Query 038821
Match_columns 136
No_of_seqs 186 out of 1272
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 2.7E-22 5.8E-27 140.5 9.4 79 1-79 20-98 (100)
2 PF06005 DUF904: Protein of un 95.7 0.17 3.7E-06 33.6 8.5 48 27-79 1-48 (72)
3 KOG0014 MADS box transcription 94.9 0.0068 1.5E-07 45.9 -0.1 64 5-68 119-187 (195)
4 PF06156 DUF972: Protein of un 91.6 2 4.3E-05 30.5 8.1 46 29-79 7-52 (107)
5 PRK15422 septal ring assembly 91.3 1.6 3.4E-05 29.6 6.9 43 27-74 1-43 (79)
6 COG3074 Uncharacterized protei 90.3 3.7 8.1E-05 27.4 7.8 48 27-79 1-48 (79)
7 PF06698 DUF1192: Protein of u 87.3 1.1 2.4E-05 28.7 3.7 30 18-47 12-41 (59)
8 cd07429 Cby_like Chibby, a nuc 84.1 2 4.3E-05 30.7 4.1 25 55-79 71-95 (108)
9 PF01166 TSC22: TSC-22/dip/bun 82.3 3.5 7.5E-05 26.4 4.2 28 52-79 17-44 (59)
10 PRK13169 DNA replication intia 79.9 17 0.00036 26.0 7.6 46 29-79 7-52 (110)
11 PF00170 bZIP_1: bZIP transcri 79.6 13 0.00027 23.4 6.3 34 42-79 16-49 (64)
12 PRK10884 SH3 domain-containing 77.8 32 0.0007 27.0 9.8 18 3-20 96-113 (206)
13 smart00338 BRLZ basic region l 77.7 14 0.00031 23.1 6.2 35 41-79 15-49 (65)
14 COG2433 Uncharacterized conser 76.3 45 0.00098 30.6 10.8 68 3-79 432-504 (652)
15 PF07106 TBPIP: Tat binding pr 72.1 20 0.00042 26.7 6.6 46 4-50 120-165 (169)
16 PF07716 bZIP_2: Basic region 70.8 21 0.00046 21.7 6.3 35 41-79 14-48 (54)
17 KOG4797 Transcriptional regula 68.2 27 0.00058 25.2 6.1 45 34-78 45-89 (123)
18 KOG1962 B-cell receptor-associ 65.2 48 0.001 26.5 7.7 73 7-79 134-209 (216)
19 smart00787 Spc7 Spc7 kinetocho 64.5 83 0.0018 26.2 10.4 76 4-79 176-255 (312)
20 PF08317 Spc7: Spc7 kinetochor 59.3 1E+02 0.0022 25.5 11.3 75 5-79 182-260 (325)
21 PF06156 DUF972: Protein of un 57.9 58 0.0013 23.0 6.4 38 41-79 8-45 (107)
22 KOG4797 Transcriptional regula 57.8 20 0.00044 25.9 4.0 33 46-79 65-97 (123)
23 COG4467 Regulator of replicati 56.3 73 0.0016 22.9 6.8 46 29-79 7-52 (114)
24 PF14645 Chibby: Chibby family 56.0 22 0.00048 25.5 4.0 25 55-79 70-94 (116)
25 PF04977 DivIC: Septum formati 53.6 34 0.00075 21.6 4.4 27 53-79 21-47 (80)
26 PF15254 CCDC14: Coiled-coil d 52.4 1.4E+02 0.0031 28.4 9.4 51 24-79 427-478 (861)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.9 90 0.002 22.4 7.9 28 52-79 101-128 (132)
28 PF02151 UVR: UvrB/uvrC motif; 50.7 42 0.00091 18.8 3.9 33 31-63 3-35 (36)
29 TIGR02449 conserved hypothetic 50.6 68 0.0015 20.8 7.5 44 31-79 1-44 (65)
30 PRK11637 AmiB activator; Provi 48.8 1.7E+02 0.0037 24.9 9.2 51 29-79 74-126 (428)
31 PRK00888 ftsB cell division pr 48.3 58 0.0013 22.8 5.1 29 51-79 29-57 (105)
32 PRK10884 SH3 domain-containing 48.3 1.3E+02 0.0029 23.5 8.3 13 67-79 136-148 (206)
33 PF04849 HAP1_N: HAP1 N-termin 45.4 39 0.00084 28.4 4.4 26 57-82 161-186 (306)
34 KOG0804 Cytoplasmic Zn-finger 43.9 1.1E+02 0.0024 27.3 7.0 51 29-79 360-412 (493)
35 PF05529 Bap31: B-cell recepto 43.5 1.4E+02 0.0031 22.5 8.3 50 30-79 125-184 (192)
36 KOG3584 cAMP response element 43.3 53 0.0012 27.7 4.8 34 42-79 302-335 (348)
37 PF03980 Nnf1: Nnf1 ; InterPr 41.7 1E+02 0.0023 21.1 5.6 34 46-79 70-103 (109)
38 smart00338 BRLZ basic region l 41.3 87 0.0019 19.4 4.9 29 51-79 35-63 (65)
39 PF06005 DUF904: Protein of un 40.7 1E+02 0.0023 20.2 5.9 32 48-79 10-41 (72)
40 PF09789 DUF2353: Uncharacteri 40.1 2.3E+02 0.005 23.9 8.8 72 3-79 33-109 (319)
41 PF07558 Shugoshin_N: Shugoshi 39.5 44 0.00095 20.0 2.9 31 49-79 14-44 (46)
42 PRK13169 DNA replication intia 38.7 1.4E+02 0.0031 21.2 6.3 38 41-79 8-45 (110)
43 PRK13729 conjugal transfer pil 37.8 1.2E+02 0.0025 27.1 6.3 28 52-79 93-120 (475)
44 PF04508 Pox_A_type_inc: Viral 37.0 45 0.00097 17.4 2.3 16 1-16 2-17 (23)
45 smart00340 HALZ homeobox assoc 36.4 89 0.0019 18.8 3.8 25 59-88 8-32 (44)
46 PF14282 FlxA: FlxA-like prote 36.2 1.5E+02 0.0032 20.6 7.3 52 2-70 21-72 (106)
47 PF15243 ANAPC15: Anaphase-pro 35.6 50 0.0011 22.9 3.0 24 30-53 28-51 (92)
48 PF04880 NUDE_C: NUDE protein, 35.2 78 0.0017 24.2 4.3 43 32-79 2-47 (166)
49 PF15397 DUF4618: Domain of un 34.5 2.6E+02 0.0056 22.9 8.3 77 2-79 122-216 (258)
50 PF04728 LPP: Lipoprotein leuc 33.3 1.3E+02 0.0028 19.0 6.1 31 49-79 3-33 (56)
51 TIGR02894 DNA_bind_RsfA transc 33.1 2.2E+02 0.0048 21.7 9.6 56 24-79 77-134 (161)
52 KOG0930 Guanine nucleotide exc 33.0 1.5E+02 0.0032 25.2 5.9 39 24-71 8-46 (395)
53 TIGR02209 ftsL_broad cell divi 31.9 1.4E+02 0.003 19.2 4.7 29 51-79 26-54 (85)
54 smart00030 CLb CLUSTERIN Beta 31.1 2.6E+02 0.0057 22.2 6.7 29 22-50 7-35 (206)
55 KOG4005 Transcription factor X 31.0 2.4E+02 0.0052 23.2 6.6 54 22-76 59-117 (292)
56 PF12537 DUF3735: Protein of u 30.7 91 0.002 20.1 3.6 25 29-53 47-71 (72)
57 PF12548 DUF3740: Sulfatase pr 30.5 92 0.002 23.2 4.0 25 54-78 111-135 (145)
58 PF01093 Clusterin: Clusterin; 29.8 2.3E+02 0.005 25.0 6.8 28 23-50 2-29 (436)
59 PF08946 Osmo_CC: Osmosensory 29.5 1.3E+02 0.0028 18.3 3.7 26 48-73 18-43 (46)
60 PF09726 Macoilin: Transmembra 29.5 4.7E+02 0.01 24.4 9.7 54 5-67 543-605 (697)
61 PF11629 Mst1_SARAH: C termina 29.1 90 0.0019 19.3 3.1 11 24-34 5-15 (49)
62 PF11365 DUF3166: Protein of u 29.1 1.4E+02 0.003 20.9 4.4 28 52-79 11-38 (96)
63 KOG3119 Basic region leucine z 28.8 1.7E+02 0.0038 23.7 5.6 37 39-79 202-238 (269)
64 TIGR00012 L29 ribosomal protei 27.9 1.1E+02 0.0025 18.7 3.5 28 23-50 1-28 (55)
65 PF04999 FtsL: Cell division p 27.1 1.7E+02 0.0038 19.4 4.6 29 51-79 37-65 (97)
66 PF10504 DUF2452: Protein of u 26.7 2.9E+02 0.0063 21.1 8.4 43 28-70 28-73 (159)
67 KOG3759 Uncharacterized RUN do 26.0 5E+02 0.011 23.6 8.9 67 4-79 181-250 (621)
68 PF10224 DUF2205: Predicted co 25.8 1.8E+02 0.0038 19.6 4.4 26 54-79 35-60 (80)
69 PF14988 DUF4515: Domain of un 25.7 3.2E+02 0.007 21.3 6.5 56 24-79 108-172 (206)
70 PF09798 LCD1: DNA damage chec 25.4 3.9E+02 0.0085 24.8 7.8 49 31-79 5-56 (654)
71 PF04645 DUF603: Protein of un 25.1 3.3E+02 0.0072 21.2 6.7 50 30-79 112-161 (181)
72 PHA03162 hypothetical protein; 24.8 1.2E+02 0.0026 22.5 3.6 22 58-79 15-36 (135)
73 cd08888 SRPBCC_PITPNA-B_like L 24.8 94 0.002 25.5 3.4 39 10-48 218-258 (258)
74 PF15619 Lebercilin: Ciliary p 24.7 2.2E+02 0.0047 22.1 5.3 35 45-79 8-42 (194)
75 PF04849 HAP1_N: HAP1 N-termin 24.7 3.3E+02 0.0071 22.9 6.6 26 54-79 239-264 (306)
76 PF15619 Lebercilin: Ciliary p 24.6 3.4E+02 0.0073 21.0 8.0 18 62-79 170-187 (194)
77 PF10226 DUF2216: Uncharacteri 24.0 3.5E+02 0.0077 21.3 6.3 34 48-81 47-80 (195)
78 PF03250 Tropomodulin: Tropomo 23.9 48 0.0011 24.9 1.4 18 24-41 21-38 (147)
79 PRK09039 hypothetical protein; 23.8 4.4E+02 0.0095 22.1 8.2 46 2-68 139-184 (343)
80 PF09744 Jnk-SapK_ap_N: JNK_SA 23.6 3.3E+02 0.007 20.5 8.9 27 53-79 86-112 (158)
81 COG1382 GimC Prefoldin, chaper 23.0 2.4E+02 0.0053 20.4 4.9 38 41-79 70-107 (119)
82 PHA03162 hypothetical protein; 23.0 3.2E+02 0.007 20.3 6.6 48 1-48 21-72 (135)
83 PF07246 Phlebovirus_NSM: Phle 23.0 4.3E+02 0.0094 21.8 7.0 15 65-79 211-225 (264)
84 PF15058 Speriolin_N: Sperioli 22.7 1.9E+02 0.0041 22.8 4.6 29 50-79 13-41 (200)
85 TIGR01950 SoxR redox-sensitive 21.9 2.5E+02 0.0055 20.4 5.0 54 26-79 57-110 (142)
86 PF09006 Surfac_D-trimer: Lung 21.9 1.1E+02 0.0025 18.5 2.5 17 3-19 2-18 (46)
87 PF07888 CALCOCO1: Calcium bin 21.6 6.2E+02 0.013 23.1 9.8 15 4-18 168-182 (546)
88 PLN02372 violaxanthin de-epoxi 20.9 5.1E+02 0.011 23.0 7.2 28 29-56 378-405 (455)
89 PF06937 EURL: EURL protein; 20.7 1.2E+02 0.0027 25.1 3.3 37 12-48 204-240 (285)
90 TIGR02231 conserved hypothetic 20.5 5.8E+02 0.013 22.3 8.3 43 26-69 123-165 (525)
91 cd01109 HTH_YyaN Helix-Turn-He 20.5 2.9E+02 0.0063 18.8 6.1 53 26-79 57-109 (113)
92 PHA03155 hypothetical protein; 20.5 3.4E+02 0.0074 19.6 6.5 48 1-48 16-63 (115)
93 PRK13923 putative spore coat p 20.4 4.1E+02 0.0088 20.4 6.2 25 55-79 110-134 (170)
94 PTZ00108 DNA topoisomerase 2-l 20.1 1.3E+02 0.0029 30.3 3.9 43 2-44 1104-1146(1388)
95 PF08687 ASD2: Apx/Shroom doma 20.1 3.3E+02 0.0071 22.4 5.7 39 37-79 78-116 (264)
96 KOG0837 Transcriptional activa 20.0 4.9E+02 0.011 21.6 6.6 49 27-79 199-250 (279)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.88 E-value=2.7e-22 Score=140.47 Aligned_cols=79 Identities=44% Similarity=0.634 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 1 E~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|+++|+.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||+++|.++|+.+++|+..+.++|..|+.++
T Consensus 20 e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 20 EIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.69 E-value=0.17 Score=33.60 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+|++-|..||.++..++..| .++..+|+.|+.+...+.++|..|....
T Consensus 1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 58899999999999999999 4566677888888777777777777665
No 3
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=94.90 E-value=0.0068 Score=45.93 Aligned_cols=64 Identities=30% Similarity=0.318 Sum_probs=51.5
Q ss_pred HHHHHHHHH---HHhhhhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHH
Q 038821 5 LRQQIQMSL---NSNRHLMGDSLSSLTV-KELKQLENRLERGITRFRFKKHEMPLAEIE-FLQKREIEL 68 (136)
Q Consensus 5 Lk~~~~~Lq---~~~R~l~GEdL~~Ls~-~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~-~l~kKe~~L 68 (136)
++...+.+. ...++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...+
T Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (195)
T KOG0014|consen 119 LKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSL 187 (195)
T ss_pred hhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhc
Confidence 344445554 4489999999999999 999999999999999999999999988876 445444443
No 4
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.56 E-value=2 Score=30.53 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 29 VKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++.|..||++|..-+..|..-|.++ ..+-..-..|.-||..|+..+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888877777665544433 444455555666777777777
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.27 E-value=1.6 Score=29.58 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038821 27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVC 74 (136)
Q Consensus 27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~ 74 (136)
||++=|.+||..+..|+.-| .++..+|+.++.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999998 67777888888887766666554
No 6
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.27 E-value=3.7 Score=27.37 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
||++=|..||..+..|+.-| .++.-+|+.|+.|...|..+-..+....
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 68888999999999999988 6788888888888777766665555444
No 7
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=87.33 E-value=1.1 Score=28.67 Aligned_cols=30 Identities=40% Similarity=0.564 Sum_probs=21.3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 038821 18 HLMGDSLSSLTVKELKQLENRLERGITRFR 47 (136)
Q Consensus 18 ~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR 47 (136)
+..|+||+.||+.||..==..|+.=+.+++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLE 41 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999764444444444443
No 8
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=84.08 E-value=2 Score=30.73 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 55 LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 55 ~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..++..++||...|+|||+.|+.|+
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKi 95 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKI 95 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999998
No 9
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.30 E-value=3.5 Score=26.44 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+++.++|..|..+...|+.||..|+...
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667777777777778888887777655
No 10
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.86 E-value=17 Score=26.02 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 29 VKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++-+.+||+++..-+..|..-|.++ ..+-..-..|.-||..|+..+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999988888776655443 555566667777888888888
No 11
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.56 E-value=13 Score=23.37 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|-.+.|.||...+ +.|..++..|..+|..|...+
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888776 888888888888888888777
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.78 E-value=32 Score=27.02 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 038821 3 VKLRQQIQMSLNSNRHLM 20 (136)
Q Consensus 3 ~~Lk~~~~~Lq~~~R~l~ 20 (136)
.++.+++..++..+..+-
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666665555544
No 13
>smart00338 BRLZ basic region leucin zipper.
Probab=77.73 E-value=14 Score=23.13 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+.|.||...+ ..|..++..|..+|..|..++
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 36677888887765 888899999999999998888
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.26 E-value=45 Score=30.64 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 3 VKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRF-----KKHEMPLAEIEFLQKREIELENESVCLRS 77 (136)
Q Consensus 3 ~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~-----rK~~ll~~qi~~l~kKe~~L~eeN~~L~~ 77 (136)
.+|..+|..|+..+-.+. +++..||.+|+..-.+++. |+.+.+...|..|+++...-...-..|..
T Consensus 432 e~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 432 ERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444 7888999999988877763 44556777888888776655555556666
Q ss_pred HH
Q 038821 78 KV 79 (136)
Q Consensus 78 ~l 79 (136)
++
T Consensus 503 ~l 504 (652)
T COG2433 503 KL 504 (652)
T ss_pred HH
Confidence 66
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.10 E-value=20 Score=26.73 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 038821 4 KLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKK 50 (136)
Q Consensus 4 ~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK 50 (136)
.|+.++..|+..+..+.+ +-...|.+|...++.....+.+..|.||
T Consensus 120 ~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 3333444444444444444444444444
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.76 E-value=21 Score=21.69 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+-|.||-..+ ..+..++..|..+|..|..++
T Consensus 14 ~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 14 EAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 46667777776654 788888999999999999888
No 17
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.19 E-value=27 Score=25.23 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 34 QLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSK 78 (136)
Q Consensus 34 ~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~ 78 (136)
.+.+.+|.|+.-|.+.-+=-..++++.|+.+++.|.+.|..|...
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777654333223456666666666666666655544
No 18
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.16 E-value=48 Score=26.48 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 7 QQIQMSLNSNRHLMG-DSLSSLTVKELKQLENRLERGITRFRFK--KHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 7 ~~~~~Lq~~~R~l~G-EdL~~Ls~~EL~~LE~qLe~~L~~IR~r--K~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++++.++.....-.+ +.=.+-...|+..|+..++..-+..-.. +..-+..|.+.+++....|-++|..|+.++
T Consensus 134 ~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 134 KENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 355555555544332 1112234566777777776655544333 233455677777777777788888887777
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.50 E-value=83 Score=26.23 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 4 KLRQQIQMSLNSNRHLMG--DSLSSLTVKELKQLENRLERGITRFRFKKHEMP--LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 4 ~Lk~~~~~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll--~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.+++....|+.+++++.- +++++++..+|..+-..|..-...|-.++.++- ..+...+..++....+.-..+...|
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666543 578899999999999999988888877776643 4556666666666666666666666
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.27 E-value=1e+02 Score=25.50 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 5 LRQQIQMSLNSNRHLMG--DSLSSLTVKELKQLENRLERGITRFRFKKHEMP--LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 5 Lk~~~~~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll--~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++.....|..+++.+.. .+++.++..+|..+-..|...-..|..+|..+- ..+...++.++..+.++-..+...|
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554444432 448999999999999999998888887776653 4666666666777777766776666
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.93 E-value=58 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.++..+ +.....+..+|..|++....+.++|..|+-..
T Consensus 8 ~~l~~l-e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 8 DRLDQL-EQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 44556788999999999999999999999887
No 22
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=57.85 E-value=20 Score=25.86 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 46 FRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 46 IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
||. -.+.+.++|..|..+...|+.||..|+.-.
T Consensus 65 VRE-EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VRE-EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 554 357899999999999999999999988665
No 23
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=56.31 E-value=73 Score=22.93 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 29 VKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|+.+.+||++|-.-+..|-.-|.++ ..+-..-..|+-||..||..+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHh
Confidence 5677888988877776665544433 334444445556666667666
No 24
>PF14645 Chibby: Chibby family
Probab=55.95 E-value=22 Score=25.46 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 55 LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 55 ~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
......++++.+.|++||+.|+.++
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKI 94 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999887
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.64 E-value=34 Score=21.61 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 53 MPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 53 ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
-+..++..++++...+..+|..|..++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888
No 26
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.44 E-value=1.4e+02 Score=28.36 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 24 LSSLTVKEL-KQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 24 L~~Ls~~EL-~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++-+|+.-| ..|+.||..+++.. +++....++|-|-...+.+||+.++..+
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443 24677777766554 4455555556666666667777766665
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.87 E-value=90 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..+..+|..++++...|...|..|..+|
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999888
No 28
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=50.71 E-value=42 Score=18.79 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038821 31 ELKQLENRLERGITRFRFKKHEMPLAEIEFLQK 63 (136)
Q Consensus 31 EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~k 63 (136)
.+..|+..+..++..-+--+.-.+.++|..+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888888888888888888877765
No 29
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.57 E-value=68 Score=20.84 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 31 ELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 31 EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
||..||.+++.=|..... +..+...|+..+..+..++..|..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887776533 44444555555555555555555555
No 30
>PRK11637 AmiB activator; Provisional
Probab=48.78 E-value=1.7e+02 Score=24.95 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 29 VKELKQLENRLERGITRFRFKKHE--MPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~--ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..+|..|+.+|...-..|+....+ .+..+|..++++...++.+-...+..+
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666554433 344555555555555555444444444
No 31
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.29 E-value=58 Score=22.76 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 51 HEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 51 ~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..-+..++..++++...++.+|..|+.++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888888888887
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.27 E-value=1.3e+02 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 038821 67 ELENESVCLRSKV 79 (136)
Q Consensus 67 ~L~eeN~~L~~~l 79 (136)
.|.++|..|+.++
T Consensus 136 ~L~~~n~~L~~~l 148 (206)
T PRK10884 136 GLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 33
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.44 E-value=39 Score=28.36 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038821 57 EIEFLQKREIELENESVCLRSKVCKS 82 (136)
Q Consensus 57 qi~~l~kKe~~L~eeN~~L~~~l~~~ 82 (136)
+++.|++|.+.|+++|..|+...+.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999988443
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.86 E-value=1.1e+02 Score=27.28 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 29 VKELKQLENRLER--GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 29 ~~EL~~LE~qLe~--~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+.|..+|++.... +.++|=++|...+.+.++.+++....+.|+|+.|....
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555544433 45566678888888889999998888889998886654
No 35
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.52 E-value=1.4e+02 Score=22.49 Aligned_cols=50 Identities=30% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 30 KELKQLENRLERGITRFRF----------KKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 30 ~EL~~LE~qLe~~L~~IR~----------rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.+|..+|..++.+-+...+ .+.....++|+.++++....+.+...|+.+.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777766666555432 2445667888888888777777777787777
No 36
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=43.29 E-value=53 Score=27.66 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|.+..|.+|.+.+ ..|..++..|++.|+.|-.+|
T Consensus 302 AARECRRKKKEYV----KCLENRVAVLENQNKaLIEEL 335 (348)
T KOG3584|consen 302 AARECRRKKKEYV----KCLENRVAVLENQNKALIEEL 335 (348)
T ss_pred HHHHHHHhHhHHH----HHHHhHHHHHhcccHHHHHHH
Confidence 5566677776664 889999999999999998777
No 37
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.70 E-value=1e+02 Score=21.08 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=27.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 46 FRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 46 IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|++.=......+++.|+.+...++.+|..|...|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i 103 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEI 103 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556778999999999999999999988
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=41.27 E-value=87 Score=19.44 Aligned_cols=29 Identities=34% Similarity=0.193 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 51 HEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 51 ~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.+.+..++..|+.++..|..++..|+..+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777776654
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.66 E-value=1e+02 Score=20.16 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 48 FKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 48 ~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..|.+-..+.|..|+.++..|.++|..|....
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677788899999999999999999988766
No 40
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.07 E-value=2.3e+02 Score=23.94 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhhc--CCCCCCCC---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 3 VKLRQQIQMSLNSNRHLM--GDSLSSLT---VKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRS 77 (136)
Q Consensus 3 ~~Lk~~~~~Lq~~~R~l~--GEdL~~Ls---~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~ 77 (136)
+.|+.....|++..+-+. +...++.+ ..+=.. |..-|...|.+ +.-+..+++.|+++...++.+++.||.
T Consensus 33 EqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~----La~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 33 EQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKN----LAQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhh----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 345555566666666555 22222222 222223 33334444443 345678899999999999999999999
Q ss_pred HH
Q 038821 78 KV 79 (136)
Q Consensus 78 ~l 79 (136)
++
T Consensus 108 ~l 109 (319)
T PF09789_consen 108 KL 109 (319)
T ss_pred HH
Confidence 99
No 41
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=39.51 E-value=44 Score=20.00 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=13.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 49 KKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 49 rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|.+..+...|..+.++...|..+|..|+..+
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4556677788899999999999999998876
No 42
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.72 E-value=1.4e+02 Score=21.20 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.++..+ +.....+..++..|++.+..+.++|..|+-.-
T Consensus 8 d~l~~l-e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 8 DALDDL-EQNLGVLLKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34456678999999999999999999999875
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.81 E-value=1.2e+02 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++|..+...++.|...++.+|..|+.++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999998
No 44
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.96 E-value=45 Score=17.41 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHHHHHh
Q 038821 1 ESVKLRQQIQMSLNSN 16 (136)
Q Consensus 1 E~~~Lk~~~~~Lq~~~ 16 (136)
|+.+++..|..|++++
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566666666666543
No 45
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.38 E-value=89 Score=18.77 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 038821 59 EFLQKREIELENESVCLRSKVCKSVRSEME 88 (136)
Q Consensus 59 ~~l~kKe~~L~eeN~~L~~~l~~~~~~e~~ 88 (136)
+.|++=-..|.++|..|.+.+ ++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~-----~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEV-----QELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 567777889999999999999 6654
No 46
>PF14282 FlxA: FlxA-like protein
Probab=36.17 E-value=1.5e+02 Score=20.61 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038821 2 SVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELEN 70 (136)
Q Consensus 2 ~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~e 70 (136)
+..|++++..|+..+..+... .+++.++ +..|.+.|..+|..|+.....++.
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777665542 2223332 235556666677666666554433
No 47
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=35.56 E-value=50 Score=22.92 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038821 30 KELKQLENRLERGITRFRFKKHEM 53 (136)
Q Consensus 30 ~EL~~LE~qLe~~L~~IR~rK~~l 53 (136)
.||.++|++-...|..|+.+=..+
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~nl 51 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNNL 51 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Confidence 478899999999999998765544
No 48
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.18 E-value=78 Score=24.21 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 038821 32 LKQLENRLERGITRFRFKKHEMPLAEI---EFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 32 L~~LE~qLe~~L~~IR~rK~~ll~~qi---~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..+|..+..||.+- =+|..+| +.|+-++..|.+|-..|+..+
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888754 3454444 334444455555555555554
No 49
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.52 E-value=2.6e+02 Score=22.92 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHH
Q 038821 2 SVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRF------------------RFKKHEMPLAEIEFLQK 63 (136)
Q Consensus 2 ~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~I------------------R~rK~~ll~~qi~~l~k 63 (136)
++.|..++..+...+..=++ +|+.+-=.++..|+......-..| +.+.++.|..+|...++
T Consensus 122 Ia~L~rqlq~lk~~qqdEld-el~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re 200 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDELD-ELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFRE 200 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555544332 444444455555555444332222 33557777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 038821 64 REIELENESVCLRSKV 79 (136)
Q Consensus 64 Ke~~L~eeN~~L~~~l 79 (136)
-+..+.++...|+..+
T Consensus 201 ~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888888777
No 50
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.32 E-value=1.3e+02 Score=19.03 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=27.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 49 KKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 49 rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
-|..-|..+|..|..|+..|..+-..++..+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999999998887
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.08 E-value=2.2e+02 Score=21.73 Aligned_cols=56 Identities=30% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 24 LSSLTVKELKQLENRLERGITRFRF--KKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 24 L~~Ls~~EL~~LE~qLe~~L~~IR~--rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..++++.+....=+++......... .-.+-+..++..|+++...|+.++..|..++
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999887777777654333222 1233556777888888888888888887776
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.97 E-value=1.5e+02 Score=25.20 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038821 24 LSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENE 71 (136)
Q Consensus 24 L~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~ee 71 (136)
-.+||..|-..| -+||.||.+++ ++|+.|+..+...-++
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~e 46 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEE 46 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345676665554 46999998877 6788888876655444
No 53
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.86 E-value=1.4e+02 Score=19.25 Aligned_cols=29 Identities=24% Similarity=0.090 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 51 HEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 51 ~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
...+..++..++++...++.+|..|+.++
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566788999999999999999999988
No 54
>smart00030 CLb CLUSTERIN Beta chain.
Probab=31.10 E-value=2.6e+02 Score=22.17 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 038821 22 DSLSSLTVKELKQLENRLERGITRFRFKK 50 (136)
Q Consensus 22 EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK 50 (136)
++|..||..-=.-+.+++++||.-|..-|
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK 35 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIK 35 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666778899999999887655
No 55
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.98 E-value=2.4e+02 Score=23.22 Aligned_cols=54 Identities=28% Similarity=0.245 Sum_probs=27.2
Q ss_pred CCCCCCCHHHHHHHHHHHHH--HHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 038821 22 DSLSSLTVKELKQLENRLER--GITRFRFKKHEMP---LAEIEFLQKREIELENESVCLR 76 (136)
Q Consensus 22 EdL~~Ls~~EL~~LE~qLe~--~L~~IR~rK~~ll---~~qi~~l~kKe~~L~eeN~~L~ 76 (136)
+.|+.||.+|=.+ -..|.+ |-..-|.||...| ..+|..|...-..|+.+|..|+
T Consensus 59 ~RL~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred HhhcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888776433 233433 4455678875544 3344444443344444444443
No 56
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=30.70 E-value=91 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038821 29 VKELKQLENRLERGITRFRFKKHEM 53 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~l 53 (136)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999988764
No 57
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=30.48 E-value=92 Score=23.24 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSK 78 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~ 78 (136)
|..+|+.|+.|...|.+....|+.+
T Consensus 111 ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 111 IDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999998888754
No 58
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=29.81 E-value=2.3e+02 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 038821 23 SLSSLTVKELKQLENRLERGITRFRFKK 50 (136)
Q Consensus 23 dL~~Ls~~EL~~LE~qLe~~L~~IR~rK 50 (136)
+|.+||..-=.-+..++++||..|..-|
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK 29 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMK 29 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHH
Confidence 4555665556667788888888876544
No 59
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=29.47 E-value=1.3e+02 Score=18.30 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=16.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038821 48 FKKHEMPLAEIEFLQKREIELENESV 73 (136)
Q Consensus 48 ~rK~~ll~~qi~~l~kKe~~L~eeN~ 73 (136)
..|.+=+..+|..|++|-..|...+.
T Consensus 18 Eqkiedid~qIaeLe~KR~~Lv~qHP 43 (46)
T PF08946_consen 18 EQKIEDIDEQIAELEAKRQRLVDQHP 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455567788888888766665543
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.45 E-value=4.7e+02 Score=24.39 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH---HHH------hhhhHHHHHHHHHHHHHH
Q 038821 5 LRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRF---RFK------KHEMPLAEIEFLQKREIE 67 (136)
Q Consensus 5 Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~I---R~r------K~~ll~~qi~~l~kKe~~ 67 (136)
+|.+...|+.+++++.. ||..-|.++...-..+ |.. =.+.|+..+..||.|-..
T Consensus 543 ~r~r~~~lE~E~~~lr~---------elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRR---------ELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55566666666666653 4444444443333322 221 145777777788777433
No 61
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=29.13 E-value=90 Score=19.25 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=6.9
Q ss_pred CCCCCHHHHHH
Q 038821 24 LSSLTVKELKQ 34 (136)
Q Consensus 24 L~~Ls~~EL~~ 34 (136)
|..+|++||++
T Consensus 5 Lk~ls~~eL~~ 15 (49)
T PF11629_consen 5 LKFLSYEELQQ 15 (49)
T ss_dssp GGGS-HHHHHH
T ss_pred HhhCCHHHHHH
Confidence 55678888764
No 62
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.06 E-value=1.4e+02 Score=20.88 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++-.++-+-|+++...+.++|..|...+
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL 38 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEEL 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999999999998
No 63
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.79 E-value=1.7e+02 Score=23.69 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 39 LERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 39 Le~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
=..|+++=|.+..... ..++.|+..|..||..|+.++
T Consensus 202 NN~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v 238 (269)
T KOG3119|consen 202 NNEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQV 238 (269)
T ss_pred hhHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445665555444443 788899999999999999998
No 64
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=27.90 E-value=1.1e+02 Score=18.67 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 038821 23 SLSSLTVKELKQLENRLERGITRFRFKK 50 (136)
Q Consensus 23 dL~~Ls~~EL~~LE~qLe~~L~~IR~rK 50 (136)
||-++|.+||...-..+...+-..|..+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888544
No 65
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=27.13 E-value=1.7e+02 Score=19.42 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 51 HEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 51 ~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
...+..+++.+++....++++|..|+-++
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~ 65 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEI 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566779999999999999999999887
No 66
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=26.72 E-value=2.9e+02 Score=21.06 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHH
Q 038821 28 TVKELKQLENRLERGITRFRFK---KHEMPLAEIEFLQKREIELEN 70 (136)
Q Consensus 28 s~~EL~~LE~qLe~~L~~IR~r---K~~ll~~qi~~l~kKe~~L~e 70 (136)
+..||..|=++++.|..-||++ |-.+|.+||..|+..-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999876 666777888877776544433
No 67
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=26.00 E-value=5e+02 Score=23.55 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 4 KLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFR---FKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 4 ~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR---~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|-|-.++.|+..+- +-=||+.||-+||+ ++++.|+..+= .-|.++. +.|+..+..|+-=-..|....
T Consensus 181 kQk~ilDeLr~Kl~--lnl~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV----~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 181 KQKAILDELREKLE--LNLDIDKLSTEELR---RQVDDALKQLVNPFKEKEQLV----DQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHHHHHHHHHHHhh--ccCCcccccHHHHH---HHHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555443 23359999998876 68999988753 2344432 444444444444444444444
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.84 E-value=1.8e+02 Score=19.60 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|.+.|+..+.....|..+|.+|..-|
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777777
No 69
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.68 E-value=3.2e+02 Score=21.32 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHH-HHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 038821 24 LSSLTVKELKQLENRL-ERGITRFRFKKHEMPLA--------EIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 24 L~~Ls~~EL~~LE~qL-e~~L~~IR~rK~~ll~~--------qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+..--+.|=..||+++ +..+..+-.++..-+.. -+..+-.-.+.+..+|..|+..+
T Consensus 108 ~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L 172 (206)
T PF14988_consen 108 AESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKEL 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777777 55555444444443222 34444555667777888888777
No 70
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=25.43 E-value=3.9e+02 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 31 ELKQLENRLERGITRFRFKKHEMP---LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 31 EL~~LE~qLe~~L~~IR~rK~~ll---~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..|+++-+.=+...+.++..+= .++++.|+.-+..|++|.+.|....
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~ 56 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNEL 56 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777776643 5778888889999999999998887
No 71
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=25.12 E-value=3.3e+02 Score=21.17 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 30 KELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 30 ~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++...|+-.++.-=+.|.+.+.+.+.+.|+.++.+...+..+......++
T Consensus 112 ~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 112 KEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776666666667777777776666666666555555555444444
No 72
>PHA03162 hypothetical protein; Provisional
Probab=24.82 E-value=1.2e+02 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038821 58 IEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 58 i~~l~kKe~~L~eeN~~L~~~l 79 (136)
++.|..+...|+-||+.|++++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888999999999998
No 73
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=24.79 E-value=94 Score=25.49 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=31.7
Q ss_pred HHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038821 10 QMSLNSNRHLMG--DSLSSLTVKELKQLENRLERGITRFRF 48 (136)
Q Consensus 10 ~~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~~L~~IR~ 48 (136)
+.+-..+|++.. +.=-+||+++++.+|.+....|.++|.
T Consensus 218 ~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~~ 258 (258)
T cd08888 218 RLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMRE 258 (258)
T ss_pred HHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 345566777765 567789999999999999999999883
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.69 E-value=2.2e+02 Score=22.11 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 45 RFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 45 ~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..|.-|..-+.++|..++.+...+..||..|+.--
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788999999999999999999987654
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.69 E-value=3.3e+02 Score=22.90 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+..+|-.+++|.+.+.-+|..|...+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44666677777888888888888777
No 76
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.57 E-value=3.4e+02 Score=21.03 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038821 62 QKREIELENESVCLRSKV 79 (136)
Q Consensus 62 ~kKe~~L~eeN~~L~~~l 79 (136)
+.....+.++...|..+|
T Consensus 170 ~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 170 QEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555555555
No 77
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=23.95 E-value=3.5e+02 Score=21.28 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038821 48 FKKHEMPLAEIEFLQKREIELENESVCLRSKVCK 81 (136)
Q Consensus 48 ~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l~~ 81 (136)
.|+-+....+|..|+.-...|+++|..|+.-+|.
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCF 80 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCF 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566666777888888788889999999877654
No 78
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=23.93 E-value=48 Score=24.95 Aligned_cols=18 Identities=50% Similarity=0.748 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 038821 24 LSSLTVKELKQLENRLER 41 (136)
Q Consensus 24 L~~Ls~~EL~~LE~qLe~ 41 (136)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 678999999999987743
No 79
>PRK09039 hypothetical protein; Validated
Probab=23.81 E-value=4.4e+02 Score=22.10 Aligned_cols=46 Identities=30% Similarity=0.186 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038821 2 SVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIEL 68 (136)
Q Consensus 2 ~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L 68 (136)
+..|+.+|+.|+.. |..||..|+.+=.+.+..+ .+|+.++.+....
T Consensus 139 V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~-----~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQ-----AKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45677777777766 7888888887777665444 3445665554433
No 80
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.56 E-value=3.3e+02 Score=20.52 Aligned_cols=27 Identities=30% Similarity=0.135 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 53 MPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 53 ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.+..+...|..++..|+.+|+.|..++
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677778888888999998888777
No 81
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=2.4e+02 Score=20.41 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.++..+..|+ +.+.-+|.+|++.+..+++.-..|+.+|
T Consensus 70 ~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 70 EAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333 4556677777777777777777777666
No 82
>PHA03162 hypothetical protein; Provisional
Probab=22.97 E-value=3.2e+02 Score=20.27 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q 038821 1 ESVKLRQQIQMSLNSNRHLMGDS----LSSLTVKELKQLENRLERGITRFRF 48 (136)
Q Consensus 1 E~~~Lk~~~~~Lq~~~R~l~GEd----L~~Ls~~EL~~LE~qLe~~L~~IR~ 48 (136)
|+.+|+-+|..|.+.+|+=.|-+ =..|+..+=.-+=...-.+|...=+
T Consensus 21 eL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~ 72 (135)
T PHA03162 21 EIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAA 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999998877765 2236666554444444444443333
No 83
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=22.95 E-value=4.3e+02 Score=21.76 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038821 65 EIELENESVCLRSKV 79 (136)
Q Consensus 65 e~~L~eeN~~L~~~l 79 (136)
+..+.++++.|..++
T Consensus 211 ~~~lr~~~~~l~~el 225 (264)
T PF07246_consen 211 ESGLRNESKWLEHEL 225 (264)
T ss_pred HhhhHHHHHHHHHHH
Confidence 333444555555554
No 84
>PF15058 Speriolin_N: Speriolin N terminus
Probab=22.69 E-value=1.9e+02 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.087 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 50 KHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 50 K~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+++.++.+.++|||.++. -.||..|+.-+
T Consensus 13 qierLv~ENeeLKKlVrL-irEN~eLksaL 41 (200)
T PF15058_consen 13 QIERLVRENEELKKLVRL-IRENHELKSAL 41 (200)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHHHHHHHHH
Confidence 445566888999988885 45677787777
No 85
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=21.93 E-value=2.5e+02 Score=20.43 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 26 SLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 26 ~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++|++|+..+=..+...-...-..-..++.+++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887655433211111111123555666677777666666666665555
No 86
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.92 E-value=1.1e+02 Score=18.54 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038821 3 VKLRQQIQMSLNSNRHL 19 (136)
Q Consensus 3 ~~Lk~~~~~Lq~~~R~l 19 (136)
+.|+++++.|+..+|++
T Consensus 2 ~aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45667777776665553
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.59 E-value=6.2e+02 Score=23.06 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhh
Q 038821 4 KLRQQIQMSLNSNRH 18 (136)
Q Consensus 4 ~Lk~~~~~Lq~~~R~ 18 (136)
.|+.+++.|+..+++
T Consensus 168 ~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 168 QLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 88
>PLN02372 violaxanthin de-epoxidase
Probab=20.94 E-value=5.1e+02 Score=23.00 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 038821 29 VKELKQLENRLERGITRFRFKKHEMPLA 56 (136)
Q Consensus 29 ~~EL~~LE~qLe~~L~~IR~rK~~ll~~ 56 (136)
++|..++|.+++.-+.+|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888888766665544
No 89
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.69 E-value=1.2e+02 Score=25.15 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038821 12 SLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRF 48 (136)
Q Consensus 12 Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~ 48 (136)
++...++..=|.|.+|++.||.+|=..|-..+..|=.
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555677778999999999999999888777666644
No 90
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.52 E-value=5.8e+02 Score=22.31 Aligned_cols=43 Identities=26% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038821 26 SLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELE 69 (136)
Q Consensus 26 ~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~ 69 (136)
..++.++..+-.-+...+..++.++.++ ..++..++++...++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQ 165 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4577777777776666666666555322 234444444444433
No 91
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.49 E-value=2.9e+02 Score=18.84 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 26 SLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 26 ~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++|++|+..+=.....+-..+. .-..++.+++..+..+...++..-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777664322211111111 1234556666666666666655555555444
No 92
>PHA03155 hypothetical protein; Provisional
Probab=20.45 E-value=3.4e+02 Score=19.61 Aligned_cols=48 Identities=17% Similarity=-0.009 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038821 1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRF 48 (136)
Q Consensus 1 E~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~ 48 (136)
|+.+|+-+|..|++.+++=.+.+=..|+..+=.-+=...-.+|...=+
T Consensus 16 eL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~ 63 (115)
T PHA03155 16 ELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAE 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888877666554557776655544444444444433
No 93
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.40 E-value=4.1e+02 Score=20.44 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 55 LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 55 ~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.++|..++.+...|..++..|..+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554
No 94
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=20.12 E-value=1.3e+02 Score=30.30 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 038821 2 SVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGIT 44 (136)
Q Consensus 2 ~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~ 44 (136)
+.+|.++.+.++.++..+.+-....|..+||..++..++....
T Consensus 1104 v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~ 1146 (1388)
T PTZ00108 1104 VEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEE 1146 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888999888888887544
No 95
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=20.07 E-value=3.3e+02 Score=22.37 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 37 NRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 37 ~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
........-|..+|.+++ +.+.+|...|+++...|...+
T Consensus 78 ~~~~e~~~~l~~Kk~eLi----~~l~~kl~~L~~eqe~l~ee~ 116 (264)
T PF08687_consen 78 DSDDENDNDLNAKKVELI----ESLSKKLEVLQEEQEALQEEI 116 (264)
T ss_dssp --------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888999887 788899988888888887777
No 96
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.04 E-value=4.9e+02 Score=21.58 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHH-H--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 27 LTVKELKQLENR-L--ERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 27 Ls~~EL~~LE~q-L--e~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+...|+..||+. + -.+.++-|.||.+ .|..|++|+..+.-.|..|-..+
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLd----risrLEdkv~~lk~~n~~L~~~l 250 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKLD----RISRLEDKVKTLKIYNRDLASEL 250 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHhhhhhhhhhhhhHHHHH
Confidence 445677777762 2 2366667776655 45888999888888888776665
Done!