BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038818
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/496 (41%), Positives = 306/496 (61%), Gaps = 34/496 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EFRR+G ++D++A+Y +E V VEPGYLR +P +AP P+ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFL--FSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR ++++ + + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + +F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT + D L GP+C+ + IW+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICN---KEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A +P +L++ DS + DY+ WQI
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N++N LL+ IN++ ++++ + + +RFA+ + E H
Sbjct: 413 L-------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ ++E +L
Sbjct: 460 VQRAWEHIKELAADVL 475
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/496 (41%), Positives = 305/496 (61%), Gaps = 34/496 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EFRR+G ++D++A+Y +E V VEPGYLR +P +AP P+ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFL--FSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR ++++ + + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + +F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT + D L GP+C+ + IW+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICN---KEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N H W DC +WVK L A +P +L++ DS + DY+ WQI
Sbjct: 293 FADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N++N LL+ IN++ ++++ + + +RFA+ + E H
Sbjct: 413 L-------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ ++E +L
Sbjct: 460 VQRAWEHIKELAADVL 475
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/489 (40%), Positives = 297/489 (60%), Gaps = 34/489 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ +FRR+G ++D++ADY +E V V+PGYLR +P +AP P+ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLFSGTGGG--VIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL G G VIQG+ EA L L AAR +++ + + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT+ + D L GP+C IW+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPIC---HEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A +P +L++ S + DY+ WQ+
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ V D RFE+ A +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G++ LN LLE IN++ ++++ + G + +RFA+ + E H
Sbjct: 413 L-------------KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGH 459
Query: 468 VIAAWKVVQ 476
V AW+ ++
Sbjct: 460 VRLAWEHIR 468
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/495 (41%), Positives = 288/495 (58%), Gaps = 31/495 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M+ EE+R +G ++D+I Y V + V V+PGYLR +LPESAP +P+ ++I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+ HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE VMD
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMD 125
Query: 121 WLGEMLKLPKSFLF---SGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI------- 170
WL +ML LP+ FL S GGGV+Q T E+ L L AAR + E+
Sbjct: 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185
Query: 171 -SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229
+RLV Y SDQ HS+++KA I+ + K +F+L E+LQ AI+ D Q GL
Sbjct: 186 NARLVAYASDQAHSSVEKAGLISLVKMKFLPV-----DDNFSLRGEALQKAIEEDKQRGL 240
Query: 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA 289
+P+F+CAT+GTT + D L L I R +W+H+DAAYAG+A +CPEFR F+ GIE A
Sbjct: 241 VPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYA 300
Query: 290 DSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349
DSF+ N KW DC WVK+ L + S NP +LR+ ++S D+ WQI LS
Sbjct: 301 DSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIPLS 358
Query: 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVL 409
RRFR++KLW V+RSFGV NL+ +R MA+ F+ LV D FEI A R+ +V FR+
Sbjct: 359 RRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRL- 417
Query: 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469
+G N L +L+ I +G+L++ + IRF V + T ++
Sbjct: 418 ------------KGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDIL 465
Query: 470 AAWKVVQEKLDGILA 484
W ++++ IL+
Sbjct: 466 RDWNLIRDAATLILS 480
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/490 (38%), Positives = 293/490 (59%), Gaps = 31/490 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EF+ ++DFIA+Y ++ + VL +V+PGYL+ +P++AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SP + AYFP++ S + +MLS +GF W++SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 121 WLGEMLKLPKSFLFSG--TGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP FL GGGVIQGT E+ L L A+ + L E+ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A + G+ +++ +S + + +L+ AI+ D+ GLI
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVK------LRSVQSENHRMRGAALEKAIEQDVAEGLI 234
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P + T+GTT D L + ++++W+HVDAAYAGSA ICPE+RH + GIE AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
SF+ N H W DC +W+K+P+ ++ A + +P +L++ S DY+ WQI L R
Sbjct: 295 SFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP--DYRHWQIPLGR 352
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RFRALKLW VLR +GV NL+ +R H A+ F +L D+RFE+ A N +VCFR+
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL-- 410
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
+G+NE N LL+ IN G +++ + +YF+R A+ + T+ +
Sbjct: 411 -----------KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEY 459
Query: 471 AWKVVQEKLD 480
+WK V D
Sbjct: 460 SWKEVSAAAD 469
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 161/369 (43%), Gaps = 13/369 (3%)
Query: 49 NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSS 108
+PE +E IL D + + G+ P +F + I G GE L+S N F + +
Sbjct: 72 HPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIA 130
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI--- 165
P +E I + + E++ S G G+ + + ++ AAR + E+
Sbjct: 131 PVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK 185
Query: 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225
G + +LV++ S+Q+H +++KA G N IK + + P +A I
Sbjct: 186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAK 243
Query: 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG 285
Q G +P ++ AT GTT DP+ + DI ++Y++W+HVDAA+ G + + RH ++G
Sbjct: 244 QKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 303
Query: 286 IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345
IE A+S + N H L C + VK L + +L + D D
Sbjct: 304 IERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA 363
Query: 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAV 403
I R K WL+ ++ G N + + +A+ + FE+V
Sbjct: 364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 423
Query: 404 VCFRVLPSA 412
VCF +P +
Sbjct: 424 VCFWYIPQS 432
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 159/369 (43%), Gaps = 13/369 (3%)
Query: 49 NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSS 108
+PE +E IL D + + G+ P +F + I G GE L+S N F + +
Sbjct: 69 HPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIA 127
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI--- 165
P +E I + + E++ S G G+ + + ++ AAR + E+
Sbjct: 128 PVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK 182
Query: 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225
G + +LV++ S+Q+H +++KA G N IK + + P +A I
Sbjct: 183 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAK 240
Query: 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG 285
Q G +P ++ AT GTT DP+ + DI ++Y++W+HVDAA+ G + + RH ++G
Sbjct: 241 QKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 300
Query: 286 IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345
IE A+S + N H L C + VK L +L D D
Sbjct: 301 IERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360
Query: 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAV 403
I R K WL+ ++ G N + + +A+ + FE+V
Sbjct: 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 420
Query: 404 VCFRVLPSA 412
VCF +P +
Sbjct: 421 VCFWYIPQS 429
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 150/341 (43%), Gaps = 13/341 (3%)
Query: 74 PYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFL 133
P +F S G +++ N + + +P +E E+L+ ++ +
Sbjct: 109 PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEE-------EVLRKLRALV 161
Query: 134 FSGTGGGVI--QGTTCEAILCTLAA-ARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190
+G G+ G+ LA R + G + L ++ S + H ++QK A
Sbjct: 162 GWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA 221
Query: 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLG 250
G+ + R +K + + PE L+ I + G +P + AT GTT + DPL
Sbjct: 222 FLGLGTDSVRVVKADERGK--MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLE 279
Query: 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310
+ D+ +R+ +W+HVDAA+ GS + RH +DGI+ ADS + N HK L C L
Sbjct: 280 AIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339
Query: 311 VKNPNALIKAL-STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANL 369
+++ + L+K + +L + +D D + RR LKLWL+ ++ G L
Sbjct: 340 LQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGL 399
Query: 370 RNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
+ +A+ E + FE+V F VCF +P
Sbjct: 400 ERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVP 440
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 14/377 (3%)
Query: 49 NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSS 108
P+ +E IL Q + I P YF + + G + L+S N F + +
Sbjct: 65 QPQNLEEILMHCQTTLKYAIKTGH-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIA 123
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI--- 165
P LE + + + E++ P G+G G+ + + + AR ++ E+
Sbjct: 124 PVFVLLEYVTLKKMREIIGWP-----GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEK 178
Query: 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225
G + RL+ + S+ +H +L+K A GI + IK + + P L+ I
Sbjct: 179 GMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGK--MIPSDLERRILEAK 236
Query: 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG 285
Q G +P + AT GTT DPL + DI K+Y IW+HVDAA+ G + + + + G
Sbjct: 237 QKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSG 296
Query: 286 IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345
+E A+S + N H L C L V+ + + +L + D D
Sbjct: 297 VERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKA 356
Query: 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV---APRNFA 402
+ R KLWL+ R+ G + + +A+ ++ +E+V P++
Sbjct: 357 LQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTN 416
Query: 403 VVCFRVLPSASGLGDGK 419
V + + PS L D +
Sbjct: 417 VCFWYIPPSLRTLEDNE 433
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 175/416 (42%), Gaps = 31/416 (7%)
Query: 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAA 111
P+++++ DV + + Q P A+ + E + N +W + +A
Sbjct: 79 PLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSA 138
Query: 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI- 170
T +E V++WL + L S G+ ++ L ARD I +++ +I
Sbjct: 139 TYVEQKVVNWLCDKYDL------SEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQ 192
Query: 171 --------SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAID 222
+L + S ++H +QK+A G+ K + + +T L I
Sbjct: 193 KLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDIT--KLDEVIA 250
Query: 223 LDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF 282
GLIP + T GTT +D L + D A ++ W HVD AY G A I +
Sbjct: 251 QAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSR 309
Query: 283 IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342
+ G+E A S S++ HK F+ T+ C L V N + K L + ++L + + +VD
Sbjct: 310 LKGVERAHSISVDFHKLFYQTISCGALLV-NDKSNFKFLLHHADYLNREHDELPNLVDK- 367
Query: 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402
I ++RF ALK++ ++ G L + + + + +++FE++A + +
Sbjct: 368 --SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLS 425
Query: 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAV 458
V FR + L +ELN+ L G + +V G ++F +
Sbjct: 426 TVLFRATHETADL---------DELNKALRLEALTRGIAVLGETIVDGKTALKFTI 472
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 207 SSSFTLTPESLQAAI-DLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265
+T+ + ++ A+ D D+ + GTT + T+D + L IAK +I++HV
Sbjct: 153 KEDYTIDEKFVKDAVEDYDVDG------IIGIAGTTELGTIDNIEELSKIAKENNIYIHV 206
Query: 266 DAAYAGSACICPEFRHFIDGIE-------GADSFSLNAHK 298
DAA+ G + ++ G+ G DS +++ HK
Sbjct: 207 DAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHK 246
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 115/309 (37%), Gaps = 55/309 (17%)
Query: 31 SQVEPGYLRKRLPESA--PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAG 88
SQ++P R R P A P P IL ++ W+ Y +SG++
Sbjct: 60 SQIKP--YRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGY------ASGAV-- 109
Query: 89 FLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146
+ G+ F V S+P +L + E++ + L GG + GT
Sbjct: 110 YHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV 169
Query: 147 C----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202
E++L + RD G +V + H+A KAAQ GI + +
Sbjct: 170 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAAQYFGI-----KLV 221
Query: 203 KTTKSSSFTLTPESLQAAIDLD--IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260
+T + + +++ AI + + AG P + V DP+ + +A +
Sbjct: 222 RTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV--------DPIPEIAALAAEHG 273
Query: 261 IWVHVDAAYAGSACICP------------EFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308
I HVDA G I P +FR +EG S S + HK+ +
Sbjct: 274 IGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVSADTHKYGYGAKGTSV 326
Query: 309 LWVKNPNAL 317
+ + P+ L
Sbjct: 327 ILYRRPDLL 335
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 113/307 (36%), Gaps = 51/307 (16%)
Query: 31 SQVEPGYLRKRLPESA--PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAG 88
SQ++P R R P A P P IL ++ W+ Y +SG++
Sbjct: 56 SQIKP--YRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGY------ASGAV-- 105
Query: 89 FLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146
+ G+ F V S+P +L + E++ + L GG + GT
Sbjct: 106 YHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV 165
Query: 147 C----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202
E++L + RD G +V + H+A KAAQ GI + +
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAAQYFGI-----KLV 217
Query: 203 KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262
+T + + +++ AI + + + + VDP+ + +A + I
Sbjct: 218 RTPLDADYRADVAAMREAITPNT------VVVAGSAPGXPHGVVDPIPEIAALAAEHGIG 271
Query: 263 VHVDAAYAGSACICP------------EFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310
HVDA G I P +FR +EG S S + HK+ + +
Sbjct: 272 CHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVSADTHKYGYGAKGTSVIL 324
Query: 311 VKNPNAL 317
+ P+ L
Sbjct: 325 YRRPDLL 331
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 114/309 (36%), Gaps = 55/309 (17%)
Query: 31 SQVEPGYLRKRLPESA--PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAG 88
SQ++P R R P A P P IL ++ W+ Y +SG++
Sbjct: 60 SQIKP--YRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGY------ASGAV-- 109
Query: 89 FLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146
+ G+ F V S+P +L + E++ + L GG + GT
Sbjct: 110 YHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV 169
Query: 147 C----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202
E++L + RD G +V + H+A KAAQ GI + +
Sbjct: 170 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAAQYFGI-----KLV 221
Query: 203 KTTKSSSFTLTPESLQAAIDLD--IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260
+T + + +++ AI + + AG P + V DP+ + +A +
Sbjct: 222 RTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV--------DPIPEIAALAAEHG 273
Query: 261 IWVHVDAAYAGSACICP------------EFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308
I HVDA G I P +FR +EG S S + H + +
Sbjct: 274 IGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVSADTHXYGYGAKGTSV 326
Query: 309 LWVKNPNAL 317
+ + P+ L
Sbjct: 327 ILYRRPDLL 335
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 114/309 (36%), Gaps = 55/309 (17%)
Query: 31 SQVEPGYLRKRLPESA--PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAG 88
SQ++P R R P A P P IL ++ W+ Y +SG++
Sbjct: 56 SQIKP--YRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGY------ASGAV-- 105
Query: 89 FLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146
+ G+ F V S+P +L + E++ + L GG + GT
Sbjct: 106 YHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV 165
Query: 147 C----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202
E++L + RD G +V + H+A KAAQ GI + +
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAAQYFGI-----KLV 217
Query: 203 KTTKSSSFTLTPESLQAAIDLD--IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260
+T + + +++ AI + + AG P + V DP+ + +A +
Sbjct: 218 RTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV--------DPIPEIAALAAEHG 269
Query: 261 IWVHVDAAYAGSACICP------------EFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308
I HVDA G I P +FR +EG S S + H + +
Sbjct: 270 IGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVSADTHAYGYGAKGTSV 322
Query: 309 LWVKNPNAL 317
+ + P+ L
Sbjct: 323 ILYRRPDLL 331
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 114/309 (36%), Gaps = 55/309 (17%)
Query: 31 SQVEPGYLRKRLPESA--PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAG 88
SQ++P R R P A P P IL ++ W+ Y +SG++
Sbjct: 56 SQIKP--YRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGY------ASGAV-- 105
Query: 89 FLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146
+ G+ F V S+P +L + E++ + L GG + GT
Sbjct: 106 YHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV 165
Query: 147 C----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202
E++L + RD G +V + H+A KAAQ GI + +
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAAQYFGI-----KLV 217
Query: 203 KTTKSSSFTLTPESLQAAIDLD--IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260
+T + + +++ AI + + AG P + V DP+ + +A +
Sbjct: 218 RTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV--------DPIPEIAALAAEHG 269
Query: 261 IWVHVDAAYAGSACICP------------EFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308
I HVDA G I P +FR +EG S S + H + +
Sbjct: 270 IGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVSADTHXYGYGAKGTSV 322
Query: 309 LWVKNPNAL 317
+ + P+ L
Sbjct: 323 ILYRRPDLL 331
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 212 LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267
TP+ ++ A+ + P L G T+ T + PL L +I +RY + DA
Sbjct: 125 FTPDQVEDAVKR-----IRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA 175
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 221 IDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF- 279
+D + +I + CA T T D +CD+ KR + VD AY G A ++
Sbjct: 177 LDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYD 236
Query: 280 ----RHFIDGIEG---ADSFSLN 295
RH +D + A SFS N
Sbjct: 237 AFVPRHLVDMVPNLIVAQSFSXN 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,502,539
Number of Sequences: 62578
Number of extensions: 601816
Number of successful extensions: 1325
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 19
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)