Query 038821
Match_columns 136
No_of_seqs 186 out of 1272
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 05:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038821.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038821hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 49.6 12 0.00088 21.2 4.0 40 26-65 9-52 (56)
2 d2azeb1 e.63.1.2 (B:201-301) T 30.1 28 0.002 21.7 3.7 28 52-79 4-31 (101)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 26.2 50 0.0036 18.2 4.1 30 50-79 24-56 (61)
4 d1t27a_ d.129.3.4 (A:) Phoshat 26.1 30 0.0022 25.4 3.8 40 10-49 219-260 (269)
5 d1r8ea1 a.6.1.3 (A:3-120) Tran 25.3 68 0.005 19.4 6.2 10 26-35 61-70 (118)
6 d2zjrv1 a.2.2.1 (V:1-66) Ribos 22.5 63 0.0046 18.2 4.1 31 21-51 3-33 (66)
7 d1bjta_ e.11.1.1 (A:) DNA topo 21.9 19 0.0014 30.0 2.2 45 23-67 702-750 (760)
8 d3d19a2 a.29.13.1 (A:145-274) 20.8 98 0.0072 19.6 6.6 54 4-57 42-95 (130)
9 d1r73a_ a.2.2.1 (A:) Ribosomal 14.4 40 0.0029 19.1 1.8 29 22-50 4-32 (66)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 14.3 1.1E+02 0.008 17.2 5.5 21 59-79 57-77 (79)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=49.59 E-value=12 Score=21.17 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038821 26 SLTVKE----LKQLENRLERGITRFRFKKHEMPLAEIEFLQKRE 65 (136)
Q Consensus 26 ~Ls~~E----L~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe 65 (136)
++|.++ +..||+++..+.....--|.-.+.++|..+++..
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 455444 7889999999999999999999999998888764
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.09 E-value=28 Score=21.75 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821 52 EMPLAEIEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l 79 (136)
+-+..+++.|..+|+.|.+--..+...+
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L 31 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQL 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888877766666666
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.19 E-value=50 Score=18.16 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 038821 50 KHEMPLAE---IEFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 50 K~~ll~~q---i~~l~kKe~~L~eeN~~L~~~l 79 (136)
|..++..- |..|++++..|.+++..|+...
T Consensus 24 Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 24 KSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444 4456777888888888877655
No 4
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.12 E-value=30 Score=25.44 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=30.8
Q ss_pred HHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038821 10 QMSLNSNRHLMG--DSLSSLTVKELKQLENRLERGITRFRFK 49 (136)
Q Consensus 10 ~~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~~L~~IR~r 49 (136)
+.+-..+|+... ++=-+||+++++.+|.+....|.++|..
T Consensus 219 ~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~~ 260 (269)
T d1t27a_ 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQK 260 (269)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666554 4456899999999999999999998864
No 5
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=25.30 E-value=68 Score=19.38 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=5.9
Q ss_pred CCCHHHHHHH
Q 038821 26 SLTVKELKQL 35 (136)
Q Consensus 26 ~Ls~~EL~~L 35 (136)
++|+++...+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4666666554
No 6
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=22.47 E-value=63 Score=18.20 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=26.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 038821 21 GDSLSSLTVKELKQLENRLERGITRFRFKKH 51 (136)
Q Consensus 21 GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~ 51 (136)
-.||-++|.+||...-..+...+-..|..+.
T Consensus 3 ~~elr~~s~~eL~~~l~~lk~elf~LRfq~~ 33 (66)
T d2zjrv1 3 PSEMRNLQATDFAKEIDARKKELMELRFQAA 33 (66)
T ss_dssp STTTTTSCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999988888887663
No 7
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.92 E-value=19 Score=30.01 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 038821 23 SLSSLTVKELKQLENRLERGITRFRFKK----HEMPLAEIEFLQKREIE 67 (136)
Q Consensus 23 dL~~Ls~~EL~~LE~qLe~~L~~IR~rK----~~ll~~qi~~l~kKe~~ 67 (136)
.|..|+-.+...|+++++.-...+..=+ .+++.+.++.++++...
T Consensus 702 rL~~LT~eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k 750 (760)
T d1bjta_ 702 RIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQE 750 (760)
T ss_dssp CGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333322211 23445555555554433
No 8
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=20.85 E-value=98 Score=19.60 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038821 4 KLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAE 57 (136)
Q Consensus 4 ~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~q 57 (136)
...++-+.|-..-+.+.|--....++..+..+-++...++..+|.=|.+++...
T Consensus 42 ~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~ 95 (130)
T d3d19a2 42 NFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLI 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777787777888999999999999999999999888776433
No 9
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=14.44 E-value=40 Score=19.14 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 038821 22 DSLSSLTVKELKQLENRLERGITRFRFKK 50 (136)
Q Consensus 22 EdL~~Ls~~EL~~LE~qLe~~L~~IR~rK 50 (136)
.||-++|.+||...-..+...+-..|..+
T Consensus 4 ~elr~ls~~eL~~~l~~l~~el~~LRfq~ 32 (66)
T d1r73a_ 4 SELRNYTDEELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888887765
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.30 E-value=1.1e+02 Score=17.23 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038821 59 EFLQKREIELENESVCLRSKV 79 (136)
Q Consensus 59 ~~l~kKe~~L~eeN~~L~~~l 79 (136)
..+......|..++..|+.++
T Consensus 57 ~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 57 RKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444555555444
Done!