Query 038821
Match_columns 136
No_of_seqs 186 out of 1272
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 92.7 1.3 4.6E-05 29.1 8.8 46 27-77 3-48 (81)
2 2dgc_A Protein (GCN4); basic d 85.6 3.5 0.00012 25.5 6.3 35 41-79 19-53 (63)
3 2wt7_A Proto-oncogene protein 85.0 3.8 0.00013 25.1 6.3 34 42-79 13-46 (63)
4 1dh3_A Transcription factor CR 83.3 4.8 0.00016 24.2 6.1 34 42-79 12-45 (55)
5 1t2k_D Cyclic-AMP-dependent tr 83.3 5.1 0.00018 24.3 6.3 34 42-79 12-45 (61)
6 1jnm_A Proto-oncogene C-JUN; B 82.9 5.4 0.00018 24.3 6.3 35 41-79 11-45 (62)
7 1dip_A Delta-sleep-inducing pe 79.0 3 0.0001 27.0 4.2 28 52-79 18-45 (78)
8 1ci6_A Transcription factor AT 77.3 10 0.00035 23.3 6.3 35 41-79 12-46 (63)
9 2oqq_A Transcription factor HY 72.1 12 0.0004 21.6 5.1 26 54-79 15-40 (42)
10 2yy0_A C-MYC-binding protein; 70.1 9.6 0.00033 22.8 4.7 28 52-79 22-49 (53)
11 2w6a_A ARF GTPase-activating p 58.7 30 0.001 21.4 8.3 53 25-77 8-62 (63)
12 2dfs_A Myosin-5A; myosin-V, in 56.5 86 0.0029 29.1 10.4 21 59-79 1019-1039(1080)
13 1e52_A Excinuclease ABC subuni 51.4 19 0.00065 22.3 3.7 43 22-64 12-58 (63)
14 1hjb_A Ccaat/enhancer binding 48.9 53 0.0018 21.4 6.3 34 42-79 26-59 (87)
15 3nmd_A CGMP dependent protein 46.7 54 0.0018 20.9 7.1 49 24-79 15-63 (72)
16 1gd2_E Transcription factor PA 46.6 52 0.0018 20.6 6.0 39 41-79 18-59 (70)
17 1a93_B MAX protein, coiled coi 45.6 31 0.0011 18.9 3.5 23 49-71 7-29 (34)
18 1gu4_A CAAT/enhancer binding p 45.3 58 0.002 20.8 6.3 35 41-79 25-59 (78)
19 3thf_A Protein shroom; coiled- 43.7 45 0.0015 25.1 5.3 33 43-79 10-42 (190)
20 1t2k_D Cyclic-AMP-dependent tr 39.8 59 0.002 19.3 5.1 30 50-79 30-59 (61)
21 1ci6_A Transcription factor AT 37.9 67 0.0023 19.4 5.4 30 50-79 31-60 (63)
22 3s9g_A Protein hexim1; cyclin 36.8 97 0.0033 21.0 8.0 57 22-79 25-88 (104)
23 1go4_E MAD1 (mitotic arrest de 36.3 65 0.0022 21.7 4.7 24 56-79 12-35 (100)
24 3m9b_A Proteasome-associated A 35.6 75 0.0026 24.8 5.7 26 54-79 59-84 (251)
25 1j1d_C Troponin I, TNI; THIN f 34.3 1.2E+02 0.0041 21.3 9.4 50 5-54 31-85 (133)
26 3anw_B GINS23, putative unchar 33.8 73 0.0025 23.4 5.1 50 2-52 82-133 (171)
27 3oja_B Anopheles plasmodium-re 32.6 2.1E+02 0.0072 23.6 11.3 28 51-78 525-552 (597)
28 2l5g_A GPS2 protein, G protein 32.2 69 0.0023 17.9 3.9 22 55-76 14-35 (38)
29 1gk7_A Vimentin; intermediate 29.8 75 0.0026 17.6 4.7 26 54-79 11-36 (39)
30 2aze_B Transcription factor E2 29.3 54 0.0019 22.0 3.5 31 49-79 6-36 (106)
31 3na7_A HP0958; flagellar bioge 27.1 2E+02 0.0069 21.6 9.7 43 28-70 88-132 (256)
32 2aze_A Transcription factor DP 26.8 1.8E+02 0.0062 21.0 7.5 47 28-76 3-49 (155)
33 1g6u_A Domain swapped dimer; d 26.4 95 0.0033 17.6 6.6 22 25-46 15-36 (48)
34 1j1e_C Troponin I, TNI; THIN f 24.9 2.1E+02 0.0072 21.1 8.4 50 5-54 31-85 (180)
35 3s4r_A Vimentin; alpha-helix, 24.6 1.5E+02 0.0051 19.3 8.5 28 52-79 52-79 (93)
36 1am9_A Srebp-1A, protein (ster 24.2 1.4E+02 0.0047 18.7 4.7 23 57-79 51-73 (82)
37 1nkp_B MAX protein, MYC proto- 23.5 1.4E+02 0.0048 18.6 5.9 26 54-79 52-77 (83)
38 3gp4_A Transcriptional regulat 22.8 1.9E+02 0.0065 19.8 7.9 53 26-79 59-111 (142)
39 2jo8_A Serine/threonine-protei 22.3 96 0.0033 18.4 3.2 11 24-34 7-17 (51)
40 3hnw_A Uncharacterized protein 21.8 2.1E+02 0.0071 19.9 9.8 47 33-79 78-126 (138)
41 2jee_A YIIU; FTSZ, septum, coi 21.4 1.7E+02 0.0059 18.8 5.9 32 48-79 12-43 (81)
42 1p9i_A Cortexillin I/GCN4 hybr 20.4 1E+02 0.0036 16.0 3.0 16 64-79 7-22 (31)
43 3swk_A Vimentin; cytoskeleton, 20.4 1.3E+02 0.0045 19.2 3.9 20 1-20 1-20 (86)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.70 E-value=1.3 Score=29.12 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRS 77 (136)
Q Consensus 27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~ 77 (136)
+|++=|.+||..+..++..| .++..+|+.|+.|-..|.+++..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999988 67777888888887777776666444
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.60 E-value=3.5 Score=25.55 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+.|.||.+.+ ..|..++..|..+|..|...+
T Consensus 19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888776 889999999999999999888
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.99 E-value=3.8 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..+-|.||.+.+ ..|..++..|..+|..|...+
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888776 899999999999999999998
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=83.34 E-value=4.8 Score=24.19 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|-.+-|.||...+ +.|..++..|..+|..|...+
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777654 889999999999999999998
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.28 E-value=5.1 Score=24.29 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..+.|.||.+.+ ..|..++..|..+|..|...+
T Consensus 12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888765 889999999999999999888
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.88 E-value=5.4 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+-|.||.+.+ ..|..++..|..+|..|...+
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888776 899999999999999999998
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.97 E-value=3 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+++.++|.+|..|...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677888888888888888888877555
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.28 E-value=10 Score=23.27 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+-|.+|..-+ +.+..++..|..+|..|..++
T Consensus 12 ~AA~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 12 TAATRYRQKKRAEQ----EALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776554 788888888888888888888
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.11 E-value=12 Score=21.57 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+...+..|..++..|+.||..||+.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 45556778888888889999888776
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.06 E-value=9.6 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+.|..++..|+.|+..|.+++..|+.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888877
No 11
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=58.69 E-value=30 Score=21.41 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 25 SSLTVKELKQLENRLERGITRFRF--KKHEMPLAEIEFLQKREIELENESVCLRS 77 (136)
Q Consensus 25 ~~Ls~~EL~~LE~qLe~~L~~IR~--rK~~ll~~qi~~l~kKe~~L~eeN~~L~~ 77 (136)
+..++.|-..+-+.|-.|=.+|-. +=+.-+.+++..++++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 357888888888888777666642 22334567888899999999999998873
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.52 E-value=86 Score=29.14 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038821 59 EFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 59 ~~l~kKe~~L~eeN~~L~~~l 79 (136)
+.|+.|+..|.++|..|+.++
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999988
No 13
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=51.44 E-value=19 Score=22.25 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCCCCCCHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038821 22 DSLSSLTVKE----LKQLENRLERGITRFRFKKHEMPLAEIEFLQKR 64 (136)
Q Consensus 22 EdL~~Ls~~E----L~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kK 64 (136)
.+...++.++ +..|+.++..+......-+...+.++|..++++
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3455566333 677889999999999888999999999888765
No 14
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.87 E-value=53 Score=21.45 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..+=|.++...- ..+..++..|..+|..|+.+|
T Consensus 26 AarrSR~krk~r~----~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 26 AVRKSRDKAKMRN----LETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5555565554433 667778888999999999888
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.67 E-value=54 Score=20.85 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 24 LSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 24 L~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++++.- +..|+..|......||.+... |..+.+......++...|+.++
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 788888898888888775543 5777777777777888888887
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.56 E-value=52 Score=20.63 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMP---LAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll---~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|=...|.||.+-| ..++..+......+..+|..|+..+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788887755 3455555555555667777777776
No 17
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.58 E-value=31 Score=18.91 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=13.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Q 038821 49 KKHEMPLAEIEFLQKREIELENE 71 (136)
Q Consensus 49 rK~~ll~~qi~~l~kKe~~L~ee 71 (136)
||+.-....|+.++++...|+++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHH
Confidence 55556666666666665555444
No 18
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.25 E-value=58 Score=20.81 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|..+-|.++-..- ..+..++..|..+|..|+.+|
T Consensus 25 ~AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35666666555443 667788899999999999998
No 19
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=43.68 E-value=45 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 43 ITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 43 L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
-+.|..+|.+++ +.+++|...|.++-..|...+
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~ 42 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEEC 42 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 456889999997 889999999999888888777
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.81 E-value=59 Score=19.33 Aligned_cols=30 Identities=27% Similarity=0.088 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 50 KHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 50 K~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+...+..+...|+.++..|.+++..|+..+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777778888887777665
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.94 E-value=67 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 50 KHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 50 K~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+.+-+..+...|+.++..|..++..|+.-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888887766
No 22
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.80 E-value=97 Score=20.95 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHH----HHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 22 DSLSSLTVKELK----QLENRLERG---ITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 22 EdL~~Ls~~EL~----~LE~qLe~~---L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|.|.+||-.||. .||..++.. -++.|..- .-...+|..|..++..|..+|..|+..-
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877775 577776665 22223321 2235788889999999999999888765
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.30 E-value=65 Score=21.69 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 56 AEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 56 ~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+++..+++++..|..+|..|+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888
No 24
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.64 E-value=75 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+..++..+..+...|.++-+.++.++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQL 84 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 25
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.33 E-value=1.2e+02 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 038821 5 LRQQIQMSLNSNRHLMG-----DSLSSLTVKELKQLENRLERGITRFRFKKHEMP 54 (136)
Q Consensus 5 Lk~~~~~Lq~~~R~l~G-----EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll 54 (136)
|+++-+....+-+..+. -++++||..+|+.+=+.|-..+..+=+-|+.+-
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44444444444444444 479999999999999999999999888877764
No 26
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=33.77 E-value=73 Score=23.40 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhhh
Q 038821 2 SVKLRQQIQMSLNSNRHLMGDSLSS--LTVKELKQLENRLERGITRFRFKKHE 52 (136)
Q Consensus 2 ~~~Lk~~~~~Lq~~~R~l~GEdL~~--Ls~~EL~~LE~qLe~~L~~IR~rK~~ 52 (136)
+.+.+.-+..|+.++|+-.+.|+++ ..+++|..+.+.++ .|..+|-+|.=
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KIv 133 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKIL 133 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3567778888999998888778665 33467777766543 56667777643
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.62 E-value=2.1e+02 Score=23.59 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 51 HEMPLAEIEFLQKREIELENESVCLRSK 78 (136)
Q Consensus 51 ~~ll~~qi~~l~kKe~~L~eeN~~L~~~ 78 (136)
.+...++++..+++...++++...+..+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 3333334433333333333333333333
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.20 E-value=69 Score=17.86 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038821 55 LAEIEFLQKREIELENESVCLR 76 (136)
Q Consensus 55 ~~qi~~l~kKe~~L~eeN~~L~ 76 (136)
.+||..++.|...|+++.-.|.
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888877765554
No 29
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.80 E-value=75 Score=17.58 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+.+.....-.|++.|+.+|..|..++
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555678889999999998877
No 30
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.27 E-value=54 Score=22.04 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=23.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 49 KKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 49 rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.|...+..+++.|..+|+.|.+.-..+...+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888887777777777
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.06 E-value=2e+02 Score=21.59 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHH
Q 038821 28 TVKELKQLENRLERGITRFRFKKHEMP--LAEIEFLQKREIELEN 70 (136)
Q Consensus 28 s~~EL~~LE~qLe~~L~~IR~rK~~ll--~~qi~~l~kKe~~L~e 70 (136)
+.+|+..|.+.++..-.+|...-.+++ +++++.++.....+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988777776665544 4556555544443333
No 32
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.83 E-value=1.8e+02 Score=21.00 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 28 TVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLR 76 (136)
Q Consensus 28 s~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~ 76 (136)
|..|...||..-..-..+|+.+|.++- ++...+.=.+.|.+.|+.+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 678999999998888899987766542 12222222345555555443
No 33
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.38 E-value=95 Score=17.63 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 038821 25 SSLTVKELKQLENRLERGITRF 46 (136)
Q Consensus 25 ~~Ls~~EL~~LE~qLe~~L~~I 46 (136)
+++|.+||--||..|..--+++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999998876543333
No 34
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=24.88 E-value=2.1e+02 Score=21.12 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 038821 5 LRQQIQMSLNSNRHLMG-----DSLSSLTVKELKQLENRLERGITRFRFKKHEMP 54 (136)
Q Consensus 5 Lk~~~~~Lq~~~R~l~G-----EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll 54 (136)
|+++-+.....-+..+. -+|++||..+|+.+=..|-..|..+=+-|+.+-
T Consensus 31 L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44444444444444444 388889999999999999999999888887764
No 35
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.61 E-value=1.5e+02 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
.++..+|..+++++..+..++..|...+
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888777776
No 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.18 E-value=1.4e+02 Score=18.74 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038821 57 EIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 57 qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
-|..|+..+..|.+++..|+..+
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888999999998888
No 37
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.53 E-value=1.4e+02 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 54 PLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 54 l~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..++..++.....|..+|..|..++
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666665
No 38
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.82 E-value=1.9e+02 Score=19.82 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 26 SLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 26 ~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
++|++|...+=.....+-..+.. ...++.+++..+..+...|+..-..|..++
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888887765544333222222 235677777888888887877777777777
No 39
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.30 E-value=96 Score=18.37 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=7.6
Q ss_pred CCCCCHHHHHH
Q 038821 24 LSSLTVKELKQ 34 (136)
Q Consensus 24 L~~Ls~~EL~~ 34 (136)
|..||++||.+
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 45568888765
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.75 E-value=2.1e+02 Score=19.91 Aligned_cols=47 Identities=21% Similarity=0.124 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 33 KQLENRLERGITRFRFKKHEMPL--AEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 33 ~~LE~qLe~~L~~IR~rK~~ll~--~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..|+.+++.--..|=+=|.++.. .+++.+.++...+.+++..|..++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555443 233445555555555555555555
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.40 E-value=1.7e+02 Score=18.83 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=24.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 48 FKKHEMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 48 ~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
..|.+-..+.|.-|+-.+..|.++|..|....
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888888888887777
No 42
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=20.45 E-value=1e+02 Score=15.96 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038821 64 REIELENESVCLRSKV 79 (136)
Q Consensus 64 Ke~~L~eeN~~L~~~l 79 (136)
-...|+.+|+.|+.++
T Consensus 7 llasleaenkqlkakv 22 (31)
T 1p9i_A 7 LLASLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456788888888888
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.43 E-value=1.3e+02 Score=19.23 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHHhhhhc
Q 038821 1 ESVKLRQQIQMSLNSNRHLM 20 (136)
Q Consensus 1 E~~~Lk~~~~~Lq~~~R~l~ 20 (136)
|+..|+.+++.+....-++.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~ 20 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVE 20 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHH
Confidence 56677777777766555443
Done!