------ 69 (303)
.+++++ .++.|+||..|+... ..|.+..|+++||+ .+.++++||++|+|+-+++.|++.....
T Consensus 31 ~~~~~~~iP~d~i~lD~~~~~~~--~~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v 107 (319)
T cd06591 31 KEYRKRGIPLDVIVQDWFYWPKQ--GWGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLI 107 (319)
T ss_pred HHHHHhCCCccEEEEechhhcCC--CceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEE
Confidence 455665 479999998887641 13489999999999 9999999999999999999998632110
Q ss_pred ---------------------CCCCccchHHH-HHHHHHHcCccEEEeecCCCCCCC-----------------ccchhH
Q 038817 70 ---------------------TMPGSLGHEEQ-DAKTFASWGVDYLKYDNCFNTGTS-----------------PKERYP 110 (303)
Q Consensus 70 ---------------------~~pg~~~~~~~-~~~~~~~wGvdylK~D~~~~~~~~-----------------~~~~y~ 110 (303)
++|.++.+... ..+.+.+.|||++|+|++...... ....|.
T Consensus 108 ~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~ 187 (319)
T cd06591 108 KTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYP 187 (319)
T ss_pred EcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhH
Confidence 23444455433 334577899999999998642100 011222
Q ss_pred -----HHHHHHHhc---CCCeEEEeccCCCCCcCcccccccC-eEeecCCCCCchhhHHHHHHh
Q 038817 111 -----IMSKALLNS---GRPIFFSLCEWGREDPATWAPKIGN-SWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 111 -----~~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~~~~~~~~~ 165 (303)
+..+++++. .|+++++=+.+... ..|+. .| ++|+..+|+.+...+..
T Consensus 188 ~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gs------qry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 188 LMHAKGIYEGQRAAGDEKRVVILTRSAWAGS------QRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEecccccc------ccccCcee--CCCccccHHHHHHHHHH
Confidence 233444433 47887763332111 24543 34 57999999987766543
No 25
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.80 E-value=7.6e-08 Score=88.95 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=99.4
Q ss_pred cccchhcC--ccEEEEcccccCCC-----CCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc--cC-----
Q 038817 3 TSGLAALG--YQYINLDDCWAELN-----RDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT--CS----- 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~-----~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~--c~----- 68 (303)
.+++++.| ++.|.||..|+... .+..+.++.|+++||+ .+.++++||++|+|+-+++.|.... ..
T Consensus 31 ~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~ 109 (292)
T cd06595 31 MDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE 109 (292)
T ss_pred HHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH
Confidence 45666666 69999999998632 2346789999999998 9999999999999999999997411 10
Q ss_pred ------------------CCCCCccc-hHHHHHHHHHHcCccEEEeecCCCCCC-----CccchhHH-HHHHHH-hcCCC
Q 038817 69 ------------------KTMPGSLG-HEEQDAKTFASWGVDYLKYDNCFNTGT-----SPKERYPI-MSKALL-NSGRP 122 (303)
Q Consensus 69 ------------------~~~pg~~~-~~~~~~~~~~~wGvdylK~D~~~~~~~-----~~~~~y~~-~~~al~-~~g~~ 122 (303)
-++|.... +.+...+.+.+.|||.+|.|+...... .+..-+.. ...... ..+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~~~~r~ 189 (292)
T cd06595 110 MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSARNGRRP 189 (292)
T ss_pred HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhccCCCc
Confidence 02344443 335556668899999999998653211 11100000 011111 24688
Q ss_pred eEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHH
Q 038817 123 IFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLA 163 (303)
Q Consensus 123 i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~ 163 (303)
++++=+.+.. ...|+-.| ++|+..+|+.+...+
T Consensus 190 f~lsRs~~~G------~qry~~~W--sGD~~s~W~~l~~~i 222 (292)
T cd06595 190 LIFSRWAGLG------SHRYPIGF--SGDTIISWASLAFQP 222 (292)
T ss_pred EEEEeecccC------CCcCCCcc--CCCcccCHHHHHHHH
Confidence 8886433221 12566567 889999999876544
No 26
>PRK10658 putative alpha-glucosidase; Provisional
Probab=98.78 E-value=6.1e-08 Score=98.70 Aligned_cols=150 Identities=21% Similarity=0.320 Sum_probs=104.1
Q ss_pred ccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc--------------c
Q 038817 4 SGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT--------------C 67 (303)
Q Consensus 4 ~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~--------------c 67 (303)
+++++.| ++.|.+|+.|+... ..+.+..|+++||+ .+.++++||++|+|+.+|+.|++.. |
T Consensus 290 ~~~r~~~iP~d~i~lD~~w~~~~--~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~v 366 (665)
T PRK10658 290 DGMAERDLPLHVFHFDCFWMKEF--QWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLL 366 (665)
T ss_pred HHHHHcCCCceEEEEchhhhcCC--ceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEE
Confidence 4566655 58999999999741 24688999999998 9999999999999999999998521 0
Q ss_pred C--------------------CCCCCccchHHHHHHHHHHcCccEEEeecCCC--------CCCCc---cchhH-----H
Q 038817 68 S--------------------KTMPGSLGHEEQDAKTFASWGVDYLKYDNCFN--------TGTSP---KERYP-----I 111 (303)
Q Consensus 68 ~--------------------~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~--------~~~~~---~~~y~-----~ 111 (303)
. =++|.++++.....+.+.+.|||.+|.|+... .+..+ ...|. +
T Consensus 367 k~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka 446 (665)
T PRK10658 367 KRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKT 446 (665)
T ss_pred ECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHH
Confidence 0 03566777777778888999999999998532 11111 11222 3
Q ss_pred HHHHHHh-c--CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHH
Q 038817 112 MSKALLN-S--GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD 164 (303)
Q Consensus 112 ~~~al~~-~--g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~ 164 (303)
..+++++ . .|+++++=|.+... ..|+-.| ++|+..+|+.+...+.
T Consensus 447 ~~e~l~~~~~~~r~~i~tRs~~aGs------Qry~~~W--sGD~~stw~~l~~si~ 494 (665)
T PRK10658 447 VFDVLKETRGEGEAVLFARSATVGG------QQFPVHW--GGDCYSNYESMAESLR 494 (665)
T ss_pred HHHHHHHhcCCCceEEEEecccCCC------CCCCCEE--CCCCCCCHHHHHHHHH
Confidence 3455554 2 46888765543211 2455455 7899999998876654
No 27
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.78 E-value=3.1e-07 Score=86.62 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=99.3
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcH--HHHHHHHHHcCCEEEEEecCCCccc---CC------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGI--KALADYVHAKGLKLGIYSDAGTQTC---SK------ 69 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~--~~l~~~ih~~Glk~Giy~~pg~~~c---~~------ 69 (303)
.+++++.| ++.|.||.+|+.. .+.+..|+++||+ . +.++++||++|+|+-+|+.|+...- ..
T Consensus 30 ~~~~r~~~iP~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 30 VENMRAAGIPLDVQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHhCCCcceEEECcccccC----ccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 34566666 6899999999964 5789999999999 7 9999999999999999999985421 00
Q ss_pred ------------------------------CCCCccchHHHHHHH-HHHcCccEEEeecCCCCCC-CccchhH-----HH
Q 038817 70 ------------------------------TMPGSLGHEEQDAKT-FASWGVDYLKYDNCFNTGT-SPKERYP-----IM 112 (303)
Q Consensus 70 ------------------------------~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~~~~-~~~~~y~-----~~ 112 (303)
++|.+..+.....+. +.+.|||++|.|+...... .....|. ..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~ 184 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIAT 184 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHH
Confidence 123334455555555 5568999999999764321 1112232 23
Q ss_pred HHHHHh-c-CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 113 SKALLN-S-GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 113 ~~al~~-~-g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
.+++++ . .|+++++=+.+... ..|+-.| ++|+..+|+.+...+..
T Consensus 185 ~~~~~~~~~~r~~~~sRs~~~G~------qry~~~w--~GD~~s~W~~L~~~i~~ 231 (339)
T cd06602 185 YKALQSIPGKRPFVISRSTFPGS------GRYAGHW--LGDNASTWEDLRYSIIG 231 (339)
T ss_pred HHHHHhcCCCCCEEEEecCcccc------cccceeE--CCCccCCHHHHHHHHHH
Confidence 344443 3 36777764433221 1344343 77999999987665543
No 28
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.68 E-value=8.2e-08 Score=87.30 Aligned_cols=129 Identities=19% Similarity=0.307 Sum_probs=74.1
Q ss_pred hhcCccEEEEcccccCCCCCCCCCc-ccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHH
Q 038817 7 AALGYQYINLDDCWAELNRDSTGNF-VPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTF 85 (303)
Q Consensus 7 ~~~Gy~~v~iDdgW~~~~~d~~G~~-~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~ 85 (303)
+++|++|+.||+||.....+...+. .+.+ . . -|+.|++|.++||.++=||..-.... . ...-....+..++++
T Consensus 42 a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~-~-~-dl~elv~Ya~~KgVgi~lw~~~~~~~--~-~~~~~~~~~~~f~~~ 115 (273)
T PF10566_consen 42 AEMGIEYVLVDAGWYGWEKDDDFDFTKPIP-D-F-DLPELVDYAKEKGVGIWLWYHSETGG--N-VANLEKQLDEAFKLY 115 (273)
T ss_dssp HHTT-SEEEEBTTCCGS--TTT--TT-B-T-T----HHHHHHHHHHTT-EEEEEEECCHTT--B-HHHHHCCHHHHHHHH
T ss_pred HHcCCCEEEeccccccccccccccccccCC-c-c-CHHHHHHHHHHcCCCEEEEEeCCcch--h-hHhHHHHHHHHHHHH
Confidence 5789999999999986322222222 2222 1 2 39999999999999999998643200 0 000122257888999
Q ss_pred HHcCccEEEeecCCCCCCCccchhHHHHHHHH-hcCCCeEEEeccCCCCCcCcccccccCeE
Q 038817 86 ASWGVDYLKYDNCFNTGTSPKERYPIMSKALL-NSGRPIFFSLCEWGREDPATWAPKIGNSW 146 (303)
Q Consensus 86 ~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~-~~g~~i~~~~c~~g~~~~~~~~~~~~~~~ 146 (303)
++|||..||+||+..+. ++...-..+.++ ++...+++..-. ...|.-+.+.|-|++
T Consensus 116 ~~~Gv~GvKidF~~~d~---Q~~v~~y~~i~~~AA~~~LmvnfHg--~~kPtG~~RTyPN~m 172 (273)
T PF10566_consen 116 AKWGVKGVKIDFMDRDD---QEMVNWYEDILEDAAEYKLMVNFHG--ATKPTGLRRTYPNLM 172 (273)
T ss_dssp HHCTEEEEEEE--SSTS---HHHHHHHHHHHHHHHHTT-EEEETT--S---TTHHHCSTTEE
T ss_pred HHcCCCEEeeCcCCCCC---HHHHHHHHHHHHHHHHcCcEEEecC--CcCCCcccccCccHH
Confidence 99999999999998753 333333334444 345667777643 333544556666766
No 29
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.65 E-value=8.3e-07 Score=83.76 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=99.4
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCccc-C-----------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTC-S----------- 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c-~----------- 68 (303)
.++++++| ++.|.||..|+.. .+.+..|+++||+ .+.++++||++|+|+-+|..|++..- .
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g 104 (339)
T cd06603 30 DAGFDEHDIPYDVIWLDIEHTDG----KRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKG 104 (339)
T ss_pred HHHHHHcCCCceEEEEChHHhCC----CCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCC
Confidence 35566666 6899999999863 4678999999998 99999999999999999999885321 0
Q ss_pred -------C-----------------CCCCccchHHHHHHHHH---HcCccEEEeecCCCCC-------C----------C
Q 038817 69 -------K-----------------TMPGSLGHEEQDAKTFA---SWGVDYLKYDNCFNTG-------T----------S 104 (303)
Q Consensus 69 -------~-----------------~~pg~~~~~~~~~~~~~---~wGvdylK~D~~~~~~-------~----------~ 104 (303)
+ ++|.+.++.....+.+. +-|++++++|++.... . .
T Consensus 105 ~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~ 184 (339)
T cd06603 105 YLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIE 184 (339)
T ss_pred eEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCc
Confidence 0 24555666666665543 4699999999864321 0 0
Q ss_pred c---cchhH-----HHHHHHHhc----CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 105 P---KERYP-----IMSKALLNS----GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 105 ~---~~~y~-----~~~~al~~~----g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
+ ...|. +..+++.+. .|+++++=+.+... ..|+-.| ++|+..+|+.+...+..
T Consensus 185 ~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~~ 249 (339)
T cd06603 185 HREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS------QRYAAIW--TGDNTATWEHLKISIPM 249 (339)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc------cceeeee--CCCccCCHHHHHHHHHH
Confidence 0 11222 233455432 47877764443221 2444444 77999999987766553
No 30
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.58 E-value=1.7e-06 Score=80.96 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=95.6
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCC-----CcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc-cCC-----
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTG-----NFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT-CSK----- 69 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G-----~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~-c~~----- 69 (303)
.+++++.| ++.|.|| .|+...-+..| .+..|+++||+ .+.|+++||++|+|+-+|+.|++.. +..
T Consensus 29 ~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~ 106 (317)
T cd06594 29 LEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYLADDGPLYYEEA 106 (317)
T ss_pred HHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCceecCCchhHHHH
Confidence 35566765 6889998 58652112233 47889999999 9999999999999999999998531 000
Q ss_pred -----------------------------CCCCccchHHHHHHH-HHHcCccEEEeecCCCC--------CCC---ccch
Q 038817 70 -----------------------------TMPGSLGHEEQDAKT-FASWGVDYLKYDNCFNT--------GTS---PKER 108 (303)
Q Consensus 70 -----------------------------~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~~--------~~~---~~~~ 108 (303)
++|.++++....++. +.+.|||.+|.|+.... +.+ ....
T Consensus 107 ~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~ 186 (317)
T cd06594 107 KDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNR 186 (317)
T ss_pred HHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhH
Confidence 234555666555555 48899999999986431 111 1112
Q ss_pred hHH-----HHHHHHhc---CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchh---hHHHHHH
Q 038817 109 YPI-----MSKALLNS---GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN---SMTSLAD 164 (303)
Q Consensus 109 y~~-----~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~---~~~~~~~ 164 (303)
|.. ..+++++. +|+++++=+.+... ..|+.+.+ ++|+..+|+ .+...+.
T Consensus 187 y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gs------qry~~~~W-sGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 187 YPELWAKLNREAVEEAGKTGDILFFMRSGFTGS------QKYSTLFW-AGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEccccccc------cccccccc-CCCCCCCCcCcccHHHHHH
Confidence 321 23444433 56777764432211 24555422 679999998 3554443
No 31
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.50 E-value=3.1e-06 Score=79.97 Aligned_cols=153 Identities=18% Similarity=0.285 Sum_probs=93.7
Q ss_pred cccchhcC--ccEEEEcccccCCCC------------C-----CCCCcccC-CCCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 3 TSGLAALG--YQYINLDDCWAELNR------------D-----STGNFVPK-ASAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~------------d-----~~G~~~~~-~~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.++++++| ++.|.||+ |+.... + ..++..-+ .++||+ .+.++++||++|+|+-+|+.|
T Consensus 30 ~~~~~~~~iP~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 30 MDAHEEHGIPVTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-PKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred HHHHHHcCCCeeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-HHHHHHHHHHCCCEEEEEecC
Confidence 45677777 58999995 886311 1 12233333 368998 999999999999999999999
Q ss_pred CCccc-CC-----------------------------------------CCCCccchHHHHHHHHH-HcCccEEEeecCC
Q 038817 63 GTQTC-SK-----------------------------------------TMPGSLGHEEQDAKTFA-SWGVDYLKYDNCF 99 (303)
Q Consensus 63 g~~~c-~~-----------------------------------------~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~ 99 (303)
.+... .. ++|.+..+.....+.+. +.|||.+|.|+..
T Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 108 IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCC
Confidence 75321 00 12333455555666654 7999999999864
Q ss_pred CC---------CCCc---cchhH-----HHHHHHHhcC-CCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHH
Q 038817 100 NT---------GTSP---KERYP-----IMSKALLNSG-RPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTS 161 (303)
Q Consensus 100 ~~---------~~~~---~~~y~-----~~~~al~~~g-~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~ 161 (303)
.. +..+ ...|. ++.+++++.+ |+++++=+.+... ..|+=.| ++|+..+|+.+..
T Consensus 188 ~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs------qry~~~W--sGD~~s~W~~L~~ 259 (340)
T cd06597 188 HVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA------QAHGIFW--AGDENSTFGAFRW 259 (340)
T ss_pred ccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc------CCCccee--cCCCCCCHHHHHH
Confidence 31 1111 11121 2344444444 7777764443221 1344344 7799999998776
Q ss_pred HHHh
Q 038817 162 LADQ 165 (303)
Q Consensus 162 ~~~~ 165 (303)
.+..
T Consensus 260 ~i~~ 263 (340)
T cd06597 260 SVFA 263 (340)
T ss_pred HHHH
Confidence 5543
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.8e-06 Score=89.11 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=104.8
Q ss_pred hhcCccEEEEccc-ccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc--------------c----
Q 038817 7 AALGYQYINLDDC-WAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT--------------C---- 67 (303)
Q Consensus 7 ~~~Gy~~v~iDdg-W~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~--------------c---- 67 (303)
++.-++.|++|.. |.. ..+.+..|+.+||+ .+.|++++|++|+|+-+|..|.... |
T Consensus 292 ~~IP~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~ 366 (772)
T COG1501 292 RDIPLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPD 366 (772)
T ss_pred ccCcceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCC
Confidence 3456899999986 775 36789999999999 9999999999999999999997521 0
Q ss_pred --------CC--------CCCCccchHHH-HHHHHHHcCccEEEeecCCCCCC---------C---ccchh-----HHHH
Q 038817 68 --------SK--------TMPGSLGHEEQ-DAKTFASWGVDYLKYDNCFNTGT---------S---PKERY-----PIMS 113 (303)
Q Consensus 68 --------~~--------~~pg~~~~~~~-~~~~~~~wGvdylK~D~~~~~~~---------~---~~~~y-----~~~~ 113 (303)
-+ ++|.++.+... ..+.+.+.|||.+|.|++-..-. . ....| .+..
T Consensus 367 g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~ 446 (772)
T COG1501 367 GEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVY 446 (772)
T ss_pred CCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHH
Confidence 00 35677788874 45669999999999999854211 1 11122 2345
Q ss_pred HHHHhc---CCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHh
Q 038817 114 KALLNS---GRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQ 165 (303)
Q Consensus 114 ~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 165 (303)
+++++. .|+++|+=|.+... ..++-.| ++|+...|+++...+..
T Consensus 447 ~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W--sGD~~s~wd~l~~si~~ 493 (772)
T COG1501 447 EALKELGGNERPFILSRSGYAGS------QRYAAHW--SGDNRSSWDSLRESIPA 493 (772)
T ss_pred HHHHhhcCCCceEEEEecccccc------eecccee--CCccccchHHHHhhHHh
Confidence 666655 58888875543221 2456677 88999999998776554
No 33
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.34 E-value=4.9e-06 Score=87.19 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=99.7
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccC------------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCS------------ 68 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~------------ 68 (303)
.+.+++.+ ++.|.+|..|+.. .+.+..|+++||+ .+.|+++||++|+|.-.+++|++....
T Consensus 207 a~~fre~~IP~DvIwlDidYm~g----~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~ 281 (978)
T PLN02763 207 ARTFREKKIPCDVVWMDIDYMDG----FRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCEND 281 (978)
T ss_pred HHHHHHcCCCceEEEEehhhhcC----CCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcC
Confidence 34566665 6999999999753 4568899999998 999999999999999777788753110
Q ss_pred -------C-----------------CCCCccchHHHHHHHHHHcCccEEEeecCCCCCC-------------Cc------
Q 038817 69 -------K-----------------TMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT-------------SP------ 105 (303)
Q Consensus 69 -------~-----------------~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~-------------~~------ 105 (303)
+ ++|.++.|.....+.|.+.|||+++.|++..... ..
T Consensus 282 ~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG 361 (978)
T PLN02763 282 VWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGG 361 (978)
T ss_pred eeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCC
Confidence 0 2344556777777888899999999999753210 00
Q ss_pred -------cchhH-----HHHHHHHh---cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHH
Q 038817 106 -------KERYP-----IMSKALLN---SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD 164 (303)
Q Consensus 106 -------~~~y~-----~~~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~ 164 (303)
...|. +..+++++ ..||++++=+.+... ..|+-.| ++|+..+|+.+...+.
T Consensus 362 ~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGs------QRYaa~W--tGDn~SsWe~L~~sI~ 427 (978)
T PLN02763 362 VQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGS------QRYAATW--TGDNLSNWEHLHMSIP 427 (978)
T ss_pred ccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcC------CCCceEE--CCCccCCHHHHHHHHH
Confidence 11111 12234432 258898874443221 2455555 7899999998765543
No 34
>PRK10426 alpha-glucosidase; Provisional
Probab=98.30 E-value=7.2e-06 Score=83.39 Aligned_cols=145 Identities=19% Similarity=0.290 Sum_probs=94.8
Q ss_pred cccchhcC--ccEEEEcccccCCCCCCC-----CCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc---------
Q 038817 3 TSGLAALG--YQYINLDDCWAELNRDST-----GNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT--------- 66 (303)
Q Consensus 3 ~~gl~~~G--y~~v~iDdgW~~~~~d~~-----G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~--------- 66 (303)
.+++++.| ++.|.||| |+.....+. ++|..|+++||+ .+.++++||++|+|+-+|..|+...
T Consensus 227 ~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~ 304 (635)
T PRK10426 227 LDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAA 304 (635)
T ss_pred HHHHHHcCCCeeEEEEec-ccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHH
Confidence 35667777 58888984 986422222 357889999998 9999999999999999999998521
Q ss_pred -----c------------CC--------CCCCccchHHHHH-HHHHHcCccEEEeecCCCC--------CCC---ccchh
Q 038817 67 -----C------------SK--------TMPGSLGHEEQDA-KTFASWGVDYLKYDNCFNT--------GTS---PKERY 109 (303)
Q Consensus 67 -----c------------~~--------~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~--------~~~---~~~~y 109 (303)
| .+ ++|.++++....+ +.+.+.|||.+|.|+...- +.. ....|
T Consensus 305 ~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y 384 (635)
T PRK10426 305 EKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAW 384 (635)
T ss_pred HCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHH
Confidence 0 00 3455667776655 4588999999999986421 111 11223
Q ss_pred H-----HHHHHHHhc---CCCeEEEeccCCCCCcCcccccccC-eEeecCCCCCchh
Q 038817 110 P-----IMSKALLNS---GRPIFFSLCEWGREDPATWAPKIGN-SWRTTGDIKDNWN 157 (303)
Q Consensus 110 ~-----~~~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~ 157 (303)
. ...+++++. +|+++++=+.+... ..|+. .| ++|+..+|+
T Consensus 385 ~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGs------Qry~~~~W--sGD~~ssW~ 433 (635)
T PRK10426 385 PALWAKCNYEALEETGKLGEILFFMRAGYTGS------QKYSTLFW--AGDQNVDWS 433 (635)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEccccCCc------CCcccccc--CCCCCCcCc
Confidence 2 233555543 47887764332111 24554 35 779999995
No 35
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.31 E-value=0.067 Score=48.39 Aligned_cols=142 Identities=23% Similarity=0.407 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCC-CC-ccchhHHHHHHHHh-
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTG-TS-PKERYPIMSKALLN- 118 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~-~~-~~~~y~~~~~al~~- 118 (303)
|+.++++++++|++.|+|+.-+ ++...+.+..-|+.++|+|--..+. .. .-...++..+++.+
T Consensus 77 l~~~~~~~~~~g~~~glwt~~~--------------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~ 142 (261)
T cd06596 77 LKEVVDYLHANGVETGLWTQSG--------------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESN 142 (261)
T ss_pred HHHHHHHHHHcCCccccccccc--------------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhC
Confidence 8999999999999999996633 2444555777899999999764321 11 11111233344433
Q ss_pred -cCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHHHhhcccccccCCCCc-CCCcceecCCCCCChHHH
Q 038817 119 -SGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGY-NDPDMLEVGNGGMTTEEY 196 (303)
Q Consensus 119 -~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~~~~~~-nDpD~l~vg~~~lt~~E~ 196 (303)
..||++++-|.|... ..|+-.| ++|+..+|+.+...+...... ..++...| .|.+=. . ++ ..|-
T Consensus 143 ~~~RpfiltRsg~aGs------QRy~~~W--sGD~~stWe~Lr~sI~~~L~~-gLsG~p~~G~DIGGF-~--g~--~~EL 208 (261)
T cd06596 143 SNARPFIVTVDGWAGT------QRYAGIW--TGDQSGSWEYIRFHIPTYIGS-GLSGQPNTTSDVDGI-F--GG--SPET 208 (261)
T ss_pred CCCCCEEEEecCcccc------CCCCCcc--CCCCcCcHHHHHHHHHHHHHH-HhcCCCcCccccCcC-C--CC--CHHH
Confidence 358999987765432 2445455 789999999987665432221 11222222 232111 1 12 3566
Q ss_pred HHHHHHHHHhcCCeee
Q 038817 197 RAHFSIWALAKAPLLI 212 (303)
Q Consensus 197 r~~~~~wa~~~spL~~ 212 (303)
-++-.-|+++ .|++.
T Consensus 209 ~vRW~Q~gaF-~P~~R 223 (261)
T cd06596 209 YTRDLQWKAF-TPVLM 223 (261)
T ss_pred HHHHHHHHHh-hhhhh
Confidence 6666666777 57764
No 36
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.0092 Score=61.36 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=49.6
Q ss_pred ccchhcC--ccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCc
Q 038817 4 SGLAALG--YQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQ 65 (303)
Q Consensus 4 ~gl~~~G--y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~ 65 (303)
+..+++| ++.+.+|.-|+.. .++.+.|+.+||. |+.+++.||+.|+|.=+..+|+..
T Consensus 318 ~~~~~agiPld~~~~DiDyMd~----ykDFTvd~~~fp~-~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 318 ENYRAAGIPLDVIVIDIDYMDG----YKDFTVDKVWFPD-LKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred HHHHHcCCCcceeeeehhhhhc----ccceeeccccCcc-hHHHHHHHHhCCCeEEEEeCCccc
Confidence 3445555 6799999999975 6889999999998 999999999999999999999864
No 37
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.38 E-value=0.15 Score=52.01 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred cchhcCccEEEEcccccCCC-----CCCCCCcccCCCCCC--CcHHHHHHHHHHcCCEEEEEecCCCc------------
Q 038817 5 GLAALGYQYINLDDCWAELN-----RDSTGNFVPKASAFP--AGIKALADYVHAKGLKLGIYSDAGTQ------------ 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~-----~d~~G~~~~~~~~FP--~G~~~l~~~ih~~Glk~Giy~~pg~~------------ 65 (303)
.|+++|++.|.|=-=.+... -+..+...+++ +|. ..||.|++.+|++||++=+-+-+...
T Consensus 165 yl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~-~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~ 243 (613)
T TIGR01515 165 YVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTS-RFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDG 243 (613)
T ss_pred HHHHcCCCEEEECCcccCCCCCCCCCCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCC
Confidence 57999999999822111110 11223445554 563 46999999999999998876543210
Q ss_pred ------ccC--------------CCCCCccchHHHHHHHH-HHcCccEEEeecC
Q 038817 66 ------TCS--------------KTMPGSLGHEEQDAKTF-ASWGVDYLKYDNC 98 (303)
Q Consensus 66 ------~c~--------------~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 98 (303)
.+. -.+|.++.|+...++.+ .++|||.+++|.+
T Consensus 244 ~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 244 TPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred CcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 000 01244556666667765 5799999999985
No 38
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.05 E-value=0.77 Score=43.48 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred cchhcCccEEEE----cccccCCCCCCCCCcccCCCCCC-CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCC-------
Q 038817 5 GLAALGYQYINL----DDCWAELNRDSTGNFVPKASAFP-AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMP------- 72 (303)
Q Consensus 5 gl~~~Gy~~v~i----DdgW~~~~~d~~G~~~~~~~~FP-~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~p------- 72 (303)
-+|++|.+||++ =||..--.. +..++..-...+- +=++.|++.+++.|||+|+|+.+.... .+.++
T Consensus 99 ~ak~aGakY~VlTakHHDGF~LW~S-~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~-~~~~~~~~~~~~ 176 (346)
T PF01120_consen 99 LAKDAGAKYVVLTAKHHDGFCLWPS-KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWH-HPDYPPDEEGDE 176 (346)
T ss_dssp HHHHTT-SEEEEEEE-TT--BSS---TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCC-CTTTTSSCHCHH
T ss_pred HHHHcCCCEEEeehhhcCccccCCC-CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhc-CcccCCCccCCc
Confidence 468899999999 224332100 1112221110110 127999999999999999999987321 11111
Q ss_pred -C-------ccchHH-----HHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEe
Q 038817 73 -G-------SLGHEE-----QDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSL 127 (303)
Q Consensus 73 -g-------~~~~~~-----~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 127 (303)
+ ...|++ ++-+++..+.+|.|=.|..... ......+..+.+.+++..+.+++.-
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~-~~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 177 NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD-PDEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-CCTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-cccccCHHHHHHHHHHhCCeEEEec
Confidence 1 012332 3334455667777777776543 1222334667777888888877763
No 39
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.20 E-value=1 Score=43.37 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=122.7
Q ss_pred ccchhcCccEEEE----cccccCCCCCCCCCcccCCCCC-CCcHHHHHHHHHHcCCEEEEEecCCCcc---cC-------
Q 038817 4 SGLAALGYQYINL----DDCWAELNRDSTGNFVPKASAF-PAGIKALADYVHAKGLKLGIYSDAGTQT---CS------- 68 (303)
Q Consensus 4 ~gl~~~Gy~~v~i----DdgW~~~~~d~~G~~~~~~~~F-P~G~~~l~~~ih~~Glk~Giy~~pg~~~---c~------- 68 (303)
+-+|++|.+||++ =||+.--.. +..++..-...+ -+=++.|++.+|+.|||||+|+++.... +.
T Consensus 88 ~~~k~AGakY~vlTaKHHDGF~lw~S-~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~ 166 (384)
T smart00812 88 DLFKKAGAKYVVLTAKHHDGFCLWDS-KYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDE 166 (384)
T ss_pred HHHHHcCCCeEEeeeeecCCccccCC-CCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCcccccccccc
Confidence 3478999999999 234332100 011222111000 0228999999999999999999873211 10
Q ss_pred --CCCCCccchH----HHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCe---EEEeccCCC--CCcCc
Q 038817 69 --KTMPGSLGHE----EQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPI---FFSLCEWGR--EDPAT 137 (303)
Q Consensus 69 --~~~pg~~~~~----~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i---~~~~c~~g~--~~~~~ 137 (303)
...|....|+ .+..+++..+|-|.|=.|+..... ........+.+.+.+..+.+ +++ ..|+. ..+..
T Consensus 167 ~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~-~~~~~~~~l~~~~~~~qP~~~~vvvn-~R~~~~~~~~g~ 244 (384)
T smart00812 167 DPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAP-DDYWRSKEFLAWLYNLSPVKDTVVVN-DRWGGTGCKHGG 244 (384)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCc-cchhcHHHHHHHHHHhCCCCceEEEE-ccccccCCCCCC
Confidence 0112233444 445556678899999999864321 11123455666666666665 665 44541 11111
Q ss_pred ccccccCeEe-ecCC-CCCchhhHHHHHHhhcccccccCCCCcCCC--cceecCCCCCChHHHHHHHHHHHHhcCCeeec
Q 038817 138 WAPKIGNSWR-TTGD-IKDNWNSMTSLADQNDKWASYAGPGGYNDP--DMLEVGNGGMTTEEYRAHFSIWALAKAPLLIG 213 (303)
Q Consensus 138 ~~~~~~~~~R-is~D-~~~~w~~~~~~~~~~~~~~~~~~~~~~nDp--D~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g 213 (303)
. +..--| +..+ ....|++...+ + ....|+.- |- .-.|..|-.-.+.--.--++.|+|.
T Consensus 245 ~---~~~~e~~~p~~~~~~pwE~~~ti-~---------~sWgy~~~~~~~-----~~ks~~~li~~l~~~Vsk~GnlLLN 306 (384)
T smart00812 245 F---YTDEERGAPGKLLPHPWETCTTI-G---------KSWGYRRNESDS-----DYKSPKELIRDLVDIVSKGGNLLLN 306 (384)
T ss_pred c---ccCcccCCCCCCCCCCccccccc-C---------CCCCcCCCCCcc-----cCCCHHHHHHHHhhhcCCCceEEEc
Confidence 0 000000 0111 12245543322 1 11223211 11 1255555544444333447788876
Q ss_pred cCCC---CCCHHHHHhhhc-hHHHHhhcccC-CCccEEeeecC-CeeEEEEEc-CC-CCEEEEEEeCCCC
Q 038817 214 CDIR---AMDKITFNILSN-KEVIAVNQDKL-GVQGKKVKKEG-DLEVWAGPL-SG-NRVAVVLWNRGSS 275 (303)
Q Consensus 214 ~dl~---~l~~~~~~~l~N-~~~iai~qd~l-g~~~~~v~~~~-~~~vw~~~l-~~-g~~~va~fN~~~~ 275 (303)
--+. ++++...+.|.. .+-+.+|-+.+ |..+-++...+ ...+|.... ++ +..|+-++++...
T Consensus 307 VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~~~~~~~~~~~~~~t~~~~~~~~lY~~~~~~p~~ 376 (384)
T smart00812 307 VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPWRIQGEGPTGEVWYTSTKKADNTLYAIVLDWPED 376 (384)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCCcccCCCCCCCCceeEecCCCcEEEEEEecCCCC
Confidence 5553 477777776652 24566665532 21111111111 235664333 33 3688889988643
No 40
>PRK10785 maltodextrin glucosidase; Provisional
Probab=90.48 E-value=22 Score=36.26 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=33.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcc-----cCCCCCCC--cHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFV-----PKASAFPA--GIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~-----~~~~~FP~--G~~~l~~~ih~~Glk~Gi 58 (303)
-|+++|++.|-|=-=.... ...|.+. +|| .|-. .++.|++.+|++|||+=|
T Consensus 187 YL~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 187 YLKKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred HHHHcCCCEEEeCCcccCC--CCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4788999999884333322 1233333 343 4422 489999999999999654
No 41
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.47 E-value=1.2 Score=45.85 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=56.7
Q ss_pred cchhcCccEEEEcccccCCCC-----CCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCC-------------
Q 038817 5 GLAALGYQYINLDDCWAELNR-----DSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGT------------- 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~-----d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~------------- 64 (303)
-|+++||+.|.|=---+.... +..+...+++ +| |..+|.|++.+|++|++.=+=+-+..
T Consensus 176 ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg 254 (639)
T PRK14706 176 YVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDG 254 (639)
T ss_pred HHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCC
Confidence 478999999987211111001 1123344443 55 45799999999999999764222110
Q ss_pred -cc---cC---C------------CCCCccchHHHHHHHH-HHcCccEEEeecCCC
Q 038817 65 -QT---CS---K------------TMPGSLGHEEQDAKTF-ASWGVDYLKYDNCFN 100 (303)
Q Consensus 65 -~~---c~---~------------~~pg~~~~~~~~~~~~-~~wGvdylK~D~~~~ 100 (303)
.. +. + .+|.++.|+-..++.+ .+.|||.+.+|.+.+
T Consensus 255 ~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~ 310 (639)
T PRK14706 255 GPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVAS 310 (639)
T ss_pred CcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehh
Confidence 00 00 0 1344556666666765 589999999997543
No 42
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=89.04 E-value=1 Score=45.88 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=57.0
Q ss_pred chhcCccEEEE--------cccccCCCCCCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCC-----cccCC-
Q 038817 6 LAALGYQYINL--------DDCWAELNRDSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGT-----QTCSK- 69 (303)
Q Consensus 6 l~~~Gy~~v~i--------DdgW~~~~~d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~-----~~c~~- 69 (303)
|+++||+.|-| |-+|--. ..|..-|. ++| |++||+|+|.+|++|+.+=|=+-|+. ..|..
T Consensus 174 l~elG~T~IELMPv~e~p~~~sWGYq---~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~f 249 (628)
T COG0296 174 LKELGITHIELMPVAEHPGDRSWGYQ---GTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARF 249 (628)
T ss_pred HHHhCCCEEEEcccccCCCCCCCCCC---cceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhc
Confidence 68899999987 4444321 12344444 477 78999999999999987655443432 11110
Q ss_pred --------------C------------CCCccchHHHHHHH-HHHcCccEEEeecCCC
Q 038817 70 --------------T------------MPGSLGHEEQDAKT-FASWGVDYLKYDNCFN 100 (303)
Q Consensus 70 --------------~------------~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 100 (303)
. .+.++.|+-..+.. +.++.||.|.+|.+.+
T Consensus 250 dg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 250 DGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred CCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 0 12233444344444 6799999999999754
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.33 E-value=2.8 Score=43.67 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=54.6
Q ss_pred cchhcCccEEEEcccccCCCC-----CCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCCcccCC--------
Q 038817 5 GLAALGYQYINLDDCWAELNR-----DSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGTQTCSK-------- 69 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~-----d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~-------- 69 (303)
-|+++||+.|.|=--...... +..|...+++ +| |..+|.|++.+|++|+++=+=+-+. .|+.
T Consensus 278 ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~n--H~~~d~~~l~~f 354 (730)
T PRK12568 278 YVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSA--HFPDDAHGLAQF 354 (730)
T ss_pred HHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccc--cCCccccccccC
Confidence 478999999977221111101 1123445554 55 3479999999999999976533322 1100
Q ss_pred --------------------------CCCCccchHHHHHHH-HHHcCccEEEeecC
Q 038817 70 --------------------------TMPGSLGHEEQDAKT-FASWGVDYLKYDNC 98 (303)
Q Consensus 70 --------------------------~~pg~~~~~~~~~~~-~~~wGvdylK~D~~ 98 (303)
.+|.++.|+-..+.. +.+.|||.+.+|.+
T Consensus 355 dg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 355 DGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred CCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 123334455555555 45899999999975
No 44
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=87.12 E-value=5.2 Score=40.89 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCEEEEEecC----------CCc-------------------ccCC----CCCCccchHHHHHHHHH-
Q 038817 41 GIKALADYVHAKGLKLGIYSDA----------GTQ-------------------TCSK----TMPGSLGHEEQDAKTFA- 86 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~p----------g~~-------------------~c~~----~~pg~~~~~~~~~~~~~- 86 (303)
.||.|++.+|++||++=+=.-. +.. .|.. .+|.++.|+...++.+.
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999997542211 000 0110 13344556666666654
Q ss_pred HcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEE
Q 038817 87 SWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFF 125 (303)
Q Consensus 87 ~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~ 125 (303)
+.|||.+.+|....- ..+....+++++++..+.+++
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEE
Confidence 699999999977432 234456777788777766544
No 45
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=86.88 E-value=5.8 Score=35.19 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=69.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccC-CCCCCCc-HHHHHHHHHHcCCEEEEEecCCCc-----------------
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPK-ASAFPAG-IKALADYVHAKGLKLGIYSDAGTQ----------------- 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~-~~~FP~G-~~~l~~~ih~~Glk~Giy~~pg~~----------------- 65 (303)
.|...||+.|.+=| +.. ...+..+ +--||+- +.+++..+... .+.|+-.---.+
T Consensus 82 ~le~~G~d~illlC---TG~---F~~l~~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ~~~~~~kW~~l~~~~~~ 154 (221)
T PF07302_consen 82 QLEAQGYDVILLLC---TGE---FPGLTARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQIAQQAEKWQPLGNPVVV 154 (221)
T ss_pred HHHHCCCCEEEEec---cCC---CCCCCCCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHHHHHHHHHHHhcCCCeEE
Confidence 35678999998832 211 1122221 1344543 47777777775 799987632110
Q ss_pred -ccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH-hcCCCeEEE
Q 038817 66 -TCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL-NSGRPIFFS 126 (303)
Q Consensus 66 -~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~-~~g~~i~~~ 126 (303)
.+.+ |-|+.+-+..-++.++++|.|+|=+|+++.. .+|++.++ .+|.|++++
T Consensus 155 a~asP-y~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 155 AAASP-YEGDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLS 208 (221)
T ss_pred EEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeH
Confidence 1112 3456666677788899999999999999753 67888886 589999886
No 46
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.64 E-value=3.3 Score=42.48 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=55.6
Q ss_pred cchhcCccEEEEcccccCCCC-----CCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCCc------------
Q 038817 5 GLAALGYQYINLDDCWAELNR-----DSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGTQ------------ 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~-----d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~~------------ 65 (303)
.|+++|++.|.|=--++.... +..+...+++ +| |+.+|.|++.+|++||++=+=.-+-..
T Consensus 179 yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~ 257 (633)
T PRK12313 179 YVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDG 257 (633)
T ss_pred HHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCC
Confidence 578999999987322222111 1123344444 45 447999999999999997643221100
Q ss_pred --cc------------------CCCCCCccchHHHHHHHH-HHcCccEEEeecC
Q 038817 66 --TC------------------SKTMPGSLGHEEQDAKTF-ASWGVDYLKYDNC 98 (303)
Q Consensus 66 --~c------------------~~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 98 (303)
.+ .-.+|.++.|+...++.+ .+.|||.+.+|.+
T Consensus 258 ~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 258 TPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 00 001244455666666665 4689999999965
No 47
>PLN02960 alpha-amylase
Probab=85.79 E-value=5 Score=42.52 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=55.0
Q ss_pred cchhcCccEEEEcccccCCCCCCC-----CCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCC-------------
Q 038817 5 GLAALGYQYINLDDCWAELNRDST-----GNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGT------------- 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~-----G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~------------- 64 (303)
.|+++||+.|.|=---+.....+. +...+++ +| |..++.|++.+|++|+++=|=+-+..
T Consensus 425 YLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FD 503 (897)
T PLN02960 425 HVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS-RFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD 503 (897)
T ss_pred HHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcC
Confidence 578999999988221111111112 2233332 33 56799999999999999764322110
Q ss_pred --cccC------C------------CCCCccchHHHHHHHH-HHcCccEEEeecCCC
Q 038817 65 --QTCS------K------------TMPGSLGHEEQDAKTF-ASWGVDYLKYDNCFN 100 (303)
Q Consensus 65 --~~c~------~------------~~pg~~~~~~~~~~~~-~~wGvdylK~D~~~~ 100 (303)
..|- + ..|.++.|+-..++.+ .+.+||.+.+|.+.+
T Consensus 504 G~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~s 560 (897)
T PLN02960 504 GSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGS 560 (897)
T ss_pred CCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccce
Confidence 0000 0 0133445555556664 689999999998754
No 48
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.71 E-value=3.8 Score=45.11 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=54.9
Q ss_pred cchhcCccEEEEcccccCCCC-----CCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCCc------------
Q 038817 5 GLAALGYQYINLDDCWAELNR-----DSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGTQ------------ 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~-----d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~~------------ 65 (303)
.||++||+.|.|=--.+.... +..+...|++ +| |+.+|.|++.+|++|++.=|=+-+...
T Consensus 774 Ylk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~-ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg 852 (1224)
T PRK14705 774 YVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS-RFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDG 852 (1224)
T ss_pred HHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCC
Confidence 578999999977211111101 1123344443 55 567999999999999998754333210
Q ss_pred c-------cC-C------------CCCCccchHHHHHHH-HHHcCccEEEeecCC
Q 038817 66 T-------CS-K------------TMPGSLGHEEQDAKT-FASWGVDYLKYDNCF 99 (303)
Q Consensus 66 ~-------c~-~------------~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~ 99 (303)
+ +. + .+|.++.|+...+.. +.+++||.+.+|.+.
T Consensus 853 ~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~ 907 (1224)
T PRK14705 853 QPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVA 907 (1224)
T ss_pred CcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehh
Confidence 0 00 0 012233455445555 468999999999863
No 49
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=84.14 E-value=1.4 Score=41.13 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=36.3
Q ss_pred cchhcCccEEEEcc----c---ccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCC
Q 038817 5 GLAALGYQYINLDD----C---WAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDd----g---W~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
-+++.|..||++-. | |-..........-..|.| +=.+.|++.+++.+++||||++++.
T Consensus 110 lfq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~dvgpkr--DiV~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 110 LFQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMDVGPKR--DIVGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHhcCceEEEEeecccCceecCCCcCcccccccccCccc--cHHHHHHHHHHhcCcceeEeecHHH
Confidence 46788999999932 3 222111101111112211 2279999999999999999999874
No 50
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.65 E-value=8 Score=39.00 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=65.1
Q ss_pred cchhcCccEEEEcccccCCCCCCCC-----CcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCC-------------
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTG-----NFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGT------------- 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G-----~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~------------- 64 (303)
.|+++|++.|.|=--.........| ...+++ +| +..||.|++.+|++|+++=|=.-+..
T Consensus 119 yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 197 (542)
T TIGR02402 119 YLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAP 197 (542)
T ss_pred HHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCc
Confidence 5789999999872111110000112 223332 33 23699999999999999754221110
Q ss_pred -------cccCC----CCC---CccchHHHHHHHH-HHcCccEEEeecCCCCC-CCccchhHHHHHHHHhcCCC
Q 038817 65 -------QTCSK----TMP---GSLGHEEQDAKTF-ASWGVDYLKYDNCFNTG-TSPKERYPIMSKALLNSGRP 122 (303)
Q Consensus 65 -------~~c~~----~~p---g~~~~~~~~~~~~-~~wGvdylK~D~~~~~~-~~~~~~y~~~~~al~~~g~~ 122 (303)
..|+. .+| .++.++...++.+ .+.|||.+.+|....-. .....-...+++++++..++
T Consensus 198 y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 198 YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAE 271 (542)
T ss_pred cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCC
Confidence 01111 134 4455665556665 57999999999754311 11223456677777766554
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=82.86 E-value=9.3 Score=35.64 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=58.3
Q ss_pred cchhcCccEEEEcccccCCC-CCC---------CCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc--------
Q 038817 5 GLAALGYQYINLDDCWAELN-RDS---------TGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT-------- 66 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~-~d~---------~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~-------- 66 (303)
.|+++|++.|.++=-+.... -.+ .|....+| -| +=|+.+++..|++||++=-|+..+...
T Consensus 27 ~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~p-g~-DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~ 104 (311)
T PF02638_consen 27 DLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDP-GF-DPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILK 104 (311)
T ss_pred HHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCC-Cc-cHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhh
Confidence 47889999988865443211 000 11111122 12 238999999999999998887432110
Q ss_pred ------c-C-------------------CCCCCccchHHHHHHH-HHHcCccEEEeecCCC
Q 038817 67 ------C-S-------------------KTMPGSLGHEEQDAKT-FASWGVDYLKYDNCFN 100 (303)
Q Consensus 67 ------c-~-------------------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 100 (303)
+ . +.+|.+++|+...++. +..+.||.|-+|.+..
T Consensus 105 ~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~y 165 (311)
T PF02638_consen 105 KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFY 165 (311)
T ss_pred cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccc
Confidence 0 0 1246677888777766 5689999999996543
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.58 E-value=7.7 Score=40.56 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=54.4
Q ss_pred cchhcCccEEEEcccccCCCC-----CCCCCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCCcccC---------
Q 038817 5 GLAALGYQYINLDDCWAELNR-----DSTGNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGTQTCS--------- 68 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~-----d~~G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~~~c~--------- 68 (303)
.|+++||+.|.|=--.+.... +..+...+++ +| |..||.|++.+|++||++=|=.-+.. +|.
T Consensus 274 ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH-~~~~~~~~~~~~ 351 (726)
T PRK05402 274 YVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVPAH-FPKDAHGLARFD 351 (726)
T ss_pred HHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCccchhccC
Confidence 479999999988322221111 1122333443 44 34699999999999999765322210 000
Q ss_pred ------------------------CCCCCccchHHHHHHHH-HHcCccEEEeecC
Q 038817 69 ------------------------KTMPGSLGHEEQDAKTF-ASWGVDYLKYDNC 98 (303)
Q Consensus 69 ------------------------~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 98 (303)
-.+|.++.|+...++.+ .+.|||.+.+|.+
T Consensus 352 ~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 352 GTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 01233445555566665 5799999999975
No 53
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=78.95 E-value=16 Score=33.95 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCccc-CCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCC----CccchhHHHHH
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTC-SKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT----SPKERYPIMSK 114 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c-~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~----~~~~~y~~~~~ 114 (303)
..++.-++.+|++|+|+-|=+-.....- ..+......+.+...+.+.++|+|.|=+|.-+.... ...+.+..+.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk 139 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALK 139 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHH
Confidence 3578888899999999776543211000 000011233456677778999999999999765322 12345555656
Q ss_pred HHH-hcCCCeEEEe
Q 038817 115 ALL-NSGRPIFFSL 127 (303)
Q Consensus 115 al~-~~g~~i~~~~ 127 (303)
.|+ +.++.++++.
T Consensus 140 ~lr~~~~~~~~lT~ 153 (312)
T cd02871 140 QLKDHYGPNFILTM 153 (312)
T ss_pred HHHHHcCCCeEEEE
Confidence 665 3456677765
No 54
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=77.39 E-value=3.9 Score=39.24 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=35.9
Q ss_pred ccchhcCccEEEE----cccccCCCCCCCCCcccCCCCCCCc--HHHHHHHHHHcCCEEEEEecCC
Q 038817 4 SGLAALGYQYINL----DDCWAELNRDSTGNFVPKASAFPAG--IKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 4 ~gl~~~Gy~~v~i----DdgW~~~~~d~~G~~~~~~~~FP~G--~~~l~~~ih~~Glk~Giy~~pg 63 (303)
+-+|++|.+||++ =||..--.. .+-+|.. +.+=|-+ ++.+++.+++.||.||||+...
T Consensus 61 r~fK~aGAKyvilvakHHDGFaLw~t-~ys~wns-vk~GpKrDlvgela~Avr~qGL~FGvy~s~a 124 (430)
T COG3669 61 RLFKEAGAKYVILVAKHHDGFALWPT-DYSVWNS-VKRGPKRDLVGELAKAVREQGLRFGVYLSGA 124 (430)
T ss_pred HHHHHcCCcEEEEeeeecCCeeeccc-ccccccc-cccCCcccHHHHHHHHHHHcCCeeeEeeccC
Confidence 3478999999998 233221100 0112211 1122222 7999999999999999999843
No 55
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=76.52 E-value=20 Score=36.11 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCCEEEEEEeCCCCceEEEEEccc
Q 038817 253 LEVWAGPLSGNRVAVVLWNRGSSKATVTANWSD 285 (303)
Q Consensus 253 ~~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~~ 285 (303)
.-++.+... ++.+++++|.++++++++|+++.
T Consensus 470 v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~ 501 (539)
T TIGR02456 470 VLAFLREYE-GERVLCVFNFSRNPQAVELDLSE 501 (539)
T ss_pred EEEEEEEcC-CcEEEEEEeCCCCCEEeeccccc
Confidence 556667654 56899999999999999987764
No 56
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=76.28 E-value=6.2 Score=41.03 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=62.7
Q ss_pred cchhcCccEEEEcccccCCC--------------CCCCCCcccCCCCCC-----CcHHHHHHHHHHcCCEEEEEecCC--
Q 038817 5 GLAALGYQYINLDDCWAELN--------------RDSTGNFVPKASAFP-----AGIKALADYVHAKGLKLGIYSDAG-- 63 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~--------------~d~~G~~~~~~~~FP-----~G~~~l~~~ih~~Glk~Giy~~pg-- 63 (303)
.|+++|++.|.|=--..... -+......|++ +|- ..+|.|++.+|++|+++=+=.-.-
T Consensus 192 yLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~-~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt 270 (688)
T TIGR02100 192 YLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEP-RYLASGQVAEFKTMVRALHDAGIEVILDVVYNHT 270 (688)
T ss_pred HHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccCh-hhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCc
Confidence 68999999997722111100 01112233454 451 249999999999999965322110
Q ss_pred -----------------------------C----cccCC----CCCCccchHHHHHHHHH-HcCccEEEeecCCCCCCC-
Q 038817 64 -----------------------------T----QTCSK----TMPGSLGHEEQDAKTFA-SWGVDYLKYDNCFNTGTS- 104 (303)
Q Consensus 64 -----------------------------~----~~c~~----~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~~- 104 (303)
. ..|.. .+|.++.|+...++.+. +.|||.+.+|....-...
T Consensus 271 ~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~ 350 (688)
T TIGR02100 271 AEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGREL 350 (688)
T ss_pred cCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhcccc
Confidence 0 01211 13445566666666665 799999999986542111
Q ss_pred -ccchhHHHHHHHHh
Q 038817 105 -PKERYPIMSKALLN 118 (303)
Q Consensus 105 -~~~~y~~~~~al~~ 118 (303)
.......+.++|++
T Consensus 351 ~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 351 YGFDMLSGFFTAIRQ 365 (688)
T ss_pred CCCcccHHHHHHHHh
Confidence 11123456677765
No 57
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=75.70 E-value=20 Score=36.13 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=35.1
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCC-----cccCCCCCC--CcHHHHHHHHHHcCCEEEE
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGN-----FVPKASAFP--AGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~-----~~~~~~~FP--~G~~~l~~~ih~~Glk~Gi 58 (303)
..|+++|++.|.|=--+.....+ .|. ..+|| +|- ..++.|++.+|++|+|+=+
T Consensus 34 ~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 34 DYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred HHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 35789999999985555443211 233 33444 342 2589999999999999764
No 58
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=75.40 E-value=3.6 Score=34.76 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=35.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCC-----C----CcHHHHHHHHHHcCCE--EEEEecCCC
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAF-----P----AGIKALADYVHAKGLK--LGIYSDAGT 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~F-----P----~G~~~l~~~ih~~Glk--~Giy~~pg~ 64 (303)
.+++.|+++|+| .|.... .....|+++ + +=+..+-+...+.||| +|+|.++..
T Consensus 28 ~m~~~GidtlIl--q~~~~~-----~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~ 91 (166)
T PF14488_consen 28 AMKAIGIDTLIL--QWTGYG-----GFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDY 91 (166)
T ss_pred HHHHcCCcEEEE--EEeecC-----CcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchh
Confidence 478999999988 465532 122122222 1 2268888889999998 899988654
No 59
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=75.19 E-value=17 Score=40.37 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=66.7
Q ss_pred cchhcCccEEEEcccccCCC--------------CCCCCCcccCCCCCC----CcHHHHHHHHHHcCCEEEEEecC----
Q 038817 5 GLAALGYQYINLDDCWAELN--------------RDSTGNFVPKASAFP----AGIKALADYVHAKGLKLGIYSDA---- 62 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~--------------~d~~G~~~~~~~~FP----~G~~~l~~~ih~~Glk~Giy~~p---- 62 (303)
.|+++|++.|.|=--..... -+..+...|++ +|- ..+|.|++.+|++|+++=|=.-.
T Consensus 195 yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~ 273 (1221)
T PRK14510 195 YLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTG 273 (1221)
T ss_pred HHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEEcccccc
Confidence 68899999998722221110 01122334454 442 24999999999999996542111
Q ss_pred -CC------------------------------cccCC----CCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccc
Q 038817 63 -GT------------------------------QTCSK----TMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKE 107 (303)
Q Consensus 63 -g~------------------------------~~c~~----~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~ 107 (303)
+. ..|.. .+|.++.++...++.+.+.|||.+.+|-...-+..+..
T Consensus 274 ~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~ 353 (1221)
T PRK14510 274 ESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDG 353 (1221)
T ss_pred CCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccc
Confidence 00 00110 12334455566677777799999999986543222233
Q ss_pred hhHHHHHHHHhcCCCe
Q 038817 108 RYPIMSKALLNSGRPI 123 (303)
Q Consensus 108 ~y~~~~~al~~~g~~i 123 (303)
....+...+++..++.
T Consensus 354 f~~~~~~~l~ai~~d~ 369 (1221)
T PRK14510 354 FIDEFRQFLKAMDQDP 369 (1221)
T ss_pred hHHHHHHHHHHhCCCc
Confidence 3356666676655543
No 60
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=74.59 E-value=11 Score=33.30 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
++.+++.+|+.|+|+=|...+-...... ......+...++...+-|.||||.-.-.. .....+....|++++.++..
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~~~--~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEVAD--EKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHBSS--TTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhhcc--cccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 5777888888888877662221111111 11222445566778899999999998744 23334555678888887777
Q ss_pred C----eEEE
Q 038817 122 P----IFFS 126 (303)
Q Consensus 122 ~----i~~~ 126 (303)
| +..+
T Consensus 191 p~~~~Vk~s 199 (236)
T PF01791_consen 191 PGKVGVKAS 199 (236)
T ss_dssp TTTSEEEEE
T ss_pred CcceEEEEe
Confidence 7 7666
No 61
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=74.25 E-value=19 Score=30.90 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=59.0
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKT 84 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~ 84 (303)
.+|+.|+++++|=.+ .|.-..|+ + ++.-.+..++.|+++|.|.=.-..+ .+.+++-.+..++.
T Consensus 20 ~vk~~Gi~faiikat--------eG~~~~D~-~----~~~n~~~A~~aGl~vG~Yhf~~~~~----~~~a~~eA~~f~~~ 82 (192)
T cd06522 20 KLKNYGVKAVIVKLT--------EGTTYRNP-Y----AASQIANAKAAGLKVSAYHYAHYTS----AADAQAEARYFANT 82 (192)
T ss_pred HHHHcCCCEEEEEEc--------CCCCccCh-H----HHHHHHHHHHCCCeeEEEEEEecCC----hHHHHHHHHHHHHH
Confidence 367778888888431 24333453 2 5667778899999999998532111 11122222333455
Q ss_pred HHHcCcc---EEEeecCCCCC-CCccchhHHHHHHHHhcC--CCeEEEe
Q 038817 85 FASWGVD---YLKYDNCFNTG-TSPKERYPIMSKALLNSG--RPIFFSL 127 (303)
Q Consensus 85 ~~~wGvd---ylK~D~~~~~~-~~~~~~y~~~~~al~~~g--~~i~~~~ 127 (303)
++.-|+. .+-+|.=.... ........++.+.+++.| +|++|+.
T Consensus 83 ~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~~ 131 (192)
T cd06522 83 AKSLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYTS 131 (192)
T ss_pred HHHcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEcc
Confidence 5555553 35566533221 111223356777777665 6898873
No 62
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=73.20 E-value=29 Score=29.57 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred hhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc--CCEEEEEecCCCcccCC---CCCC-ccchHHH
Q 038817 7 AALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAK--GLKLGIYSDAGTQTCSK---TMPG-SLGHEEQ 80 (303)
Q Consensus 7 ~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~--Glk~Giy~~pg~~~c~~---~~pg-~~~~~~~ 80 (303)
...++++|++ +|... +..|...................+|++ |+|.-+-+.-....... ..+. ...+.+.
T Consensus 20 ~~~~~thvi~--~f~~v--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~ 95 (210)
T cd00598 20 PLSLCTHIIY--AFAEI--SSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANS 95 (210)
T ss_pred CcccCCEEEE--eeEEE--CCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHH
Confidence 3445777777 34432 223443321122233466677788887 88876655432211100 0111 1235566
Q ss_pred HHHHHHHcCccEEEeecCCCCCCC--ccchhHHHHHHHHhc-CC-CeEEEec
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTS--PKERYPIMSKALLNS-GR-PIFFSLC 128 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~~~~al~~~-g~-~i~~~~c 128 (303)
.++.+.++|+|.|=+|+-+..... ..+.|..+.+.|++. ++ ..++++.
T Consensus 96 ~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 96 LVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 777788999999999997654322 356777777777644 33 4666654
No 63
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=71.94 E-value=6.3 Score=40.68 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=58.0
Q ss_pred ccchhcCccEEEEcccccC-CCCCCCCCcccC----CCCC--CC------cHHHHHHHHHHcCCEEEEEe-----cC---
Q 038817 4 SGLAALGYQYINLDDCWAE-LNRDSTGNFVPK----ASAF--PA------GIKALADYVHAKGLKLGIYS-----DA--- 62 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~-~~~d~~G~~~~~----~~~F--P~------G~~~l~~~ih~~Glk~Giy~-----~p--- 62 (303)
.+||++||+-|+|=-..+- ..-.+.|.-..+ ..|| |+ -||.|++.+|++|+..=|=+ +.
T Consensus 262 phlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~ 341 (757)
T KOG0470|consen 262 PHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK 341 (757)
T ss_pred hHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC
Confidence 3689999999999655543 111122322211 1222 22 59999999999999864311 11
Q ss_pred -------CC---------------cccCC----CCCCccchHHHHHHH-HHHcCccEEEeecCCC
Q 038817 63 -------GT---------------QTCSK----TMPGSLGHEEQDAKT-FASWGVDYLKYDNCFN 100 (303)
Q Consensus 63 -------g~---------------~~c~~----~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 100 (303)
|+ .+|.. .+|-++.++-..++. +.++.||.+..|.+..
T Consensus 342 d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ss 406 (757)
T KOG0470|consen 342 DGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSS 406 (757)
T ss_pred CcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhh
Confidence 00 12322 245556666666666 5689999999998643
No 64
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=71.86 E-value=9.7 Score=34.27 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCC----------------CCc
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTG----------------TSP 105 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~----------------~~~ 105 (303)
.+.|.++++++|+.|-. +|+ -...++.+.+.|++++|+=-..-.. .++
T Consensus 58 ~~~L~~~~~~~gi~f~s--tpf--------------d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS--TPF--------------DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp HHHHHHHHHHTT-EEEE--EE---------------SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred HHHHHHHHHHcCCEEEE--CCC--------------CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 68999999999998842 443 2455777788899999996543221 124
Q ss_pred cchhHHHHHHHH----hcCCCeEEEeccCCC
Q 038817 106 KERYPIMSKALL----NSGRPIFFSLCEWGR 132 (303)
Q Consensus 106 ~~~y~~~~~al~----~~g~~i~~~~c~~g~ 132 (303)
......+.+|++ +-++++++--|...+
T Consensus 122 ~stl~EI~~Av~~~~~~~~~~l~llHC~s~Y 152 (241)
T PF03102_consen 122 MSTLEEIERAVEVLREAGNEDLVLLHCVSSY 152 (241)
T ss_dssp T--HHHHHHHHHHHHHHCT--EEEEEE-SSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 444455555543 234566666675433
No 65
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.74 E-value=40 Score=30.77 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
+..+++.+|+.||-.=+|.-|--..-...+.........-++.=++.|.|.||.++.... ..+++++..++-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 566777888888877777655311110000112223333344557999999999998653 567778888888
Q ss_pred CeEEE
Q 038817 122 PIFFS 126 (303)
Q Consensus 122 ~i~~~ 126 (303)
|++.+
T Consensus 204 pVvia 208 (265)
T COG1830 204 PVVIA 208 (265)
T ss_pred CEEEe
Confidence 88766
No 66
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=69.18 E-value=12 Score=33.30 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEee
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D 96 (303)
|+.+++.+|++|+++-+|..+. -....+.+.++|||+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~--------------~~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPD--------------RPNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCC--------------hHHHHHHHHHhCCCEEecC
Confidence 7888999999999999998764 1556788899999998765
No 67
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=68.13 E-value=12 Score=34.14 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++|++...|+-+-. ....++.+.++|||.|--|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n-------------~~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLN-------------DPENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCC-------------CHHHHHHHHHcCCCEEEecCC
Confidence 5788999999999999976210 144678899999999988864
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=67.05 E-value=24 Score=33.08 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=58.5
Q ss_pred chhcCccEEEEc----ccccCCCCCC-CCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcc---------c----
Q 038817 6 LAALGYQYINLD----DCWAELNRDS-TGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQT---------C---- 67 (303)
Q Consensus 6 l~~~Gy~~v~iD----dgW~~~~~d~-~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~---------c---- 67 (303)
++.-|.+.++|| +|.-....+. .-.-......+..-++.|++.+|++|+.+=-++..|-.. +
T Consensus 22 i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~ 101 (316)
T PF13200_consen 22 IKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTK 101 (316)
T ss_pred HHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECC
Confidence 566788999995 3432211110 000001112222349999999999999877666554311 0
Q ss_pred --------------CCCCCCccchHHHHHHHHHHcCccEEEeecCCCC
Q 038817 68 --------------SKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNT 101 (303)
Q Consensus 68 --------------~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 101 (303)
.+..+.+.+|.-..++..++.|||=|-+|++-.+
T Consensus 102 ~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 102 DGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFP 149 (316)
T ss_pred CCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecC
Confidence 0112345678888889999999999999998543
No 69
>PRK06233 hypothetical protein; Provisional
Probab=66.14 E-value=27 Score=33.44 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=49.9
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCC-----------cHHHHHHHHHHc--CCEEEEEecCCCcccCCC
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPA-----------GIKALADYVHAK--GLKLGIYSDAGTQTCSKT 70 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~-----------G~~~l~~~ih~~--Glk~Giy~~pg~~~c~~~ 70 (303)
+.|.++|++||||||.-....++.... + ..+|. .++.+-.-+..+ ++++++|+..|... +
T Consensus 178 ~~L~~aG~~~IQiDeP~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~--~- 250 (372)
T PRK06233 178 QHFYDLGARYIQLDDTTWAYLISKLND---T-ENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFK--S- 250 (372)
T ss_pred HHHHHCCCCEEEEcCCCHHhhhccccc---c-ccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCC--C-
Confidence 357889999999999754322221111 0 01111 112222223333 77888888877322 1
Q ss_pred CCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 71 MPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 71 ~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
...+.+-++..+..+.+..||.+=+++..
T Consensus 251 ~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 279 (372)
T PRK06233 251 TYLFSGGYEPVAKYLGQLNYDGFFLEYDN 279 (372)
T ss_pred cccccCcHHHHHHHHHhCCCCEEEEecCC
Confidence 11222334556778888999999888854
No 70
>PRK06852 aldolase; Validated
Probab=65.94 E-value=45 Score=31.11 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcC-
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG- 120 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g- 120 (303)
+..+++.+|+.||-.-+|.-|--.... .+.....+...++.=++.|-|+||..++..... ..-..+++.+..+|
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~---g~~e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA---NPAELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC---CCHHHHHHHHHhCCC
Confidence 566777888888877766554311110 111223556666777899999999999953110 11245666666774
Q ss_pred CCeEEE
Q 038817 121 RPIFFS 126 (303)
Q Consensus 121 ~~i~~~ 126 (303)
.|++++
T Consensus 231 vpVvia 236 (304)
T PRK06852 231 TKVVCA 236 (304)
T ss_pred CcEEEe
Confidence 466655
No 71
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=65.18 E-value=13 Score=33.75 Aligned_cols=43 Identities=28% Similarity=0.422 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|+.|++..+|+-.- .. ...++.+.+||||.|=-|++
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~----n~---------~~~~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLN----ND---------AEAVERQADLGVDGVIVDHV 282 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCC----CC---------HHHHHHHHHcCCCEEEeCCC
Confidence 578999999999999997411 11 44678899999999988864
No 72
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=64.35 E-value=8.5 Score=33.45 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCC
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
....++++||++|+|+|+=+.||+
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGT 123 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCC
Confidence 368899999999999999999986
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=64.16 E-value=28 Score=36.07 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=55.5
Q ss_pred cchhcCccEEEEcccccCCC--------------CCCCCCcccCCCCCCC-------cHHHHHHHHHHcCCEEEEEecCC
Q 038817 5 GLAALGYQYINLDDCWAELN--------------RDSTGNFVPKASAFPA-------GIKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~--------------~d~~G~~~~~~~~FP~-------G~~~l~~~ih~~Glk~Giy~~pg 63 (303)
.|+++|++.|.|=--.+... -+......|++ +|-. .+|.|++.+|++|+|+=+=.-.-
T Consensus 187 YLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~-~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~N 265 (658)
T PRK03705 187 YLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP-AYASGPETALDEFRDAVKALHKAGIEVILDVVFN 265 (658)
T ss_pred HHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc-ccCCCCcchHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 68999999998721111100 01112234554 4432 49999999999999975422110
Q ss_pred ---------C------------------------cccCC----CCCCccchHHHHHHHHH-HcCccEEEeecCCC
Q 038817 64 ---------T------------------------QTCSK----TMPGSLGHEEQDAKTFA-SWGVDYLKYDNCFN 100 (303)
Q Consensus 64 ---------~------------------------~~c~~----~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~ 100 (303)
. ..|.. .+|.++.++...++.+. +.|||.+.+|-...
T Consensus 266 Ht~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~ 340 (658)
T PRK03705 266 HSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATV 340 (658)
T ss_pred CccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhh
Confidence 0 01211 13445566666677765 68999999998654
No 74
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.84 E-value=22 Score=33.54 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
.+++.|.++++++|+.|- ++|+ -...++.+.+.|++++|+=-.
T Consensus 76 e~~~~L~~~~~~~Gi~~~--stpf--------------d~~svd~l~~~~v~~~KIaS~ 118 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFL--STPF--------------DLESADFLEDLGVPRFKIPSG 118 (329)
T ss_pred HHHHHHHHHHHHhCCcEE--EEeC--------------CHHHHHHHHhcCCCEEEECcc
Confidence 368999999999998872 2333 255678888999999998654
No 75
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=63.63 E-value=36 Score=25.76 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=26.0
Q ss_pred eeecCCeeEEEEEcCCCCEEEEEEeCCC-CceEEEEEcccccccccCCCeeEEEecCC
Q 038817 247 VKKEGDLEVWAGPLSGNRVAVVLWNRGS-SKATVTANWSDIGLKLNHSTVVNARDLWQ 303 (303)
Q Consensus 247 v~~~~~~~vw~~~l~~g~~~va~fN~~~-~~~~~~~~~~~lGl~~~~~~~~~v~DlW~ 303 (303)
+..+...-++.|...+....+++-|.+. .....+++++..|+ . ....|.|+.+
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f--~--~g~~v~dVls 55 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGF--S--AGTEVTDVLS 55 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS--------TT-EEEETTT
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCC--C--CCCEEEEEec
Confidence 3334455566666545556666666776 57788888887777 3 3457777653
No 76
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=61.72 E-value=27 Score=33.14 Aligned_cols=83 Identities=16% Similarity=0.044 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCEEEEEecCC-CcccCCCCCCcc-chHHHHHHHHHHcCccEEEeecCCCCC--CCccchhHHHHHH---
Q 038817 43 KALADYVHAKGLKLGIYSDAG-TQTCSKTMPGSL-GHEEQDAKTFASWGVDYLKYDNCFNTG--TSPKERYPIMSKA--- 115 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg-~~~c~~~~pg~~-~~~~~~~~~~~~wGvdylK~D~~~~~~--~~~~~~y~~~~~a--- 115 (303)
+.+..+.|++|+|+= ...+ ...-.. .|..+ .+++..++.++++|+|.|-+|+-+... ....+.|..+.+.
T Consensus 67 ~~~~~~A~~~~v~v~--~~~~~~~~~l~-~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 67 DELLCYAHSKGVRLV--LKGDVPLEQIS-NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HHHHHHHHHcCCEEE--EECccCHHHcC-CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH
Confidence 578889999999963 2211 110001 22223 366788888999999999999987643 2234566555544
Q ss_pred -HHhcCCCeEEEec
Q 038817 116 -LLNSGRPIFFSLC 128 (303)
Q Consensus 116 -l~~~g~~i~~~~c 128 (303)
|.+.++...++++
T Consensus 144 ~l~~~~~~~~Lsva 157 (358)
T cd02875 144 AFKKENPGYQISFD 157 (358)
T ss_pred HHhhcCCCcEEEEE
Confidence 4444555555543
No 77
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=61.40 E-value=64 Score=30.59 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=32.1
Q ss_pred hHHHHHHHHH--HcCccEEEeecCCCCC----C-------CccchhHHHHHHHHhcCCCeEEE
Q 038817 77 HEEQDAKTFA--SWGVDYLKYDNCFNTG----T-------SPKERYPIMSKALLNSGRPIFFS 126 (303)
Q Consensus 77 ~~~~~~~~~~--~wGvdylK~D~~~~~~----~-------~~~~~y~~~~~al~~~g~~i~~~ 126 (303)
.+...++.+. +.|+|.+|+.+..... . +..+.-..+.+....++.|+++.
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE
Confidence 3455567788 4999999999986531 1 11222234666666788898874
No 78
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=60.81 E-value=23 Score=31.93 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++|+++.+|+ +.. .+. -...++.+.++|||.|=-|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~-~~n---------~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEP-VND---------NEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCC-CCC---------CHHHHHHHHHcCCCEEEcCCH
Confidence 678999999999999997 321 111 156778889999999988865
No 79
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=58.70 E-value=40 Score=36.19 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCEEEEEec-----C--------------CC------------cc-cCC---CCCCccchHHHHHHHH-
Q 038817 42 IKALADYVHAKGLKLGIYSD-----A--------------GT------------QT-CSK---TMPGSLGHEEQDAKTF- 85 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~-----p--------------g~------------~~-c~~---~~pg~~~~~~~~~~~~- 85 (303)
+|.|++.+|++||++=+=.- . +. .+ |.. .+|-++.|+...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999753210 0 00 01 111 1233445555556665
Q ss_pred HHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEeccCC
Q 038817 86 ASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWG 131 (303)
Q Consensus 86 ~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g 131 (303)
.+.|||.+.+|-+.+- ..+....+++++++..+++++---.|.
T Consensus 486 ~ey~VDGFRfDlm~~~---~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHH---PKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhC---CHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 4799999999987652 345566778888888887765433564
No 80
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=58.48 E-value=28 Score=29.31 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
-+.+++.+|+.|+++-+|+-.. ....++.+.++|||+|=-|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~--------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND--------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC--------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999997642 25678889999999987664
No 81
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=58.09 E-value=31 Score=30.40 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|++|+++.+|+-- . ...++.+.+||||.|=-|++.
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn------~---------~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIN------D---------LKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCC------C---------HHHHHHHHHcCCCEEEeCCCC
Confidence 68899999999999998632 1 457889999999999988864
No 82
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=57.49 E-value=29 Score=28.09 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccchhcCccEEEEccc----ccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCC
Q 038817 4 SGLAALGYQYINLDDC----WAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdg----W~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
.-|+++|.+.++|..+ |.-. ..+.|..-|.-+ -+=|+.+++.+|++|+++=+|++...
T Consensus 7 ~~lk~~~v~si~i~a~~h~g~ayY-Pt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 7 DTLKEAHVNSITIFAKCHGGYAYY-PTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHhCCCEEEEEcccccEEEEc-cCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 4588999999999654 3221 112355544443 24479999999999999999998764
No 83
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=57.32 E-value=7.6 Score=30.80 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=31.6
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEE
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKL 56 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~ 56 (303)
+++.+++.|++-|++|-|= -+|-+-+++|++-+++.||+|
T Consensus 75 la~ra~~~gi~~vvfDrgg---------------~~YhGrv~A~a~~aRe~Gl~F 114 (114)
T TIGR00060 75 VAERLKEKGIKDVVFDRGG---------------YKYHGRVAALAEAAREAGLNF 114 (114)
T ss_pred HHHHHHHCCCCEEEEeCCC---------------CcchHHHHHHHHHHHHhCCCC
Confidence 4567888999999998541 245445999999999999987
No 84
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.03 E-value=65 Score=29.40 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
+..+++.+|+.||-.-+++..|.. ......++...++.=+|.|-|+||..++. ..+.+.+.....
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~-----~~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~v 193 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKD-----MVRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPV 193 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCC-----cCchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCC
Confidence 577888999999976665544321 11122355666777789999999999972 456666666667
Q ss_pred CeEEE
Q 038817 122 PIFFS 126 (303)
Q Consensus 122 ~i~~~ 126 (303)
|+++.
T Consensus 194 PVvia 198 (264)
T PRK08227 194 PIVIA 198 (264)
T ss_pred cEEEe
Confidence 88765
No 85
>smart00642 Aamy Alpha-amylase domain.
Probab=57.00 E-value=22 Score=29.86 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=31.8
Q ss_pred cchhcCccEEEEcccccCCCC--CCCCCcc-----cCCCCCC--CcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNR--DSTGNFV-----PKASAFP--AGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~--d~~G~~~-----~~~~~FP--~G~~~l~~~ih~~Glk~Gi 58 (303)
-|+++|++.|.|=--+..... ...|... +++ +|- ..++.|++.+|++|+++=+
T Consensus 27 yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 27 YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 488999999988222222110 1122222 222 331 3589999999999998654
No 86
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=56.82 E-value=25 Score=31.74 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|++|++..+|+--- ...++.+.+||||.|=-|+..
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P~ 262 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLND---------------EEDFEEAFDLGADGVMTDSPT 262 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECC---------------HHHHHHHHhcCCCEEEeCCcc
Confidence 678999999999999997421 456888999999999888753
No 87
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=56.20 E-value=3.2 Score=39.56 Aligned_cols=141 Identities=19% Similarity=0.164 Sum_probs=81.8
Q ss_pred HHHcCccEEEeecCCCCC-CCccchhHHHHHHHHhcCCCeEEEeccCCCCCcCcccccccCeEeecCCCCCchhhHHHHH
Q 038817 85 FASWGVDYLKYDNCFNTG-TSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLA 163 (303)
Q Consensus 85 ~~~wGvdylK~D~~~~~~-~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~ 163 (303)
+.+|++.+.++|....+. --....|..|.+++.+.|-. -+++-||..| |-|..+.+..
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~-------------------~vGY~yi~iD--DCW~e~~Rd~ 95 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLA-------------------DVGYEYINID--DCWSEVTRDS 95 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhHHH-------------------hcCcEEEech--hhhhhhccCC
Confidence 689999999999876542 12356778888888654411 1122233322 3344433222
Q ss_pred Hhhcccccc----cC---CCCcCCCcceecCC----CC---CChHHHHHHHHHHHHhcCCeeeccCCCCCCHHHHHhhhc
Q 038817 164 DQNDKWASY----AG---PGGYNDPDMLEVGN----GG---MTTEEYRAHFSIWALAKAPLLIGCDIRAMDKITFNILSN 229 (303)
Q Consensus 164 ~~~~~~~~~----~~---~~~~nDpD~l~vg~----~~---lt~~E~r~~~~~wa~~~spL~~g~dl~~l~~~~~~~l~N 229 (303)
+. ...+.. ++ --.|.+-++|-+|- +. ++..+ +....|..+.++..-|.|+.+++.-....+++
T Consensus 96 ~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PG--S~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~ 172 (414)
T KOG2366|consen 96 DG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPG--SLGHEESDAKTFADWGVDYLKLDGCFNNLITM 172 (414)
T ss_pred cc-ccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCc--ccchhhhhhhhhHhhCCcEEeccccccccccc
Confidence 21 000000 00 01355555655552 11 22333 77788888899999999999988766677777
Q ss_pred hHHHHhhcccCCCccEEeee
Q 038817 230 KEVIAVNQDKLGVQGKKVKK 249 (303)
Q Consensus 230 ~~~iai~qd~lg~~~~~v~~ 249 (303)
++-..+....+...+||+..
T Consensus 173 ~~~Yp~ms~aLN~tGrpi~y 192 (414)
T KOG2366|consen 173 PEGYPIMSRALNNTGRPIFY 192 (414)
T ss_pred cccchhHHHHHhccCCceEE
Confidence 77766666666666777753
No 88
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=56.00 E-value=30 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHHHHHHHc-CCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAK-GLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~-Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++ |+++-.|+--. ..+++.+.+||||.|=-|+.
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~---------------~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINT---------------ADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCC---------------HHHHHHHHHcCCCEEEeCCc
Confidence 7889999999 99999998632 45788899999999988874
No 89
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=54.73 E-value=62 Score=28.77 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCCc--cc--CCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCC------CccchhH
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGTQ--TC--SKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGT------SPKERYP 110 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~~--~c--~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~y~ 110 (303)
-.+.....+|++|.|.=+-+..... .. ..+..+...+.+..++.+.++|+|.|=+|+-+.... ...+.|.
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~ 131 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFV 131 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHH
Confidence 3677788899999997554432211 11 111112345667788888999999999998654321 1345677
Q ss_pred HHHHHHHh-cCC-CeEEEec
Q 038817 111 IMSKALLN-SGR-PIFFSLC 128 (303)
Q Consensus 111 ~~~~al~~-~g~-~i~~~~c 128 (303)
.+.++|++ .++ ..++++.
T Consensus 132 ~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 132 RLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHhCcCCcEEEEE
Confidence 77777764 343 4555543
No 90
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=54.62 E-value=24 Score=32.62 Aligned_cols=88 Identities=20% Similarity=0.230 Sum_probs=59.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCC-----CCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASA-----FPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~-----FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~ 79 (303)
.+.++|.+.|+++|-|.... ..+++. .|. ++.+++.+|+.|.+.+++.. +.+ .
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~-------~isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~c------G~~--------~ 233 (330)
T cd03465 176 ALIEAGADGIYISDPWASSS-------ILSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNC------GDT--------A 233 (330)
T ss_pred HHHHhCCCEEEEeCCccccC-------CCCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEEC------CCc--------h
Confidence 45677999999999886531 111111 255 89999999999988888654 221 2
Q ss_pred HHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEE
Q 038817 80 QDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFF 125 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~ 125 (303)
...+.+.+.|+|-+-+|.+. .+.++.+..|+.+.+
T Consensus 234 ~~~~~l~~~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i 268 (330)
T cd03465 234 PILELMADLGADVFSIDVTV-----------DLAEAKKKVGDKACL 268 (330)
T ss_pred hHHHHHHHhCCCeEeecccC-----------CHHHHHHHhCCceEE
Confidence 46788899999998888764 234444556665533
No 91
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=53.59 E-value=49 Score=28.21 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=55.9
Q ss_pred chhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHH
Q 038817 6 LAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTF 85 (303)
Q Consensus 6 l~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~ 85 (303)
+++.|+++++|=..--. .|....|+ + +..-.+..++.||++|.|.=+. +.. .....+-.+..++.+
T Consensus 18 ~k~~g~~fviiKateG~-----~g~~~~D~-~----~~~~~~~A~~aGl~~G~YHf~~---~~~-~~~a~~qA~~f~~~~ 83 (191)
T cd06414 18 VKASGVDFAIIRAGYGG-----YGELQEDK-Y----FEENIKGAKAAGIPVGVYFYSY---AVT-VAEAREEAEFVLRLI 83 (191)
T ss_pred HHhCCCCEEEEEEecCC-----CcccccCH-H----HHHHHHHHHHCCCceEEEEEEE---eCC-HHHHHHHHHHHHHHh
Confidence 56667777777322111 12213443 2 6677778889999999998532 110 001122223344555
Q ss_pred HHcCccE-EEeecCCCCC----CC---ccchhHHHHHHHHhcC-CCeEEE
Q 038817 86 ASWGVDY-LKYDNCFNTG----TS---PKERYPIMSKALLNSG-RPIFFS 126 (303)
Q Consensus 86 ~~wGvdy-lK~D~~~~~~----~~---~~~~y~~~~~al~~~g-~~i~~~ 126 (303)
...+.++ +-+|.=.... .. ..+...++.+.|++.| +|++|+
T Consensus 84 ~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iY~ 133 (191)
T cd06414 84 KGYKLSYPVYYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPGIYA 133 (191)
T ss_pred hccCCCCCeEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 5556554 3456522111 11 1233456777787777 567775
No 92
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=53.29 E-value=21 Score=32.55 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=51.8
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCCCCC-----CCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchH
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKASAF-----PAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHE 78 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~F-----P~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~ 78 (303)
+.+.++|.+.|++||-|.... . ....++.| |. ++.+++.+|..|.+.+++ .|+..
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~----~-~~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH------~cg~~-------- 210 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQI----N-SFLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHH------SCYDA-------- 210 (306)
T ss_pred HHHHHhCCCEEEEeccccccc----C-CCCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEE------ECCCH--------
Confidence 356788999999999888642 1 01111122 43 788889899888777764 45431
Q ss_pred HHHHHHHHHcCccEEEeecCC
Q 038817 79 EQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 79 ~~~~~~~~~wGvdylK~D~~~ 99 (303)
......+.+.|+|.+-+|+..
T Consensus 211 ~~~~~~l~~~~~d~~~~d~~~ 231 (306)
T cd00465 211 ADLLEEMIQLGVDVISFDMTV 231 (306)
T ss_pred HHHHHHHHHhCcceEeccccc
Confidence 345777888999999998774
No 93
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.65 E-value=46 Score=31.92 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=55.7
Q ss_pred cccchhcCccEEEEcc---ccc---------CCCCCCCCCcccCCCCCCCcHHHHHHHHHHc---CCEEEEEecCCCccc
Q 038817 3 TSGLAALGYQYINLDD---CWA---------ELNRDSTGNFVPKASAFPAGIKALADYVHAK---GLKLGIYSDAGTQTC 67 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDd---gW~---------~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~---Glk~Giy~~pg~~~c 67 (303)
+...+++||+-|.|=. ||- ....|++|--.-|..|| +..+++.|++. ++.+|+=+.+....+
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf---~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRF---AIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 3456789999999976 772 22346677655666677 56788888875 567777666532111
Q ss_pred CC---CC------CCcc--chHHHHHHHHHHcCccEEEee
Q 038817 68 SK---TM------PGSL--GHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 68 ~~---~~------pg~~--~~~~~~~~~~~~wGvdylK~D 96 (303)
.. .. ++-. +.....++.+.+.|+|||-+-
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 10 01 1112 222356777888888888764
No 94
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=52.51 E-value=20 Score=33.01 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCccEEEeecCCCCCCC--ccchhHHHHHHHHhcCCCeEEEecc
Q 038817 79 EQDAKTFASWGVDYLKYDNCFNTGTS--PKERYPIMSKALLNSGRPIFFSLCE 129 (303)
Q Consensus 79 ~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~~~~al~~~g~~i~~~~c~ 129 (303)
+..++.+++||+|||-+--+..+.++ +...+....+.|..-.+.|+.+ |-
T Consensus 145 eNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~L 196 (360)
T KOG2672|consen 145 ENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-CL 196 (360)
T ss_pred ccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-hc
Confidence 66888999999999999877665332 3344455566666667778777 63
No 95
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=52.51 E-value=35 Score=28.53 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=33.8
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCccc-CC-CCCCCcHHHHHHHHHHcCCEEEEEec
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVP-KA-SAFPAGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~-~~-~~FP~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
-|++.|++.|++|-. |.+.+ +. .-|| |+..+.++++++|++++|-++
T Consensus 19 ~~~~~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 19 LLKKVGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred HHHHCCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeC
Confidence 367789999999742 22222 12 2455 699999999999999998766
No 96
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=51.56 E-value=40 Score=30.03 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|++|++..+|+-.. ...++.+.++|||.|=-|...
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~---------------~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND---------------PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHcCCCEEEeCChH
Confidence 689999999999999996321 345788999999999988754
No 97
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.90 E-value=63 Score=30.84 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=54.8
Q ss_pred cccchhcCccEEEEcccccCCCCCC-CCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHH
Q 038817 3 TSGLAALGYQYINLDDCWAELNRDS-TGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQD 81 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW~~~~~d~-~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~ 81 (303)
+..|+++|+.++- .|.++. |.+ ++..-+. ..|++.|.++.++.|+.+-- ++ |....
T Consensus 138 A~~lk~~g~~~~r--~~~~kp-Rtsp~~f~g~~----~e~l~~L~~~~~~~Gl~~~t--~v--------------~d~~~ 194 (360)
T PRK12595 138 AKALKAKGLKLLR--GGAFKP-RTSPYDFQGLG----VEGLKILKQVADEYGLAVIS--EI--------------VNPAD 194 (360)
T ss_pred HHHHHHcCCcEEE--ccccCC-CCCCccccCCC----HHHHHHHHHHHHHcCCCEEE--ee--------------CCHHH
Confidence 4567778876655 344432 332 2211111 14789999999999987632 22 22445
Q ss_pred HHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEe
Q 038817 82 AKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSL 127 (303)
Q Consensus 82 ~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 127 (303)
++.+.+. +|++|+=--... -..+.+++.++|+|++++.
T Consensus 195 ~~~l~~~-vd~lkI~s~~~~-------n~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 195 VEVALDY-VDVIQIGARNMQ-------NFELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHh-CCeEEECccccc-------CHHHHHHHHccCCcEEEeC
Confidence 6777788 999998542211 1245566666677776663
No 98
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=50.87 E-value=37 Score=29.46 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
+.+++.+|++|+++.+|+-- . ...++.+.++|||+|=-|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn------~---------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVN------D---------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCC------C---------HHHHHHHHHcCCCEEeCCC
Confidence 68899999999999999631 1 3456888899999997775
No 99
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=50.69 E-value=59 Score=27.43 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=53.9
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKT 84 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~ 84 (303)
..++.|+++++|=.+ .|.-..|+ . ++.-.+.+++.||++|+|.=.-..++. -+..-.+..++.
T Consensus 17 ~~~~~g~~fviikat--------eG~~~~D~----~-f~~n~~~a~~aGl~vG~Yhf~~~~~~~----~a~~eA~~f~~~ 79 (177)
T cd06523 17 DTLSKQLDLVIIRVQ--------YGSNYVDL----K-YKNNIKEFKKRGIPFGVYAFARGTSTA----DAKAEARDFYNR 79 (177)
T ss_pred HHHhCCCCEEEEEEe--------CCCcccCH----H-HHHHHHHHHHcCCCeEEEEEeccCCHH----HHHHHHHHHHHH
Confidence 345678888888442 23333453 2 677788899999999999743111110 011111222233
Q ss_pred HHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcC-CC-eEEE
Q 038817 85 FASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG-RP-IFFS 126 (303)
Q Consensus 85 ~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g-~~-i~~~ 126 (303)
... .-.++=+|.=............++.+.+++.| .+ ++|+
T Consensus 80 ~~~-~~~~~~lD~E~~~~~~~~~~~~~f~~~v~~~g~~~~~lYt 122 (177)
T cd06523 80 ANK-KPTFYVLDVEVTSMSDMNAGVQAFISELRRLGAKKVGLYI 122 (177)
T ss_pred hcC-CCceEEEeeccCCcchHHHHHHHHHHHHHHccCCcEEEEc
Confidence 333 44556677543222112222345667776654 44 5665
No 100
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=50.31 E-value=1.6e+02 Score=25.15 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCEEEEEe-cCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 42 IKALADYVHAKGLKLGIYS-DAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~-~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+..+.++++++|+++|+-. .|. + ....++...+.|+||+|+..-
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~----------t---~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVK----------D---KVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC----------C---hHHHHHHHHHcCCCEEEEcCC
Confidence 6889999999999999842 322 1 234455667789999999643
No 101
>TIGR03586 PseI pseudaminic acid synthase.
Probab=50.09 E-value=63 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
.+.|.++++++|+.|- ++|+ -...++.+.+.|++++|+=-..
T Consensus 79 ~~~L~~~~~~~Gi~~~--stpf--------------d~~svd~l~~~~v~~~KI~S~~ 120 (327)
T TIGR03586 79 HKELFERAKELGLTIF--SSPF--------------DETAVDFLESLDVPAYKIASFE 120 (327)
T ss_pred HHHHHHHHHHhCCcEE--EccC--------------CHHHHHHHHHcCCCEEEECCcc
Confidence 3789999999999873 2332 2345677889999999986543
No 102
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=49.83 E-value=41 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
+.+++.+|++|++..+|+--- ...++.+.++|||.|=-|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~---------------~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE---------------EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEeCCC
Confidence 678999999999999997321 3567888899999998775
No 103
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=49.61 E-value=16 Score=24.92 Aligned_cols=30 Identities=27% Similarity=0.098 Sum_probs=14.6
Q ss_pred eEEEEEcCCCCEEEEEEeCCCCceEEEEEcc
Q 038817 254 EVWAGPLSGNRVAVVLWNRGSSKATVTANWS 284 (303)
Q Consensus 254 ~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~ 284 (303)
++=.+. .++..|+-++|+++++++++++-+
T Consensus 3 ev~~R~-~~~~~y~F~~N~s~~~~~v~l~~~ 32 (58)
T PF08533_consen 3 EVTVRE-NDGGRYLFLLNFSDEPQTVTLPES 32 (58)
T ss_dssp EEEE-----ETTEEEEEE-SSS-EE----TT
T ss_pred EEEEEE-cCCCEEEEEEECCCCCEEEEcCCC
Confidence 344454 344568999999999999988433
No 104
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=49.43 E-value=25 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred EEEcCCCCEEEEEEeCCCCceEEE
Q 038817 257 AGPLSGNRVAVVLWNRGSSKATVT 280 (303)
Q Consensus 257 ~~~l~~g~~~va~fN~~~~~~~~~ 280 (303)
.....+++.+++++|++++++++.
T Consensus 36 ~~r~~~~~~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 36 FRRTGGGERLLVAFNLSDEPVTVP 59 (89)
T ss_dssp EEEEETTEEEEEEEE-SSS-EEEE
T ss_pred EEEEcCCceEEEEEecCCCcEEcc
Confidence 344456678999999999888887
No 105
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.31 E-value=68 Score=29.23 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred cccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHH
Q 038817 3 TSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDA 82 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~ 82 (303)
++.||++|..++-. +-++ .|.+-..++.-. ..|++.|.+++++.|+.+-- +++ ....+
T Consensus 47 A~~lk~~g~~~~r~--~~~k-pRTs~~s~~G~g---~~gl~~l~~~~~~~Gl~~~t--e~~--------------d~~~~ 104 (266)
T PRK13398 47 AEKLKELGVHMLRG--GAFK-PRTSPYSFQGLG---EEGLKILKEVGDKYNLPVVT--EVM--------------DTRDV 104 (266)
T ss_pred HHHHHHcCCCEEEE--eeec-CCCCCCccCCcH---HHHHHHHHHHHHHcCCCEEE--eeC--------------ChhhH
Confidence 56788888886665 3232 244311221101 35889999999999987642 221 23345
Q ss_pred HHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEEe
Q 038817 83 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSL 127 (303)
Q Consensus 83 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 127 (303)
+.+.+. +|++|+=--... -..+.+++.++|+|++++.
T Consensus 105 ~~l~~~-vd~~kIga~~~~-------n~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 105 EEVADY-ADMLQIGSRNMQ-------NFELLKEVGKTKKPILLKR 141 (266)
T ss_pred HHHHHh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeC
Confidence 555666 788887432211 1345666667788887774
No 106
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=49.29 E-value=36 Score=30.01 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 44 ALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 44 ~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
..+..+|++|+++.+|+--. ...++.+.+||||.|=-|+
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNE---------------PAEALALAARGVALIETDN 228 (229)
T ss_pred hhhHHHHhCCceEEEEEcCC---------------HHHHHHHHHhCCcEEEcCC
Confidence 34677999999999998532 4467889999999987764
No 107
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=49.14 E-value=64 Score=32.78 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=94.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCC-----CCCC---------cHHHHHHHHHHcCCEEEEEecCCCc-----
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKAS-----AFPA---------GIKALADYVHAKGLKLGIYSDAGTQ----- 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~-----~FP~---------G~~~l~~~ih~~Glk~Giy~~pg~~----- 65 (303)
.|+.+-+..++.=| |+-... .+.|... +|++ =+|..++.+|+.|+|.=.|......
T Consensus 126 ~L~~yHIN~~QFYD-W~~rH~----~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~ 200 (559)
T PF13199_consen 126 QLNRYHINGLQFYD-WMYRHH----KPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYE 200 (559)
T ss_dssp HHHHTT--EEEETS---SBTT----B-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--
T ss_pred HHHhhCcCeEEEEe-eccccC----CcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcc
Confidence 35556666777733 664321 2222222 4444 2699999999999999999764320
Q ss_pred -------------ccCC-----------------CCCCc---cchH-HHHHHHHHHcCccEEEeecCCCC-------C--
Q 038817 66 -------------TCSK-----------------TMPGS---LGHE-EQDAKTFASWGVDYLKYDNCFNT-------G-- 102 (303)
Q Consensus 66 -------------~c~~-----------------~~pg~---~~~~-~~~~~~~~~wGvdylK~D~~~~~-------~-- 102 (303)
.+.. ..|+. +.|+ ++..+.+...|||.+-+|-.+.. +
T Consensus 201 ~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~ 280 (559)
T PF13199_consen 201 EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNK 280 (559)
T ss_dssp S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---
T ss_pred cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCC
Confidence 1110 01333 3454 34445578899999999998742 1
Q ss_pred C-CccchhHHHHHHHHhcC--CCeEEE-eccCCCC-----CcCcccccccCeEeecCCCCCchhhHHHHHHhhcccc-cc
Q 038817 103 T-SPKERYPIMSKALLNSG--RPIFFS-LCEWGRE-----DPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWA-SY 172 (303)
Q Consensus 103 ~-~~~~~y~~~~~al~~~g--~~i~~~-~c~~g~~-----~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~-~~ 172 (303)
. .....|..+.+++++.. .++++. +..||.. .+..+ -|..+| +..++...+.+.+..+..++ ..
T Consensus 281 i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~--lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~ 354 (559)
T PF13199_consen 281 IYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDF--LYNEVW----DDYDTYGDLKRIIDQNRKYTSSG 354 (559)
T ss_dssp GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SS--EEEE------SBS-BHHHHHHHHHHHHHHH---
T ss_pred chhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccce--eeeecc----cccccHHHHHHHHHHHhhhhccc
Confidence 1 23667788888887544 567764 3455532 11122 356777 44566777777777654442 11
Q ss_pred cCC---CCcCCCcceecCCCCCChHHHHHHHHHHHHhcCCeeeccC
Q 038817 173 AGP---GGYNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCD 215 (303)
Q Consensus 173 ~~~---~~~nDpD~l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~d 215 (303)
..+ ..|... --|+.-.-+-.++.|.-|+.|.+|++
T Consensus 355 gk~~V~AAYmn~--------fn~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 355 GKSTVVAAYMNY--------FNTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp S--EEEE---------------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred cchhhhHHHhhh--------ccchhhHHHHHHHHHCCCceeeecCC
Confidence 110 011110 11234444666777777999999884
No 108
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.98 E-value=15 Score=32.94 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=68.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCc-----ccCCCCCC--CcHHHHHHHHHHcCCEEEEEecCCC-----c-------
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNF-----VPKASAFP--AGIKALADYVHAKGLKLGIYSDAGT-----Q------- 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~-----~~~~~~FP--~G~~~l~~~ih~~Glk~Giy~~pg~-----~------- 65 (303)
-|+++|++.|.|=--+.... ...|.. .+|+ +|- ..++.|++.+|++|+|+=+=+.+.. .
T Consensus 12 yl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~ 89 (316)
T PF00128_consen 12 YLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLN 89 (316)
T ss_dssp HHHHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHT
T ss_pred HHHHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecccccccccccccccc
Confidence 47889999998843333321 223433 3444 552 2489999999999999875332210 0
Q ss_pred ---------c------cCC---------------------------------CCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 66 ---------T------CSK---------------------------------TMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 66 ---------~------c~~---------------------------------~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
. +.. .+|.++.++...++.+.+-|||.+.+|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~ 169 (316)
T PF00128_consen 90 YFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDA 169 (316)
T ss_dssp HTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETT
T ss_pred ccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhceEeEEEEcc
Confidence 0 000 0112234455566777888999999998
Q ss_pred CCCCCCCccchhHHHHHHHHhcCCCeE
Q 038817 98 CFNTGTSPKERYPIMSKALLNSGRPIF 124 (303)
Q Consensus 98 ~~~~~~~~~~~y~~~~~al~~~g~~i~ 124 (303)
...- ..+....+.+++++..+.++
T Consensus 170 ~~~~---~~~~~~~~~~~~~~~~~~~~ 193 (316)
T PF00128_consen 170 AKHI---PKEFWKEFRDEVKEEKPDFF 193 (316)
T ss_dssp GGGS---SHHHHHHHHHHHHHHHTTSE
T ss_pred cccc---chhhHHHHhhhhhhhccccc
Confidence 7652 23555677777775544443
No 109
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.88 E-value=39 Score=31.12 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++|+++..|+-.- -....++.+.++|||.|--|+.
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~-------------n~~~~~~~l~~~GVdgIiTD~~ 293 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDN-------------NDPENVKKQKELGVDGVIYDRV 293 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCC-------------CCHHHHHHHHHcCCCEEEecCC
Confidence 578899999999998887621 0145678899999999998863
No 110
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=48.82 E-value=44 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|+.|++..+|+--. ...++.+.+||||.|=-|+.
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND---------------EEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 688999999999999997321 45688899999999988864
No 111
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.77 E-value=46 Score=29.67 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=-|+.
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE---------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 588999999999999997421 45677888999999988875
No 112
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=48.46 E-value=29 Score=36.52 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=54.9
Q ss_pred cchhcCccEEEEcccccCCCCCCC-----CCcccCCCCC--CCcHHHHHHHHHHcCCEEEEEecCCC-------------
Q 038817 5 GLAALGYQYINLDDCWAELNRDST-----GNFVPKASAF--PAGIKALADYVHAKGLKLGIYSDAGT------------- 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~-----G~~~~~~~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~------------- 64 (303)
.|+++||+.|.|=--+......+. +...+++ +| |+.||.|++.+|++|+++=+=+-+..
T Consensus 259 ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fD 337 (758)
T PLN02447 259 RIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFD 337 (758)
T ss_pred HHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccC
Confidence 468999999988322221111112 2334443 55 55799999999999999764332210
Q ss_pred cc--------cCC------------CCCCccchHHHHHHHH-HHcCccEEEeecCC
Q 038817 65 QT--------CSK------------TMPGSLGHEEQDAKTF-ASWGVDYLKYDNCF 99 (303)
Q Consensus 65 ~~--------c~~------------~~pg~~~~~~~~~~~~-~~wGvdylK~D~~~ 99 (303)
.+ +.+ .+|.++.++...++.+ .+.|||.+.+|.+.
T Consensus 338 g~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 338 GTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred CCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 00 000 0122344555556664 57999999999864
No 113
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=48.45 E-value=18 Score=33.66 Aligned_cols=178 Identities=19% Similarity=0.313 Sum_probs=96.0
Q ss_pred CCCCCCCcHHHHH-----HHHHHcCC---EEEEEecCCCc------------ccCC--CCCCcc----chHHHHHHHHHH
Q 038817 34 KASAFPAGIKALA-----DYVHAKGL---KLGIYSDAGTQ------------TCSK--TMPGSL----GHEEQDAKTFAS 87 (303)
Q Consensus 34 ~~~~FP~G~~~l~-----~~ih~~Gl---k~Giy~~pg~~------------~c~~--~~pg~~----~~~~~~~~~~~~ 87 (303)
+.++-|. +|.|+ .-..+.|+ ++||-.+.-.- ..++ -.|||+ +|=...-.++.+
T Consensus 58 ~~~rI~~-~K~L~~~A~~~va~~~G~~~g~~GiL~D~~~GqdaL~~atg~G~WIgRPvE~pgSrPL~fE~G~digs~L~~ 136 (311)
T PF09863_consen 58 DLARIPA-LKQLILQAAQQVAAEAGLPQGGAGILCDGRYGQDALNAATGRGWWIGRPVELPGSRPLRFEHGRDIGSQLIE 136 (311)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHhcCCCCCCeeEEeecchhHHHHHHHhcCCCeEEeecccCCCCceeeecCcCHHHHHHh
Confidence 3344444 55553 33444688 79988763210 0000 147764 444556667999
Q ss_pred cCcc-EEEeecCCCCCCC------ccchhHHHHHHHHhcCCCeEEEeccCCCCCcCc---cc--------c-cccCeEee
Q 038817 88 WGVD-YLKYDNCFNTGTS------PKERYPIMSKALLNSGRPIFFSLCEWGREDPAT---WA--------P-KIGNSWRT 148 (303)
Q Consensus 88 wGvd-ylK~D~~~~~~~~------~~~~y~~~~~al~~~g~~i~~~~c~~g~~~~~~---~~--------~-~~~~~~Ri 148 (303)
|-.+ ++|.=.-|++..+ ..+......+|..++|+.+++++-. +...|-. .. . -+.+-|-+
T Consensus 137 WP~ehvVKcLvfyHPdD~~~lr~~Qe~~l~~l~~ac~~sg~ElLLEvI~-p~~~~~~~~~~~~ai~r~Y~lGI~PDWWKL 215 (311)
T PF09863_consen 137 WPQEHVVKCLVFYHPDDDPELRLEQEAQLRRLYDACRRSGHELLLEVIP-PKDMPVDDDTYARAIERFYNLGIKPDWWKL 215 (311)
T ss_pred CCcccEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcceeEEEec-CCCCCCChHHHHHHHHHHHHcCCCCCeecc
Confidence 9887 8998766665433 2444556778888999999999743 2221110 00 0 01122222
Q ss_pred cCCCCCchhhHHHHHHhhcccccccCCCCcCCCcc---eecCCCCCChHHHHHHHHHHHHhcCCeeeccCCCC-C-CHHH
Q 038817 149 TGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDM---LEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRA-M-DKIT 223 (303)
Q Consensus 149 s~D~~~~w~~~~~~~~~~~~~~~~~~~~~~nDpD~---l~vg~~~lt~~E~r~~~~~wa~~~spL~~g~dl~~-l-~~~~ 223 (303)
..=....|..+...+. -+||.| +++ ||+..|....-++-+.+++|+.-|--+-. + -+..
T Consensus 216 ep~s~~~W~~i~~~I~-------------~~Dp~crGvVvL---GLdAP~e~L~~~F~~Aa~~p~vkGFAVGRTIF~~~s 279 (311)
T PF09863_consen 216 EPLSAAAWQAIEALIE-------------ERDPYCRGVVVL---GLDAPEEELAAGFAAAAGSPLVKGFAVGRTIFGEPS 279 (311)
T ss_pred CCCCHHHHHHHHHHHH-------------HhCCCceeEEEe---cCCCCHHHHHHHHHHhhCCCceeeeeechhhhHHHH
Confidence 2111123333333332 256655 233 56655666666777788999998877732 1 3444
Q ss_pred HHhhhc
Q 038817 224 FNILSN 229 (303)
Q Consensus 224 ~~~l~N 229 (303)
.++|.+
T Consensus 280 r~Wl~g 285 (311)
T PF09863_consen 280 RAWLAG 285 (311)
T ss_pred HHHHcC
Confidence 455543
No 114
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.20 E-value=46 Score=29.15 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
..+++.+|++|++..+|+-.. ...++.+.++|||.|=-|+.
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~---------------~~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDD---------------AEDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCCC
Confidence 688999999999999997421 34577888999999988864
No 115
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=47.32 E-value=50 Score=28.66 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=-|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND---------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCC
Confidence 579999999999999995321 3467788899999998775
No 116
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.20 E-value=1.1e+02 Score=26.14 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKT 84 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~ 84 (303)
.+|..|++++.|-. .+. .|. .|+ . +..-.+.+++.||+.|+|.-+-...|.. ..+-.+..++.
T Consensus 17 ~vk~~g~~fv~ika-teg-----~~~--~D~----~-f~~n~~~A~~aGl~~G~Yhf~~~~~~~~----~~~Qa~~f~~~ 79 (196)
T cd06416 17 CLKNNGYSFAIIRA-YRS-----NGS--FDP----N-SVTNIKNARAAGLSTDVYFFPCINCCGS----AAGQVQTFLQY 79 (196)
T ss_pred HHHhCCceEEEEEE-Ecc-----CCc--cCh----H-HHHHHHHHHHcCCccceEEEecCCCCCC----HHHHHHHHHHH
Confidence 46778999999853 221 122 343 2 6777889999999999998753211111 12223444555
Q ss_pred HHHcCcc--EEEeecCCCCC---CC---ccchhHHHHHHHHhcCC-CeEEE
Q 038817 85 FASWGVD--YLKYDNCFNTG---TS---PKERYPIMSKALLNSGR-PIFFS 126 (303)
Q Consensus 85 ~~~wGvd--ylK~D~~~~~~---~~---~~~~y~~~~~al~~~g~-~i~~~ 126 (303)
+...+.+ .|-+|.=...+ .. .......+.+.+++.|. +++|+
T Consensus 80 ~~~~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 80 LKANGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred HHhCCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 6666654 34466432111 11 12233456666776675 56665
No 117
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=47.18 E-value=14 Score=28.99 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=31.2
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEE
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKL 56 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~ 56 (303)
+++.++++|++-+++|-|= -+|-+-+++|++-+++.||+|
T Consensus 70 la~ra~~~gi~~vvfDrgg---------------~~yhGrV~a~a~~are~GL~f 109 (109)
T CHL00139 70 LAKKSLKKGITKVVFDRGG---------------KLYHGRIKALAEAAREAGLQF 109 (109)
T ss_pred HHHHHHHCCCCEEEEcCCC---------------CccchHHHHHHHHHHHhCCCC
Confidence 4667889999999998541 134445999999999999986
No 118
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=47.04 E-value=34 Score=34.58 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=32.8
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCc-----ccCCCCCC--CcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNF-----VPKASAFP--AGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~-----~~~~~~FP--~G~~~l~~~ih~~Glk~Gi 58 (303)
-|+++|++.|.|=--+.....+ .|.. .+|+ +|- ..++.|++.+|++|||+-+
T Consensus 41 yl~~lGv~~i~l~P~~~~~~~~-~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 41 YLQKLGVDAIWLTPFYVSPQVD-NGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred HHHhCCCCEEEECCCCCCCCCC-CCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999883333221111 2332 2333 442 2589999999999999764
No 119
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=46.20 E-value=80 Score=28.34 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHH----H
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKAL----L 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al----~ 117 (303)
++.+...+|++|.++.| +-| .++ -.....+++.-+|+||+|..+-...........+.++| +
T Consensus 138 ~~~~l~~L~~~G~~ial--DDF--GtG----------~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~ 203 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DDF--GTG----------YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAH 203 (256)
T ss_pred HHHHHHHHHHCCCeEEE--ECC--CCC----------HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHH
Confidence 67788888888865544 433 111 22356678899999999987654333222223344443 3
Q ss_pred hcCCCeEEEec
Q 038817 118 NSGRPIFFSLC 128 (303)
Q Consensus 118 ~~g~~i~~~~c 128 (303)
+.|-.++.+-+
T Consensus 204 ~l~~~vvaEGV 214 (256)
T COG2200 204 KLGLTVVAEGV 214 (256)
T ss_pred HCCCEEEEeec
Confidence 55666666543
No 120
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=45.94 E-value=87 Score=34.58 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHcCCEEEEEec--------------CCC------------cccCC----CCCCccchHHHHHHHH-HHcC
Q 038817 41 GIKALADYVHAKGLKLGIYSD--------------AGT------------QTCSK----TMPGSLGHEEQDAKTF-ASWG 89 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~--------------pg~------------~~c~~----~~pg~~~~~~~~~~~~-~~wG 89 (303)
.||.|++.+|++||++=+=+- |+. ..|.. .+|.++.++...++.+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999753211 110 01111 1344455665556665 4799
Q ss_pred ccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEE
Q 038817 90 VDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFF 125 (303)
Q Consensus 90 vdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~ 125 (303)
||.+.+|.+..- ..+....++.++.+..+.+++
T Consensus 636 VDGFRfDl~g~~---d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 636 VDGFRFDMMGDH---DAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CcEEEEeccccC---CHHHHHHHHHHHHHhCcCEEE
Confidence 999999987531 223345566666666666554
No 121
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=45.72 E-value=72 Score=26.79 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=54.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKT 84 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~ 84 (303)
.+++.|+++|+|=. . .|....|+ -.+.-.+.+++.|+++|.|.-+-. |.. ...-.+..++.
T Consensus 16 ~~~~~g~~fviik~-t-------~G~~~~D~-----~~~~~~~~a~~aGl~~G~Yhy~~~--~~~----a~~qa~~fi~~ 76 (186)
T cd00599 16 AVKAAGIDFVFIKA-T-------EGTTYVDP-----KFATNRARARAAGLLVGAYHFARP--CAN----AEAQADNFVNT 76 (186)
T ss_pred HHHhCCCcEEEEEE-e-------CCCCccCh-----HHHHHHHHHHHCCCceEEEEEecC--CCC----HHHHHHHHHHH
Confidence 35667888777722 1 23333343 256777788899999999986532 211 11122233333
Q ss_pred HHHc-CccEEEeecCCCCCC----CccchhHHHHHHHHhcC--CCeEEEe
Q 038817 85 FASW-GVDYLKYDNCFNTGT----SPKERYPIMSKALLNSG--RPIFFSL 127 (303)
Q Consensus 85 ~~~w-GvdylK~D~~~~~~~----~~~~~y~~~~~al~~~g--~~i~~~~ 127 (303)
+... +--++=+|.=..... ...+...++.+.|++.| ++++|+.
T Consensus 77 ~~~~~~~~~~~lDvE~~~~~~~~~~~~~~~~~f~~~~~~~gg~~~~iY~~ 126 (186)
T cd00599 77 VPRDPGSLPLVLDVEDTGGGCSAAALAAWLNAFLNEVEALTGKKPIIYTS 126 (186)
T ss_pred ccCcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCCceEEEEc
Confidence 3333 333444454222111 12233346677777655 6777763
No 122
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=45.38 E-value=31 Score=32.90 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=57.6
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCCccchHHHHH
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPGSLGHEEQDA 82 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg~~~~~~~~~ 82 (303)
+.+.++|-+.|+|.|.|..... ....+.=.+|- ++.+.+.+++.+-. +=|+ .|.+. ....
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~----~~~~~~f~~~~-~~~i~~~vk~~~~~~pii~------f~~ga--------~~~l 256 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLS----MIDYDEFVLPY-MKRIVREVKEVKGGVPVIH------FCKGA--------GHLL 256 (352)
T ss_pred HHHHHhCCCEEEeeccccccCC----cccHHHHhhhH-HHHHHHHHHHhCCCCcEEE------ECCCc--------HHHH
Confidence 4567899999999999975321 11122223354 89999999987764 3343 34431 2346
Q ss_pred HHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCC
Q 038817 83 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRP 122 (303)
Q Consensus 83 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~ 122 (303)
..++++|+|.+-+|.-.. +.+|-+..+..
T Consensus 257 ~~m~~~g~d~l~vdw~v~-----------l~~a~~~~~~~ 285 (352)
T COG0407 257 EDMAKTGFDVLGVDWRVD-----------LKEAKKRLGDK 285 (352)
T ss_pred HHHHhcCCcEEeeccccC-----------HHHHHHHhCCC
Confidence 678899999999887643 55555555554
No 123
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.37 E-value=50 Score=29.34 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
..+++.+|++|++..+|+-.. ...++.+.++|||.|=-|+.
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~---------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND---------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC---------------HHHHHHHHHcCCCEEEcCCC
Confidence 578999999999999987411 34677888999999988864
No 124
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=45.16 E-value=63 Score=30.23 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=52.4
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCc--ccCCCCCCCcHHHHHHHHHHcCCEEEE-------EecCCCcccCCCCCC--
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNF--VPKASAFPAGIKALADYVHAKGLKLGI-------YSDAGTQTCSKTMPG-- 73 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~--~~~~~~FP~G~~~l~~~ih~~Glk~Gi-------y~~pg~~~c~~~~pg-- 73 (303)
-||.+|+.||-| --|-.. +|++|.- --+.+. .++-+++++.+.+|||.-+ |.+|+-+ ..|-
T Consensus 71 iLK~~GvNyvRl-RvwndP-~dsngn~yggGnnD~--~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ----~kPkaW 142 (403)
T COG3867 71 ILKNHGVNYVRL-RVWNDP-YDSNGNGYGGGNNDL--KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ----KKPKAW 142 (403)
T ss_pred HHHHcCcCeEEE-EEecCC-ccCCCCccCCCcchH--HHHHHHHHHHHhcCcEEEeeccchhhccChhhc----CCcHHh
Confidence 488999999998 458765 5554332 111110 1367899999999999875 2234322 1232
Q ss_pred -----------ccchHHHHHHHHHHcCcc--EEEeec
Q 038817 74 -----------SLGHEEQDAKTFASWGVD--YLKYDN 97 (303)
Q Consensus 74 -----------~~~~~~~~~~~~~~wGvd--ylK~D~ 97 (303)
.++|-+...++++.-|++ ++.+-.
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGN 179 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGN 179 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEecc
Confidence 234556778888888875 444443
No 125
>PLN02361 alpha-amylase
Probab=45.10 E-value=1.1e+02 Score=29.81 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=32.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccC----CCCCCC--cHHHHHHHHHHcCCEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPK----ASAFPA--GIKALADYVHAKGLKLG 57 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~----~~~FP~--G~~~l~~~ih~~Glk~G 57 (303)
-|+++|++.|-|=--.... ...|.+..| ..+|-+ .|+.|++.+|++|+|+=
T Consensus 37 ~l~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi 93 (401)
T PLN02361 37 DLAKSGFTSAWLPPPSQSL--APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAM 93 (401)
T ss_pred HHHHcCCCEEEeCCCCcCC--CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 4788999988773333321 123443332 135542 48999999999999964
No 126
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=44.89 E-value=51 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHH-cCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFAS-WGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~-wGvdylK~D~ 97 (303)
+.+++.+|+.|++..+|+--. ...++.+.+ |||| |=-|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNT---------------PTEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHHhCCC-eecCC
Confidence 578999999999999997532 346778888 9999 75654
No 127
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=44.50 E-value=66 Score=24.27 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=33.7
Q ss_pred chhcCccEEEEcccccCCCCCCCCC-cccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCc
Q 038817 6 LAALGYQYINLDDCWAELNRDSTGN-FVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQ 65 (303)
Q Consensus 6 l~~~Gy~~v~iDdgW~~~~~d~~G~-~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~ 65 (303)
|+.+|.+++.+-+.=.. ..+. -.|+|.. .-+..+.+.+++.|..+|+-++|-..
T Consensus 41 l~~lg~~~~~~n~~~d~----~f~~~~~p~p~~--~~l~~~~~~v~~~~ad~g~~~DgDaD 95 (104)
T PF02879_consen 41 LERLGCDVIELNCDPDP----DFPNQHAPNPEE--ESLQRLIKIVRESGADLGIAFDGDAD 95 (104)
T ss_dssp HHHTTCEEEEESSS-ST----TGTTTSTSSTST--TTTHHHHHHHHHSTTSEEEEE-TTSS
T ss_pred HHHcCCcEEEEeccccc----cccccccccccc--chhHHHHHHhhccCceEEEEECCcCc
Confidence 55666666665331111 0122 3445544 34999999999999999999998643
No 128
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=44.20 E-value=53 Score=29.85 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|++|++...|+-.- .. ...++.+.++|||.|=-|+.
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~----n~---------~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLN----ND---------PENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCcc----CC---------HHHHHHHHHcCCCEEEECCH
Confidence 578899999999999987410 00 34678889999999988865
No 129
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=43.95 E-value=57 Score=27.40 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCCCEEEEEEeCCCCceEEEEEcccccc
Q 038817 261 SGNRVAVVLWNRGSSKATVTANWSDIGL 288 (303)
Q Consensus 261 ~~g~~~va~fN~~~~~~~~~~~~~~lGl 288 (303)
.+++.+|.++|++.++++++|+++.++.
T Consensus 102 ~~~~l~v~vVN~~~~~~~v~l~l~g~~~ 129 (177)
T PF06964_consen 102 DGGELYVKVVNRSSEPQTVTLNLQGFSP 129 (177)
T ss_dssp TTTEEEEEEEE-SSSBEEEEEEETTSTS
T ss_pred CCCEEEEEEEECCCCCEEEEEEEcCCCC
Confidence 3447999999998889999999987643
No 130
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.84 E-value=2.3e+02 Score=26.12 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=55.0
Q ss_pred cccchhcCccEEEEccc--cc---------CCCCCCCCCcccCCCCCCCcHHHHHHHHHHc---CCEEEEEecCCCcccC
Q 038817 3 TSGLAALGYQYINLDDC--WA---------ELNRDSTGNFVPKASAFPAGIKALADYVHAK---GLKLGIYSDAGTQTCS 68 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdg--W~---------~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~---Glk~Giy~~pg~~~c~ 68 (303)
++.++++||+-|.|-.+ +. ....|++|--.-+..+| +..+++.|++. ++.+|+=+.+...
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~g~d~~i~vris~~~~--- 220 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAVGPDFPVGVRLSADDF--- 220 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHcCCCceEEEEechhcc---
Confidence 34567899999999764 31 11234554433344455 56778888875 5667776665421
Q ss_pred CCCCC--ccchHHHHHHHHHHcCccEEEeecCC
Q 038817 69 KTMPG--SLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 69 ~~~pg--~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
.++ +.+-....++.+.+.|+|||.+-.-.
T Consensus 221 --~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 221 --VPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred --CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 122 22333566788999999999986543
No 131
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=43.63 E-value=53 Score=29.41 Aligned_cols=39 Identities=8% Similarity=-0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEee
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D 96 (303)
+.+++.+|+.|++..+|+--. ...++.+.++|||.|=-|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~---------------~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNE---------------PWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCC---------------HHHHHHHHHcCCCEEecC
Confidence 578999999999999987532 346788899999998654
No 132
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=43.20 E-value=55 Score=29.17 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
+..+.++||+.|+|+||=+.|.+
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T 119 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPET 119 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 67788999999999999999986
No 133
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=43.04 E-value=36 Score=31.76 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=50.3
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCC-CCC--CCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKA-SAF--PAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~-~~F--P~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
+.+.++|.+.|+++|.|... ..+.|.. .+| |. ++.+.+.||+.|-.+++++ |+.+ ..
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~-----~~lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~------CG~~--------~~ 246 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASS-----DLISPETYKEFGLPY-QKRLFAYIKEIGGITVLHI------CGFT--------QP 246 (340)
T ss_pred HHHHHcCCCEEEecCCccCc-----cccCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEE------CCCc--------hh
Confidence 34678999999999988642 1222210 112 44 8999999999887777654 4321 23
Q ss_pred HHHHHHHcCccEEEeecCC
Q 038817 81 DAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~ 99 (303)
....+++.|+|-+-+|...
T Consensus 247 ~~~~l~~~g~d~ls~d~~~ 265 (340)
T TIGR01463 247 ILRDIANNGCFGFSVDMKP 265 (340)
T ss_pred hHHHHHHhCCCEEeecCCC
Confidence 4666788899988888764
No 134
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=43.00 E-value=57 Score=30.52 Aligned_cols=42 Identities=10% Similarity=-0.041 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|+.|++..+|+--. ...++.+.+||||.|=-|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd---------------~~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINE---------------PWLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCC---------------HHHHHHHHhCCcCEEEeCCHH
Confidence 678899999999998886531 456788999999999999864
No 135
>PRK06769 hypothetical protein; Validated
Probab=42.26 E-value=62 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 36 SAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 36 ~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.-|| |++.+.++||++|.+.+|=++-
T Consensus 28 ~~~p-gv~e~L~~Lk~~G~~l~I~Tn~ 53 (173)
T PRK06769 28 TLFP-FTKASLQKLKANHIKIFSFTNQ 53 (173)
T ss_pred EECC-CHHHHHHHHHHCCCEEEEEECC
Confidence 3466 5999999999999999998763
No 136
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.01 E-value=65 Score=28.56 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++++|+.|+++.+|+-- . ...++.+.++|||.|=-|+.
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN------~---------~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVN------D---------PAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecC------C---------HHHHHHHHhcCCCEEEcCCH
Confidence 68999999999999999832 1 36778899999999988864
No 137
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=41.91 E-value=57 Score=30.49 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+++.+|+.|++..+|+--. ...++.+.++|||.|=-|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNE---------------PWLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCC---------------HHHHHHHHhcCCCEEEcCCH
Confidence 678999999999999987531 45788999999999998875
No 138
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=41.85 E-value=1.8e+02 Score=27.68 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCC----ccchHHHHHHHHHHcCccEEEeecCCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPG----SLGHEEQDAKTFASWGVDYLKYDNCFN 100 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg----~~~~~~~~~~~~~~wGvdylK~D~~~~ 100 (303)
+..+++.+|+.||-.-+|.-|--..-. .++ ....+...++.=++.|.|+||..++..
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~--~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFK--KDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccC--CcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 577888999999988887765321111 122 123455556667899999999999864
No 139
>PLN03244 alpha-amylase; Provisional
Probab=41.82 E-value=34 Score=36.16 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHcCCEEEEEecCC-----C----------ccc------CC------------CCCCccchHHHHHHH-
Q 038817 39 PAGIKALADYVHAKGLKLGIYSDAG-----T----------QTC------SK------------TMPGSLGHEEQDAKT- 84 (303)
Q Consensus 39 P~G~~~l~~~ih~~Glk~Giy~~pg-----~----------~~c------~~------------~~pg~~~~~~~~~~~- 84 (303)
|+.||.|++.+|++|+++=|=+-+. . ..+ .+ .+|.++.++-..++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5679999999999999876432221 0 000 00 123345566556666
Q ss_pred HHHcCccEEEeecCC
Q 038817 85 FASWGVDYLKYDNCF 99 (303)
Q Consensus 85 ~~~wGvdylK~D~~~ 99 (303)
+.+.+||.+.+|.+.
T Consensus 520 leEyhIDGFRfDaVt 534 (872)
T PLN03244 520 ITEYQIDGFQFHSLA 534 (872)
T ss_pred HHHhCcCcceeecch
Confidence 469999999999873
No 140
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=41.70 E-value=49 Score=30.07 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 44 ALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 44 ~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
..++.+|+.|++++...-.|. ..+.+.....++.+.+.|++.+++-..
T Consensus 162 ~ai~~l~~~Gi~v~~~~i~Gl-------~et~~d~~~~~~~l~~l~~~~i~l~~l 209 (296)
T TIGR00433 162 DTLENAKKAGLKVCSGGIFGL-------GETVEDRIGLALALANLPPESVPINFL 209 (296)
T ss_pred HHHHHHHHcCCEEEEeEEEeC-------CCCHHHHHHHHHHHHhCCCCEEEeeee
Confidence 345566666666665544431 113344444555556666666655544
No 141
>PRK10481 hypothetical protein; Provisional
Probab=41.67 E-value=2.5e+02 Score=24.93 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=62.3
Q ss_pred cchhcCccEEEEcccccC-CCCCCCCCcccCCCCCCC-cHHHHHHHHHHcCCEEEEEecCC--------------Cc---
Q 038817 5 GLAALGYQYINLDDCWAE-LNRDSTGNFVPKASAFPA-GIKALADYVHAKGLKLGIYSDAG--------------TQ--- 65 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~-~~~d~~G~~~~~~~~FP~-G~~~l~~~ih~~Glk~Giy~~pg--------------~~--- 65 (303)
.|.+.||+.|+| -|... ..-...+.+. .+|. ++.+++..+.. |-++|+=+--- ..
T Consensus 85 ~l~~~g~d~ivl-~Ctgdfp~l~a~r~~l----~~P~~~i~~lv~Al~~-g~riGVitP~~~qi~~~~~kw~~~G~~v~~ 158 (224)
T PRK10481 85 VLDNQGYDVILL-LCTGEFPSLTARNAIL----LEPSRILPPLVAAIVG-GHQVGVIVPVEEQLAQQAQKWQVLQKPPVF 158 (224)
T ss_pred HHHhCCCCEEEE-EecCCCCCccccCccc----cCchhhHHHHHHHhcC-CCeEEEEEeCHHHHHHHHHHHHhcCCceeE
Confidence 467789999999 44433 1111112222 2343 67777777766 57999865311 00
Q ss_pred ccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH-hcCCCeEEE
Q 038817 66 TCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL-NSGRPIFFS 126 (303)
Q Consensus 66 ~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~-~~g~~i~~~ 126 (303)
.|...+-++...+...++.+.+.|.|-|=+|+.+.. ..+.+.++ .+|.|++.+
T Consensus 159 ~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~--------~~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 159 ALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYH--------QRHRDLLQKALDVPVLLS 212 (224)
T ss_pred eecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcC--------HHHHHHHHHHHCcCEEcH
Confidence 111111133334455666677888998888877642 25666665 578888765
No 142
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=40.56 E-value=72 Score=26.38 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
..+++.+|+.|+++.+|+-.. ...++.+.++|||.|=-|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~---------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND---------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC---------------HHHHHHHHHCCCCEEecCC
Confidence 788999999999999987421 5567788999999987664
No 143
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=39.97 E-value=59 Score=28.85 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCCCcHHHHHHHHHHcCCEEEEEecCCC
Q 038817 36 SAFPAGIKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 36 ~~FP~G~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
+.-|+ +..+.++||+.|.|+||=+.|.+
T Consensus 93 E~~~~-~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 93 EATEH-IHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred ccCcC-HHHHHHHHHHcCCeEEEEECCCC
Confidence 33445 89999999999999999999986
No 144
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.57 E-value=2.4e+02 Score=25.81 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
++.++++.+++|+++-++.+-+ .|+- .-+.+++...++.+.+.|++.|- .|...+.-.......+.+++.+.-+
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d~--~~~~--r~~~~~~~~~~~~~~~~G~~~i~--l~DT~G~~~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLEDW--SNGM--RDSPDYVFQLVDFLSDLPIKRIM--LPDTLGILSPFETYTYISDMVKRYP 190 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEeC--CCCC--cCCHHHHHHHHHHHHHcCCCEEE--ecCCCCCCCHHHHHHHHHHHHhhCC
Confidence 5777999999999988887753 4531 22457888889999999999644 3444333333334444455543323
Q ss_pred CeEEE
Q 038817 122 PIFFS 126 (303)
Q Consensus 122 ~i~~~ 126 (303)
.+-++
T Consensus 191 ~~~i~ 195 (280)
T cd07945 191 NLHFD 195 (280)
T ss_pred CCeEE
Confidence 34344
No 145
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=39.49 E-value=67 Score=23.71 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCEEEEEEeCCCCce--EEEEEcc
Q 038817 252 DLEVWAGPLSGNRVAVVLWNRGSSKA--TVTANWS 284 (303)
Q Consensus 252 ~~~vw~~~l~~g~~~va~fN~~~~~~--~~~~~~~ 284 (303)
..-+|.|..+++..+|+++|++++.. ++.+.+.
T Consensus 10 ~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p 44 (95)
T PF02806_consen 10 NVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVP 44 (95)
T ss_dssp SEEEEEETTTETTEEEEEEESSSS-EEEEEEECSS
T ss_pred CEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCC
Confidence 45566776433338999999988733 3444443
No 146
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=38.97 E-value=83 Score=29.06 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCC-ccchHHHHHHHHHHcCccEEEeecC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPG-SLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+...++.+++.|+++..++..| .|| +.++....++.+.+.+++.||+=.+
T Consensus 165 ~~~ai~~l~~~gi~v~~~lI~G-------lPget~e~~~~t~~~l~~l~~d~i~i~~l 215 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCSHVILG-------LPGEDREEMMETAKIVSLLDVDGIKIHPL 215 (302)
T ss_pred HHHHHHHHHHcCCEEEEeEEEC-------CCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5667777888888887777665 344 4566677788888889998888444
No 147
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.97 E-value=1.1e+02 Score=26.32 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHH----HHHHH
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIM----SKALL 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~----~~al~ 117 (303)
+....+.+++.|.++.| +-+ | .-...+..+....+||||+|...............+ ....+
T Consensus 135 ~~~~i~~l~~~G~~ial--ddf---------g---~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 200 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DDF---------G---TGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ 200 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eCC---------C---CcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH
Confidence 44667778888877655 211 1 112235677888999999998543222222222333 33333
Q ss_pred hcCCCeEEE
Q 038817 118 NSGRPIFFS 126 (303)
Q Consensus 118 ~~g~~i~~~ 126 (303)
..|-.++.+
T Consensus 201 ~~~~~via~ 209 (241)
T smart00052 201 KLGLQVVAE 209 (241)
T ss_pred HCCCeEEEe
Confidence 556666555
No 148
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.93 E-value=2.2e+02 Score=25.85 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
++.++++++++|+++-+....+... ..-..+++...++.+.+.|++.|-+ +...+.-.......+.+++++.-+
T Consensus 121 ~~~~i~~ak~~G~~v~~~~~~~~d~----~~~~~~~~~~~~~~~~~~g~~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 121 IRDSVAYLKSHGREVIFDAEHFFDG----YKANPEYALATLKAAAEAGADWLVL--CDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHHHcCCeEEEeEEecccc----CCCCHHHHHHHHHHHHhCCCCEEEE--ecCCCCCCHHHHHHHHHHHHHhCC
Confidence 5788999999999876654433111 1124667788888889999997753 333333333444455555543323
Q ss_pred CeEEE
Q 038817 122 PIFFS 126 (303)
Q Consensus 122 ~i~~~ 126 (303)
++-++
T Consensus 195 ~~~l~ 199 (273)
T cd07941 195 GVPLG 199 (273)
T ss_pred CCeeE
Confidence 34444
No 149
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=38.61 E-value=89 Score=29.02 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=52.2
Q ss_pred ccchhcCccEEEEccc-ccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc--CCEEEEEecCCCcccCCCCCCccchHHH
Q 038817 4 SGLAALGYQYINLDDC-WAELNRDSTGNFVPKASAFPAGIKALADYVHAK--GLKLGIYSDAGTQTCSKTMPGSLGHEEQ 80 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdg-W~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~--Glk~Giy~~pg~~~c~~~~pg~~~~~~~ 80 (303)
+.|.++|..+|+||+- |... ... . ... ..-..++.+.+.++++ +++.++++..|...- ++- +.+-+..
T Consensus 162 ~~l~~aG~~~iQiDEP~l~~~-~~~--~--~~~-~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~--~~~-~~~~y~~ 232 (332)
T cd03311 162 RDLYDAGCRYIQIDEPALAEG-LPL--E--PDD-LAADYLKWANEALADRPDDTQIHTHICYGNFRS--TWA-AEGGYEP 232 (332)
T ss_pred HHHHHcCCCEEEeecchhhcc-CCc--c--cHH-HHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcc--ccc-ccCcHHH
Confidence 4578899999999996 4332 111 1 000 0011256777777752 578888776553211 111 1222355
Q ss_pred HHHHHHHcCccEEEeecCCC
Q 038817 81 DAKTFASWGVDYLKYDNCFN 100 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~ 100 (303)
.++.+.+-++|.|-+|+...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 67778788999999999754
No 150
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=38.38 E-value=65 Score=27.66 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHH----H
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKAL----L 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al----~ 117 (303)
++.+..++++.|.+++| +-+ | .-...++.+.++.+||||+|.-..........+..+.+.+ .
T Consensus 134 ~~~~~~~l~~~G~~l~l--d~~---------g---~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 134 ALATLRRLRALGVRIAL--DDF---------G---TGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHCCCeEEE--eCC---------C---CcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 78888899999998877 211 1 1133457788999999999975432222222233333333 3
Q ss_pred hcCCCeEEE
Q 038817 118 NSGRPIFFS 126 (303)
Q Consensus 118 ~~g~~i~~~ 126 (303)
..|-.++.+
T Consensus 200 ~~~~~via~ 208 (240)
T cd01948 200 SLGLKVVAE 208 (240)
T ss_pred HCCCeEEEE
Confidence 455566555
No 151
>PRK07094 biotin synthase; Provisional
Probab=37.78 E-value=34 Score=31.73 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCccEEEeecC
Q 038817 79 EQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 79 ~~~~~~~~~wGvdylK~D~~ 98 (303)
...++.+.+-|+. +..+++
T Consensus 168 ~~~i~~l~~~Gi~-v~~~~i 186 (323)
T PRK07094 168 IACLKDLKELGYE-VGSGFM 186 (323)
T ss_pred HHHHHHHHHcCCe-ecceEE
Confidence 3344455555553 444544
No 152
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=37.66 E-value=18 Score=39.33 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=37.3
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEec
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
+.+-|.++||+||.++|.=+.. +++-+. .-|- |+.|.+-.+++|+.||+=++
T Consensus 252 ~r~~~~~~g~~~~~~~~~~f~~------dl~~~~-~~~~-~~~l~~~~~~~~~~fgvk~~ 303 (1012)
T TIGR03315 252 VRDTMDEMGFDYIVLKEESFSH------DLQYED-AVAM-LQRLQLLAKEKGLGFGVKLT 303 (1012)
T ss_pred HHHHHHhcCCceEecchhhccc------ccchhH-HHHH-HHHHHHHHHHcCCeeeEEEe
Confidence 4556788999999999866653 333221 1233 67888888999999998875
No 153
>PRK13561 putative diguanylate cyclase; Provisional
Probab=36.82 E-value=49 Score=33.78 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCC
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNT 101 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 101 (303)
....+.+.++++|++++| +-| ++...+..| ...+.+..+||||+|..+-.
T Consensus 535 ~~~~~~~~l~~~G~~i~l--ddf-----G~g~ssl~~----L~~l~~l~~d~lKiD~s~i~ 584 (651)
T PRK13561 535 AAVAILRPLRNAGVRVAL--DDF-----GMGYAGLRQ----LQHMKSLPIDVLKIDKMFVD 584 (651)
T ss_pred HHHHHHHHHHHCCCEEEE--ECC-----CCCcccHHH----HhhcCCCCCcEEEECHHHHh
Confidence 467888999999999988 211 111223333 23345679999999986543
No 154
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=36.70 E-value=50 Score=35.33 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=35.9
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCC----CCC--CcHHHHHHHHHHcCCEEEEEecC
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKAS----AFP--AGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~----~FP--~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
-|+++|++.|.+=--+........|..+.|.. .|. ++++.|++.+|++||++=+=+-|
T Consensus 28 YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 28 YFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 47889999998844444321222344433322 332 36999999999999986553333
No 155
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=36.68 E-value=2.6e+02 Score=25.77 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCCcccCCCCCC-ccchHHHHHHHHHHcCccEEEeecCCCCCCCc---cchhHHHHHHH
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGTQTCSKTMPG-SLGHEEQDAKTFASWGVDYLKYDNCFNTGTSP---KERYPIMSKAL 116 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~---~~~y~~~~~al 116 (303)
.+..-+..|+++|.|+-|=+--.....-...+. .....+...+.+..+|+|.|-+|.=+.. ... .++.....+.|
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-~~d~~~~~~~~~al~~L 133 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-LTDTAAIDRRAQALALL 133 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-cccchhHHHHHHHHHHH
Confidence 366778899999998877443211000000111 2233445556678999999999876643 222 23444444555
Q ss_pred HhcCCCeEEEec
Q 038817 117 LNSGRPIFFSLC 128 (303)
Q Consensus 117 ~~~g~~i~~~~c 128 (303)
++..+++.+++.
T Consensus 134 q~~~p~l~vs~T 145 (294)
T cd06543 134 QKEYPDLKISFT 145 (294)
T ss_pred HHHCCCcEEEEe
Confidence 555566666643
No 156
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=36.61 E-value=41 Score=29.70 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 36 SAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 36 ~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.-|| |+.++.+++|++|++.+|+++-
T Consensus 95 ~lyp-gv~e~L~~Lk~~G~~l~I~Sn~ 120 (220)
T TIGR01691 95 HLYP-DVPPALEAWLQLGLRLAVYSSG 120 (220)
T ss_pred CcCc-CHHHHHHHHHHCCCEEEEEeCC
Confidence 3576 5999999999999999999874
No 157
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=36.56 E-value=26 Score=27.91 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.3
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEE
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKL 56 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~ 56 (303)
+++.++++|++-+++|-| . .+|-+-++++++-+++.||+|
T Consensus 78 la~ra~~~gi~~vvfDrg--~-------------~~yhGrV~a~a~~are~Gl~f 117 (117)
T PRK05593 78 IAERAKAKGIKQVVFDRG--G-------------YKYHGRVKALADAAREAGLKF 117 (117)
T ss_pred HHHHHHHCCCCEEEEcCC--C-------------CcccHHHHHHHHHHHHhCCCC
Confidence 456678899999999754 1 133334999999999999986
No 158
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.79 E-value=48 Score=28.88 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCEEEEEecCCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGT 64 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~ 64 (303)
+..+.++||++|+|+||-+.|++
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred HHHHHHHHHHhCCCEEEEEECCC
Confidence 78899999999999999999986
No 159
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=35.52 E-value=1.2e+02 Score=27.95 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCEEEEEecCCCcccCCCCCCcc--chHHHHHHHHHHcCccEEEeecCC
Q 038817 44 ALADYVHAKGLKLGIYSDAGTQTCSKTMPGSL--GHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 44 ~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
.+++.+|+.|+++-+|+--.... ..+..+ ...+...+.+.++|||.|=-|+..
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~~~---~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNEFV---SLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCCcc---ccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 79999999999999998532100 011111 223455677889999999998754
No 160
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=35.12 E-value=36 Score=26.78 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=28.6
Q ss_pred CCEEEEEecCCC-cccCCCCCCccchH--HHHHHHHHHcCccEEEeecC
Q 038817 53 GLKLGIYSDAGT-QTCSKTMPGSLGHE--EQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 53 Glk~Giy~~pg~-~~c~~~~pg~~~~~--~~~~~~~~~wGvdylK~D~~ 98 (303)
-|++|+|+.-.. ........-....+ ..+++.+.++|+.+|-+|.-
T Consensus 9 ~L~~GM~V~~~~~~w~~~pfl~~~f~I~s~~~I~~L~~~gi~~V~Id~~ 57 (128)
T PF11871_consen 9 QLKPGMYVSRLDRSWLEHPFLFQGFLIKSQADIEKLRRLGIQEVYIDPD 57 (128)
T ss_pred HCCCCcEEEecCCCccCCCeeeeceeECCHHHHHHHHHCCCcEEEEECC
Confidence 378888887543 11111111112222 56888999999999999964
No 161
>PLN02877 alpha-amylase/limit dextrinase
Probab=35.10 E-value=2.3e+02 Score=30.95 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCEEEEEecC------CC--------------------------cccCC-C---CCCccchHHHHHHHH
Q 038817 42 IKALADYVHAKGLKLGIYSDA------GT--------------------------QTCSK-T---MPGSLGHEEQDAKTF 85 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~p------g~--------------------------~~c~~-~---~pg~~~~~~~~~~~~ 85 (303)
+|.|++.+|++|++.=+=.-. +. .+|.. + +|-++.++-..++.+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999997642110 00 01111 0 112223444445554
Q ss_pred -HHcCccEEEeecCCCCCCCccchhHHHHHHHHhc--------CCCeEEEeccCC
Q 038817 86 -ASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNS--------GRPIFFSLCEWG 131 (303)
Q Consensus 86 -~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~--------g~~i~~~~c~~g 131 (303)
.++|||.+.+|-...- ..+....++.+|++. |+.|++---.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i---~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHL---MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEccccc---cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 4799999999988753 222334555556544 566655323563
No 162
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.00 E-value=98 Score=25.78 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=64.1
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCC--------ccc
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPG--------SLG 76 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg--------~~~ 76 (303)
-++++||+.|-+....... +... +..++.+.+.+.+.|+++.-...+..........+ +..
T Consensus 3 ~~~~~G~~~vE~~~~~~~~-------~~~~----~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQP-------WDEK----DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSH-------HTHH----HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcc-------cccc----hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 3678999999995433321 0000 34589999999999999544333221111100001 134
Q ss_pred hHHHHHHHHHHcCccEEEeecC---CCCCCCccchhHHHHHHH-------HhcCCCeEEEeccC
Q 038817 77 HEEQDAKTFASWGVDYLKYDNC---FNTGTSPKERYPIMSKAL-------LNSGRPIFFSLCEW 130 (303)
Q Consensus 77 ~~~~~~~~~~~wGvdylK~D~~---~~~~~~~~~~y~~~~~al-------~~~g~~i~~~~c~~ 130 (303)
+++..++.-+..|++++.+-.- ........+.+..+.+.| .+.|-.+.++.+.+
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 5566777778999999998844 222222233444333333 34565666776543
No 163
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=34.94 E-value=43 Score=24.48 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.7
Q ss_pred ccEEEEcccccCCCCCCCCCcccCCCCCC-CcHHHHHHHHHHc
Q 038817 11 YQYINLDDCWAELNRDSTGNFVPKASAFP-AGIKALADYVHAK 52 (303)
Q Consensus 11 y~~v~iDdgW~~~~~d~~G~~~~~~~~FP-~G~~~l~~~ih~~ 52 (303)
|..+.||||+-.. .+..|...-|- +-| +| .|.++|+++
T Consensus 5 YqLidI~DG~lsL-M~e~G~~kdDl-~lP~~~--~l~~~I~~~ 43 (75)
T cd04469 5 YRVLDIQDGSIVA-MTETGDVKQGL-PVIDQS--NLWTRLKTA 43 (75)
T ss_pred EEEEEecCCeEEE-EcCCCCcccCc-cCCCcc--hHHHHHHHH
Confidence 6788889998874 55678877775 677 54 666666653
No 164
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.31 E-value=1.2e+02 Score=26.96 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=59.4
Q ss_pred cCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCC-----CCCCcc-chHHHHH
Q 038817 9 LGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSK-----TMPGSL-GHEEQDA 82 (303)
Q Consensus 9 ~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~-----~~pg~~-~~~~~~~ 82 (303)
..++.|++ +|.. .++.|.+...+ -|..+..+.+.+|++|+|.=+=+.-+ .... ..|..+ .+.++.+
T Consensus 21 ~~lThv~~--~f~~--i~~~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~--~~~~~~~~~~~~~~r~~fi~~lv 92 (253)
T cd06545 21 SKLTHINL--AFAN--PDANGTLNANP--VRSELNSVVNAAHAHNVKILISLAGG--SPPEFTAALNDPAKRKALVDKII 92 (253)
T ss_pred hhCCeEEE--EEEE--ECCCCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCC--CCCcchhhhcCHHHHHHHHHHHH
Confidence 34666666 4543 34457665542 12347788899999999976544321 1110 012222 3556778
Q ss_pred HHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH
Q 038817 83 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL 117 (303)
Q Consensus 83 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~ 117 (303)
+.++++|+|.|=+|+-+.... .+.|..+.+.|+
T Consensus 93 ~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr 125 (253)
T cd06545 93 NYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALY 125 (253)
T ss_pred HHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHH
Confidence 888999999999999765422 456666655554
No 165
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=33.63 E-value=94 Score=33.11 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=36.7
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCC----CCC--CcHHHHHHHHHHcCCEEEEEe
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKAS----AFP--AGIKALADYVHAKGLKLGIYS 60 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~----~FP--~G~~~l~~~ih~~Glk~Giy~ 60 (303)
.|+++|++.|.|=--+........|..+.|.. .|- .+++.|++.+|++||++=+=+
T Consensus 24 YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 24 YLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998854444322222455544432 332 368999999999999876543
No 166
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=33.52 E-value=1.1e+02 Score=26.78 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
+.+++.+|++|+++-.|+--. ...++.+.++|||.|=-|+
T Consensus 194 ~~~v~~~~~~gl~v~~wTvn~---------------~~~~~~l~~~gvdgiiTD~ 233 (234)
T cd08570 194 QAFLPELKKNGKKVFVWTVNT---------------EEDMRYAIRLGVDGVITDD 233 (234)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEeCC
Confidence 689999999999998887421 3467888999999987775
No 167
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=33.40 E-value=1.8e+02 Score=22.45 Aligned_cols=36 Identities=25% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCeeEEEEEcC-CCCEEEEEEeCCCCceEEEEEccccc
Q 038817 251 GDLEVWAGPLS-GNRVAVVLWNRGSSKATVTANWSDIG 287 (303)
Q Consensus 251 ~~~~vw~~~l~-~g~~~va~fN~~~~~~~~~~~~~~lG 287 (303)
+..-+..+... ++++||+..|-.++ ++++|+|+-|+
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~-r~i~l~L~FL~ 50 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDA-RTITLPLSFLD 50 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCc-eEEEEECcccC
Confidence 34566677764 45799999998755 44999999885
No 168
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=33.29 E-value=23 Score=38.55 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=37.2
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEec
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
+.+-|.++||+||.++|.=+.. +++-+. .-|- |+.|.+-.+++|+.||+=++
T Consensus 254 ~r~~~d~~g~~~~~~~~~~f~~------dl~~~~-a~~m-~~~l~~~~~~~~~~fgvk~t 305 (1019)
T PRK09853 254 VREILDKMGFDYIGLKEEHFDH------DLQYTD-AVEM-LERLMALAKEKGLGFGVKLT 305 (1019)
T ss_pred HHHHHHhcCCceEecchhhccc------ccchhH-HHHH-HHHHHHHHHHcCceeeEEEe
Confidence 4556788999999999866653 333221 1233 67888888999999998875
No 169
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=33.17 E-value=1.1e+02 Score=29.15 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|+.|+++-+|+--. ...++.+.++|||.|=-|+..
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN~---------------~~~~~~l~~~GVdgIiTD~P~ 254 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVNE---------------PWLYSLLWCSGVPSVTSDASH 254 (351)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEECCHH
Confidence 678899999999999987532 456888999999999988763
No 170
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.94 E-value=2e+02 Score=27.00 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=53.2
Q ss_pred cccchhcCccEEEEccc--c---------cCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-CC-EEEEEecCCCcccCC
Q 038817 3 TSGLAALGYQYINLDDC--W---------AELNRDSTGNFVPKASAFPAGIKALADYVHAK-GL-KLGIYSDAGTQTCSK 69 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdg--W---------~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Gl-k~Giy~~pg~~~c~~ 69 (303)
+..++++||+-|.|=.+ | .....|++|--.-|..|| +..+++.|++. |- .+|+=+.+.... .
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~vg~d~v~vRis~~~~~--~ 232 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAIGADRVGIRLSPFGTF--N 232 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHhCCCceEEEECccccC--C
Confidence 34577899999999543 3 222245666545666788 56788888875 54 456555543110 1
Q ss_pred CCCC--ccchHHHHHHHHHHcCccEEEe
Q 038817 70 TMPG--SLGHEEQDAKTFASWGVDYLKY 95 (303)
Q Consensus 70 ~~pg--~~~~~~~~~~~~~~wGvdylK~ 95 (303)
..++ +.+-....++.+.+-|+|||-+
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 0111 1222345677888899999987
No 171
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=32.84 E-value=1.7e+02 Score=26.40 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCEEEEEecCCC---cccCCCCC-CccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH
Q 038817 42 IKALADYVHAKGLKLGIYSDAGT---QTCSKTMP-GSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~---~~c~~~~p-g~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~ 117 (303)
+..=...++++|+|.-|=+--.. ..+....+ ....++....+.+.++|||.|-+|.=+.. ....|..+.++|+
T Consensus 61 ~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr 137 (256)
T cd06546 61 LWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLR 137 (256)
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHH
Confidence 44445678899999876432111 01100000 11234556667778999999999987653 2346778878886
Q ss_pred h-cCCCeEEEe
Q 038817 118 N-SGRPIFFSL 127 (303)
Q Consensus 118 ~-~g~~i~~~~ 127 (303)
+ .++..+++.
T Consensus 138 ~~~~~~~~lT~ 148 (256)
T cd06546 138 SDFGPDFIITL 148 (256)
T ss_pred HHhCCCcEEEE
Confidence 4 455666654
No 172
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.68 E-value=2.6e+02 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCc
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQ 65 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~ 65 (303)
+..+.++||+.|+|+||=+.|.+.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~ 122 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATP 122 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCC
Confidence 678889999999999999999863
No 173
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=32.52 E-value=1.8e+02 Score=27.58 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCC---cccC---CC-CCCccchHHHHHHHHHHcCccEEEeec
Q 038817 26 DSTGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGT---QTCS---KT-MPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 26 d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~---~~c~---~~-~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
|..+.|--....-|+ ...++..|+.|+| .|..+.+.. ..|. .. ..+++.+.+.+++..+.+|||.+=+|+
T Consensus 34 D~fvywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~ 111 (339)
T cd06547 34 DTFVYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINI 111 (339)
T ss_pred heeecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeee
Confidence 444555444444453 6788899999999 555554431 1222 22 456777889999999999999999998
Q ss_pred CCCC-CCCccchhHHHHHHHHh
Q 038817 98 CFNT-GTSPKERYPIMSKALLN 118 (303)
Q Consensus 98 ~~~~-~~~~~~~y~~~~~al~~ 118 (303)
=... .....++++.+.+.|.+
T Consensus 112 E~~~~~~~~~~~l~~F~~~L~~ 133 (339)
T cd06547 112 ETELGDAEKAKRLIAFLRYLKA 133 (339)
T ss_pred eccCCcHHHHHHHHHHHHHHHH
Confidence 5543 23446677777777754
No 174
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.51 E-value=1.5e+02 Score=27.74 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=52.7
Q ss_pred cccchhcCccEEEEcc--cc---------cCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc---CCEEEEEecCCCcccC
Q 038817 3 TSGLAALGYQYINLDD--CW---------AELNRDSTGNFVPKASAFPAGIKALADYVHAK---GLKLGIYSDAGTQTCS 68 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDd--gW---------~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~---Glk~Giy~~pg~~~c~ 68 (303)
++.++++||+-|.|-. |+ .....|.+|--.-+..+| +..+++.|++. ++.+|+=+.+.. .+
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~vG~d~~v~vri~~~~-~~- 234 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVWPEDKPLFVRISATD-WV- 234 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHcCCCceEEEEEcccc-cC-
Confidence 3456789999999965 34 222345666555555566 56888888875 455666555421 11
Q ss_pred CCCCCc--cchHHHHHHHHHHcCccEEEe
Q 038817 69 KTMPGS--LGHEEQDAKTFASWGVDYLKY 95 (303)
Q Consensus 69 ~~~pg~--~~~~~~~~~~~~~wGvdylK~ 95 (303)
++. ..-....++.+.+.|+|||.+
T Consensus 235 ---~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 235 ---EGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 121 222245677889999999986
No 175
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=32.26 E-value=1.9e+02 Score=24.61 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHH----Hhc
Q 038817 44 ALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKAL----LNS 119 (303)
Q Consensus 44 ~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al----~~~ 119 (303)
...+.+++.|.+++|--- |. + ...++.+..+.+||||+|.-...... ......+.++| ++.
T Consensus 138 ~~l~~l~~~G~~i~ld~~-g~--------~-----~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~ 202 (236)
T PF00563_consen 138 ENLRRLRSLGFRIALDDF-GS--------G-----SSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL 202 (236)
T ss_dssp HHHHHHHHCT-EEEEEEE-TS--------T-----CGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCceeEeeec-cC--------C-----cchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc
Confidence 566679999999987311 10 0 11255688999999999996543333 34444444443 456
Q ss_pred CCCeEEE
Q 038817 120 GRPIFFS 126 (303)
Q Consensus 120 g~~i~~~ 126 (303)
|-.++.+
T Consensus 203 ~~~via~ 209 (236)
T PF00563_consen 203 GIKVIAE 209 (236)
T ss_dssp T-EEEEE
T ss_pred cccccee
Confidence 6666655
No 176
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=32.17 E-value=65 Score=30.75 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchH---HHHHHHHHHcCccEEEeecCCCC
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHE---EQDAKTFASWGVDYLKYDNCFNT 101 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~---~~~~~~~~~wGvdylK~D~~~~~ 101 (303)
.-++.|.+++|++||+.=+=++|.+ +.++ ..+.+.|+++|++.|.+|+-+..
T Consensus 47 ~~~~~l~~~a~~~~~~v~~Disp~~----------l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~ 101 (357)
T PF05913_consen 47 ERLKELLKLAKELGMEVIADISPKV----------LKKLGISYDDLSFFKELGIDGLRLDYGFSG 101 (357)
T ss_dssp HHHHHHHHHHHHCT-EEEEEE-CCH----------HHTTT-BTTBTHHHHHHT-SEEEESSS-SC
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHH----------HHHcCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 3489999999999999876555543 3332 12467799999999999997653
No 177
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=31.87 E-value=45 Score=28.56 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHcCCEEEEEecCC
Q 038817 41 GIKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg 63 (303)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 37889999999999999999875
No 178
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=31.73 E-value=1.4e+02 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.297 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEee
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D 96 (303)
.+|++.+++|+..|++.-|+.+|. ...++.-+++|.++|.+=
T Consensus 111 ~~l~~~v~~L~~~GirVSLFiD~d---------------~~qi~aa~~~gA~~IELh 152 (243)
T COG0854 111 DKLRDAVRRLKNAGIRVSLFIDPD---------------PEQIEAAAEVGAPRIELH 152 (243)
T ss_pred hhHHHHHHHHHhCCCeEEEEeCCC---------------HHHHHHHHHhCCCEEEEe
Confidence 359999999999999999999975 233555678999998863
No 179
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=1.1e+02 Score=25.68 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCC--cccCCC-CCCccchHHHHHHHHHHcCccEEEe
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGT--QTCSKT-MPGSLGHEEQDAKTFASWGVDYLKY 95 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~--~~c~~~-~pg~~~~~~~~~~~~~~wGvdylK~ 95 (303)
|-.......--+|.|+=|..-||. .||... .|| |...++.|++-|||-|-.
T Consensus 25 ~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPg----Y~~~~d~f~~kGVD~I~c 78 (165)
T COG0678 25 GWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPG----YLELADEFKAKGVDEIYC 78 (165)
T ss_pred CcccccHHHhcCCCEEEEEeCCCccCCCcccccCcc----HHHHHHHHHHcCCceEEE
Confidence 344555555557999999998875 578753 355 345677788999997643
No 180
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.44 E-value=3.3e+02 Score=23.90 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGR 121 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~ 121 (303)
+...+++++++|+++-+....-. .| +-+.+++...++.+.+.|++.|-+ +...+.-..+.+..+.+.+.+.-+
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~~~~-~~----~~~~~~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 117 AEEAIEAAKEAGLEVEGSLEDAF-GC----KTDPEYVLEVAKALEEAGADEISL--KDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHCCCeEEEEEEeec-CC----CCCHHHHHHHHHHHHHcCCCEEEe--chhcCCcCHHHHHHHHHHHHHhCC
Confidence 77888899999999888875321 23 235678889999999999998885 222223333444445555544333
Q ss_pred CeEEE
Q 038817 122 PIFFS 126 (303)
Q Consensus 122 ~i~~~ 126 (303)
++-++
T Consensus 190 ~~~~~ 194 (265)
T cd03174 190 DVPLG 194 (265)
T ss_pred CCeEE
Confidence 34444
No 181
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.41 E-value=51 Score=26.65 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=42.8
Q ss_pred ccccchhcCccEEEEcccccCC-C------CCCCCCc----ccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCC
Q 038817 2 VTSGLAALGYQYINLDDCWAEL-N------RDSTGNF----VPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSK 69 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~-~------~d~~G~~----~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~ 69 (303)
++..|+++||++|.+ |=+-. + ....-+. .-.....+. |+.+.+.|+++|++ +-+. +++
T Consensus 19 v~~~L~~~GfeVidL--G~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~-~~~~~~~l~~~gl~~v~vi-------vGG 88 (128)
T cd02072 19 LDHAFTEAGFNVVNL--GVLSPQEEFIDAAIETDADAILVSSLYGHGEID-CKGLREKCDEAGLKDILLY-------VGG 88 (128)
T ss_pred HHHHHHHCCCEEEEC--CCCCCHHHHHHHHHHcCCCEEEEeccccCCHHH-HHHHHHHHHHCCCCCCeEE-------EEC
Confidence 566789999999988 43221 1 0101111 112334444 88899999998883 2222 222
Q ss_pred CCCC-ccchHHHHHHHHHHcCcc
Q 038817 70 TMPG-SLGHEEQDAKTFASWGVD 91 (303)
Q Consensus 70 ~~pg-~~~~~~~~~~~~~~wGvd 91 (303)
.+. .....+.+.+.+++.||+
T Consensus 89 -~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 89 -NLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred -CCCCChhhhHHHHHHHHHcCCC
Confidence 111 122334456778888886
No 182
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.24 E-value=79 Score=30.05 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=43.7
Q ss_pred cchhcCccEEEEcccccCCCCC---CCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCC-ccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPG-SLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d---~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg-~~~~~~ 79 (303)
.|+++|++.|.| |-|+.... ..|+- .++.. ....++.+++.|++ +.+.+..| .|| +.+...
T Consensus 113 ~l~~~G~~rvsl--GvQS~~~~~L~~l~R~----~s~~~-~~~a~~~l~~~g~~~v~~dli~G-------lPgqt~~~~~ 178 (375)
T PRK05628 113 ALRAAGFTRVSL--GMQSAAPHVLAVLDRT----HTPGR-AVAAAREARAAGFEHVNLDLIYG-------TPGESDDDWR 178 (375)
T ss_pred HHHHcCCCEEEE--ecccCCHHHHHHcCCC----CCHHH-HHHHHHHHHHcCCCcEEEEEecc-------CCCCCHHHHH
Confidence 456677777777 77764210 11111 01111 44556677777776 76666554 333 555666
Q ss_pred HHHHHHHHcCccEEEe
Q 038817 80 QDAKTFASWGVDYLKY 95 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~ 95 (303)
.+++.+.+.|++.+.+
T Consensus 179 ~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 179 ASLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHHhcCCCEEEe
Confidence 6777777777777654
No 183
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=31.19 E-value=86 Score=30.96 Aligned_cols=43 Identities=12% Similarity=-0.068 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHH-cCccEEEeecCCCCCCCccchhHHHHHHHHhcC
Q 038817 75 LGHEEQDAKTFAS-WGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG 120 (303)
Q Consensus 75 ~~~~~~~~~~~~~-wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g 120 (303)
++++...++.+.+ .|||.+.+|...+- .......+.+++++..
T Consensus 211 ~~~l~~~~~~w~~~~giDGfRlDavk~v---~~~f~~~~~~~~~~~~ 254 (479)
T PRK09441 211 REELKYWAKWYMETTGFDGFRLDAVKHI---DAWFIKEWIEHVREVA 254 (479)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEhhhcCC---CHHHHHHHHHHHHHhc
Confidence 3445556666665 99999999988763 2334556777776544
No 184
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=31.11 E-value=71 Score=29.72 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCCcccCCCCC---CCcHHHHHHHHHHcCCEEEEEecCC
Q 038817 28 TGNFVPKASAF---PAGIKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 28 ~G~~~~~~~~F---P~G~~~l~~~ih~~Glk~Giy~~pg 63 (303)
+|.+..+..+= ..|+.++.++|+++|.++||++...
T Consensus 134 DgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~ 172 (301)
T TIGR01684 134 DSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGD 172 (301)
T ss_pred CCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 68888876543 2579999999999999999998653
No 185
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=30.70 E-value=1.1e+02 Score=27.99 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=46.3
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHH-cCCEEEEEecCCCcccCCCCCCccchHHHHH
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHA-KGLKLGIYSDAGTQTCSKTMPGSLGHEEQDA 82 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~-~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~ 82 (303)
+.|+++|.++|+||+--...... + .+...| -++.+.+.+++ .|-.++|+ .|.. ...
T Consensus 158 ~~l~~~G~~~iqidEP~l~~~~~--s----~~~~~~-~~~~~~~~~~~~~~~~~~lH------ic~~----------~~~ 214 (321)
T cd03310 158 KELKNRGIVVVQIDEPSLGAVGA--G----AFEDLE-IVDAALEEVSLKSGGDVEVH------LCAP----------LDY 214 (321)
T ss_pred HHHHhcCCcEEEeCCCccccccc--c----ccchHH-HHHHHHHHHhhccCCceEEE------ECCC----------CCH
Confidence 35788999999999954442111 1 001112 26677777776 34445554 5543 234
Q ss_pred HHHHHcCccEEEeecCCCC
Q 038817 83 KTFASWGVDYLKYDNCFNT 101 (303)
Q Consensus 83 ~~~~~wGvdylK~D~~~~~ 101 (303)
..+.+-|+|.|-+|++...
T Consensus 215 ~~l~~~~vd~l~~D~~~~~ 233 (321)
T cd03310 215 EALLELGVDVIGFDAAALP 233 (321)
T ss_pred HHHHhCCCCEEEEecccCc
Confidence 5667779999999998653
No 186
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=30.55 E-value=43 Score=28.57 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCEEEEEecCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg 63 (303)
++.++++|+++|.+++||+.+.
T Consensus 115 ~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 115 ANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred HHHHHHHHHHcCCCeEEEecHH
Confidence 6888999999999999999864
No 187
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=30.38 E-value=56 Score=23.44 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=28.4
Q ss_pred CccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc
Q 038817 10 GYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAK 52 (303)
Q Consensus 10 Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~ 52 (303)
=|..+.||||+-.. .+..|...-|- +.|.| .|.++|+++
T Consensus 5 eYqLidI~dGflsL-m~e~G~~k~Dl-klP~~--elg~~I~~~ 43 (69)
T cd04468 5 EYQLIDIDDGFLSL-MDDDGETREDL-KLPEG--ELGKEIREK 43 (69)
T ss_pred eEEEEeecCCeEEE-EcCCCCcccCC-cCCcH--HHHHHHHHH
Confidence 47889998888764 45568877664 78874 777777764
No 188
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=30.31 E-value=45 Score=27.12 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCEEEEE
Q 038817 42 IKALADYVHAKGLKLGIY 59 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy 59 (303)
++.+.+.||..|+++|||
T Consensus 118 ~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 118 FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHhhCCCcceee
Confidence 799999999999999998
No 189
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.28 E-value=2.5e+02 Score=25.07 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=61.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-CCEEEEEecCCCcccCCCCCC----ccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAK-GLKLGIYSDAGTQTCSKTMPG----SLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Glk~Giy~~pg~~~c~~~~pg----~~~~~~ 79 (303)
-++++||++|.|.-+.... ...+.. =+..++.+.+.+.+. |+.+.+...-....+.. .|. +..+.+
T Consensus 18 ~a~~~G~d~vEl~~~~~~~------~~~~~~--~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~r~~~~~~~~ 88 (279)
T cd00019 18 RAKEIGFDTVAMFLGNPRS------WLSRPL--KKERAEKFKAIAEEGPSICLSVHAPYLINLASP-DKEKREKSIERLK 88 (279)
T ss_pred HHHHcCCCEEEEEcCCCCc------cCCCCC--CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCC-CHHHHHHHHHHHH
Confidence 3578999999886433211 111110 024588999999998 88876643211111111 121 233446
Q ss_pred HHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH-------hcCCCeEEEecc
Q 038817 80 QDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL-------NSGRPIFFSLCE 129 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~-------~~g~~i~~~~c~ 129 (303)
..++.-+..|.+++-+-.-........+.+..+.+.++ +.|-.+.++.+.
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 66777789999998763222111123344444444443 234455566543
No 190
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=30.27 E-value=29 Score=31.57 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCC-CCCCccchhHHHHHHHHhcC
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFN-TGTSPKERYPIMSKALLNSG 120 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~-~~~~~~~~y~~~~~al~~~g 120 (303)
++.|...|+..--+++-+..|-. ++-=|--++..| +..++|+++||++ +|=++. ++.+. ..-|++.+
T Consensus 166 ~~~fl~~L~~lQ~~~~~~~~piR-talVTAR~apah-~RvI~TLr~Wgv~---vDEafFLgG~~K-------~~vL~~~~ 233 (264)
T PF06189_consen 166 FKDFLKKLSKLQKKFPPENSPIR-TALVTARSAPAH-ERVIRTLRSWGVR---VDEAFFLGGLPK-------GPVLKAFR 233 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCCceE-EEEEEcCCCchh-HHHHHHHHHcCCc---HhHHHHhCCCch-------hHHHHhhC
Confidence 88899999988888865444431 221123456678 7899999999995 443322 22211 12344567
Q ss_pred CCeEEE
Q 038817 121 RPIFFS 126 (303)
Q Consensus 121 ~~i~~~ 126 (303)
+.|+|.
T Consensus 234 phIFFD 239 (264)
T PF06189_consen 234 PHIFFD 239 (264)
T ss_pred CCEeec
Confidence 888886
No 191
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.91 E-value=1.7e+02 Score=27.51 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=51.5
Q ss_pred cccchhcCccEEEEccc--c---------cCCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-C--CEEEEEecCCCcccC
Q 038817 3 TSGLAALGYQYINLDDC--W---------AELNRDSTGNFVPKASAFPAGIKALADYVHAK-G--LKLGIYSDAGTQTCS 68 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdg--W---------~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-G--lk~Giy~~pg~~~c~ 68 (303)
++.++++||+.|.|=.+ | .....|++|--.-|..+| +..+++.|++. | +.+|+=+.+..
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~vG~d~~v~iRi~~~D---- 215 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAVGEDFIIIYRLSMLD---- 215 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHcCCCceEEEEecccc----
Confidence 34567899999999331 1 122235665545555566 46778888875 4 44555554321
Q ss_pred CCCCC--ccchHHHHHHHHHHcCccEEEee
Q 038817 69 KTMPG--SLGHEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 69 ~~~pg--~~~~~~~~~~~~~~wGvdylK~D 96 (303)
..++ +.+-....++.+.+.|+|||-+-
T Consensus 216 -~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 216 -LVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred -cCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 1222 22223466788899999999874
No 192
>PRK11059 regulatory protein CsrD; Provisional
Probab=29.86 E-value=1e+02 Score=31.53 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCC
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFN 100 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 100 (303)
+.+.++.+.+|++|.+++|= .-| +...+. ..+.+..+||||+|....
T Consensus 533 ~~~~~~l~~L~~~G~~iaid-dfG------~g~~s~-------~~L~~l~~d~iKid~s~v 579 (640)
T PRK11059 533 SRLRPVLRMLRGLGCRLAVD-QAG------LTVVST-------SYIKELNVELIKLHPSLV 579 (640)
T ss_pred HHHHHHHHHHHHCCCEEEEE-CCC------CCcccH-------HHHHhCCCCEEEECHHHH
Confidence 35889999999999999882 111 112233 346788999999998543
No 193
>PLN02801 beta-amylase
Probab=29.79 E-value=55 Score=32.65 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=33.8
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLG 57 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~G 57 (303)
.||.+|++=|.+|.-|-.-++..-+.. .| +|-+.|++-|++.|||+=
T Consensus 45 ~LK~~GVdGVmvDVWWGiVE~~~P~~Y-----dW-sgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 45 RLKEAGVDGVMVDVWWGIVESKGPKQY-----DW-SAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred HHHHcCCCEEEEeeeeeeeccCCCCcc-----Cc-HHHHHHHHHHHHcCCeEE
Confidence 588999999999776644333322222 12 478999999999999974
No 194
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=29.75 E-value=47 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=30.1
Q ss_pred ccccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCC
Q 038817 2 VTSGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGL 54 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Gl 54 (303)
+++.+++.|++.+++|-|+... .+-++++++-+++.|+
T Consensus 66 la~r~~~~gi~~vv~D~~~~~~---------------~grv~a~~~~~r~~Gl 103 (103)
T cd00432 66 LAKRALEKGIKKVVFDRGGYRY---------------HGRVKALAKGAREGGL 103 (103)
T ss_pred HHHHHHHCCCCEEEEeCCCccc---------------ccHHHHHHHHHHHcCC
Confidence 4567788899999999887752 2348999999999885
No 195
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=29.63 E-value=87 Score=28.74 Aligned_cols=49 Identities=22% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHc-CccEEEeec
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASW-GVDYLKYDN 97 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~w-GvdylK~D~ 97 (303)
..+++.+|+.|++...|+--. .| ....-....+++.+.++ |||.|=-|+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~--~~----~~~~~~~~~~~~~l~~~~GVdgIiTD~ 295 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN--EN----LFLAPDFKQDMDALYNAAGVDGVFTDF 295 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC--cc----cccccccccCHHHHHHHhCCCEEEcCC
Confidence 689999999999999997532 01 11111224567788888 999987775
No 196
>PLN00196 alpha-amylase; Provisional
Probab=29.12 E-value=98 Score=30.28 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=32.8
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcc-----cCCCCCCC--cHHHHHHHHHHcCCEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFV-----PKASAFPA--GIKALADYVHAKGLKL 56 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~-----~~~~~FP~--G~~~l~~~ih~~Glk~ 56 (303)
-|+++|++.|-|=--... ....|.+. .|+.+|-+ -++.|++.+|++|+|+
T Consensus 52 yL~~LGvtaIWL~P~~~s--~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 52 DIAAAGITHVWLPPPSHS--VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred HHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 478889998877332222 12245544 34446632 3899999999999996
No 197
>PLN02803 beta-amylase
Probab=28.72 E-value=58 Score=32.67 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=34.1
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++=|.+|.-|---++..-+.. .| +|-+.|++-|++.|||+=.
T Consensus 115 ~LK~~GVdGVmvDVWWGiVE~~~p~~Y-----dW-sgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 115 ALRSAGVEGVMVDAWWGLVEKDGPMKY-----NW-EGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred HHHHcCCCEEEEEeeeeeeccCCCCcC-----Cc-HHHHHHHHHHHHcCCeEEE
Confidence 578999999999776644333321211 22 4789999999999999753
No 198
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.49 E-value=1.1e+02 Score=27.26 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCC--EEEEEecCCC
Q 038817 42 IKALADYVHAKGL--KLGIYSDAGT 64 (303)
Q Consensus 42 ~~~l~~~ih~~Gl--k~Giy~~pg~ 64 (303)
+..+.++||+.|+ |+||=+.|.+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~T 129 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPET 129 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCC
Confidence 6788899999999 9999999986
No 199
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=28.33 E-value=31 Score=33.44 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=32.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCC-CcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFP-AGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP-~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++-|.+|.-|-.-++.. |.+|- +|-+.|++.|++.|||.=.
T Consensus 24 ~LK~~GV~GVmvdvWWGiVE~~~-------p~~ydWs~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 24 ALKSAGVDGVMVDVWWGIVEGEG-------PQQYDWSGYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp HHHHTTEEEEEEEEEHHHHTGSS-------TTB---HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHcCCcEEEEEeEeeeeccCC-------CCccCcHHHHHHHHHHHHcCCeEEE
Confidence 58899999999977664433221 12221 4789999999999999754
No 200
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=28.24 E-value=1.8e+02 Score=27.05 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccc-hHHHHHHHHHHcCccEEEeec
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLG-HEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~-~~~~~~~~~~~wGvdylK~D~ 97 (303)
.+.+++.+|+.|+++-+|+--.. +.. .|..+. -....++.+.++|||.|=-|+
T Consensus 255 ~~~~v~~a~~~gl~v~~wTvn~~--~~~-~~~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 255 PTDLVEDAHAAGLQVHPYTFRNE--NTF-LPPDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred ccHHHHHHHHcCCEEEEEEecCC--Ccc-cCcccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 34889999999999999985421 000 111111 123456777889999987765
No 201
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=28.00 E-value=94 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=26.5
Q ss_pred CEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 54 LKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 54 lk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
||||+++.+....-....+.........++...+.|||.+-+---
T Consensus 1 Mkfg~~~~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gfd~~w~~eh 45 (307)
T PF00296_consen 1 MKFGIFLPPEFGPDRPSAQQPLDELVELAQLAEELGFDSVWVSEH 45 (307)
T ss_dssp -EEEEEESTTTTTSSTCSCSHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred CeEEEEeCCcCCCCCccccCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 799999987643211111123444456677788999999887653
No 202
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=27.79 E-value=80 Score=26.90 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.3
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEec
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
.+|+.|+++++|=.+ .|.-..|+ + +..-.+.+++.||++|+|.=
T Consensus 19 ~vk~~gi~fviiKat--------eG~~~~D~-~----~~~~~~~a~~~Gl~vG~Yhy 62 (191)
T cd06413 19 RVRAQGVSFAYIKAT--------EGGDHVDK-R----FAENWRGARAAGLPRGAYHF 62 (191)
T ss_pred HHHhCCCcEEEEEEc--------CCCCccCH-H----HHHHHHHHHHcCCceEEEEE
Confidence 356778888877431 23333443 3 55666788999999999964
No 203
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=27.76 E-value=1.7e+02 Score=26.56 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhc
Q 038817 40 AGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNS 119 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~ 119 (303)
.|++.|.+++++.|+.+-- ++ |....++.+.+. +|++|+=--.. .-..+.+++.++
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t--~~--------------~d~~~~~~l~~~-~d~lkI~s~~~-------~n~~LL~~~a~~ 131 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVT--EV--------------MDPRDVEIVAEY-ADILQIGARNM-------QNFELLKEVGKQ 131 (260)
T ss_pred HHHHHHHHHHHHhCCCEEE--ee--------------CChhhHHHHHhh-CCEEEECcccc-------cCHHHHHHHhcC
Confidence 4677777777777776632 11 223345555666 78888743221 113466777778
Q ss_pred CCCeEEEe
Q 038817 120 GRPIFFSL 127 (303)
Q Consensus 120 g~~i~~~~ 127 (303)
|+|++++.
T Consensus 132 gkPVilk~ 139 (260)
T TIGR01361 132 GKPVLLKR 139 (260)
T ss_pred CCcEEEeC
Confidence 88888874
No 204
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=27.55 E-value=1.2e+02 Score=29.01 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCccEEEeecCCCC--CCCccchhHHHHHHHH----hcCCCeEEEe
Q 038817 77 HEEQDAKTFASWGVDYLKYDNCFNT--GTSPKERYPIMSKALL----NSGRPIFFSL 127 (303)
Q Consensus 77 ~~~~~~~~~~~wGvdylK~D~~~~~--~~~~~~~y~~~~~al~----~~g~~i~~~~ 127 (303)
-+...+..++.=|+|+||-|..-.. -.+..+|.....++++ +||+...|..
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~ 198 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAP 198 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEE
Confidence 4455667777889999999986443 2345777777777775 4677655553
No 205
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=27.49 E-value=1.1e+02 Score=29.38 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCccEEEeecCCCC--CCCccchhHHHHHHHH----hcCCCeEEE
Q 038817 78 EEQDAKTFASWGVDYLKYDNCFNT--GTSPKERYPIMSKALL----NSGRPIFFS 126 (303)
Q Consensus 78 ~~~~~~~~~~wGvdylK~D~~~~~--~~~~~~~y~~~~~al~----~~g~~i~~~ 126 (303)
+...+..+.+=|+|+||.|..... -.+..+|.....++++ ++|+..+|.
T Consensus 148 la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~ 202 (367)
T cd08205 148 LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYA 202 (367)
T ss_pred HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEE
Confidence 356677788889999999987654 2456778887777775 466755554
No 206
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.40 E-value=73 Score=29.93 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
-..++.+++.|++++|.+.. ......+++..++.+.+.|++.+++-.+
T Consensus 135 ~~~i~~l~~~g~~v~v~~vv--------~~~N~~~l~~~~~~~~~lg~~~i~~~~~ 182 (358)
T TIGR02109 135 LAMARAVKAAGLPLTLNFVI--------HRHNIDQIPEIIELAIELGADRVELATT 182 (358)
T ss_pred HHHHHHHHhCCCceEEEEEe--------ccCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 34457788899998876542 2334567788888899999999987654
No 207
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=27.24 E-value=43 Score=25.89 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=19.9
Q ss_pred CcccCCCCCCCcHHHHHHHHHHcCCE
Q 038817 30 NFVPKASAFPAGIKALADYVHAKGLK 55 (303)
Q Consensus 30 ~~~~~~~~FP~G~~~l~~~ih~~Glk 55 (303)
++..++-+|| ++.+.++||+.|..
T Consensus 70 ~l~i~kPsFp--l~~~pdFLh~~GkG 93 (103)
T PF10305_consen 70 DLTIDKPSFP--LDDLPDFLHDVGKG 93 (103)
T ss_pred cEEEeCCCCC--chhhHHHHHHhCCC
Confidence 5677777887 89999999999843
No 208
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=27.15 E-value=4.6e+02 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=23.5
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcCCCeEEE
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFS 126 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 126 (303)
.++...+-|.||||..|.. ....|++......-|++.+
T Consensus 165 a~~~a~e~GAD~vKt~~~~--------~~~~l~~~~~~~~ipV~a~ 202 (267)
T PRK07226 165 AARVAAELGADIVKTNYTG--------DPESFREVVEGCPVPVVIA 202 (267)
T ss_pred HHHHHHHHCCCEEeeCCCC--------CHHHHHHHHHhCCCCEEEE
Confidence 3456678999999998542 1244555544445676544
No 209
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=26.79 E-value=80 Score=29.97 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 44 ALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 44 ~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
.-++.+++.|++++|-+.. .+....++...++.+.+.|++++++-..
T Consensus 145 ~~i~~l~~~g~~v~i~~vv--------~~~N~~~i~~~~~~~~~lgv~~i~~~~~ 191 (378)
T PRK05301 145 AVARLVKAHGYPLTLNAVI--------HRHNIDQIPRIIELAVELGADRLELANT 191 (378)
T ss_pred HHHHHHHHCCCceEEEEEe--------ecCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3457888999998876532 2234567778888899999999998654
No 210
>PLN00197 beta-amylase; Provisional
Probab=26.67 E-value=67 Score=32.38 Aligned_cols=48 Identities=27% Similarity=0.533 Sum_probs=34.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++=|.+|.-|---++..-+.. .| +|-+.|++-|++.|||+=.
T Consensus 135 ~LK~~GVdGVmvDvWWGiVE~~~p~~Y-----dW-sgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 135 ALKSAGVEGIMMDVWWGLVERESPGVY-----NW-GGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred HHHHcCCCEEEEeeeeeeeccCCCCcC-----Cc-HHHHHHHHHHHHcCCeEEE
Confidence 578999999999776654333321211 22 4789999999999999754
No 211
>PLN02161 beta-amylase
Probab=26.58 E-value=67 Score=32.08 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=34.0
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++=|.+|.-|---++...+.. .| +|-+.|++-|++.|||+=.
T Consensus 125 ~LK~~GVdGVmvDVWWGiVE~~~p~~Y-----dW-sgY~~l~~mvr~~GLKlq~ 172 (531)
T PLN02161 125 ALKLAGVHGIAVEVWWGIVERFSPLEF-----KW-SLYEELFRLISEAGLKLHV 172 (531)
T ss_pred HHHHcCCCEEEEEeeeeeeecCCCCcC-----Cc-HHHHHHHHHHHHcCCeEEE
Confidence 578999999999776644333221111 12 4789999999999999754
No 212
>PHA02119 hypothetical protein
Probab=26.49 E-value=56 Score=23.44 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=19.2
Q ss_pred ccCCCCCCCcH-HHHHHHHHHcCCEE
Q 038817 32 VPKASAFPAGI-KALADYVHAKGLKL 56 (303)
Q Consensus 32 ~~~~~~FP~G~-~~l~~~ih~~Glk~ 56 (303)
.-+-.|||.=| +.++|||+++|...
T Consensus 45 sf~~~kfp~i~~~divdylr~lgy~~ 70 (87)
T PHA02119 45 SFDVAKFPAIMPKDIVDYLRSLGYDA 70 (87)
T ss_pred EeccccCCccccHHHHHHHHHccchh
Confidence 34567999633 89999999999754
No 213
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=26.40 E-value=49 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHcC-CEEEEEecCC
Q 038817 40 AGIKALADYVHAKG-LKLGIYSDAG 63 (303)
Q Consensus 40 ~G~~~l~~~ih~~G-lk~Giy~~pg 63 (303)
..++++++.++++| .++|||+.+.
T Consensus 104 ~~~~~f~~~~~~~gg~~~~iY~~~~ 128 (186)
T cd00599 104 AWLNAFLNEVEALTGKKPIIYTSPS 128 (186)
T ss_pred HHHHHHHHHHHHHHCCceEEEEcHH
Confidence 34799999999997 9999999875
No 214
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=26.31 E-value=87 Score=29.20 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=28.1
Q ss_pred CCCcccCCCCC---CCcHHHHHHHHHHcCCEEEEEecC
Q 038817 28 TGNFVPKASAF---PAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 28 ~G~~~~~~~~F---P~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
+|.+..+...- +.|+..+.++|+++|.+.||++..
T Consensus 136 D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg 173 (303)
T PHA03398 136 DSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYG 173 (303)
T ss_pred CCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCC
Confidence 57777765543 457999999999999999999853
No 215
>PLN02455 fructose-bisphosphate aldolase
Probab=26.28 E-value=1.4e+02 Score=28.39 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCcc--chHHHHHH---HHHHcCccEEEeecCCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSL--GHEEQDAK---TFASWGVDYLKYDNCFN 100 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~--~~~~~~~~---~~~~wGvdylK~D~~~~ 100 (303)
++++++|+++|.-+||=++-|...-.+ .+|.. .-++...+ .+.+-|..|=|+..+..
T Consensus 87 ~p~~~~L~~~GIvPGIKVDkGl~~l~g-~~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 148 (358)
T PLN02455 87 KPFVDVLKENGVLPGIKVDKGTVELAG-TNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLK 148 (358)
T ss_pred cCHHHHHHHCCCeeeEEecCCccccCC-CCCCccCcchHHHHHHHHHHHhcCCceeeceeeee
Confidence 578899999999999999987654332 23321 12344444 44555999999988653
No 216
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=26.25 E-value=1.9e+02 Score=27.32 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=53.1
Q ss_pred cccchhcCccEEEEcccc--------c---CCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-CCEEEEEecCCCcccCCC
Q 038817 3 TSGLAALGYQYINLDDCW--------A---ELNRDSTGNFVPKASAFPAGIKALADYVHAK-GLKLGIYSDAGTQTCSKT 70 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW--------~---~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Glk~Giy~~pg~~~c~~~ 70 (303)
+..++++||+-|.|=.+= . ....|++|--.-|..|| +..+++.|++. .+.+|+=+.+...
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf---~~eii~~ir~~~~~~v~vRis~~d~----- 219 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRF---LREIIDAVKEVWDGPLFVRISASDY----- 219 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHH---HHHHHHHHHHhcCCCeEEEeccccc-----
Confidence 345778999999996651 1 11235565445555677 45777777776 5666766654311
Q ss_pred CC-C-ccchHHHHHHHHHHcCccEEEeec
Q 038817 71 MP-G-SLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 71 ~p-g-~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
.+ | +.+-....++.+.+.|+|||-+-.
T Consensus 220 ~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 220 HPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 12 2 122224566778889999988743
No 217
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=26.04 E-value=63 Score=32.59 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 28 TGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 28 ~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.|+++-|++.||+=+.++.+.+|..|.+++.|-..
T Consensus 261 lGDPvG~~~~~~eli~~F~e~A~~~G~r~~fy~vs 295 (538)
T COG2898 261 LGDPVGDEEAWPELIWAFLELADRHGWRPVFYGVS 295 (538)
T ss_pred ecCCCCChhHhHHHHHHHHHHHHhcCCeeEEEEeC
Confidence 68999999999998899999999999999999653
No 218
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.94 E-value=57 Score=27.60 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHc-CCEEEEEecCC
Q 038817 41 GIKALADYVHAK-GLKLGIYSDAG 63 (303)
Q Consensus 41 G~~~l~~~ih~~-Glk~Giy~~pg 63 (303)
-+.++.+.|+++ |.+++||+.+.
T Consensus 104 ~~~~f~~~v~~~~G~~~~iY~~~~ 127 (184)
T cd06525 104 YVLRFIEEFEKLSGLKVGIYTYTS 127 (184)
T ss_pred HHHHHHHHHHHHHCCCeEEEecHH
Confidence 368899999999 99999999875
No 219
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.80 E-value=2e+02 Score=27.38 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=47.2
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCccc-CCCCCCCcHHH-HHHH----HHHc--CCEEEEEecCCCcccCCCCCCcc
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVP-KASAFPAGIKA-LADY----VHAK--GLKLGIYSDAGTQTCSKTMPGSL 75 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~-~~~~FP~G~~~-l~~~----ih~~--Glk~Giy~~pg~~~c~~~~pg~~ 75 (303)
..|.++|+++||||+.-.....+..++-.. ....-|+.+.. .++. +... ++.+++++..|...-.....|
T Consensus 177 ~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~-- 254 (368)
T PRK06520 177 KAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEG-- 254 (368)
T ss_pred HHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCcccccc--
Confidence 357889999999999754322221111110 11001222221 1122 2223 666777776653321111222
Q ss_pred chHHHHHHH-HHHcCccEEEeecCC
Q 038817 76 GHEEQDAKT-FASWGVDYLKYDNCF 99 (303)
Q Consensus 76 ~~~~~~~~~-~~~wGvdylK~D~~~ 99 (303)
+ ++..+.. |.+-.||.+=+++..
T Consensus 255 ~-y~~i~~~L~~~~~vd~~~lE~~~ 278 (368)
T PRK06520 255 G-YEPVAETLFGGVNVDAFFLEYDN 278 (368)
T ss_pred c-hhHHHHHHHhhcCCCeEEEEecc
Confidence 2 3445665 678899988888864
No 220
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=25.44 E-value=2.6e+02 Score=24.07 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccc----hHHHHHHHHHHcCccEEEee
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLG----HEEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~----~~~~~~~~~~~wGvdylK~D 96 (303)
++.+.+++++.|+++|+=..|. +++... ++......-.+.|++..|.-
T Consensus 95 l~~~i~~~~~~g~~~~v~~~~~-------~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 95 LKAVVEAAAESGGKVFVVVEMS-------HPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHHhcCCeEEEEEeCC-------CCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 8899999999999999977653 233333 33444455568999998843
No 221
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.43 E-value=2.1e+02 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhcC
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSG 120 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~g 120 (303)
|++.|.++.++.|+.+-- + -|....++.+++ .+|++|+=--.. .-..+.+++.++|
T Consensus 67 gl~~L~~~~~~~Gl~~~T--e--------------v~d~~~v~~~~e-~vdilqIgs~~~-------~n~~LL~~va~tg 122 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVS--E--------------IMSERQLEEAYD-YLDVIQVGARNM-------QNFEFLKTLSHID 122 (250)
T ss_pred HHHHHHHHHHHcCCCEEE--e--------------eCCHHHHHHHHh-cCCEEEECcccc-------cCHHHHHHHHccC
Confidence 688888888888887621 1 133456677777 699999854221 1145778888889
Q ss_pred CCeEEEe
Q 038817 121 RPIFFSL 127 (303)
Q Consensus 121 ~~i~~~~ 127 (303)
+|++++.
T Consensus 123 kPVilk~ 129 (250)
T PRK13397 123 KPILFKR 129 (250)
T ss_pred CeEEEeC
Confidence 9998874
No 222
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=25.42 E-value=98 Score=24.45 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCCccchH-HHHHHHHHHcCccEEEee
Q 038817 40 AGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPGSLGHE-EQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg~~~~~-~~~~~~~~~wGvdylK~D 96 (303)
..+....+.++++|++ .|+|.+ ||....+. ..|.+.+..+|+.|+=+.
T Consensus 56 ~~~~~~~~~~~~~g~~~vG~~HS---------HP~~~~~PS~~D~~~~~~~~~~~lIv~ 105 (128)
T cd08070 56 AEQLAAQREARERGLEVVGIYHS---------HPDGPARPSETDLRLAWPPGVSYLIVS 105 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeC---------CCCCCCCCCHHHHHhccCCCCeEEEEE
Confidence 3467778889999987 788876 44443333 556777766666666554
No 223
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.22 E-value=4.9e+02 Score=23.21 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~ 117 (303)
++..+++++++|++.-+...- + ..-+.+++...++.+.+.|+|.|-+ +...+.-.......+.+.++
T Consensus 114 ~~~~i~~ak~~G~~v~~~~~~----~---~~~~~~~~~~~~~~~~~~G~d~i~l--~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 114 SEQHIGAARKLGMDVVGFLMM----S---HMASPEELAEQAKLMESYGADCVYV--TDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred HHHHHHHHHHCCCeEEEEEEe----c---cCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCcCHHHHHHHHHHHH
Confidence 566677777777766555431 1 1123467777788888888887644 44433333444455555554
No 224
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.21 E-value=2e+02 Score=27.18 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=53.2
Q ss_pred cccchhcCccEEEEccc--c------cC---CCCCCCCCcccCCCCCCCcHHHHHHHHHHc-------CCEEEEEecCCC
Q 038817 3 TSGLAALGYQYINLDDC--W------AE---LNRDSTGNFVPKASAFPAGIKALADYVHAK-------GLKLGIYSDAGT 64 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdg--W------~~---~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-------Glk~Giy~~pg~ 64 (303)
+..++++||+-|.|=.+ | .. ...|++|--.-|..|| +..+++.|++. .+.+|+=..+..
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~---~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRF---PLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHH---HHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 34567899999999653 2 21 1235665434466677 56777777763 456666665531
Q ss_pred cccCCCCCCccch--HHHHHHHHHHcCccEEEeec
Q 038817 65 QTCSKTMPGSLGH--EEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 65 ~~c~~~~pg~~~~--~~~~~~~~~~wGvdylK~D~ 97 (303)
..+|-... ....++.+.+.|+|||-+..
T Consensus 227 -----~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 227 -----PEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred -----ccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 12222222 24567788999999998865
No 225
>PLN02705 beta-amylase
Probab=25.15 E-value=69 Score=32.75 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=33.9
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++=|.+|.-|---++..-+.. .| +|-+.|++-|++.|||+=.
T Consensus 276 aLK~aGVdGVmvDVWWGiVE~~~P~~Y-----dW-sgY~~L~~mvr~~GLKlqv 323 (681)
T PLN02705 276 HMKSLNVDGVVVDCWWGIVEGWNPQKY-----VW-SGYRELFNIIREFKLKLQV 323 (681)
T ss_pred HHHHcCCCEEEEeeeeeEeecCCCCcC-----Cc-HHHHHHHHHHHHcCCeEEE
Confidence 578999999999776644333221111 22 4789999999999999754
No 226
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=3.2e+02 Score=26.79 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCC-CC------------------Cccch--H----HHHHHHHHHcCccEEEee
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKT-MP------------------GSLGH--E----EQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~-~p------------------g~~~~--~----~~~~~~~~~wGvdylK~D 96 (303)
...+|-|++.+|.|.+| .|+.+ .+ |++.. . ..=++.|+.-+||.|-+|
T Consensus 118 c~KlA~y~kkkG~K~~L-------vcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvD 190 (483)
T KOG0780|consen 118 CTKLAYYYKKKGYKVAL-------VCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVD 190 (483)
T ss_pred HHHHHHHHHhcCCceeE-------EeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEe
Confidence 58899999999999998 34322 12 22211 1 223566888889988888
Q ss_pred cCCCCCCCccchhHHHHHHHHhcCCC
Q 038817 97 NCFNTGTSPKERYPIMSKALLNSGRP 122 (303)
Q Consensus 97 ~~~~~~~~~~~~y~~~~~al~~~g~~ 122 (303)
=.+.- ....+.+..|.+..+++.++
T Consensus 191 TSGRh-~qe~sLfeEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 191 TSGRH-KQEASLFEEMKQVSKAIKPD 215 (483)
T ss_pred CCCch-hhhHHHHHHHHHHHhhcCCC
Confidence 55431 12234455566555556554
No 227
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=24.98 E-value=2e+02 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=28.1
Q ss_pred CeeEEEEEcCC-CCEEEEEEeCCCCceEEEEEcccc
Q 038817 252 DLEVWAGPLSG-NRVAVVLWNRGSSKATVTANWSDI 286 (303)
Q Consensus 252 ~~~vw~~~l~~-g~~~va~fN~~~~~~~~~~~~~~l 286 (303)
..-+.+..+.+ ++..|++.|++.++++++|+++.+
T Consensus 609 gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~ 644 (688)
T TIGR02455 609 GLLVMVHELPAGKGIQITALNFGADAIAEEICLPGF 644 (688)
T ss_pred cEEEEEEEcCCCCceEEEeeccCCCCeeeEEecccc
Confidence 45566677664 478999999999999999998866
No 228
>PRK09936 hypothetical protein; Provisional
Probab=24.97 E-value=82 Score=29.20 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=35.7
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCC--Cc-HHHHHHHHHHcCCE--EEEEecCCC
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFP--AG-IKALADYVHAKGLK--LGIYSDAGT 64 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP--~G-~~~l~~~ih~~Glk--~Giy~~pg~ 64 (303)
.+++.|++++++ =|... .++ .|+ +| |..+.+..+++|+| +|||.+|..
T Consensus 46 ~~~~~G~~tLiv--QWt~y-G~~---------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y 98 (296)
T PRK09936 46 QLRLQGFDTLVV--QWTRY-GDA---------DFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEF 98 (296)
T ss_pred HHHHcCCcEEEE--Eeeec-cCC---------CcccchHHHHHHHHHHHHcCCEEEEcccCChHH
Confidence 467899999999 67654 222 343 22 68888889999998 899999864
No 229
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.86 E-value=1e+02 Score=26.04 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKT 84 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~ 84 (303)
.+++.|+++++|=.. .|.-..|+ + +..-.+.+++.|+++|+|.=.- .|.. + .+-.+..++.
T Consensus 16 ~~k~~gi~fviiKat--------eG~~y~D~-~----~~~~~~~a~~aGl~~G~Yhy~~--~~~~--a--~~qA~~f~~~ 76 (184)
T cd06525 16 AVKDSGVEVVYIKAT--------EGTTFVDS-Y----FNENYNGAKAAGLKVGFYHFLV--GTSN--P--EEQAENFYNT 76 (184)
T ss_pred HHHhCCCeEEEEEec--------CCCcccCH-h----HHHHHHHHHHCCCceEEEEEee--CCCC--H--HHHHHHHHHh
Confidence 456778888888331 24444454 3 5666778889999999998542 1211 1 1111233344
Q ss_pred HHHcCcc-EEEeecCCCCCCC---ccchhHHHHHHHHhc-CC-CeEEE
Q 038817 85 FASWGVD-YLKYDNCFNTGTS---PKERYPIMSKALLNS-GR-PIFFS 126 (303)
Q Consensus 85 ~~~wGvd-ylK~D~~~~~~~~---~~~~y~~~~~al~~~-g~-~i~~~ 126 (303)
+.+-+.+ .+-+|.=...... ......++.+.|++. |+ +++|+
T Consensus 77 ~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 77 IKGKKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred ccccCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 4444443 3445543222111 122334566777654 64 66665
No 230
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=24.72 E-value=1.9e+02 Score=23.77 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCC-EEEEEecCCCcccC--CCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhc
Q 038817 43 KALADYVHAKGL-KLGIYSDAGTQTCS--KTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNS 119 (303)
Q Consensus 43 ~~l~~~ih~~Gl-k~Giy~~pg~~~c~--~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~ 119 (303)
....+.+.+.|+ .+.+=.+.+..... -....+.......++.+.+-|+-.+++..+..-.....+.+....+.+.+.
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHc
Confidence 456666666665 45555554321100 012234444455556666666323455544321112234444455555555
Q ss_pred CCC
Q 038817 120 GRP 122 (303)
Q Consensus 120 g~~ 122 (303)
+..
T Consensus 180 ~~~ 182 (216)
T smart00729 180 GPD 182 (216)
T ss_pred CCC
Confidence 544
No 231
>COG4574 Eco Serine protease inhibitor ecotin [General function prediction only]
Probab=24.59 E-value=33 Score=27.86 Aligned_cols=20 Identities=35% Similarity=0.800 Sum_probs=17.2
Q ss_pred HHHHHHcCccEEEeecCCCC
Q 038817 82 AKTFASWGVDYLKYDNCFNT 101 (303)
Q Consensus 82 ~~~~~~wGvdylK~D~~~~~ 101 (303)
.+++..||+||.-+|-+..+
T Consensus 81 tkTLeGWGy~Yyv~DkVs~P 100 (162)
T COG4574 81 TKTLEGWGYDYYVFDKVSSP 100 (162)
T ss_pred cceeccccceeEEEeccCCc
Confidence 46789999999999998764
No 232
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=24.48 E-value=1.7e+02 Score=24.46 Aligned_cols=70 Identities=23% Similarity=0.450 Sum_probs=37.8
Q ss_pred ccEEEEcccccCCCCCCCCCcccCCCCCCC----cHHHH-HHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHH
Q 038817 11 YQYINLDDCWAELNRDSTGNFVPKASAFPA----GIKAL-ADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTF 85 (303)
Q Consensus 11 y~~v~iDdgW~~~~~d~~G~~~~~~~~FP~----G~~~l-~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~ 85 (303)
|+.|.+|==|........| .-...+|- -|+.| +..|.+.|=-+.||+..- ..+.. -.+.|
T Consensus 1 fdvI~~DPPW~~~~~~~~~---~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~-----------~~~~~-~~~l~ 65 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG---GAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS-----------QLPEA-KLELF 65 (176)
T ss_pred CCEEEEeCCCCCcCccccc---ccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc-----------hhhHH-HHHHH
Confidence 7899999999875322112 11123332 12222 334444555566766532 11112 46779
Q ss_pred HHcCccEEEe
Q 038817 86 ASWGVDYLKY 95 (303)
Q Consensus 86 ~~wGvdylK~ 95 (303)
..|||+|+-.
T Consensus 66 ~~WGf~~~~~ 75 (176)
T PF05063_consen 66 PAWGFEYVTE 75 (176)
T ss_pred HhCCCEEEEE
Confidence 9999999533
No 233
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.40 E-value=1.5e+02 Score=28.01 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=40.1
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE-------EecCCCcccCCCCCC----
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI-------YSDAGTQTCSKTMPG---- 73 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi-------y~~pg~~~c~~~~pg---- 73 (303)
-||++|+++|-|-= |-.... -|....+ -..+++++++++|||+=| |.+|+.+.-...=.+
T Consensus 32 ilk~~G~N~vRlRv-wv~P~~--~g~~~~~------~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~ 102 (332)
T PF07745_consen 32 ILKDHGVNAVRLRV-WVNPYD--GGYNDLE------DVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFD 102 (332)
T ss_dssp HHHHTT--EEEEEE--SS-TT--TTTTSHH------HHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHH
T ss_pred HHHhcCCCeEEEEe-ccCCcc--cccCCHH------HHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHH
Confidence 36778888888743 665421 1222111 268999999999999875 224554322110011
Q ss_pred -----ccchHHHHHHHHHHcCcc
Q 038817 74 -----SLGHEEQDAKTFASWGVD 91 (303)
Q Consensus 74 -----~~~~~~~~~~~~~~wGvd 91 (303)
.+.|-..+.+.|++-|+.
T Consensus 103 ~l~~~v~~yT~~vl~~l~~~G~~ 125 (332)
T PF07745_consen 103 QLAKAVYDYTKDVLQALKAAGVT 125 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC
Confidence 235667777888988875
No 234
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.39 E-value=3.9e+02 Score=22.93 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=47.7
Q ss_pred cccchhcCccEEEEcccccCC--CCCCCCCcccCCCCCCCcHHHHHHHHHHc-CCEEEEEecCCCcccCCCCCCccchHH
Q 038817 3 TSGLAALGYQYINLDDCWAEL--NRDSTGNFVPKASAFPAGIKALADYVHAK-GLKLGIYSDAGTQTCSKTMPGSLGHEE 79 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW~~~--~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Glk~Giy~~pg~~~c~~~~pg~~~~~~ 79 (303)
++.++++||+-|.|-.|--.. ..|.+|--.-+..+| +..+++.+++. ++.+.+-...+. .. .....
T Consensus 73 a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~---~~eii~~v~~~~~~~v~vk~r~~~-----~~---~~~~~ 141 (231)
T cd02801 73 AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL---VAEIVRAVREAVPIPVTVKIRLGW-----DD---EEETL 141 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHH---HHHHHHHHHHhcCCCEEEEEeecc-----CC---chHHH
Confidence 345677899999997653111 123344333332233 67888888764 333433332221 00 12345
Q ss_pred HHHHHHHHcCccEEEeec
Q 038817 80 QDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~ 97 (303)
..++.+.+.|+|+|.+..
T Consensus 142 ~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 142 ELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHHHhCCCEEEECC
Confidence 667888999999998754
No 235
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=24.23 E-value=58 Score=27.92 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHcCCEEEEEecCC
Q 038817 41 GIKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg 63 (303)
-++.+.++|++.|.++|||+.+-
T Consensus 109 ~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 109 AILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHHHHHhCCCcEEEecHH
Confidence 37889999999999999998763
No 236
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=24.19 E-value=2.2e+02 Score=27.34 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCCcccCCCCCCC-----cHHHHHHHHHHcC--CEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCC
Q 038817 28 TGNFVPKASAFPA-----GIKALADYVHAKG--LKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFN 100 (303)
Q Consensus 28 ~G~~~~~~~~FP~-----G~~~l~~~ih~~G--lk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 100 (303)
-|.-...|.+||+ .|..++++|++.+ ...|+=+.++ ..++.++.-..+-|+|||-+|.-..
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~------------~~~~~~~~~~~~ag~D~ItIDG~~G 238 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAG------------RGVEDIAAGAAKAGADFITIDGAEG 238 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-S------------TTHHHHHHHHHHTT-SEEEEE-TT-
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCC------------CcHHHHHHhhhhccCCEEEEeCCCC
Confidence 3555666778875 5788899999986 6677755543 1233344447788999999999764
Q ss_pred CC------------CCccchhHHHHHHHHhcC
Q 038817 101 TG------------TSPKERYPIMSKALLNSG 120 (303)
Q Consensus 101 ~~------------~~~~~~y~~~~~al~~~g 120 (303)
+. .+.........+.|.+.|
T Consensus 239 GTGAap~~~~d~~GlP~~~~l~~a~~~L~~~g 270 (368)
T PF01645_consen 239 GTGAAPLTSMDHVGLPTEYALARAHQALVKNG 270 (368)
T ss_dssp --SSEECCHHHHC---HHHHHHHHHHHHHCTT
T ss_pred CCCCCchhHHhhCCCcHHHHHHHHHHHHHHcC
Confidence 31 222334445667776655
No 237
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=1.9e+02 Score=27.47 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeec
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 97 (303)
|+..++++|+.|.|+=+=++... +++........++.+.+-|+|.|-+=-
T Consensus 51 l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 51 LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 99999999999999855444321 555555567888999999999877644
No 238
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=24.08 E-value=1e+02 Score=28.41 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcC--CEEEEEecCCCcc------cCCCCCC-ccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHH
Q 038817 42 IKALADYVHAKG--LKLGIYSDAGTQT------CSKTMPG-SLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIM 112 (303)
Q Consensus 42 ~~~l~~~ih~~G--lk~Giy~~pg~~~------c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~ 112 (303)
+..+.+.+|++. +|+-|-+.-.... -.. .|. ...+++..++.+.++|||.|-+|+-++......+.|..+
T Consensus 53 ~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~-~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~l 131 (299)
T cd02879 53 FSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMAS-DPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKL 131 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhC-CHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHH
Confidence 666777777664 6665543221100 001 222 234567788889999999999998876433334455544
Q ss_pred ----HHHHHh----cC-CCeEEEec
Q 038817 113 ----SKALLN----SG-RPIFFSLC 128 (303)
Q Consensus 113 ----~~al~~----~g-~~i~~~~c 128 (303)
+++|.+ .+ +.++++..
T Consensus 132 l~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 132 LEEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEee
Confidence 444432 22 45666654
No 239
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.75 E-value=1.7e+02 Score=25.76 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCF 99 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 99 (303)
+.+++.+|. |++..+|+--. ...++.+.++|||.|=-|+..
T Consensus 192 ~~~v~~~~~-g~~v~~WTVn~---------------~~~~~~l~~~GVdgIiTD~P~ 232 (235)
T cd08565 192 WELVRAAVP-GLRLGVWTVND---------------DSLIRYWLACGVRQLTTDRPD 232 (235)
T ss_pred HHHHHHHhC-CCEEEEEccCC---------------HHHHHHHHHcCCCEEEeCCcc
Confidence 456677764 99988886421 456888999999999888753
No 240
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=23.49 E-value=2.9e+02 Score=25.26 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHcCC-----EEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 39 PAGIKALADYVHAKGL-----KLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 39 P~G~~~l~~~ih~~Gl-----k~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
+.+.+.|.+.+|++|. ++-+|+--. ...++.+.++|||.|=-|+.
T Consensus 190 ~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~---------------~~~~~~ll~~GVDGIITD~P 239 (265)
T cd08576 190 YRTCARLREAIKKRDTPGYLGKVYGWTSDK---------------GSSVRKLLRLGVDGIITNYP 239 (265)
T ss_pred ccccHHHHHHHHHcCCCCcCCeEEEEeCCC---------------HHHHHHHHhcCCCEEEECCH
Confidence 4678999999999999 776765321 35678889999999988876
No 241
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=23.41 E-value=1.3e+02 Score=34.89 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=39.2
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCC----C--CCcHHHHHHHHHHcCCEEEEEecC
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASA----F--PAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~----F--P~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.|+++|++.|-+=--+........|..+.|..+ | ..+++.|++.+|++||++=+=+-|
T Consensus 766 Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 766 YLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 478999999998555553222234555554432 2 226899999999999988765544
No 242
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.30 E-value=2.7e+02 Score=26.53 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCEEEEEec---------CCCc-ccCCCCCCccchHHHHHHH-HHHcCccEEEeecCCC
Q 038817 42 IKALADYVHAKGLKLGIYSD---------AGTQ-TCSKTMPGSLGHEEQDAKT-FASWGVDYLKYDNCFN 100 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~---------pg~~-~c~~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 100 (303)
.+.+++.+|+.||+.-.|+- ||.. .+....+-..+-+...++. +.+.|||.|=-||...
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~ 349 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPAT 349 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCc
Confidence 46899999999999999985 2111 1111111112222333443 4489999999998753
No 243
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=23.17 E-value=1.1e+02 Score=27.06 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=38.9
Q ss_pred CccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcC
Q 038817 10 GYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWG 89 (303)
Q Consensus 10 Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wG 89 (303)
.|+.|.+|- |.. +.-...-|| |.+.+.++|+++|.++++=++.. +. .....+.+.+.|
T Consensus 7 ~~~~~~~D~-dG~--------l~~~~~~~p-ga~e~L~~L~~~G~~~~ivTN~~-----------~~-~~~~~~~L~~~g 64 (242)
T TIGR01459 7 DYDVFLLDL-WGV--------IIDGNHTYP-GAVQNLNKIIAQGKPVYFVSNSP-----------RN-IFSLHKTLKSLG 64 (242)
T ss_pred cCCEEEEec-ccc--------cccCCccCc-cHHHHHHHHHHCCCEEEEEeCCC-----------CC-hHHHHHHHHHCC
Confidence 377777743 443 222334577 59999999999999999866531 11 122346678888
Q ss_pred cc
Q 038817 90 VD 91 (303)
Q Consensus 90 vd 91 (303)
++
T Consensus 65 l~ 66 (242)
T TIGR01459 65 IN 66 (242)
T ss_pred CC
Confidence 86
No 244
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.10 E-value=1.4e+02 Score=28.33 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=42.1
Q ss_pred cchhcCccEEEEcccccCCCC---CCCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCC-ccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNR---DSTGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPG-SLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~---d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg-~~~~~~ 79 (303)
.|+++|++.|.| |-|+... +..|+- ..+. -+...++.+++.|++ +.+-+..| .|| +.+..+
T Consensus 108 ~lk~~G~nrisi--GvQS~~d~vL~~l~R~----~~~~-~~~~ai~~lr~~G~~~v~~dlI~G-------lPgqt~e~~~ 173 (353)
T PRK05904 108 LLKKNKVNRISL--GVQSMNNNILKQLNRT----HTIQ-DSKEAINLLHKNGIYNISCDFLYC-------LPILKLKDLD 173 (353)
T ss_pred HHHHcCCCEEEE--ecccCCHHHHHHcCCC----CCHH-HHHHHHHHHHHcCCCcEEEEEeec-------CCCCCHHHHH
Confidence 456677777766 6665421 112221 1111 245556667777765 55555443 233 455556
Q ss_pred HHHHHHHHcCccEEEeec
Q 038817 80 QDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~ 97 (303)
.+++.+.+.+++.+.+=.
T Consensus 174 ~tl~~~~~l~p~~is~y~ 191 (353)
T PRK05904 174 EVFNFILKHKINHISFYS 191 (353)
T ss_pred HHHHHHHhcCCCEEEEEe
Confidence 666666777776665443
No 245
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.05 E-value=2.4e+02 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHcCccEEEeecCCCCCCCccchh-HHHHHHHHhcCCCeEEE
Q 038817 75 LGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERY-PIMSKALLNSGRPIFFS 126 (303)
Q Consensus 75 ~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y-~~~~~al~~~g~~i~~~ 126 (303)
..+++..++.+.+.|+|+|-+|-+... +-+.-.+ ..+.++|++.+++++++
T Consensus 18 ~~~l~~~~~~l~~~~~~~~H~DimDg~-fvpn~~~G~~~v~~lr~~~~~~~lD 69 (228)
T PTZ00170 18 FSKLADEAQDVLSGGADWLHVDVMDGH-FVPNLSFGPPVVKSLRKHLPNTFLD 69 (228)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCc-cCCCcCcCHHHHHHHHhcCCCCCEE
Confidence 467888999999999999999998632 1122122 35666776666555555
No 246
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=22.94 E-value=1.2e+02 Score=28.33 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHH---HHHHHHHHcCccEEEeec
Q 038817 41 GIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEE---QDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 41 G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~---~~~~~~~~wGvdylK~D~ 97 (303)
-|+.|++..++.|++|+.=+.||...|-. +.+.++ .=++++.+-||+.+=+=|
T Consensus 57 ~l~~L~~~a~~~~V~Fv~aisPg~~~~~s----~~~d~~~L~~K~~ql~~lGvr~Failf 112 (306)
T PF07555_consen 57 ELKELADAAKANGVDFVYAISPGLDICYS----SEEDFEALKAKFDQLYDLGVRSFAILF 112 (306)
T ss_dssp HHHHHHHHHHHTT-EEEEEEBGTTT--TS----HHHHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred HHHHHHHHHHHcCCEEEEEECcccccccC----cHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 48999999999999999999999876632 222333 334567889999877765
No 247
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.79 E-value=2.7e+02 Score=26.22 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=51.1
Q ss_pred ccchhcCccEEEEcc--ccc-----C----CCCCCCCCcccCCCCCCCcHHHHHHHHHHc-CC--EEEEEecCCCcccCC
Q 038817 4 SGLAALGYQYINLDD--CWA-----E----LNRDSTGNFVPKASAFPAGIKALADYVHAK-GL--KLGIYSDAGTQTCSK 69 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDd--gW~-----~----~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Gl--k~Giy~~pg~~~c~~ 69 (303)
..++++||+-|.|=. ||- . ...|++|--.-+..+| +..+++.|++. |. .+|+=+.+...
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~vg~~~~v~iRl~~~~~---- 220 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAVGPDFIVGIRISGDED---- 220 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHcCCCCeEEEEeehhhc----
Confidence 456789999999976 662 1 1236666545555576 56788888876 53 44554443211
Q ss_pred CCCC--ccchHHHHHHHHHHcC-ccEEEe
Q 038817 70 TMPG--SLGHEEQDAKTFASWG-VDYLKY 95 (303)
Q Consensus 70 ~~pg--~~~~~~~~~~~~~~wG-vdylK~ 95 (303)
.+| +.+-....++.+.+.| +|||-+
T Consensus 221 -~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 221 -TEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred -cCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 122 1222235677788888 888876
No 248
>PRK09505 malS alpha-amylase; Reviewed
Probab=22.65 E-value=1.5e+02 Score=30.91 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=32.8
Q ss_pred cchhcCccEEEEcccccCCC-------------CCCCCCcccCC----CCCC--CcHHHHHHHHHHcCCEEE
Q 038817 5 GLAALGYQYINLDDCWAELN-------------RDSTGNFVPKA----SAFP--AGIKALADYVHAKGLKLG 57 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~-------------~d~~G~~~~~~----~~FP--~G~~~l~~~ih~~Glk~G 57 (303)
-|+++|++.|.|=--+.... -...|.+..|- .+|- .-++.|++.+|++|||+=
T Consensus 238 yl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 238 YLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 47889999998732222100 01135555542 2342 148999999999999954
No 249
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.57 E-value=3.4e+02 Score=25.84 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred cccchhcCccEEEEcccc--c---------CCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-C--CEEEEEecCCCcccC
Q 038817 3 TSGLAALGYQYINLDDCW--A---------ELNRDSTGNFVPKASAFPAGIKALADYVHAK-G--LKLGIYSDAGTQTCS 68 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdgW--~---------~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-G--lk~Giy~~pg~~~c~ 68 (303)
+...+++||+-|.|=.+= - ....|++|--.-|..|| +..+++.|++. | +.+|+=+.+.. .+.
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf---~~eii~air~~vG~d~~v~vRis~~~-~~~ 225 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRF---AAEVVKAIRAAVGPDFPIILRFSQWK-QQD 225 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHcCCCCeEEEEECccc-ccc
Confidence 345678999999996543 1 11246677666677788 57888888886 5 67888777532 111
Q ss_pred CCCCCccchH--HHHHHHHHHcCccEEEee
Q 038817 69 KTMPGSLGHE--EQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 69 ~~~pg~~~~~--~~~~~~~~~wGvdylK~D 96 (303)
....+..... ...++.+.+.|+|||-+-
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1012222332 345666788899998663
No 250
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=22.43 E-value=1.5e+02 Score=29.60 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHhhhchHHHHhhcccC--CCccEEeeec-----CCeeEEEEEcCCCCEEEEEEeCCCCceEEEEEccc
Q 038817 224 FNILSNKEVIAVNQDKL--GVQGKKVKKE-----GDLEVWAGPLSGNRVAVVLWNRGSSKATVTANWSD 285 (303)
Q Consensus 224 ~~~l~N~~~iai~qd~l--g~~~~~v~~~-----~~~~vw~~~l~~g~~~va~fN~~~~~~~~~~~~~~ 285 (303)
-++.++++--.+-|-.. -.-+++|... ++.++-.-..+||+.+|+++|.+++++.++|.+.+
T Consensus 405 ~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~ 473 (496)
T PF02055_consen 405 GEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKD 473 (496)
T ss_dssp TEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEEC
T ss_pred CeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEec
Confidence 34566777655544321 0113445421 13555555567999999999999988875555544
No 251
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=22.33 E-value=2.1e+02 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=17.2
Q ss_pred CCCCcH--HHHHHHHHHcCCEEEEEec
Q 038817 37 AFPAGI--KALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 37 ~FP~G~--~~l~~~ih~~Glk~Giy~~ 61 (303)
|+|.|. ..+.+.+++.|+++..|.-
T Consensus 134 R~P~G~~~~~~~~~l~~~Gy~~v~w~v 160 (224)
T TIGR02884 134 RPPRGVFSERTLAYTKELGYYTVFWSL 160 (224)
T ss_pred eCCCCCcCHHHHHHHHHcCCcEEeccc
Confidence 457663 4466777888888877764
No 252
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.31 E-value=83 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=23.8
Q ss_pred HHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH
Q 038817 81 DAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL 117 (303)
Q Consensus 81 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~ 117 (303)
.+..+.+-||+++|+|+.........+.....+++|+
T Consensus 161 ~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~ 197 (233)
T PF01136_consen 161 ELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALD 197 (233)
T ss_pred HHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHH
Confidence 3456788899999999998753222333344455554
No 253
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.24 E-value=2.9e+02 Score=20.81 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=36.7
Q ss_pred CCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCcc
Q 038817 28 TGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVD 91 (303)
Q Consensus 28 ~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvd 91 (303)
+|-+.-...-+|+ -..+.++|+++|.++-+-++-.. .-.+..++.+.+.|++
T Consensus 6 dGvl~~g~~~ipg-a~e~l~~L~~~g~~~~~lTNns~-----------~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 6 DGVLYNGNEPIPG-AVEALDALRERGKPVVFLTNNSS-----------RSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTTSEETTEE-TT-HHHHHHHHHHTTSEEEEEES-SS-----------S-HHHHHHHHHHTTTT
T ss_pred ccEeEeCCCcCcC-HHHHHHHHHHcCCCEEEEeCCCC-----------CCHHHHHHHHHhcCcC
Confidence 4555555566774 89999999999999887766421 1235678888999998
No 254
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=22.14 E-value=2.7e+02 Score=23.98 Aligned_cols=26 Identities=38% Similarity=0.719 Sum_probs=22.7
Q ss_pred CCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 36 SAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 36 ~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
.-|| |++.+-+.++++|++.||-+.-
T Consensus 89 ~~~~-gv~e~L~~L~~~g~~l~i~T~k 114 (220)
T COG0546 89 RLFP-GVKELLAALKSAGYKLGIVTNK 114 (220)
T ss_pred ccCC-CHHHHHHHHHhCCCeEEEEeCC
Confidence 4688 4999999999999999998763
No 255
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.72 E-value=77 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.672 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCEEEEEecCC
Q 038817 42 IKALADYVHAKGLKLGIYSDAG 63 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg 63 (303)
|+++.+.|+..|+++|||-..-
T Consensus 130 ~~a~~~~l~~~gY~~GiYg~~~ 151 (212)
T cd06418 130 FRGWNDALHEAGYRIGIYGSRN 151 (212)
T ss_pred HHHHHHHHHhcCCceeEEcChH
Confidence 7888999999999999998764
No 256
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=21.66 E-value=1.7e+02 Score=28.50 Aligned_cols=53 Identities=23% Similarity=0.171 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHcCccEEEeecCCCCC--CCccchhHHHHHHH----HhcCCCeEEEec
Q 038817 76 GHEEQDAKTFASWGVDYLKYDNCFNTG--TSPKERYPIMSKAL----LNSGRPIFFSLC 128 (303)
Q Consensus 76 ~~~~~~~~~~~~wGvdylK~D~~~~~~--~~~~~~y~~~~~al----~~~g~~i~~~~c 128 (303)
+.+...+..++.=|+|+||=|-.-... .+..+|.....+++ +++|+..+|...
T Consensus 160 ~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 160 EEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 344556677788899999999765432 23466777666666 468998777654
No 257
>PLN02905 beta-amylase
Probab=21.61 E-value=91 Score=32.04 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=33.8
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Gi 58 (303)
.||.+|++=|.+|.-|---++..-+.. .| +|-+.|++-|++.|||+=.
T Consensus 294 aLK~aGVdGVmvDVWWGiVE~~gP~~Y-----dW-sgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 294 ILKSINVDGVKVDCWWGIVEAHAPQEY-----NW-NGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred HHHHcCCCEEEEeeeeeeeecCCCCcC-----Cc-HHHHHHHHHHHHcCCeEEE
Confidence 578999999999766644333221111 22 4789999999999999754
No 258
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=21.56 E-value=1.4e+02 Score=28.58 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHcCccEEEeecCCCCC--CCccchhHHHHHHHH----hcCCCeEEEecc
Q 038817 76 GHEEQDAKTFASWGVDYLKYDNCFNTG--TSPKERYPIMSKALL----NSGRPIFFSLCE 129 (303)
Q Consensus 76 ~~~~~~~~~~~~wGvdylK~D~~~~~~--~~~~~~y~~~~~al~----~~g~~i~~~~c~ 129 (303)
+.+...+..++.=|+|+||=|-.-... .+..+|.....++++ ++|+..+|..+.
T Consensus 143 ~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 143 KYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 344556666777899999999765432 234677766666664 689888887543
No 259
>PLN02425 probable fructose-bisphosphate aldolase
Probab=21.52 E-value=2e+02 Score=27.65 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCC--ccchHHHHHHH---HHHcCccEEEeecCCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPG--SLGHEEQDAKT---FASWGVDYLKYDNCFN 100 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg--~~~~~~~~~~~---~~~wGvdylK~D~~~~ 100 (303)
++++++|+++|.-+||=++-|.....+ .++ .-.-++...+. +.+-|..|=|+..+..
T Consensus 122 ~p~~d~L~~~GIVPGIKVDkGl~~l~G-~~~e~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 183 (390)
T PLN02425 122 KKFVDCLRDQNIVPGIKVDKGLVPLPG-SNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVS 183 (390)
T ss_pred cCHHHHHHHCCceeeEEecCCCCcCCC-CCCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 678899999999999999987644322 111 01123444444 4455999999998754
No 260
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=21.51 E-value=1.4e+02 Score=25.36 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=30.4
Q ss_pred chhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 6 LAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 6 l~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
+++.|+++++|=. ..|.-..|+ + ++.-.+.+++.||++|+|.=.
T Consensus 21 ~k~~gi~fviika--------teG~~~~D~-~----~~~n~~~a~~aGl~~G~Yhf~ 64 (194)
T cd06524 21 VKDSPVAFVFIKA--------TEGVDIVDP-D----FPTNWEGAKEAGIIRGAYHFY 64 (194)
T ss_pred hhhcCccEEEEEe--------cCCCCccCh-H----HHHHHHHHHHcCCceEEEEEe
Confidence 5678888888833 124333443 2 566777888999999999753
No 261
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.38 E-value=1.5e+02 Score=28.19 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=40.3
Q ss_pred cchhcCccEEEEcccccCCCCC---CCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCC-ccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPG-SLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d---~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg-~~~~~~ 79 (303)
.|+++|+..|.| |-|+.... ..|+- .++.. ....++.+++.|++ +.+.+.-| .|| +.+..+
T Consensus 105 ~l~~~G~~rvsi--GvqS~~~~~l~~l~r~----~~~~~-~~~~i~~l~~~g~~~v~~dli~G-------lPgqt~~~~~ 170 (377)
T PRK08599 105 VLKDSGVNRISL--GVQTFNDELLKKIGRT----HNEED-VYEAIANAKKAGFDNISIDLIYA-------LPGQTIEDFK 170 (377)
T ss_pred HHHHcCCCEEEE--ecccCCHHHHHHcCCC----CCHHH-HHHHHHHHHHcCCCcEEEeeecC-------CCCCCHHHHH
Confidence 356667776666 66653210 11211 11222 45556666777765 45444333 233 445556
Q ss_pred HHHHHHHHcCccEEEeec
Q 038817 80 QDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~ 97 (303)
.+++.+.+.+++.|.+-.
T Consensus 171 ~~l~~~~~l~~~~i~~y~ 188 (377)
T PRK08599 171 ESLAKALALDIPHYSAYS 188 (377)
T ss_pred HHHHHHHccCCCEEeeec
Confidence 666666677777665543
No 262
>PLN02227 fructose-bisphosphate aldolase I
Probab=21.14 E-value=2e+02 Score=27.77 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCC--ccchHHHHHH---HHHHcCccEEEeecCCC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPG--SLGHEEQDAK---TFASWGVDYLKYDNCFN 100 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg--~~~~~~~~~~---~~~~wGvdylK~D~~~~ 100 (303)
++++++|.++|.-+||=++-|.....++ ++ .-.-++...+ .+.+-|..|=|+..+..
T Consensus 131 ~pf~d~L~~~GIVPGIKVDKGl~~l~g~-~~e~~tqGLDgL~~R~~~Y~~~GarFAKWRsVik 192 (399)
T PLN02227 131 KKMVDVLVEQNIVPGIKVDKGLVPLVGS-YDESWCQGLDGLASRTAAYYQQGARFAKWRTVVS 192 (399)
T ss_pred cCHHHHHHHCCCeeeEEcCCCcccCCCC-CCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 6788999999999999999886543321 22 1112334444 44555999999998754
No 263
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.01 E-value=2.4e+02 Score=26.23 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCC-ccchHHHHHHHHHHcCccEEEeecCCCC-CCC-------------ccc
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPG-SLGHEEQDAKTFASWGVDYLKYDNCFNT-GTS-------------PKE 107 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~-------------~~~ 107 (303)
..-+.+++++|+|+--++--| -|| +..-.-+.++.+++-|||.||+=-+.-- +.+ ..+
T Consensus 171 ~dav~r~rkrgIkvc~HiI~G-------LPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~e 243 (312)
T COG1242 171 VDAVKRLRKRGIKVCTHLING-------LPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLE 243 (312)
T ss_pred HHHHHHHHHcCCeEEEEEeeC-------CCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHH
Confidence 445667888888876665544 465 3444456778899999999999876431 111 233
Q ss_pred hhH-HHHHHHHhcCCCeEEE
Q 038817 108 RYP-IMSKALLNSGRPIFFS 126 (303)
Q Consensus 108 ~y~-~~~~al~~~g~~i~~~ 126 (303)
.|. ...+.|+..-+.|++-
T Consensus 244 eYv~~~~d~le~lpp~vviH 263 (312)
T COG1242 244 EYVELVCDQLEHLPPEVVIH 263 (312)
T ss_pred HHHHHHHHHHHhCCcceEEE
Confidence 343 3456666666666663
No 264
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=20.98 E-value=1.3e+02 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHcCCEEEEEecC
Q 038817 38 FPAGIKALADYVHAKGLKLGIYSDA 62 (303)
Q Consensus 38 FP~G~~~l~~~ih~~Glk~Giy~~p 62 (303)
|| |+..+.++||++|.+.+|=++-
T Consensus 29 ~~-g~~~~l~~Lk~~g~~~~I~Sn~ 52 (147)
T TIGR01656 29 RP-GAVPALLTLRAAGYTVVVVTNQ 52 (147)
T ss_pred cC-ChHHHHHHHHHCCCEEEEEeCC
Confidence 55 6999999999999999996653
No 265
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.93 E-value=1.6e+02 Score=25.98 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHc-CCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEE
Q 038817 43 KALADYVHAK-GLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYL 93 (303)
Q Consensus 43 ~~l~~~ih~~-Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyl 93 (303)
+.+++.+|+. |++..+|+--. ...++.+.+||++.|
T Consensus 198 ~~~v~~~~~~~G~~v~vWTVnd---------------~~~~~~l~~~G~~~i 234 (237)
T cd08585 198 NPFVTLARALLGMPVIVWTVRT---------------EEDIARLKQYADNII 234 (237)
T ss_pred CHHHHHHHHhcCCcEEEEeCCC---------------HHHHHHHHHhCCeeE
Confidence 4689999999 99999998421 346778888998754
No 266
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=20.91 E-value=4.3e+02 Score=25.61 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHH----
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALL---- 117 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~---- 117 (303)
-+.+..+++++|.+.|++++.- .| ..|+ +-..+++-|+-|+|+-..+.+..+-.+....+..+++
T Consensus 50 ~~dl~~~l~~~~~~vgl~iDlt--nt-------~ryy--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~ 118 (393)
T KOG2386|consen 50 PKDLFELLKEHNYKVGLKIDLT--NT-------LRYY--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVD 118 (393)
T ss_pred HHHHHHHHHhcCceEEEEEecc--ce-------eeee--ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHh
Confidence 5899999999999999999863 22 2233 1223567799999998887764332222233333332
Q ss_pred --hcCCCeEEEeccCCC
Q 038817 118 --NSGRPIFFSLCEWGR 132 (303)
Q Consensus 118 --~~g~~i~~~~c~~g~ 132 (303)
+.-..+++..|.-|.
T Consensus 119 ~~~~~~~LI~vhcthG~ 135 (393)
T KOG2386|consen 119 DTKLDDELIGVHCTHGL 135 (393)
T ss_pred cccCCCCEEEEeCCCcc
Confidence 123457777786443
No 267
>PRK06256 biotin synthase; Validated
Probab=20.89 E-value=2.8e+02 Score=25.66 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=51.2
Q ss_pred ccchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHH
Q 038817 4 SGLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAK 83 (303)
Q Consensus 4 ~gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~ 83 (303)
+.|+++|++.+.+ +-++ ...-.-.+.+. ..|-+ .....+.+|+.|++++...-.| ...+.+.....++
T Consensus 156 ~~LkeaG~~~v~~--~lEt-s~~~~~~i~~~-~t~~~-~i~~i~~a~~~Gi~v~~~~I~G-------lgEt~ed~~~~~~ 223 (336)
T PRK06256 156 ERLKEAGVDRYNH--NLET-SRSYFPNVVTT-HTYED-RIDTCEMVKAAGIEPCSGGIIG-------MGESLEDRVEHAF 223 (336)
T ss_pred HHHHHhCCCEEec--CCcc-CHHHHhhcCCC-CCHHH-HHHHHHHHHHcCCeeccCeEEe-------CCCCHHHHHHHHH
Confidence 4578899988876 3333 11111112111 12222 4567778889998876655444 2235556667777
Q ss_pred HHHHcCccEEEeecCCC
Q 038817 84 TFASWGVDYLKYDNCFN 100 (303)
Q Consensus 84 ~~~~wGvdylK~D~~~~ 100 (303)
.+++.+++.+-+-+..+
T Consensus 224 ~l~~l~~~~v~i~~l~P 240 (336)
T PRK06256 224 FLKELDADSIPINFLNP 240 (336)
T ss_pred HHHhCCCCEEeeccccc
Confidence 88899999988877643
No 268
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=20.88 E-value=5.6e+02 Score=22.23 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCC---ccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHh
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPG---SLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLN 118 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg---~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~ 118 (303)
++.+.+.+|+.|+++=|..... +-|.| +..-++..++...+-|.||||..+.. ....+.+..+.
T Consensus 111 i~~v~~~~~~~g~~~iie~~~~-----g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--------~~~~~~~i~~~ 177 (235)
T cd00958 111 LARVAAEAHKYGLPLIAWMYPR-----GPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--------DAESFKEVVEG 177 (235)
T ss_pred HHHHHHHHHHcCCCEEEEEecc-----CCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--------CHHHHHHHHhc
Confidence 5666666677777765532221 11211 11122333555778899999995421 23344444445
Q ss_pred cCCCeEEE
Q 038817 119 SGRPIFFS 126 (303)
Q Consensus 119 ~g~~i~~~ 126 (303)
...|++.+
T Consensus 178 ~~~pvv~~ 185 (235)
T cd00958 178 CPVPVVIA 185 (235)
T ss_pred CCCCEEEe
Confidence 56676544
No 269
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=20.80 E-value=76 Score=27.27 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHHHHHHHHHc-CCEEEEEecCC
Q 038817 42 IKALADYVHAK-GLKLGIYSDAG 63 (303)
Q Consensus 42 ~~~l~~~ih~~-Glk~Giy~~pg 63 (303)
++++++.++++ |.+++||+.+-
T Consensus 116 ~~~f~~~v~~~~G~~~~iY~~~~ 138 (199)
T cd06412 116 IKDFSDTYKARTGRDPVIYTTTS 138 (199)
T ss_pred HHHHHHHHHHHHCCCcEEEecHH
Confidence 57888999986 99999999863
No 270
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=20.70 E-value=1.4e+02 Score=29.94 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=32.7
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCc-----ccCCCCCC--CcHHHHHHHHHHcCCEEEE
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNF-----VPKASAFP--AGIKALADYVHAKGLKLGI 58 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~-----~~~~~~FP--~G~~~l~~~ih~~Glk~Gi 58 (303)
.|+++|++.|.|=--.... ....|.. .+|+ +|- ..++.|++.+|++|+|+=+
T Consensus 36 yl~~LGv~~i~L~Pi~~~~-~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 36 YLKWLGVDALWLLPFFQSP-LRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred HHHHCCCCEEEECCCcCCC-CCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEE
Confidence 4788999999873322221 1112333 3443 452 2489999999999999764
No 271
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.59 E-value=3.8e+02 Score=25.50 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=54.7
Q ss_pred cccchhcCccEEEEccc--cc---------CCCCCCCCCcccCCCCCCCcHHHHHHHHHHc-CC-EEEEEecCCCcccCC
Q 038817 3 TSGLAALGYQYINLDDC--WA---------ELNRDSTGNFVPKASAFPAGIKALADYVHAK-GL-KLGIYSDAGTQTCSK 69 (303)
Q Consensus 3 ~~gl~~~Gy~~v~iDdg--W~---------~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~-Gl-k~Giy~~pg~~~c~~ 69 (303)
++..+++||+-|.|-.+ |- ....|++|--.-|..|| +..+++.|++. |= .+|+=+++....+.
T Consensus 165 A~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf---~~Eiv~aVr~~vg~~~igvRis~~~~~~~- 240 (362)
T PRK10605 165 IANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARL---VLEVVDAGIAEWGADRIGIRISPLGTFNN- 240 (362)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHH---HHHHHHHHHHHcCCCeEEEEECCcccccc-
Confidence 35678899999999653 21 11236777766777888 46777777774 21 36776665321111
Q ss_pred CCCCccch---HHHHHHHHHHcCccEEEee
Q 038817 70 TMPGSLGH---EEQDAKTFASWGVDYLKYD 96 (303)
Q Consensus 70 ~~pg~~~~---~~~~~~~~~~wGvdylK~D 96 (303)
.++...- ....++.+.+.|+|||-+-
T Consensus 241 -~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 241 -VDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred -CCCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 1221221 2456778889999999875
No 272
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=20.40 E-value=2.1e+02 Score=23.69 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCEEEEEe-cCCCc--ccCCCCCCccchHHHHHHHHHHcCccE-EEeecCC
Q 038817 42 IKALADYVHAKGLKLGIYS-DAGTQ--TCSKTMPGSLGHEEQDAKTFASWGVDY-LKYDNCF 99 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~-~pg~~--~c~~~~pg~~~~~~~~~~~~~~wGvdy-lK~D~~~ 99 (303)
++.+.+..+++|++..+.+ .|-+. ......|...--.++-.+.++++|||| +-+||..
T Consensus 25 i~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~ 86 (157)
T PF06574_consen 25 IKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTE 86 (157)
T ss_dssp HHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCC
T ss_pred HHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchH
Confidence 3566666778899988755 43221 111112333444566788899999998 5888874
No 273
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=20.38 E-value=1.5e+02 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHHcCCEEEEEec
Q 038817 40 AGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 40 ~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
.|+..+.++|+++|+++||=++
T Consensus 45 pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 45 PEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred CCHHHHHHHHHHCCCEEEEEeC
Confidence 3699999999999999999776
No 274
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.38 E-value=4.7e+02 Score=24.29 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=60.5
Q ss_pred cchhcCccEEEEcccccCCCCCCCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCCccchHHHHHH
Q 038817 5 GLAALGYQYINLDDCWAELNRDSTGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPGSLGHEEQDAK 83 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg~~~~~~~~~~ 83 (303)
-+.+.|+.+|.+|...... +......+-+ .|.+.++++|.++|.| +|+...+. ..+-+...++...+
T Consensus 132 ~l~~~~~P~V~i~~~~~~~-----~~~~V~~Dn~-~~~~~a~~~L~~~G~~~i~~i~~~~------~~~~~~~R~~Gf~~ 199 (333)
T COG1609 132 LLAAAGIPVVVIDRSPPGL-----GVPSVGIDNF-AGAYLATEHLIELGHRRIAFIGGPL------DSSASRERLEGYRA 199 (333)
T ss_pred HHHhcCCCEEEEeCCCccC-----CCCEEEEChH-HHHHHHHHHHHHCCCceEEEEeCCC------ccccHhHHHHHHHH
Confidence 4566788888887654421 1111121122 3789999999999987 77666553 13334666777888
Q ss_pred HHHHcCccEEEeecCCCCCCCccchhHHHHHHHHhc
Q 038817 84 TFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNS 119 (303)
Q Consensus 84 ~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~~ 119 (303)
.+++-|+.+. -..+..+..+....+..+.+.|...
T Consensus 200 al~~~~~~~~-~~~i~~~~~~~~~g~~~~~~ll~~~ 234 (333)
T COG1609 200 ALREAGLPIN-PEWIVEGDFSEESGYEAAERLLARG 234 (333)
T ss_pred HHHHCCCCCC-cceEEecCCChHHHHHHHHHHHhcC
Confidence 8899888753 1222222234455666666666543
No 275
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=20.36 E-value=1.7e+02 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHHcCCEEEEEec
Q 038817 37 AFPAGIKALADYVHAKGLKLGIYSD 61 (303)
Q Consensus 37 ~FP~G~~~l~~~ih~~Glk~Giy~~ 61 (303)
-|| |+..+.++|+++|++.+|=++
T Consensus 30 ~~p-gv~e~L~~Lk~~g~~l~I~Tn 53 (181)
T PRK08942 30 PIP-GSIEAIARLKQAGYRVVVATN 53 (181)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEeC
Confidence 344 699999999999999999664
No 276
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.17 E-value=1.7e+02 Score=28.22 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=46.8
Q ss_pred cchhcCccEEEEcccccCCCCC---CCCCcccCCCCCCCcHHHHHHHHHHcCCE-EEEEecCCCcccCCCCCC-ccchHH
Q 038817 5 GLAALGYQYINLDDCWAELNRD---STGNFVPKASAFPAGIKALADYVHAKGLK-LGIYSDAGTQTCSKTMPG-SLGHEE 79 (303)
Q Consensus 5 gl~~~Gy~~v~iDdgW~~~~~d---~~G~~~~~~~~FP~G~~~l~~~ih~~Glk-~Giy~~pg~~~c~~~~pg-~~~~~~ 79 (303)
.|+++|++.|.| |-|+..-. ..|+- .+..+ ....++.+++.|++ +.+.+.-| .|| +.+...
T Consensus 120 ~l~~~Gvnrisl--GvQS~~d~~L~~l~R~----~~~~~-~~~ai~~l~~~G~~~v~~dlI~G-------lPgqt~e~~~ 185 (400)
T PRK07379 120 GYRSLGVNRVSL--GVQAFQDELLALCGRS----HRVKD-IFAAVDLIHQAGIENFSLDLISG-------LPHQTLEDWQ 185 (400)
T ss_pred HHHHCCCCEEEE--EcccCCHHHHHHhCCC----CCHHH-HHHHHHHHHHcCCCeEEEEeecC-------CCCCCHHHHH
Confidence 466777777777 77764210 12221 01111 45556677777876 77666554 344 556667
Q ss_pred HHHHHHHHcCccEEEeec
Q 038817 80 QDAKTFASWGVDYLKYDN 97 (303)
Q Consensus 80 ~~~~~~~~wGvdylK~D~ 97 (303)
.+++.+.+.+.+.|.+=.
T Consensus 186 ~tl~~~~~l~p~~is~y~ 203 (400)
T PRK07379 186 ASLEAAIALNPTHLSCYD 203 (400)
T ss_pred HHHHHHHcCCCCEEEEec
Confidence 777777777777776543
No 277
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.12 E-value=66 Score=25.94 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=42.5
Q ss_pred ccccchhcCccEEEEcccccCCC------CCCCCCcc----cCCCCCCCcHHHHHHHHHHcCC-EEEEEecCCCcccCCC
Q 038817 2 VTSGLAALGYQYINLDDCWAELN------RDSTGNFV----PKASAFPAGIKALADYVHAKGL-KLGIYSDAGTQTCSKT 70 (303)
Q Consensus 2 ~~~gl~~~Gy~~v~iDdgW~~~~------~d~~G~~~----~~~~~FP~G~~~l~~~ih~~Gl-k~Giy~~pg~~~c~~~ 70 (303)
++.-|+..||+++.+ ...+..+ .....+.+ -+.+..+ -|+.+++.|+++|. .+-++. ++.
T Consensus 22 v~~~l~~~GfeVi~l-g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~-~~~~~~~~L~~~g~~~i~viv-------GG~ 92 (132)
T TIGR00640 22 IATAYADLGFDVDVG-PLFQTPEEIARQAVEADVHVVGVSSLAGGHLT-LVPALRKELDKLGRPDILVVV-------GGV 92 (132)
T ss_pred HHHHHHhCCcEEEEC-CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHH-HHHHHHHHHHhcCCCCCEEEE-------eCC
Confidence 455688899998888 3344421 01111111 1222333 48999999999987 333333 121
Q ss_pred CCCccchHHHHHHHHHHcCcc
Q 038817 71 MPGSLGHEEQDAKTFASWGVD 91 (303)
Q Consensus 71 ~pg~~~~~~~~~~~~~~wGvd 91 (303)
.| +.+.+.+.+.|||
T Consensus 93 ~~------~~~~~~l~~~Gvd 107 (132)
T TIGR00640 93 IP------PQDFDELKEMGVA 107 (132)
T ss_pred CC------hHhHHHHHHCCCC
Confidence 22 4456678888986
No 278
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=20.12 E-value=2.1e+02 Score=24.48 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecC
Q 038817 43 KALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNC 98 (303)
Q Consensus 43 ~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 98 (303)
..+++.+|++|++.-.|+--- +. ...++.+.++|||.|=-|+.
T Consensus 212 ~~~v~~~~~~g~~v~~wtvn~--------~~-----~~~~~~l~~~gvdgIiTD~P 254 (256)
T PF03009_consen 212 PRLVQEAHKAGLKVYVWTVND--------PD-----VEDMKRLLDLGVDGIITDFP 254 (256)
T ss_dssp HHHHHHHHHTT-EEEEBSB-S--------HS-----HHHHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHHHCCCEEEEEecCC--------cH-----HHHHHHHHhCCCCEEEEcCC
Confidence 469999999999998886431 11 45678889999999988863
No 279
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.07 E-value=6.3e+02 Score=22.57 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCcccCCCCCCccchHHHHHHHHHHcCccEEEeecCCCCCCCccchhHHHHHHHHh
Q 038817 42 IKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLN 118 (303)
Q Consensus 42 ~~~l~~~ih~~Glk~Giy~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~~~~al~~ 118 (303)
++..+++++++|+++-+ .|.....-+.+++...++.+.+.|++-|-+ |...+.-.......+.++|++
T Consensus 116 ~~~~i~~a~~~G~~v~~-------~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l--~DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 116 AVEAVEYAKSHGLDVEF-------SAEDATRTDLDFLIEVVEAAIEAGATTINI--PDTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred HHHHHHHHHHcCCeEEE-------eeecCCCCCHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCHHHHHHHHHHHHH
Confidence 56788899999988663 222111235678888999999999986543 333333333444445555554
No 280
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=20.03 E-value=2.2e+02 Score=27.98 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHcCccEEEeecCCCCCC---------CccchhHHH----HHHHHh----cCCCeEEEec
Q 038817 75 LGHEEQDAKTFASWGVDYLKYDNCFNTGT---------SPKERYPIM----SKALLN----SGRPIFFSLC 128 (303)
Q Consensus 75 ~~~~~~~~~~~~~wGvdylK~D~~~~~~~---------~~~~~y~~~----~~al~~----~g~~i~~~~c 128 (303)
..+.+..++.++.|+||.|-+|+=++++. ...+.|..+ |++|.+ .||...+++-
T Consensus 153 e~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA 223 (441)
T COG3325 153 ENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIA 223 (441)
T ss_pred HHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEe
Confidence 45668888999999999999999876421 234556554 444543 3566666653
Done!