BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038821
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
          Length = 339

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 63  KREIELENESVCLR---------SKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFF 113
           KRE  LE E V LR         + V   +     +   A TV G+E + + A     + 
Sbjct: 26  KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWL 85

Query: 114 SPAIIEGGGT 123
            PA+ E  GT
Sbjct: 86  LPALQEDSGT 95


>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Citrate
 pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Citrate
 pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Sn-G1p And Mpd
 pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Sn-G1p And Mpd
          Length = 234

 Score = 25.8 bits (55), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 59  EFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFS-PAI 117
           E LQK    +E+E + +   +  +  S + R  +A     +EL+A +AL     F+ P I
Sbjct: 108 ENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPII 167

Query: 118 -IEGGGTAYSHPD-----KKIL 133
            IE  GT Y +P+     KK+L
Sbjct: 168 YIEYSGT-YGNPELVAEVKKVL 188


>pdb|1WGS|A Chain A, Solution Structure Of The Tudor Domain From Mouse
           Hypothetical Protein Homologous To Histone
           Acetyltransferase
          Length = 133

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 22  DSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCL 75
           D++   + K L +L  + ER ITR + +KH+    EI  +QK   E++  +  L
Sbjct: 75  DAVQKNSEKYLSELAEQPERKITRNQKRKHD----EINHVQKTYAEMDPTTAAL 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,349,248
Number of Sequences: 62578
Number of extensions: 106971
Number of successful extensions: 256
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)