BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038822
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 290 bits (741), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/162 (87%), Positives = 150/162 (92%)
Query: 1 MAPIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFI 60
MAPIAVGD LPDG L YFDEQDQLQ+VSVHSL AGKKVILFGVPG FTPTCSLKHVPGFI
Sbjct: 1 MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFI 60
Query: 61 EKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSE 120
EKA EL+SKGV EILCISVNDPFVMKAWAK++P+NK VKFLADGSA YTHALGLELDL E
Sbjct: 61 EKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQE 120
Query: 121 KGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKSL 162
KGLGT+SRRFALLVDDLKVKAAN+E GG+FTVSSA+DILK L
Sbjct: 121 KGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSAEDILKDL 162
>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
pdb|4F82|B Chain B, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
Length = 176
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 108/165 (65%), Gaps = 6/165 (3%)
Query: 4 IAVGDPLPDGTLVYF--DEQDQL----QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVP 57
I VGD LPD L F D ++ SV AGK+V++FG+PG FTPTCS +HVP
Sbjct: 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVP 69
Query: 58 GFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELD 117
G++E A++L++ G+DEI C+SVND FVM AW + V+ +ADGSA +THALGL D
Sbjct: 70 GYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQD 129
Query: 118 LSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKSL 162
LS +G+G +S R+A+++D VK VE+ G F VS A +L +L
Sbjct: 130 LSARGMGIRSLRYAMVIDGGVVKTLAVEAPGKFEVSDAASVLATL 174
>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|B Chain B, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|C Chain C, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
Length = 184
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 102/162 (62%), Gaps = 6/162 (3%)
Query: 4 IAVGDPLPDGTLVYFDEQ--DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
IAVGD LP+ T F E+ D +V+ L GK+V+LF VPG FTPTCSL H+PG++E
Sbjct: 26 IAVGDKLPNAT---FKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLE 82
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
D + ++GVD+I ++VND V AWA + FL+D +A +T A+G E+DLS
Sbjct: 83 NRDAILARGVDDIAVVAVNDLHVXGAWATHSGGXGKIHFLSDWNAAFTKAIGXEIDLSAG 142
Query: 122 GLGTQSRRFALLVDDLKVKAANV-ESGGDFTVSSADDILKSL 162
LG +S+R++ LV+D VKA N+ ES G T S A L+ L
Sbjct: 143 TLGIRSKRYSXLVEDGVVKALNIEESPGQATASGAAAXLELL 184
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEK 62
PI GD LP T+ D+ V++ L AGKK +LF VPG FTP S H+PG++E+
Sbjct: 2 PIKEGDKLPAVTVFGATPNDK---VNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQ 58
Query: 63 ADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKG 122
A + KGVD I C++VND FVM AW K + V+ LAD +T A+ +ELDLS
Sbjct: 59 AAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVL 118
Query: 123 LGTQSRRFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+S+R++L+++D V NVE G T S A +IL L
Sbjct: 119 GNVRSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNILSQL 159
>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
pdb|2XHF|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
Length = 171
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
+PI VGD +PD LVY D + +H + G+K ILF V G F P S H+P ++
Sbjct: 12 SPIKVGDIIPD-VLVYEDVPSK--SFPIHDVFRGRKGILFSVVGAFVPG-SNNHIPEYLS 67
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
D+ + +G I CI+VNDPFVM AW KT ++ LAD ++T ALG ELD S+
Sbjct: 68 LYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKM 127
Query: 122 GLGTQSRRFALLVDDLKVKAANVE 145
+SRR+A+L+DD K+++ + E
Sbjct: 128 LGNNRSRRYAMLIDDNKIRSVSTE 151
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP CS H+PGF+E
Sbjct: 13 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE 69
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + C+SVND FV W + V+ LAD + + L LD S
Sbjct: 70 QAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 129
Query: 122 GLGTQSR--RFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 130 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP CS H+PGF+E
Sbjct: 12 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE 68
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + C+SVND FV W + V+ LAD + + L LD S
Sbjct: 69 QAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 128
Query: 122 GLGTQSR--RFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 129 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 172
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP CS H+PGF+E
Sbjct: 1 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE 57
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + C+SVND FV W + V+ LAD + + L LD S
Sbjct: 58 QAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 117
Query: 122 GLGTQSR--RFALLVDDLKVKAANVES-GGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 118 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP CS H+PGF+E
Sbjct: 12 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE 68
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + C+SVND FV W + V+ LAD + + L LD S
Sbjct: 69 QAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 128
Query: 122 GLGTQSR--RFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 129 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTXSLAPNIISQL 172
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Query: 18 FDE--QDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEIL 75
+DE + + V+ + KKV++FG+PG +T CS KHVP + D+ ++KGVD ++
Sbjct: 24 WDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVI 83
Query: 76 CISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD 135
C+++NDP+ + AWA+ +++F D + +L L DLS LG +S R++ V
Sbjct: 84 CVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV 143
Query: 136 DLKVKAANV-ESGGDFTVSSADDIL 159
D KVKA NV ES D VS A+ IL
Sbjct: 144 DGKVKALNVEESPSDVKVSGAETIL 168
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP CS H+PGF+E
Sbjct: 13 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE 69
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + +SVND FV W + V+ LAD + + L LD S
Sbjct: 70 QAEALKAKGVQVVASLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 129
Query: 122 GLGTQSR--RFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 130 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE 61
API VGD +P V E + +V++ L GKK +LFGVPG FTP S H+PGF+E
Sbjct: 12 APIKVGDAIP---AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGSSKTHLPGFVE 68
Query: 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121
+A+ L++KGV + C+SVND FV W + V+ LAD + + L LD S
Sbjct: 69 QAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLV 128
Query: 122 GLGTQSR--RFALLVDDLKVKAANVE-SGGDFTVSSADDILKSL 162
+ R RF+++V D VKA NVE G T S A +I+ L
Sbjct: 129 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 172
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81
D+ V+ L K VI+F +PG FTPTCS H+P + E A + GVD+IL +SVND
Sbjct: 20 DKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVND 79
Query: 82 PFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKA 141
FV AW K K++++ F+ DG+ ++T G + + G G +S R++ LV + V+
Sbjct: 80 TFVXNAW-KEDEKSENISFIPDGNGEFTEGXGXLVGKEDLGFGKRSWRYSXLVKNGVVEK 138
Query: 142 ANV---ESGGDFTVSSADDILKSL 162
+ E G F VS AD LK L
Sbjct: 139 XFIEPNEPGDPFKVSDADTXLKYL 162
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 32 LAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADEL-QSKGVDEILCISVNDPFVMKAWAK 90
++ KKVI+ G P F+PTC++ H+PG+I DEL + K VD+++ ++V++PF +AWAK
Sbjct: 66 ISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAK 125
Query: 91 TF--PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-- 146
+ +KF +D +T ++G EL + + G+ S R+A++V++ V A E+
Sbjct: 126 SLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-GV-YWSGRWAMVVENGIVTYAAKETNP 183
Query: 147 GGDFTVSSADDILKSL 162
G D TVSS + +L L
Sbjct: 184 GTDVTVSSVESVLAHL 199
>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSR|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
Length = 184
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 32 LAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADEL-QSKGVDEILCISVNDPFVMKAWAK 90
++ KKVI+ G P F+PTC++ H+PG+I DEL + K VD+++ ++V++PF +AWAK
Sbjct: 51 ISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAK 110
Query: 91 TF--PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-- 146
+ +KF +D +T ++G EL + + G+ S R+A++V++ V A E+
Sbjct: 111 SLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-GV-YWSGRWAMVVENGIVTYAAKETNP 168
Query: 147 GGDFTVSSADDILKSL 162
G D TVSS + +L L
Sbjct: 169 GTDVTVSSVESVLAHL 184
>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 176
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 32 LAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADEL-QSKGVDEILCISVNDPFVMKAWAK 90
++ KKVI+ G P F+PT ++ H+PG+I DEL + K VD+++ ++V++PF +AWAK
Sbjct: 43 ISENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAK 102
Query: 91 TF--PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-- 146
+ +KF +D +T ++G EL + + G+ S R+A++V++ V A E+
Sbjct: 103 SLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-GV-YWSGRWAMVVENGIVTYAAKETNP 160
Query: 147 GGDFTVSSADDILKSL 162
G D TVSS + +L L
Sbjct: 161 GTDVTVSSVESVLAHL 176
>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
pdb|1XIY|B Chain B, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
Length = 182
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADE-LQSKGVDEILCISVN 80
+ + H L KK++L +PG FTPT S K +PG+ E+ D ++ D+I CI+ N
Sbjct: 30 NDFTSIDTHELFNNKKILLISLPGAFTPTXSTKMIPGYEEEYDYFIKENNFDDIYCITNN 89
Query: 81 DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDD 136
D +V+K+W K+ K +K+++DG++ +T ++ + +D S +G + RF +V++
Sbjct: 90 DIYVLKSWFKSMDI-KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVEN 144
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP C+ + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 28 HYVSQGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 85
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 86 EWIERHIGVRIPFPIIADPQGTVARRLGL 114
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP C+ + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 29 HYVSQGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 86
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 87 EWIERHIGVRIPFPIIADPQGTVARRLGL 115
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP C+ + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 28 HYVSQGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 85
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 86 EWIERHIGVRIPFPIIADPQGTVARRLGL 114
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP C+ + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 28 HYVSQGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 85
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 86 EWIERHIGVRIPFPIIADPQGTVARRLGL 114
>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|B Chain B, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|C Chain C, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|D Chain D, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|E Chain E, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|F Chain F, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|G Chain G, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|H Chain H, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|I Chain I, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|J Chain J, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2X|A Chain A, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|B Chain B, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|C Chain C, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|D Chain D, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|E Chain E, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|F Chain F, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|G Chain G, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|H Chain H, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|I Chain I, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|J Chain J, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
Length = 249
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP + + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 28 HYVSQGKWFVLFSHPADFTPVSTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 85
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 86 EWIERHIGVRIPFPIIADPQGTVARRLGL 114
>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|B Chain B, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|C Chain C, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|D Chain D, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|E Chain E, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|F Chain F, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|G Chain G, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|H Chain H, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|I Chain I, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|J Chain J, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
Length = 249
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP + + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 28 HYVSQGKWFVLFSHPADFTPVXTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 85
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 86 EWIERHIGVRIPFPIIADPQGTVARRLGL 114
>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2NVL|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
Length = 250
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP + + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 29 HYVSQGKWFVLFSHPADFTPVXTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 86
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 87 EWIERHIGVRIPFPIIADPQGTVARRLGL 115
>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|B Chain B, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|C Chain C, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|D Chain D, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|E Chain E, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|F Chain F, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|G Chain G, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|H Chain H, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|I Chain I, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|J Chain J, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
Length = 250
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89
H ++ GK +LF P DFTP + + V F + ++ Q GVD ++ +SV+ F W
Sbjct: 29 HYVSQGKWFVLFSHPADFTPVXTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWK 86
Query: 90 KTFPKNKSVK----FLADGSAKYTHALGL 114
+ ++ V+ +AD LGL
Sbjct: 87 EWIERHIGVRIPFPIIADPQGTVARRLGL 115
>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|B Chain B, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|C Chain C, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|D Chain D, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|E Chain E, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|F Chain F, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|G Chain G, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|H Chain H, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|I Chain I, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|J Chain J, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|K Chain K, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|L Chain L, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
Length = 220
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94
GK ++LF P DFT C + + F +KA E E++ +SV+ F AW T K
Sbjct: 56 GKYLVLFFYPLDFTFVCPTE-IIAFSDKASEFHDVNC-EVVAVSVDSHFSHLAWINTPRK 113
Query: 95 N-----KSVKFLADGSAKYTHALGLELD---LSEKGL 123
N ++ L+D + + + G+ L+ L+ +GL
Sbjct: 114 NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGL 150
>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94
GK V+LF P DFT C + + F ++ +E S+ I C S + + AW K
Sbjct: 66 GKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC-STDSQYSHLAWDNLDRK 123
Query: 95 -----NKSVKFLADGSAKYTHALGL 114
+ + LAD + + A G+
Sbjct: 124 SGGLGHMKIPLLADRKQEISKAYGV 148
>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|B Chain B, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|C Chain C, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|E Chain E, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|F Chain F, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|G Chain G, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|H Chain H, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|I Chain I, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|J Chain J, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|K Chain K, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|L Chain L, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|M Chain M, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|N Chain N, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|O Chain O, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|P Chain P, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|Q Chain Q, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|R Chain R, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|S Chain S, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|T Chain T, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94
GK V+LF P DFT C + + F ++ +E S+ I C S + + AW K
Sbjct: 66 GKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC-STDSQYSHLAWDNLDRK 123
Query: 95 -----NKSVKFLADGSAKYTHALGL 114
+ + LAD + + A G+
Sbjct: 124 SGGLGHMKIPLLADRKQEISKAYGV 148
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 35 GKKVILFGVPGDFT---PTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKT 91
GK V+LF P DFT PT + F +A++ + G E+L +SV+ F AW T
Sbjct: 34 GKYVVLFFYPLDFTFVXPT----EIIAFSNRAEDFRKLGC-EVLGVSVDSQFTHLAWINT 88
Query: 92 FPKNK------SVKFLADGSAKYTHALGL 114
P+ + ++ LAD + + + G+
Sbjct: 89 -PRKEGGLGPLNIPLLADVTRRLSEDYGV 116
>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|B Chain B, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|C Chain C, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|D Chain D, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|E Chain E, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|F Chain F, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|G Chain G, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|H Chain H, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|I Chain I, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|J Chain J, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
Length = 222
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94
GK V+LF P DFT C + + F ++ +E S+ I C S + + AW K
Sbjct: 69 GKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC-STDSQYSHLAWDNLDRK 126
Query: 95 -----NKSVKFLADGSAKYTHALGL 114
+ + LAD + + A G+
Sbjct: 127 SGGLGHMKIPLLADRKQEISKAYGV 151
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 26 QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKA-DELQSKGVDEILCISVNDPFV 84
+VS+ K V+L+ P DFT C + + ++KA D + + V E+L SV+ F
Sbjct: 22 EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIA--LDKALDSFKERNV-ELLGCSVDSKFT 78
Query: 85 MKAWAKT 91
AW KT
Sbjct: 79 HLAWKKT 85
>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|B Chain B, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|C Chain C, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|D Chain D, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|E Chain E, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|F Chain F, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|G Chain G, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|H Chain H, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|I Chain I, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
pdb|1UUL|J Chain J, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi
In The Reduced State
Length = 202
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQS 68
P PD ++V++ S GK ++LF P DFT C + + F ++ E
Sbjct: 11 PAPDFNETALMPNGTFKKVALTSYK-GKWLVLFFYPMDFTFVCPTE-ICQFSDRVKEFSD 68
Query: 69 KGVDEILCISVNDPFVMKAWA 89
G E+L S++ + AW
Sbjct: 69 IGC-EVLACSMDSEYSHLAWT 88
>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear
Thiol Peroxidase
Length = 159
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGV-PGDFTPTCSLKHVPGFIEK 62
+ +GDP+PD +L+ D +S+ + +V++F V P TP S + GF +
Sbjct: 7 LEIGDPIPDLSLLNEDN----DSISLKKITENNRVVVFFVYPRASTP-GSTRQASGFRDN 61
Query: 63 ADELQ 67
EL+
Sbjct: 62 YQELK 66
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVI---LFGVPGDFTPTCSLKHVPG 58
+P G P PD T +E+D +V V+ LAA L+ V +PT ++ P
Sbjct: 4 SPPEEGSPDPDSTGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPL 63
Query: 59 FIEKADELQSKGVDE 73
+ A S G DE
Sbjct: 64 SVATALSALSLGADE 78
>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
Olei01672_1_465 From Oleispira Antarctica
Length = 468
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKA 63
+A+ + + GT + D QQ +LAAG + + F DF PT ++ +I KA
Sbjct: 136 LAIAEXIQSGTTTFADXYFYPQQSGEAALAAGIRAVCFAPVLDF-PTNYAQNADEYIRKA 194
Query: 64 DELQSK 69
E +
Sbjct: 195 IECNDR 200
>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|B Chain B, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|C Chain C, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|D Chain D, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|E Chain E, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
Length = 219
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 6 VGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGF---IEK 62
+ P P V +++S+ S GK V+LF P DFT C + V F + +
Sbjct: 28 INSPAPSFEEVALMPNGSFKKISLSSYK-GKWVVLFFYPLDFTFVCPTE-VIAFSDSVSR 85
Query: 63 ADELQSKGVDEILCISVNDPFVMKAW 88
+EL E+L S++ + W
Sbjct: 86 FNELNC----EVLACSIDSEYAHLQW 107
>pdb|1QXH|A Chain A, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|1QXH|B Chain B, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|3HVS|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3HVS|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
Length = 167
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 3 PIAVGDPLPDG-------TLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKH 55
P+ V + +P TLV D L V++ A GK+ +L P T C+
Sbjct: 10 PVTVANSIPQAGSKAQTFTLVAKD----LSDVTLGQFA-GKRKVLNIFPSIDTGVCA-AS 63
Query: 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115
V F + A E+ + V LCIS + PF + N + +A++ A G+
Sbjct: 64 VRKFNQLATEIDNTVV---LCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVA 120
Query: 116 L-DLSEKGLGTQS 127
+ D KGL ++
Sbjct: 121 IADGPLKGLAARA 133
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 26 QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG 70
++ + L KK + G+ D+ PT S+K +P F+ + KG
Sbjct: 34 EILIDILTRFKKEMKNGLSRDYNPTASVKMLPTFVRSIPDGSEKG 78
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 55 HVPGFIEKADELQSKGV 71
HVPGF + D LQS GV
Sbjct: 93 HVPGFFGEIDGLQSNGV 109
>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V32|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V41|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|E Chain E, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|F Chain F, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|G Chain G, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|H Chain H, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
Length = 233
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKA 63
I +G+ P+ F+ + ++ H +LF P DFTP S + I+
Sbjct: 3 ITLGEVFPN-----FEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPV-STTELGRVIQLE 56
Query: 64 DELQSKGVDEILCISVNDPFVMKAWAK 90
+ + +GV +++ +S ++ K W++
Sbjct: 57 GDFKKRGV-KLIALSCDNVADHKEWSE 82
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With
Glucose And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 42 GVPGDFTPTCSLKHVPGFIEKADELQSKG 70
G+ DF PT ++K +P F+ + KG
Sbjct: 50 GLSRDFNPTATVKMLPTFVRSIPDGSEKG 78
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 25.8 bits (55), Expect = 10.0, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 42 GVPGDFTPTCSLKHVPGFIEKADELQSKG 70
G+ DF PT ++K +P F+ + KG
Sbjct: 50 GLSRDFNPTATVKMLPTFVRSIPDGSEKG 78
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 25.8 bits (55), Expect = 10.0, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 42 GVPGDFTPTCSLKHVPGFIEKADELQSKG 70
G+ DF PT ++K +P F+ + KG
Sbjct: 50 GLSRDFNPTATVKMLPTFVRSIPDGSEKG 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,958,647
Number of Sequences: 62578
Number of extensions: 195766
Number of successful extensions: 865
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 49
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)