Query 038822
Match_columns 162
No_of_seqs 120 out of 1206
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 2.4E-37 5.2E-42 214.9 16.1 148 1-160 1-150 (157)
2 cd03013 PRX5_like Peroxiredoxi 100.0 7.2E-33 1.6E-37 195.1 17.1 151 6-160 1-155 (155)
3 PRK10382 alkyl hydroperoxide r 100.0 2E-32 4.3E-37 197.8 17.1 146 4-162 2-152 (187)
4 PRK13599 putative peroxiredoxi 100.0 2.3E-31 4.9E-36 196.3 17.1 143 4-161 2-151 (215)
5 PRK13190 putative peroxiredoxi 100.0 4.4E-31 9.6E-36 193.4 16.8 144 3-161 1-149 (202)
6 PRK13191 putative peroxiredoxi 100.0 4.6E-31 1E-35 194.7 16.8 147 3-162 6-157 (215)
7 PTZ00137 2-Cys peroxiredoxin; 100.0 4.6E-31 1E-35 198.6 16.9 147 3-162 67-221 (261)
8 TIGR03137 AhpC peroxiredoxin. 100.0 4.1E-31 8.9E-36 191.5 15.8 141 5-161 3-151 (187)
9 PRK09437 bcp thioredoxin-depen 100.0 6.4E-31 1.4E-35 184.9 16.1 149 1-161 1-151 (154)
10 PRK13189 peroxiredoxin; Provis 100.0 7.5E-31 1.6E-35 194.5 16.9 148 1-161 6-158 (222)
11 PRK15000 peroxidase; Provision 100.0 1.7E-30 3.8E-35 189.8 16.3 145 4-161 2-157 (200)
12 COG0450 AhpC Peroxiredoxin [Po 100.0 2.6E-30 5.6E-35 183.5 15.7 146 3-161 2-156 (194)
13 PRK00522 tpx lipid hydroperoxi 100.0 3.7E-30 7.9E-35 183.5 16.0 146 3-162 17-165 (167)
14 cd03018 PRX_AhpE_like Peroxire 100.0 4.3E-30 9.3E-35 179.4 15.2 143 4-160 1-148 (149)
15 cd03016 PRX_1cys Peroxiredoxin 100.0 9.1E-30 2E-34 186.7 16.2 141 6-161 1-149 (203)
16 cd03015 PRX_Typ2cys Peroxiredo 100.0 1.2E-29 2.5E-34 181.8 16.2 140 6-161 1-152 (173)
17 PTZ00253 tryparedoxin peroxida 100.0 1.4E-29 2.9E-34 185.3 15.8 150 1-162 3-160 (199)
18 cd03014 PRX_Atyp2cys Peroxired 100.0 3E-29 6.4E-34 174.3 15.7 140 5-160 1-142 (143)
19 cd03017 PRX_BCP Peroxiredoxin 100.0 2.7E-29 5.9E-34 173.6 14.5 139 8-160 1-140 (140)
20 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 9.1E-30 2E-34 172.4 11.8 123 6-142 1-124 (124)
21 PF08534 Redoxin: Redoxin; In 100.0 1.8E-29 3.9E-34 175.9 13.2 144 5-159 1-146 (146)
22 cd02971 PRX_family Peroxiredox 100.0 5.5E-28 1.2E-32 167.0 15.4 137 9-158 1-139 (140)
23 cd02970 PRX_like2 Peroxiredoxi 100.0 1.7E-27 3.8E-32 165.9 12.6 128 9-145 1-148 (149)
24 COG0678 AHP1 Peroxiredoxin [Po 99.9 2.6E-25 5.7E-30 150.9 16.1 159 4-162 3-165 (165)
25 PTZ00256 glutathione peroxidas 99.9 5.6E-26 1.2E-30 164.1 11.9 134 6-148 16-169 (183)
26 PTZ00056 glutathione peroxidas 99.9 1.5E-25 3.3E-30 163.7 13.9 130 4-147 13-165 (199)
27 PLN02412 probable glutathione 99.9 1.3E-25 2.8E-30 160.0 12.1 132 7-148 6-152 (167)
28 cd00340 GSH_Peroxidase Glutath 99.9 6.1E-26 1.3E-30 159.4 10.0 128 10-148 2-144 (152)
29 PLN02399 phospholipid hydroper 99.9 2.3E-25 5E-30 165.7 12.2 145 4-161 73-232 (236)
30 PRK15412 thiol:disulfide inter 99.9 1.9E-25 4E-30 161.7 10.7 130 4-160 39-173 (185)
31 KOG0541 Alkyl hydroperoxide re 99.9 1.6E-24 3.5E-29 147.9 14.1 162 1-162 6-171 (171)
32 cd03012 TlpA_like_DipZ_like Tl 99.9 6.3E-25 1.4E-29 149.6 10.8 107 23-146 12-125 (126)
33 cd02969 PRX_like1 Peroxiredoxi 99.9 2.3E-24 5.1E-29 154.0 13.4 119 7-145 1-128 (171)
34 KOG0852 Alkyl hydroperoxide re 99.9 6E-24 1.3E-28 147.7 14.5 149 2-161 2-156 (196)
35 PRK03147 thiol-disulfide oxido 99.9 3.2E-24 7E-29 153.2 13.7 135 3-161 34-170 (173)
36 TIGR00385 dsbE periplasmic pro 99.9 1.1E-24 2.5E-29 156.0 10.8 131 3-160 33-168 (173)
37 TIGR02540 gpx7 putative glutat 99.9 2.9E-24 6.3E-29 151.0 11.3 133 11-161 3-151 (153)
38 TIGR02661 MauD methylamine deh 99.9 3.4E-24 7.5E-29 155.5 11.8 130 3-161 45-177 (189)
39 cd02968 SCO SCO (an acronym fo 99.9 1.5E-23 3.2E-28 145.2 12.8 126 9-144 1-141 (142)
40 KOG0855 Alkyl hydroperoxide re 99.9 1.5E-23 3.3E-28 144.7 12.4 130 3-144 62-191 (211)
41 cd03010 TlpA_like_DsbE TlpA-li 99.9 5.5E-23 1.2E-27 140.0 10.9 117 8-148 1-122 (127)
42 KOG0854 Alkyl hydroperoxide re 99.9 2.8E-22 6E-27 139.7 11.9 150 2-161 4-163 (224)
43 cd02967 mauD Methylamine utili 99.9 5E-22 1.1E-26 132.7 11.8 110 11-143 1-112 (114)
44 PRK14018 trifunctional thiored 99.9 3.9E-21 8.5E-26 156.6 12.5 132 4-160 32-170 (521)
45 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2.3E-20 5E-25 126.2 13.1 111 11-148 1-114 (123)
46 cd02966 TlpA_like_family TlpA- 99.9 1.8E-20 3.8E-25 123.9 11.6 113 12-145 1-116 (116)
47 cd03008 TryX_like_RdCVF Trypar 99.8 5.6E-21 1.2E-25 132.7 9.1 103 25-144 16-130 (146)
48 TIGR01626 ytfJ_HI0045 conserve 99.8 1.4E-20 3.1E-25 135.0 11.5 126 4-149 23-169 (184)
49 PLN02919 haloacid dehalogenase 99.8 1.4E-20 3.1E-25 165.1 11.3 136 3-160 390-533 (1057)
50 COG2077 Tpx Peroxiredoxin [Pos 99.8 6.7E-20 1.5E-24 124.9 11.8 132 3-146 17-150 (158)
51 PRK10606 btuE putative glutath 99.8 3.7E-18 8E-23 122.9 14.5 85 8-103 3-96 (183)
52 cd03009 TryX_like_TryX_NRX Try 99.8 4.5E-19 9.8E-24 121.3 8.2 109 21-145 5-118 (131)
53 cd02964 TryX_like_family Trypa 99.8 8.8E-19 1.9E-23 120.2 8.5 105 25-145 8-118 (132)
54 PRK13728 conjugal transfer pro 99.8 1.2E-18 2.6E-23 124.5 8.3 107 5-148 50-159 (181)
55 PF13905 Thioredoxin_8: Thiore 99.6 5.4E-16 1.2E-20 100.2 7.2 89 35-139 1-95 (95)
56 PF02630 SCO1-SenC: SCO1/SenC; 99.6 7.5E-15 1.6E-19 105.2 9.5 131 6-145 28-173 (174)
57 TIGR02738 TrbB type-F conjugat 99.6 9.2E-15 2E-19 102.5 6.3 104 22-161 42-151 (153)
58 COG1999 Uncharacterized protei 99.4 3.5E-12 7.6E-17 93.7 13.3 127 12-146 49-190 (207)
59 cd02950 TxlA TRX-like protein 99.4 8.8E-13 1.9E-17 91.6 5.7 102 21-161 5-108 (142)
60 KOG2501 Thioredoxin, nucleored 99.4 1E-11 2.2E-16 86.2 10.7 108 21-144 19-133 (157)
61 cd02985 TRX_CDSP32 TRX family, 99.3 1.1E-11 2.4E-16 81.4 8.1 79 34-148 14-92 (103)
62 cd02963 TRX_DnaJ TRX domain, D 99.3 2.6E-11 5.7E-16 80.7 8.8 89 34-162 23-111 (111)
63 TIGR02740 TraF-like TraF-like 99.3 1E-11 2.2E-16 94.8 6.6 96 23-148 155-252 (271)
64 PF00837 T4_deiodinase: Iodoth 99.3 2.7E-11 5.8E-16 89.4 7.7 137 3-161 72-235 (237)
65 cd02948 TRX_NDPK TRX domain, T 99.2 1E-10 2.2E-15 76.6 7.7 87 34-162 16-102 (102)
66 PF05988 DUF899: Bacterial pro 99.2 1.1E-09 2.3E-14 79.5 12.8 116 23-146 54-175 (211)
67 cd02999 PDI_a_ERp44_like PDIa 99.2 8.9E-11 1.9E-15 76.7 6.5 76 30-145 14-89 (100)
68 cd02956 ybbN ybbN protein fami 99.1 2.2E-10 4.9E-15 73.8 7.2 75 34-146 11-85 (96)
69 cd02951 SoxW SoxW family; SoxW 99.1 5.5E-11 1.2E-15 80.5 3.8 100 34-161 12-117 (125)
70 KOG2792 Putative cytochrome C 99.1 3.3E-10 7.2E-15 84.0 7.9 127 12-144 121-259 (280)
71 COG0386 BtuE Glutathione perox 99.1 7.6E-09 1.6E-13 71.4 12.8 130 9-149 4-149 (162)
72 PRK09381 trxA thioredoxin; Pro 99.1 7.8E-10 1.7E-14 73.0 7.3 86 34-160 20-105 (109)
73 cd03000 PDI_a_TMX3 PDIa family 99.0 2.1E-09 4.5E-14 70.5 6.9 88 34-161 14-102 (104)
74 cd02994 PDI_a_TMX PDIa family, 99.0 2.4E-09 5.1E-14 69.7 7.1 76 31-145 13-88 (101)
75 cd02954 DIM1 Dim1 family; Dim1 99.0 4.6E-09 1E-13 69.9 7.9 76 34-147 13-88 (114)
76 PF13098 Thioredoxin_2: Thiore 99.0 1.8E-10 3.9E-15 76.3 1.1 97 34-148 4-104 (112)
77 PRK10996 thioredoxin 2; Provis 98.9 2.3E-09 5E-14 74.1 6.4 87 34-161 51-137 (139)
78 cd02949 TRX_NTR TRX domain, no 98.9 8E-09 1.7E-13 66.9 7.5 77 34-148 12-88 (97)
79 cd03005 PDI_a_ERp46 PDIa famil 98.9 6E-09 1.3E-13 67.6 6.3 75 35-146 16-92 (102)
80 PHA02278 thioredoxin-like prot 98.9 1.3E-08 2.7E-13 66.9 7.5 81 34-148 13-93 (103)
81 cd02953 DsbDgamma DsbD gamma f 98.9 4.7E-09 1E-13 68.7 5.4 79 34-146 10-93 (104)
82 cd02997 PDI_a_PDIR PDIa family 98.9 1.1E-08 2.4E-13 66.5 7.0 78 34-146 16-94 (104)
83 cd02984 TRX_PICOT TRX domain, 98.9 1.3E-08 2.8E-13 65.5 7.2 74 35-146 14-87 (97)
84 KOG0910 Thioredoxin-like prote 98.9 9.8E-09 2.1E-13 70.8 6.8 86 34-160 60-145 (150)
85 PTZ00051 thioredoxin; Provisio 98.8 1.5E-08 3.2E-13 65.5 6.2 73 35-146 18-90 (98)
86 KOG0907 Thioredoxin [Posttrans 98.8 3.4E-08 7.4E-13 65.1 7.7 83 35-160 21-103 (106)
87 KOG1651 Glutathione peroxidase 98.8 1.1E-07 2.3E-12 66.5 10.3 142 8-160 12-170 (171)
88 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 2.2E-08 4.7E-13 65.4 6.3 75 34-146 18-93 (104)
89 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 2.3E-08 5.1E-13 65.0 6.4 74 34-145 17-90 (101)
90 cd03002 PDI_a_MPD1_like PDI fa 98.8 2E-08 4.3E-13 66.1 5.8 69 34-138 17-85 (109)
91 TIGR01295 PedC_BrcD bacterioci 98.8 8.2E-08 1.8E-12 64.9 8.8 100 25-159 9-120 (122)
92 TIGR01068 thioredoxin thioredo 98.7 5.6E-08 1.2E-12 62.6 7.3 86 35-161 14-99 (101)
93 PF00085 Thioredoxin: Thioredo 98.7 3.7E-08 7.9E-13 63.8 6.4 85 35-160 17-101 (103)
94 PF00255 GSHPx: Glutathione pe 98.7 4.6E-08 9.9E-13 64.6 6.8 80 12-102 3-91 (108)
95 cd02996 PDI_a_ERp44 PDIa famil 98.7 1E-07 2.2E-12 62.8 8.5 70 34-140 17-91 (108)
96 cd02962 TMX2 TMX2 family; comp 98.7 5.3E-08 1.1E-12 68.3 7.3 81 34-145 46-126 (152)
97 cd03065 PDI_b_Calsequestrin_N 98.7 1.2E-07 2.5E-12 63.9 8.3 87 35-161 26-117 (120)
98 TIGR01126 pdi_dom protein disu 98.7 5.8E-08 1.3E-12 62.8 6.7 87 34-160 12-99 (102)
99 PF13911 AhpC-TSA_2: AhpC/TSA 98.7 4E-07 8.6E-12 60.7 10.0 84 59-145 2-113 (115)
100 cd02993 PDI_a_APS_reductase PD 98.7 7.8E-08 1.7E-12 63.6 6.3 45 34-81 20-64 (109)
101 cd02947 TRX_family TRX family; 98.7 2.5E-07 5.4E-12 58.0 8.3 75 35-148 10-84 (93)
102 cd02952 TRP14_like Human TRX-r 98.6 1.3E-07 2.8E-12 63.6 6.4 73 34-136 20-99 (119)
103 cd02965 HyaE HyaE family; HyaE 98.6 3.4E-07 7.4E-12 60.7 7.9 76 34-147 26-103 (111)
104 cd02957 Phd_like Phosducin (Ph 98.6 2.6E-07 5.7E-12 61.5 7.4 72 35-146 24-95 (113)
105 cd02986 DLP Dim1 family, Dim1- 98.6 2.6E-07 5.7E-12 61.3 7.2 76 34-147 13-88 (114)
106 cd02989 Phd_like_TxnDC9 Phosdu 98.6 3.8E-07 8.2E-12 60.8 7.8 74 34-146 21-94 (113)
107 cd03006 PDI_a_EFP1_N PDIa fami 98.6 3.7E-07 8E-12 60.9 7.5 73 34-144 28-101 (113)
108 PLN00410 U5 snRNP protein, DIM 98.6 3.2E-07 6.9E-12 63.4 7.0 76 34-146 22-98 (142)
109 cd02975 PfPDO_like_N Pyrococcu 98.5 4.6E-07 9.9E-12 60.4 7.4 85 35-161 22-108 (113)
110 PTZ00443 Thioredoxin domain-co 98.5 2.2E-07 4.8E-12 69.1 6.2 73 35-145 52-124 (224)
111 cd02998 PDI_a_ERp38 PDIa famil 98.5 2.3E-07 5E-12 60.2 5.4 74 35-144 18-93 (105)
112 cd02959 ERp19 Endoplasmic reti 98.5 1.6E-07 3.4E-12 63.1 4.0 43 34-80 18-60 (117)
113 KOG4498 Uncharacterized conser 98.5 1.1E-06 2.5E-11 62.5 8.1 135 21-161 36-193 (197)
114 PF13728 TraF: F plasmid trans 98.4 1.8E-06 3.9E-11 63.9 8.7 90 27-146 113-204 (215)
115 cd02987 Phd_like_Phd Phosducin 98.4 1.5E-06 3.1E-11 62.4 7.4 86 36-161 84-173 (175)
116 TIGR00411 redox_disulf_1 small 98.4 2.1E-06 4.5E-11 53.4 7.2 38 40-80 3-40 (82)
117 cd03001 PDI_a_P5 PDIa family, 98.4 2.1E-06 4.6E-11 55.6 7.5 66 35-138 18-83 (103)
118 cd02955 SSP411 TRX domain, SSP 98.4 2.8E-06 6E-11 57.6 8.2 97 34-161 14-117 (124)
119 COG4312 Uncharacterized protei 98.4 3.7E-06 8.1E-11 61.3 9.0 92 21-116 58-155 (247)
120 cd02961 PDI_a_family Protein D 98.4 8.1E-07 1.8E-11 56.7 5.1 74 34-144 14-89 (101)
121 COG3118 Thioredoxin domain-con 98.4 7.5E-07 1.6E-11 67.9 5.2 87 34-161 42-128 (304)
122 cd02992 PDI_a_QSOX PDIa family 98.3 2.2E-06 4.9E-11 57.1 6.8 69 35-138 19-89 (114)
123 PRK00293 dipZ thiol:disulfide 98.3 7.8E-07 1.7E-11 74.6 5.3 90 34-161 473-568 (571)
124 PRK13703 conjugal pilus assemb 98.3 3.7E-06 8E-11 63.3 7.6 91 28-148 137-229 (248)
125 TIGR02187 GlrX_arch Glutaredox 98.3 4.8E-06 1E-10 61.6 8.1 79 34-148 18-99 (215)
126 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 4.7E-06 1E-10 53.9 7.1 43 35-80 18-61 (104)
127 TIGR02739 TraF type-F conjugat 98.3 4.5E-06 9.8E-11 63.1 7.8 92 27-148 143-236 (256)
128 TIGR00424 APS_reduc 5'-adenyly 98.2 4.6E-06 9.9E-11 68.1 7.5 45 34-81 370-414 (463)
129 cd02988 Phd_like_VIAF Phosduci 98.2 6.9E-06 1.5E-10 59.8 7.2 85 35-161 102-190 (192)
130 TIGR01130 ER_PDI_fam protein d 98.2 4.9E-06 1.1E-10 67.6 7.1 75 34-145 17-94 (462)
131 PTZ00102 disulphide isomerase; 98.2 5.2E-06 1.1E-10 68.0 7.2 72 34-140 48-119 (477)
132 PTZ00102 disulphide isomerase; 98.1 8.5E-06 1.8E-10 66.7 6.8 88 34-160 374-462 (477)
133 PLN02309 5'-adenylylsulfate re 98.1 1.8E-05 3.9E-10 64.6 7.6 44 34-80 364-407 (457)
134 PTZ00062 glutaredoxin; Provisi 98.0 1.6E-05 3.5E-10 58.3 5.9 64 36-146 18-81 (204)
135 TIGR00412 redox_disulf_2 small 98.0 5.3E-05 1.1E-09 46.8 7.4 26 40-67 3-28 (76)
136 PF09695 YtfJ_HI0045: Bacteria 97.9 0.00016 3.6E-09 50.4 9.0 135 4-160 1-155 (160)
137 PF05176 ATP-synt_10: ATP10 pr 97.8 0.00012 2.7E-09 55.3 7.9 129 9-158 100-245 (252)
138 COG0526 TrxA Thiol-disulfide i 97.8 0.00021 4.6E-09 45.9 8.2 50 26-80 24-73 (127)
139 cd02958 UAS UAS family; UAS is 97.8 0.0002 4.3E-09 47.5 7.4 80 34-149 16-100 (114)
140 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 0.00023 4.9E-09 45.4 7.1 68 35-142 11-78 (89)
141 PF13899 Thioredoxin_7: Thiore 97.6 0.00019 4.1E-09 44.8 5.6 64 34-104 16-82 (82)
142 PF04592 SelP_N: Selenoprotein 97.6 0.00029 6.3E-09 52.2 7.1 118 27-160 19-143 (238)
143 TIGR02187 GlrX_arch Glutaredox 97.6 0.00055 1.2E-08 50.6 8.1 30 35-65 132-161 (215)
144 PHA02125 thioredoxin-like prot 97.5 0.00066 1.4E-08 41.6 7.0 60 39-145 2-61 (75)
145 cd01659 TRX_superfamily Thiore 97.5 0.00054 1.2E-08 38.9 6.1 44 40-88 2-45 (69)
146 cd02960 AGR Anterior Gradient 97.5 0.00026 5.6E-09 48.2 5.1 20 34-54 22-41 (130)
147 KOG0190 Protein disulfide isom 97.4 0.00035 7.7E-09 57.3 6.2 89 31-160 37-126 (493)
148 smart00594 UAS UAS domain. 97.1 0.0033 7.2E-08 42.3 7.0 20 34-54 26-45 (122)
149 cd02982 PDI_b'_family Protein 97.0 0.0011 2.4E-08 42.7 4.2 42 35-80 12-53 (103)
150 cd02973 TRX_GRX_like Thioredox 97.0 0.0019 4.2E-08 38.3 4.8 34 42-79 5-38 (67)
151 KOG0908 Thioredoxin-like prote 96.9 0.0018 4E-08 48.5 4.9 78 28-145 15-92 (288)
152 PRK10877 protein disulfide iso 96.9 0.003 6.4E-08 47.4 5.6 103 34-161 106-229 (232)
153 TIGR01130 ER_PDI_fam protein d 96.8 0.0013 2.8E-08 53.5 3.9 44 34-80 363-408 (462)
154 PF14595 Thioredoxin_9: Thiore 96.7 0.00015 3.3E-09 49.4 -2.1 46 29-80 36-81 (129)
155 PRK11509 hydrogenase-1 operon 96.6 0.022 4.9E-07 38.9 8.1 44 103-160 78-121 (132)
156 TIGR02196 GlrX_YruB Glutaredox 96.6 0.0088 1.9E-07 35.6 5.5 44 41-93 3-47 (74)
157 cd03007 PDI_a_ERp29_N PDIa fam 96.2 0.026 5.7E-07 37.7 6.5 79 28-138 10-91 (116)
158 TIGR02200 GlrX_actino Glutared 96.2 0.0091 2E-07 36.1 3.9 30 42-80 4-33 (77)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 96.0 0.023 5E-07 41.3 5.8 25 35-61 77-101 (197)
160 KOG0190 Protein disulfide isom 95.9 0.0089 1.9E-07 49.3 3.6 34 34-69 383-416 (493)
161 KOG3425 Uncharacterized conser 95.8 0.018 3.8E-07 38.5 4.1 51 28-81 18-75 (128)
162 PF06110 DUF953: Eukaryotic pr 95.7 0.0088 1.9E-07 40.2 2.3 46 34-82 18-69 (119)
163 cd02976 NrdH NrdH-redoxin (Nrd 95.6 0.031 6.7E-07 33.0 4.3 53 41-103 3-56 (73)
164 PRK11657 dsbG disulfide isomer 95.3 0.024 5.1E-07 43.0 3.9 28 35-64 117-144 (251)
165 TIGR02190 GlrX-dom Glutaredoxi 95.0 0.034 7.4E-07 34.2 3.3 52 42-103 12-63 (79)
166 TIGR02180 GRX_euk Glutaredoxin 94.9 0.044 9.6E-07 33.6 3.7 33 43-80 4-36 (84)
167 KOG0191 Thioredoxin/protein di 94.6 0.1 2.2E-06 42.0 5.9 53 35-94 47-99 (383)
168 TIGR00365 monothiol glutaredox 94.5 0.074 1.6E-06 34.2 4.1 41 31-80 7-50 (97)
169 PRK11200 grxA glutaredoxin 1; 94.4 0.079 1.7E-06 33.0 4.0 36 41-80 4-39 (85)
170 PF11009 DUF2847: Protein of u 94.3 0.13 2.9E-06 33.7 4.8 78 35-145 19-96 (105)
171 PF07976 Phe_hydrox_dim: Pheno 94.2 0.12 2.5E-06 36.9 4.8 107 3-115 29-165 (169)
172 cd03418 GRX_GRXb_1_3_like Glut 94.1 0.16 3.6E-06 30.4 4.8 53 41-102 3-56 (75)
173 COG4232 Thiol:disulfide interc 94.1 0.087 1.9E-06 44.2 4.5 69 34-105 473-544 (569)
174 PRK10329 glutaredoxin-like pro 93.9 0.15 3.3E-06 31.6 4.4 55 41-105 4-58 (81)
175 cd02066 GRX_family Glutaredoxi 93.8 0.093 2E-06 30.7 3.3 52 42-103 4-56 (72)
176 TIGR02194 GlrX_NrdH Glutaredox 93.7 0.14 3E-06 30.8 3.9 52 42-103 3-54 (72)
177 PF13778 DUF4174: Domain of un 93.5 0.049 1.1E-06 36.5 1.8 95 28-146 2-98 (118)
178 cd02991 UAS_ETEA UAS family, E 93.3 0.27 5.8E-06 32.8 5.1 76 34-146 16-99 (116)
179 PF13192 Thioredoxin_3: Thiore 93.1 0.18 3.9E-06 30.7 3.8 21 45-66 7-27 (76)
180 cd03419 GRX_GRXh_1_2_like Glut 93.0 0.09 2E-06 32.1 2.4 54 41-102 3-58 (82)
181 cd03029 GRX_hybridPRX5 Glutare 92.6 0.21 4.6E-06 29.8 3.6 30 42-80 5-34 (72)
182 TIGR02183 GRXA Glutaredoxin, G 92.4 0.14 3E-06 32.1 2.6 37 40-80 2-38 (86)
183 COG2143 Thioredoxin-related pr 91.6 2.3 4.9E-05 30.1 8.0 92 34-148 41-137 (182)
184 PRK10638 glutaredoxin 3; Provi 91.5 0.27 5.8E-06 30.4 3.2 51 42-102 6-57 (83)
185 COG0695 GrxC Glutaredoxin and 91.5 0.43 9.4E-06 29.5 4.1 51 45-105 8-61 (80)
186 TIGR03765 ICE_PFL_4695 integra 91.4 2 4.4E-05 28.1 7.1 56 56-115 37-92 (105)
187 PF00462 Glutaredoxin: Glutare 91.2 0.12 2.6E-06 29.8 1.3 37 42-87 3-39 (60)
188 cd02979 PHOX_C FAD-dependent P 91.2 3.6 7.8E-05 29.2 9.0 119 7-144 1-153 (167)
189 cd03027 GRX_DEP Glutaredoxin ( 91.0 0.34 7.5E-06 29.0 3.3 48 45-102 8-56 (73)
190 KOG1731 FAD-dependent sulfhydr 90.9 0.089 1.9E-06 44.0 0.6 61 37-101 59-120 (606)
191 cd02972 DsbA_family DsbA famil 90.9 0.57 1.2E-05 28.8 4.3 33 42-77 3-35 (98)
192 PF11072 DUF2859: Protein of u 90.5 3.1 6.7E-05 28.8 7.9 56 56-115 75-130 (142)
193 KOG0191 Thioredoxin/protein di 90.5 0.75 1.6E-05 37.0 5.6 54 38-94 165-219 (383)
194 TIGR02189 GlrX-like_plant Glut 90.2 0.22 4.7E-06 32.2 1.9 19 34-54 6-24 (99)
195 cd03032 ArsC_Spx Arsenate Redu 90.0 0.34 7.3E-06 32.1 2.8 64 41-115 3-70 (115)
196 TIGR03143 AhpF_homolog putativ 90.0 1.4 3.1E-05 37.2 7.1 30 35-65 475-504 (555)
197 cd03023 DsbA_Com1_like DsbA fa 89.9 0.29 6.3E-06 33.3 2.5 31 35-67 5-35 (154)
198 cd02977 ArsC_family Arsenate R 89.4 0.29 6.4E-06 31.7 2.1 64 41-115 2-69 (105)
199 TIGR02181 GRX_bact Glutaredoxi 89.3 0.5 1.1E-05 28.7 3.0 51 41-101 2-53 (79)
200 cd03028 GRX_PICOT_like Glutare 89.2 1.5 3.3E-05 27.5 5.3 40 32-80 4-46 (90)
201 TIGR01617 arsC_related transcr 88.4 0.49 1.1E-05 31.4 2.7 62 42-114 3-68 (117)
202 cd03036 ArsC_like Arsenate Red 88.3 0.063 1.4E-06 35.5 -1.7 63 42-115 3-69 (111)
203 PHA03050 glutaredoxin; Provisi 88.1 0.21 4.6E-06 32.8 0.8 20 33-54 10-29 (108)
204 PRK01655 spxA transcriptional 88.1 0.072 1.6E-06 36.3 -1.6 66 40-116 2-71 (131)
205 KOG0912 Thiol-disulfide isomer 88.0 0.34 7.3E-06 37.8 1.8 32 36-69 14-45 (375)
206 KOG0914 Thioredoxin-like prote 87.8 1.5 3.3E-05 32.6 5.0 33 37-71 146-178 (265)
207 PRK10824 glutaredoxin-4; Provi 87.4 0.98 2.1E-05 30.1 3.6 23 31-54 10-36 (115)
208 COG2179 Predicted hydrolase of 87.1 2.2 4.8E-05 30.4 5.3 45 49-94 41-85 (175)
209 KOG4277 Uncharacterized conser 87.0 1.8 3.8E-05 33.9 5.2 31 39-71 47-77 (468)
210 PF13462 Thioredoxin_4: Thiore 86.9 0.6 1.3E-05 32.2 2.5 49 27-79 5-54 (162)
211 PRK08132 FAD-dependent oxidore 86.5 7.5 0.00016 32.7 9.2 103 4-144 427-530 (547)
212 PRK06184 hypothetical protein; 85.7 5.1 0.00011 33.3 7.8 92 4-143 386-479 (502)
213 cd03060 GST_N_Omega_like GST_N 85.3 1.1 2.4E-05 26.6 2.8 53 43-105 4-56 (71)
214 PF06491 Disulph_isomer: Disul 84.8 3.6 7.9E-05 28.0 5.3 54 98-161 71-127 (136)
215 PRK12559 transcriptional regul 84.4 0.16 3.5E-06 34.6 -1.3 64 41-115 3-70 (131)
216 PRK06183 mhpA 3-(3-hydroxyphen 84.4 7.3 0.00016 32.7 8.2 105 4-143 411-516 (538)
217 PRK13344 spxA transcriptional 84.1 1.3 2.8E-05 30.2 3.0 64 41-115 3-70 (132)
218 PF03190 Thioredox_DsbH: Prote 83.7 1.1 2.3E-05 31.9 2.5 19 34-53 36-54 (163)
219 cd03019 DsbA_DsbA DsbA family, 82.4 2 4.4E-05 30.0 3.6 32 34-67 14-45 (178)
220 COG4545 Glutaredoxin-related p 81.6 2.1 4.5E-05 26.3 2.8 70 45-142 9-78 (85)
221 cd03041 GST_N_2GST_N GST_N fam 79.4 6.6 0.00014 23.6 4.7 53 42-104 4-57 (77)
222 PTZ00062 glutaredoxin; Provisi 79.2 7.1 0.00015 28.7 5.6 52 29-89 106-160 (204)
223 COG3054 Predicted transcriptio 78.5 3.8 8.3E-05 28.7 3.7 41 98-148 127-168 (184)
224 PF05768 DUF836: Glutaredoxin- 78.4 1.1 2.4E-05 27.6 1.0 56 40-105 2-57 (81)
225 PF02114 Phosducin: Phosducin; 78.3 7.8 0.00017 29.7 5.8 87 35-161 146-236 (265)
226 PF06053 DUF929: Domain of unk 75.7 4.2 9.1E-05 30.9 3.6 31 35-67 58-88 (249)
227 PRK12759 bifunctional gluaredo 74.2 3.4 7.3E-05 33.7 3.0 39 42-89 6-44 (410)
228 TIGR03759 conj_TIGR03759 integ 74.1 16 0.00035 26.8 6.1 71 37-115 110-185 (200)
229 cd03051 GST_N_GTT2_like GST_N 72.9 4.3 9.4E-05 23.7 2.6 13 42-54 3-15 (74)
230 KOG0911 Glutaredoxin-related p 72.9 4.8 0.0001 30.0 3.2 47 34-86 16-63 (227)
231 PRK08294 phenol 2-monooxygenas 72.7 18 0.0004 31.2 7.2 123 3-144 462-616 (634)
232 cd03035 ArsC_Yffb Arsenate Red 71.5 5.8 0.00013 25.8 3.1 62 41-115 2-67 (105)
233 COG3529 Predicted nucleic-acid 69.2 5 0.00011 23.4 2.1 27 42-75 7-33 (66)
234 PF13419 HAD_2: Haloacid dehal 69.1 25 0.00055 23.7 6.2 38 56-94 79-116 (176)
235 cd00570 GST_N_family Glutathio 68.7 3.9 8.6E-05 23.0 1.7 55 43-106 4-58 (71)
236 PRK10954 periplasmic protein d 68.2 3.3 7.2E-05 30.2 1.6 32 34-67 36-70 (207)
237 PLN03098 LPA1 LOW PSII ACCUMUL 68.0 19 0.00042 29.8 6.0 54 22-80 284-337 (453)
238 PRK05370 argininosuccinate syn 65.6 12 0.00026 30.9 4.3 70 29-112 5-81 (447)
239 KOG1752 Glutaredoxin and relat 64.2 3.8 8.1E-05 26.8 1.1 19 33-53 11-29 (104)
240 cd03045 GST_N_Delta_Epsilon GS 64.0 4.6 0.0001 23.7 1.4 55 43-105 4-59 (74)
241 cd03061 GST_N_CLIC GST_N famil 62.4 5.5 0.00012 25.3 1.6 50 47-107 21-71 (91)
242 COG3019 Predicted metal-bindin 60.8 19 0.00041 24.9 4.0 41 38-87 26-66 (149)
243 PF08821 CGGC: CGGC domain; I 60.3 34 0.00073 22.4 5.1 48 24-79 25-73 (107)
244 cd01427 HAD_like Haloacid deha 59.3 31 0.00066 22.0 4.9 38 56-94 26-63 (139)
245 TIGR01662 HAD-SF-IIIA HAD-supe 58.6 50 0.0011 21.7 6.2 38 56-94 27-72 (132)
246 cd03059 GST_N_SspA GST_N famil 58.0 13 0.00028 21.6 2.7 13 42-54 3-15 (73)
247 COG1393 ArsC Arsenate reductas 57.5 8.4 0.00018 25.7 1.9 64 41-115 4-71 (117)
248 KOG4614 Inner membrane protein 56.7 12 0.00027 28.2 2.8 29 129-160 249-278 (287)
249 PF01106 NifU: NifU-like domai 56.1 29 0.00062 20.6 3.9 42 22-67 14-56 (68)
250 COG1651 DsbG Protein-disulfide 55.4 14 0.0003 27.4 3.0 45 22-69 72-116 (244)
251 PRK05778 2-oxoglutarate ferred 54.8 22 0.00047 27.9 4.0 26 42-69 15-40 (301)
252 KOG0913 Thiol-disulfide isomer 54.2 1.8 3.9E-05 32.5 -1.9 40 29-71 34-73 (248)
253 cd03037 GST_N_GRX2 GST_N famil 52.5 26 0.00057 20.3 3.4 10 45-54 6-15 (71)
254 COG3769 Predicted hydrolase (H 51.8 36 0.00077 25.7 4.5 46 61-108 30-75 (274)
255 COG2999 GrxB Glutaredoxin 2 [P 50.9 6.6 0.00014 28.4 0.6 58 46-114 7-65 (215)
256 cd03052 GST_N_GDAP1 GST_N fami 50.0 8.9 0.00019 22.9 1.0 32 73-105 27-59 (73)
257 PF04723 GRDA: Glycine reducta 50.0 16 0.00035 25.1 2.3 40 44-85 36-81 (150)
258 PRK11869 2-oxoacid ferredoxin 49.0 21 0.00045 27.7 3.0 26 43-70 6-31 (280)
259 cd03025 DsbA_FrnE_like DsbA fa 48.8 27 0.00058 24.7 3.5 27 40-67 3-29 (193)
260 cd02983 P5_C P5 family, C-term 48.5 34 0.00073 23.1 3.8 42 107-160 70-112 (130)
261 PRK08244 hypothetical protein; 47.7 25 0.00055 29.1 3.6 36 4-43 391-427 (493)
262 cd03056 GST_N_4 GST_N family, 47.6 25 0.00054 20.3 2.7 10 45-54 6-15 (73)
263 PF09673 TrbC_Ftype: Type-F co 47.3 80 0.0017 20.7 5.9 56 57-115 11-70 (113)
264 cd03053 GST_N_Phi GST_N family 47.2 11 0.00024 22.2 1.1 58 40-105 2-60 (76)
265 TIGR01485 SPP_plant-cyano sucr 47.0 86 0.0019 23.3 6.2 41 52-94 20-60 (249)
266 PF01924 HypD: Hydrogenase for 45.2 39 0.00085 27.1 4.1 31 40-71 49-79 (355)
267 PRK15317 alkyl hydroperoxide r 45.2 45 0.00099 27.9 4.8 30 35-65 115-144 (517)
268 TIGR00995 3a0901s06TIC22 chlor 44.4 37 0.00079 26.2 3.7 82 8-105 80-161 (270)
269 PRK10026 arsenate reductase; P 43.9 4.2 9.1E-05 28.1 -1.3 63 42-115 6-72 (141)
270 cd03049 GST_N_3 GST_N family, 43.5 27 0.00058 20.3 2.4 12 43-54 4-15 (73)
271 PHA03398 viral phosphatase sup 43.1 89 0.0019 24.6 5.7 48 57-105 151-198 (303)
272 PF00702 Hydrolase: haloacid d 43.0 56 0.0012 23.1 4.5 58 56-115 129-194 (215)
273 PHA03075 glutaredoxin-like pro 43.0 9.5 0.00021 25.5 0.3 28 37-66 3-30 (123)
274 cd03055 GST_N_Omega GST_N fami 42.8 47 0.001 20.4 3.6 58 34-104 16-73 (89)
275 TIGR03830 CxxCG_CxxCG_HTH puta 42.5 29 0.00064 22.8 2.7 68 34-115 21-91 (127)
276 PF00875 DNA_photolyase: DNA p 41.4 59 0.0013 22.5 4.3 36 58-94 54-89 (165)
277 COG0552 FtsY Signal recognitio 41.2 1.8E+02 0.004 23.3 7.2 54 35-94 137-195 (340)
278 cd03034 ArsC_ArsC Arsenate Red 40.9 16 0.00034 24.0 1.2 63 42-115 3-69 (112)
279 cd03423 SirA SirA (also known 40.1 56 0.0012 19.2 3.4 50 51-103 9-58 (69)
280 PRK15062 hydrogenase isoenzyme 39.7 38 0.00083 27.3 3.3 31 40-71 54-84 (364)
281 TIGR03590 PseG pseudaminic aci 39.2 1.2E+02 0.0026 23.1 6.0 12 66-78 49-60 (279)
282 COG1636 Uncharacterized protei 38.9 1.6E+02 0.0034 21.7 6.1 41 46-94 10-61 (204)
283 smart00734 ZnF_Rad18 Rad18-lik 38.7 33 0.00071 16.2 1.8 9 47-56 3-11 (26)
284 PRK04011 peptide chain release 38.5 62 0.0013 26.5 4.4 33 58-92 368-400 (411)
285 PF03193 DUF258: Protein of un 38.4 73 0.0016 22.5 4.3 43 60-105 2-44 (161)
286 TIGR03831 YgiT_finger YgiT-typ 37.8 23 0.0005 18.7 1.3 21 34-54 21-41 (46)
287 TIGR01428 HAD_type_II 2-haloal 37.7 1E+02 0.0022 21.8 5.1 38 56-94 94-131 (198)
288 TIGR02177 PorB_KorB 2-oxoacid: 37.5 38 0.00082 26.3 3.0 23 46-70 2-24 (287)
289 COG0409 HypD Hydrogenase matur 37.4 43 0.00094 26.6 3.2 31 40-71 56-86 (364)
290 TIGR01684 viral_ppase viral ph 37.3 1.7E+02 0.0038 23.0 6.5 44 57-101 149-192 (301)
291 TIGR01449 PGP_bact 2-phosphogl 37.2 1.2E+02 0.0025 21.6 5.4 39 56-95 87-125 (213)
292 COG0546 Gph Predicted phosphat 37.1 1.3E+02 0.0029 21.8 5.8 43 56-99 91-133 (220)
293 TIGR01459 HAD-SF-IIA-hyp4 HAD- 37.0 1.7E+02 0.0037 21.6 6.8 47 56-103 26-75 (242)
294 TIGR00075 hypD hydrogenase exp 37.0 46 0.00099 26.9 3.3 31 40-71 60-90 (369)
295 PF10673 DUF2487: Protein of u 36.8 87 0.0019 21.7 4.3 24 58-81 72-95 (142)
296 cd00291 SirA_YedF_YeeD SirA, Y 36.7 67 0.0015 18.5 3.4 49 51-104 9-59 (69)
297 PF04278 Tic22: Tic22-like fam 36.6 1.2E+02 0.0025 23.5 5.5 82 8-105 73-161 (274)
298 PF13894 zf-C2H2_4: C2H2-type 36.4 23 0.00049 15.3 1.0 18 48-66 3-20 (24)
299 PF12710 HAD: haloacid dehalog 36.2 82 0.0018 21.9 4.4 33 61-94 96-128 (192)
300 PRK11031 guanosine pentaphosph 36.2 1.5E+02 0.0033 24.9 6.5 56 59-116 64-126 (496)
301 PF02541 Ppx-GppA: Ppx/GppA ph 36.1 1.1E+02 0.0023 23.4 5.2 57 58-116 43-106 (285)
302 PRK13225 phosphoglycolate phos 35.8 1.5E+02 0.0034 22.6 6.1 45 56-101 144-188 (273)
303 PRK13222 phosphoglycolate phos 35.8 1.6E+02 0.0034 21.1 5.9 44 56-100 95-138 (226)
304 PF05237 MoeZ_MoeB: MoeZ/MoeB 35.6 44 0.00096 20.5 2.6 31 23-54 53-83 (84)
305 PF06764 DUF1223: Protein of u 35.5 83 0.0018 23.1 4.3 51 39-94 1-66 (202)
306 PF04423 Rad50_zn_hook: Rad50 35.4 12 0.00026 21.0 -0.1 11 47-58 22-32 (54)
307 PRK11866 2-oxoacid ferredoxin 34.9 71 0.0015 24.7 4.1 23 44-68 6-28 (279)
308 PRK10854 exopolyphosphatase; P 34.5 1.7E+02 0.0037 24.6 6.6 56 59-116 69-131 (513)
309 KOG3414 Component of the U4/U6 34.3 1.5E+02 0.0032 20.3 4.9 44 35-82 23-66 (142)
310 cd03058 GST_N_Tau GST_N family 34.0 46 0.001 19.4 2.4 13 42-54 3-15 (74)
311 PF13417 GST_N_3: Glutathione 33.7 16 0.00035 21.6 0.3 52 44-105 3-54 (75)
312 TIGR00338 serB phosphoserine p 33.5 1.1E+02 0.0024 22.0 4.8 38 56-94 87-124 (219)
313 cd03033 ArsC_15kD Arsenate Red 33.3 16 0.00035 24.1 0.3 61 42-115 4-68 (113)
314 TIGR03351 PhnX-like phosphonat 33.3 1.2E+02 0.0026 21.8 4.9 38 56-94 89-126 (220)
315 TIGR01488 HAD-SF-IB Haloacid D 33.1 1.1E+02 0.0025 20.9 4.7 32 61-93 80-111 (177)
316 PF08497 Radical_SAM_N: Radica 33.1 1.8E+02 0.004 22.8 5.9 41 71-114 17-65 (302)
317 TIGR00014 arsC arsenate reduct 32.7 6.6 0.00014 25.9 -1.7 63 42-115 3-70 (114)
318 PRK09628 oorB 2-oxoglutarate-a 32.4 72 0.0016 24.7 3.7 28 40-69 11-38 (277)
319 PHA02762 hypothetical protein; 32.3 58 0.0012 18.5 2.3 17 131-147 31-48 (62)
320 TIGR03140 AhpF alkyl hydropero 32.2 96 0.0021 26.0 4.8 30 35-65 116-145 (515)
321 PF14768 RPA_interact_C: Repli 32.0 22 0.00048 22.0 0.7 8 47-54 1-8 (82)
322 TIGR01672 AphA HAD superfamily 31.9 1.1E+02 0.0023 23.1 4.5 42 59-101 119-164 (237)
323 PF11576 DUF3236: Protein of u 31.9 93 0.002 21.6 3.8 30 130-159 110-140 (154)
324 cd03420 SirA_RHOD_Pry_redox Si 31.8 93 0.002 18.2 3.5 48 51-103 9-58 (69)
325 PRK13288 pyrophosphatase PpaX; 31.8 1.9E+02 0.0042 20.6 6.1 43 56-99 84-126 (214)
326 PF06888 Put_Phosphatase: Puta 31.5 1.7E+02 0.0037 22.0 5.5 31 83-115 77-113 (234)
327 COG4469 CoiA Competence protei 31.2 22 0.00048 28.2 0.8 28 21-54 6-34 (342)
328 COG1503 eRF1 Peptide chain rel 31.1 1.2E+02 0.0025 25.1 4.8 19 62-81 370-388 (411)
329 PF03716 WCCH: WCCH motif ; I 30.9 26 0.00057 16.6 0.7 12 43-55 3-14 (25)
330 cd01460 vWA_midasin VWA_Midasi 30.8 1.6E+02 0.0035 22.6 5.4 30 51-82 176-205 (266)
331 PRK01018 50S ribosomal protein 30.7 1.5E+02 0.0032 18.9 5.8 52 61-115 23-78 (99)
332 TIGR01491 HAD-SF-IB-PSPlk HAD- 30.4 1.5E+02 0.0032 20.8 5.0 37 57-94 83-119 (201)
333 COG1631 RPL42A Ribosomal prote 30.4 22 0.00049 22.6 0.6 10 45-55 8-17 (94)
334 TIGR01490 HAD-SF-IB-hyp1 HAD-s 30.4 1.8E+02 0.004 20.4 5.5 37 57-94 90-126 (202)
335 PF12967 DUF3855: Domain of Un 30.3 21 0.00045 23.9 0.4 30 3-32 53-82 (158)
336 TIGR02460 osmo_MPGsynth mannos 30.1 1.5E+02 0.0032 24.0 5.1 62 50-115 57-128 (381)
337 TIGR02463 MPGP_rel mannosyl-3- 30.0 2.1E+02 0.0046 20.5 6.2 46 57-105 19-65 (221)
338 TIGR01698 PUNP purine nucleoti 30.0 2.4E+02 0.0053 21.3 6.1 65 9-79 27-91 (237)
339 PRK13738 conjugal transfer pil 29.7 2.4E+02 0.0051 21.0 8.4 53 70-143 146-200 (209)
340 TIGR00108 eRF peptide chain re 29.5 1.1E+02 0.0025 25.0 4.6 44 47-93 348-397 (409)
341 PRK14503 mannosyl-3-phosphogly 29.5 1.9E+02 0.0042 23.5 5.6 62 50-115 58-129 (393)
342 TIGR02742 TrbC_Ftype type-F co 29.4 1.9E+02 0.004 19.7 5.9 67 57-137 12-81 (130)
343 PF10588 NADH-G_4Fe-4S_3: NADH 29.4 58 0.0013 17.2 2.0 22 46-67 14-35 (41)
344 PRK13265 glycine/sarcosine/bet 29.1 44 0.00096 23.1 1.8 28 44-71 37-70 (154)
345 PF11197 DUF2835: Protein of u 29.0 65 0.0014 19.3 2.4 36 73-108 22-63 (68)
346 PLN02954 phosphoserine phospha 28.9 1.4E+02 0.003 21.5 4.7 38 56-94 86-123 (224)
347 TIGR01489 DKMTPPase-SF 2,3-dik 28.9 1.6E+02 0.0035 20.2 4.9 37 57-94 75-111 (188)
348 TIGR02253 CTE7 HAD superfamily 28.8 1.4E+02 0.0031 21.3 4.7 39 56-95 96-134 (221)
349 PRK13226 phosphoglycolate phos 28.7 1.9E+02 0.004 21.2 5.4 45 56-101 97-141 (229)
350 PF04244 DPRP: Deoxyribodipyri 28.1 1.8E+02 0.0039 21.7 5.1 47 56-105 48-101 (224)
351 COG3563 KpsC Capsule polysacch 28.0 2.7E+02 0.0058 23.8 6.4 95 42-161 338-433 (671)
352 KOG2116 Protein involved in pl 27.9 2.2E+02 0.0048 25.1 6.1 56 57-113 561-623 (738)
353 PF09631 Sen15: Sen15 protein; 27.9 57 0.0012 20.9 2.2 17 131-147 78-94 (101)
354 PLN02770 haloacid dehalogenase 27.8 2E+02 0.0043 21.4 5.4 39 56-95 110-148 (248)
355 TIGR02174 CXXU_selWTH selT/sel 27.8 1.4E+02 0.003 17.7 3.8 28 131-161 42-70 (72)
356 PRK10853 putative reductase; P 27.4 72 0.0016 21.1 2.7 60 42-114 4-67 (118)
357 PF02677 DUF208: Uncharacteriz 27.3 2.1E+02 0.0046 20.6 5.1 41 46-94 5-56 (176)
358 COG0694 Thioredoxin-like prote 27.2 1.7E+02 0.0038 18.7 4.8 43 22-67 28-72 (93)
359 PRK14988 GMP/IMP nucleotidase; 27.0 1.6E+02 0.0035 21.5 4.8 38 56-94 95-132 (224)
360 PRK10200 putative racemase; Pr 27.0 1.5E+02 0.0033 22.0 4.7 43 56-102 61-103 (230)
361 cd03422 YedF YedF is a bacteri 26.9 1.4E+02 0.003 17.5 4.0 48 51-101 9-56 (69)
362 PRK10826 2-deoxyglucose-6-phos 26.8 1.6E+02 0.0034 21.3 4.7 38 56-94 94-131 (222)
363 TIGR01454 AHBA_synth_RP 3-amin 26.4 2.4E+02 0.0052 20.0 5.6 39 56-95 77-115 (205)
364 TIGR01681 HAD-SF-IIIC HAD-supe 26.2 2E+02 0.0043 19.0 5.3 37 56-93 31-68 (128)
365 PF12874 zf-met: Zinc-finger o 26.1 16 0.00034 16.6 -0.6 20 47-67 2-21 (25)
366 COG5216 Uncharacterized conser 26.0 67 0.0014 18.7 1.9 25 22-53 28-52 (67)
367 PF04800 ETC_C1_NDUFA4: ETC co 25.2 1.2E+02 0.0027 19.6 3.3 29 75-105 51-79 (101)
368 PF02153 PDH: Prephenate dehyd 25.0 1.5E+02 0.0034 22.3 4.4 60 23-91 111-170 (258)
369 PF10453 NUFIP1: Nuclear fragi 24.9 46 0.001 19.1 1.2 25 76-102 14-38 (56)
370 PRK12702 mannosyl-3-phosphogly 24.8 2.9E+02 0.0063 21.8 5.8 44 59-105 23-66 (302)
371 CHL00104 rpl33 ribosomal prote 24.6 35 0.00076 20.4 0.6 8 47-55 51-58 (66)
372 PF02484 Rhabdo_NV: Rhabdoviru 24.5 31 0.00067 21.9 0.4 18 129-146 25-42 (111)
373 PRK00299 sulfur transfer prote 24.3 1.6E+02 0.0034 18.0 3.6 44 51-99 19-64 (81)
374 TIGR02826 RNR_activ_nrdG3 anae 24.3 90 0.0019 21.6 2.8 73 26-102 6-95 (147)
375 TIGR01686 FkbH FkbH-like domai 24.1 3.5E+02 0.0075 21.1 7.6 35 56-91 33-67 (320)
376 PF01206 TusA: Sulfurtransfera 24.0 53 0.0011 19.1 1.4 45 56-104 14-60 (70)
377 cd01452 VWA_26S_proteasome_sub 24.0 2.8E+02 0.0062 20.0 7.0 37 56-93 122-162 (187)
378 PLN03243 haloacid dehalogenase 24.0 2.2E+02 0.0048 21.5 5.1 39 56-95 111-149 (260)
379 PF03470 zf-XS: XS zinc finger 24.0 37 0.00081 18.4 0.6 7 48-54 1-7 (43)
380 PF01323 DSBA: DSBA-like thior 23.9 33 0.00072 24.1 0.6 32 41-76 3-34 (193)
381 TIGR02743 TraW type-F conjugat 23.8 3E+02 0.0065 20.3 7.9 19 97-115 166-184 (202)
382 PRK01103 formamidopyrimidine/5 23.6 32 0.0007 26.4 0.5 10 44-53 264-273 (274)
383 KOG4172 Predicted E3 ubiquitin 23.5 45 0.00098 19.1 0.9 18 45-63 43-60 (62)
384 PRK11867 2-oxoglutarate ferred 23.5 94 0.002 24.1 3.0 21 46-68 18-38 (286)
385 TIGR01675 plant-AP plant acid 23.4 2.6E+02 0.0057 21.0 5.2 38 56-94 122-162 (229)
386 PF10589 NADH_4Fe-4S: NADH-ubi 23.4 13 0.00028 20.3 -1.3 22 46-68 17-38 (46)
387 cd03040 GST_N_mPGES2 GST_N fam 23.4 33 0.00071 20.2 0.4 10 45-54 7-16 (77)
388 PF06953 ArsD: Arsenical resis 23.3 2.4E+02 0.0052 19.0 4.8 39 39-79 4-48 (123)
389 PRK00595 rpmG 50S ribosomal pr 23.2 39 0.00085 19.1 0.6 8 47-55 39-46 (53)
390 PRK13601 putative L7Ae-like ri 23.2 1.9E+02 0.0042 17.8 7.1 52 61-116 15-70 (82)
391 COG0560 SerB Phosphoserine pho 23.2 2.3E+02 0.0049 20.8 4.9 38 56-94 79-116 (212)
392 TIGR01023 rpmG_bact ribosomal 23.2 40 0.00087 19.2 0.7 8 47-55 40-47 (54)
393 PRK00504 rpmG 50S ribosomal pr 23.0 40 0.00087 18.9 0.7 8 47-55 36-43 (50)
394 TIGR01670 YrbI-phosphatas 3-de 23.0 2E+02 0.0044 19.6 4.4 32 62-94 36-67 (154)
395 TIGR00612 ispG_gcpE 1-hydroxy- 22.9 4.1E+02 0.0088 21.4 7.1 64 35-105 17-80 (346)
396 TIGR02652 conserved hypothetic 22.9 28 0.00061 24.0 0.0 18 42-60 6-23 (163)
397 TIGR03341 YhgI_GntY IscR-regul 22.8 2E+02 0.0043 20.9 4.4 43 22-68 124-168 (190)
398 TIGR02765 crypto_DASH cryptoch 22.7 3.8E+02 0.0082 21.8 6.6 37 57-94 61-97 (429)
399 PF10571 UPF0547: Uncharacteri 22.7 46 0.001 15.8 0.7 10 48-58 3-12 (26)
400 PF04134 DUF393: Protein of un 22.7 26 0.00057 22.6 -0.1 17 45-62 4-20 (114)
401 cd06404 PB1_aPKC PB1 domain is 22.7 75 0.0016 19.9 1.9 18 12-31 40-57 (83)
402 COG1490 Dtd D-Tyr-tRNAtyr deac 22.3 93 0.002 21.5 2.4 39 69-109 25-63 (145)
403 KOG3679 Predicted coiled-coil 22.3 3.1E+02 0.0066 22.6 5.7 80 66-148 157-241 (802)
404 PRK12359 flavodoxin FldB; Prov 22.0 2.2E+02 0.0049 20.2 4.5 10 85-94 104-113 (172)
405 TIGR02461 osmo_MPG_phos mannos 21.9 3.3E+02 0.0071 20.0 6.0 43 57-102 18-60 (225)
406 PF06750 DiS_P_DiS: Bacterial 21.9 31 0.00067 21.9 0.1 18 41-59 29-46 (92)
407 smart00451 ZnF_U1 U1-like zinc 21.8 49 0.0011 16.2 0.8 16 46-62 4-19 (35)
408 PRK07190 hypothetical protein; 21.8 92 0.002 26.0 2.8 34 4-42 381-415 (487)
409 KOG1842 FYVE finger-containing 21.7 52 0.0011 27.3 1.3 21 47-68 17-37 (505)
410 PF09897 DUF2124: Uncharacteri 21.7 2.9E+02 0.0063 19.3 5.1 60 37-104 81-140 (147)
411 COG0267 RpmG Ribosomal protein 21.6 40 0.00086 18.9 0.4 8 47-55 36-43 (50)
412 cd02511 Beta4Glucosyltransfera 21.5 3.2E+02 0.007 19.7 5.6 20 73-92 28-47 (229)
413 cd03067 PDI_b_PDIR_N PDIb fami 21.3 2.3E+02 0.0051 18.6 4.0 78 33-115 16-98 (112)
414 TIGR01685 MDP-1 magnesium-depe 21.2 3.1E+02 0.0067 19.5 5.1 38 56-94 47-85 (174)
415 cd03038 GST_N_etherase_LigE GS 21.2 45 0.00098 20.1 0.7 9 46-54 14-22 (84)
416 PRK00366 ispG 4-hydroxy-3-meth 21.0 4.6E+02 0.0099 21.3 6.8 64 35-105 25-88 (360)
417 COG0248 GppA Exopolyphosphatas 21.0 3.9E+02 0.0084 22.6 6.3 56 59-116 61-123 (492)
418 TIGR01422 phosphonatase phosph 20.9 1.6E+02 0.0034 21.8 3.7 38 56-94 101-138 (253)
419 TIGR01482 SPP-subfamily Sucros 20.9 3.2E+02 0.007 19.5 5.9 34 60-94 21-54 (225)
420 cd03031 GRX_GRX_like Glutaredo 20.6 1.8E+02 0.0039 20.2 3.6 25 47-80 15-39 (147)
421 KOG1515 Arylacetamide deacetyl 20.5 2E+02 0.0043 23.0 4.3 40 35-77 89-129 (336)
422 PF08235 LNS2: LNS2 (Lipin/Ned 20.4 2.9E+02 0.0063 19.5 4.7 73 21-106 5-85 (157)
423 PF10740 DUF2529: Protein of u 20.4 2.9E+02 0.0062 19.9 4.6 32 38-78 84-115 (172)
424 cd05017 SIS_PGI_PMI_1 The memb 20.4 2.5E+02 0.0055 18.1 5.9 36 56-94 56-91 (119)
425 cd02008 TPP_IOR_alpha Thiamine 20.3 1E+02 0.0022 21.8 2.4 24 44-69 3-26 (178)
426 PRK07758 hypothetical protein; 20.2 66 0.0014 20.7 1.3 12 42-53 16-27 (95)
427 COG2093 DNA-directed RNA polym 20.2 1.2E+02 0.0026 17.9 2.2 20 97-116 35-55 (64)
428 TIGR00099 Cof-subfamily Cof su 20.1 3.7E+02 0.008 19.8 6.0 36 58-94 20-55 (256)
429 PF09654 DUF2396: Protein of u 20.0 32 0.00069 23.7 -0.2 18 42-60 3-20 (161)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-37 Score=214.88 Aligned_cols=148 Identities=28% Similarity=0.381 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 1 MAPIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 1 m~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|.++++|+++|||+|+ +++|++++|+++ +|++|||+|||.++||.|..| +..+++++++|++.|+ +|++||.|
T Consensus 1 ~~~l~~G~~aPdF~Lp----~~~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~E-a~~Frd~~~ef~~~~a-~V~GIS~D 73 (157)
T COG1225 1 MMMLKVGDKAPDFELP----DQDGETVSLSDL-RGKPVVLYFYPKDFTPGCTTE-ACDFRDLLEEFEKLGA-VVLGISPD 73 (157)
T ss_pred CCcCCCCCcCCCeEee----cCCCCEEehHHh-cCCcEEEEECCCCCCCcchHH-HHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 5679999999999999 999999999998 999999999999999999998 9999999999999999 99999999
Q ss_pred CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCC-CccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHH
Q 038822 81 DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGL-GTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDI 158 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~-~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~i 158 (162)
+++.+++|.+++++ +|++|||+++++++.||+..+....|. ..-..|.+|||| +|+|+++|...... ..++++
T Consensus 74 s~~~~~~F~~k~~L--~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~---~h~~~v 148 (157)
T COG1225 74 SPKSHKKFAEKHGL--TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVK---GHADEV 148 (157)
T ss_pred CHHHHHHHHHHhCC--CceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCc---ccHHHH
Confidence 99999999999999 999999999999999999864322111 122457899999 99999999544332 445555
Q ss_pred Hh
Q 038822 159 LK 160 (162)
Q Consensus 159 l~ 160 (162)
++
T Consensus 149 l~ 150 (157)
T COG1225 149 LA 150 (157)
T ss_pred HH
Confidence 54
No 2
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=100.00 E-value=7.2e-33 Score=195.11 Aligned_cols=151 Identities=57% Similarity=0.964 Sum_probs=128.2
Q ss_pred CCCCCCCeeeeeeecCCC---ceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 6 VGDPLPDGTLVYFDEQDQ---LQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~---g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
+|+++|+|+++ +.+ |+.++|+++++|+++||+|||+.|||+|..||++.|++.+++|++.|+..|++||.|++
T Consensus 1 vG~~aPdF~l~----~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~ 76 (155)
T cd03013 1 VGDKLPNVTLF----EYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP 76 (155)
T ss_pred CCCcCCCeEee----eeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH
Confidence 69999999999 664 89999999548899999999999999999976999999999999999823999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeec-CCcceeCCHHHHHh
Q 038822 83 FVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-GGDFTVSSADDILK 160 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~-~~~~~~~~~~~il~ 160 (162)
+.+++|.+++++..+|++++|+++++++.||+..+....+.+....|++||||+|+|+|+++.. +...+.+.++.+|+
T Consensus 77 ~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~~~~~~~~~~~~~~~ 155 (155)
T cd03013 77 FVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGDVEVSSAENVLK 155 (155)
T ss_pred HHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEecCCCCccccCHHHhcC
Confidence 9999999999852379999999999999999986432123233346889999999999999986 55667788887764
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=2e-32 Score=197.81 Aligned_cols=146 Identities=21% Similarity=0.346 Sum_probs=125.4
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPF 83 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~ 83 (162)
+.+|+++|+|++.+.. +.+...++|+++ +||++||+|||++|||+|..| ++.|++++++|++.|+ +|++||.|+++
T Consensus 2 ~~~~~~~p~f~~~~~~-~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~e-l~~l~~~~~~f~~~g~-~vigIS~D~~~ 77 (187)
T PRK10382 2 SLINTKIKPFKNQAFK-NGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTE-LGDVADHYEELQKLGV-DVYSVSTDTHF 77 (187)
T ss_pred CccCCcCCCcEEEEEe-CCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHhCCC-EEEEEeCCCHH
Confidence 4899999999999654 567789999998 899999999999999999998 9999999999999999 99999999999
Q ss_pred HHHHHHHhC----CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHH
Q 038822 84 VMKAWAKTF----PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDI 158 (162)
Q Consensus 84 ~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~i 158 (162)
.+++|.+.. ++ +||+++|++++++++||+..+. .+. ..|++|||| +|+|+++++.... ..++++++
T Consensus 78 ~~~a~~~~~~~~~~l--~fpllsD~~~~ia~~ygv~~~~----~g~-~~r~tfIID~~G~I~~~~~~~~~--~~~~~~ei 148 (187)
T PRK10382 78 THKAWHSSSETIAKI--KYAMIGDPTGALTRNFDNMRED----EGL-ADRATFVVDPQGIIQAIEVTAEG--IGRDASDL 148 (187)
T ss_pred HHHHHHHhhccccCC--ceeEEEcCchHHHHHcCCCccc----CCc-eeeEEEEECCCCEEEEEEEeCCC--CCCCHHHH
Confidence 999999874 55 9999999999999999996431 133 347799999 9999999998622 13677877
Q ss_pred HhcC
Q 038822 159 LKSL 162 (162)
Q Consensus 159 l~~l 162 (162)
|+.|
T Consensus 149 l~~l 152 (187)
T PRK10382 149 LRKI 152 (187)
T ss_pred HHHH
Confidence 7653
No 4
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=2.3e-31 Score=196.25 Aligned_cols=143 Identities=25% Similarity=0.416 Sum_probs=121.8
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPF 83 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~ 83 (162)
+.+|+++|+|++. +.+|+...++++ +|||+||+|||++|||+|+.| ++.|++++++|+++|+ +|++||.|+.+
T Consensus 2 ~~~Gd~aPdF~l~----t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~E-l~~l~~~~~~f~~~gv-~vigIS~D~~~ 74 (215)
T PRK13599 2 KLLGEKFPSMEVV----TTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTE-FVEFARKANDFKELNT-ELIGLSVDQVF 74 (215)
T ss_pred CCCCCCCCCCEeE----CCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCC-EEEEEeCCCHH
Confidence 4899999999999 888998888997 899999999999999999998 9999999999999999 99999999999
Q ss_pred HHHHHHH------hCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHH
Q 038822 84 VMKAWAK------TFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSAD 156 (162)
Q Consensus 84 ~~~~~~~------~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~ 156 (162)
.+++|.+ .+++ +||+++|+++++++.||+..+.. +..+.|++|||| +|+|+++++++.. ..++++
T Consensus 75 ~~~~w~~~i~~~~~~~i--~fPil~D~~~~va~~yg~~~~~~----~~~~~R~tfIID~dG~Ir~~~~~p~~--~gr~~~ 146 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAI--PFPVIADDLGKVSNQLGMIHPGK----GTNTVRAVFIVDDKGTIRLIMYYPQE--VGRNVD 146 (215)
T ss_pred HHHHHHHhHHHhcCCCC--ceeEEECCCchHHHHcCCCccCC----CCceeeEEEEECCCCEEEEEEEcCCC--CCCCHH
Confidence 9988865 2345 89999999999999999974311 222467899999 9999999986522 236778
Q ss_pred HHHhc
Q 038822 157 DILKS 161 (162)
Q Consensus 157 ~il~~ 161 (162)
++|+.
T Consensus 147 eilr~ 151 (215)
T PRK13599 147 EILRA 151 (215)
T ss_pred HHHHH
Confidence 87765
No 5
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.98 E-value=4.4e-31 Score=193.39 Aligned_cols=144 Identities=24% Similarity=0.432 Sum_probs=121.0
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
++.+|+++|+|+++ +..| .++|+++ +||++||+|||++|||+|+.| ++.|++++++|+++|+ +|++||.|+.
T Consensus 1 ~~~vG~~aP~F~~~----~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~E-l~~l~~~~~~f~~~~~-~vi~vS~D~~ 72 (202)
T PRK13190 1 PVKLGQKAPDFTVN----TTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTE-FIAFSRRYEDFKKLGV-ELVGLSVDSI 72 (202)
T ss_pred CCCCCCCCCCcEEe----cCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHH-HHHHHHHHHHHHHCCC-EEEEEeCCCH
Confidence 46899999999999 6666 7999998 899999999999999999998 9999999999999999 9999999999
Q ss_pred HHHHHHHHh----CCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHH
Q 038822 83 FVMKAWAKT----FPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADD 157 (162)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~ 157 (162)
+.+.+|.++ ++...+||+++|+++++++.||+..+ ..+ . +.|.+|||| +|+|+++..++.. ..+++++
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~--~~g--~-~~p~~fiId~~G~I~~~~~~~~~--~gr~~~e 145 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDE--NSG--A-TVRGVFIIDPNQIVRWMIYYPAE--TGRNIDE 145 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccc--cCC--c-EEeEEEEECCCCEEEEEEEeCCC--CCCCHHH
Confidence 998888753 44223899999999999999999643 112 2 346799999 9999999987633 2467777
Q ss_pred HHhc
Q 038822 158 ILKS 161 (162)
Q Consensus 158 il~~ 161 (162)
+++.
T Consensus 146 llr~ 149 (202)
T PRK13190 146 IIRI 149 (202)
T ss_pred HHHH
Confidence 7764
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.98 E-value=4.6e-31 Score=194.68 Aligned_cols=147 Identities=21% Similarity=0.351 Sum_probs=120.5
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
++.+|+++|+|+++ +.+|+ +++++.++|||+||+|||++|||+|..| ++.|++++++|+++|+ +|++||.|+.
T Consensus 6 ~~~iG~~aPdF~l~----~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tE-l~~l~~~~~ef~~~g~-~VigvS~Ds~ 78 (215)
T PRK13191 6 IPLIGEKFPEMEVI----TTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTE-FYSFAKKYEEFKKLNT-ELIGLSVDSN 78 (215)
T ss_pred cccCCCcCCCCEee----cCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCC-EEEEEECCCH
Confidence 46799999999999 77776 5664433899999999999999999998 9999999999999999 9999999999
Q ss_pred HHHHHHHHh----CCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHH
Q 038822 83 FVMKAWAKT----FPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADD 157 (162)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~ 157 (162)
..+++|.+. .+...+||+++|+++++++.||+..+.. .+ .+.|.+|||| +|+|+++++++.. ..++++|
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~---~~-~~~r~tfIID~~G~Ir~~~~~~~~--~gr~~~e 152 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES---ST-ATVRAVFIVDDKGTVRLILYYPME--IGRNIDE 152 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCccccc---CC-ceeEEEEEECCCCEEEEEEecCCC--CCCCHHH
Confidence 999888651 1222389999999999999999975311 11 2457899999 9999999998733 2478888
Q ss_pred HHhcC
Q 038822 158 ILKSL 162 (162)
Q Consensus 158 il~~l 162 (162)
+|+.|
T Consensus 153 ilr~l 157 (215)
T PRK13191 153 ILRAI 157 (215)
T ss_pred HHHHH
Confidence 88753
No 7
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.98 E-value=4.6e-31 Score=198.56 Aligned_cols=147 Identities=31% Similarity=0.415 Sum_probs=122.5
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
++.+|+++|+|+++... +.++..++|+++.+|+++||+|||++|||+|..| ++.|++++++|+++|+ +|++||.|++
T Consensus 67 ~~~vGd~aPdF~l~~~~-~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~E-l~~l~~~~~ef~~~gv-~VigIS~Ds~ 143 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALL-NDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSE-LLGFSERLKEFEERGV-KVLGVSVDSP 143 (261)
T ss_pred cccCCCCCCCCEeeccc-CCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCC-EEEEEECCCH
Confidence 46899999999998211 2444679999976889999999999999999998 9999999999999999 9999999999
Q ss_pred HHHHHHHHh-------CCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCC
Q 038822 83 FVMKAWAKT-------FPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSS 154 (162)
Q Consensus 83 ~~~~~~~~~-------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~ 154 (162)
+.+++|.+. .++ +||+++|++++++++||+..+ . +. +.|++|||| +|+|++++.++.. ..+.
T Consensus 144 ~~h~aw~~~~~~~~g~~~l--~fPlLsD~~~~iakayGv~~~---~--g~-a~R~tFIID~dG~I~~~~~~~~~--~gr~ 213 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPL--KFPLFSDISREVSKSFGLLRD---E--GF-SHRASVLVDKAGVVKHVAVYDLG--LGRS 213 (261)
T ss_pred HHHHHHHhhhhhhccccCc--ceEEEEcCChHHHHHcCCCCc---C--Cc-eecEEEEECCCCEEEEEEEeCCC--CCCC
Confidence 999998874 455 899999999999999999742 1 22 346799999 9999999987632 2367
Q ss_pred HHHHHhcC
Q 038822 155 ADDILKSL 162 (162)
Q Consensus 155 ~~~il~~l 162 (162)
++|+|+.|
T Consensus 214 v~eiLr~l 221 (261)
T PTZ00137 214 VDETLRLF 221 (261)
T ss_pred HHHHHHHH
Confidence 88887753
No 8
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.98 E-value=4.1e-31 Score=191.52 Aligned_cols=141 Identities=23% Similarity=0.398 Sum_probs=119.4
Q ss_pred CCCCCCCCeeeeeeecC-CCce--eEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 5 AVGDPLPDGTLVYFDEQ-DQLQ--QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 5 ~~G~~~P~f~l~~~~~~-~~g~--~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
.+|+++|+|+++ + .+|+ .++++++ +||++||+|||++|||+|+.| ++.|++++++|+++|+ +|++||.|+
T Consensus 3 ~~G~~aP~f~l~----~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~e-l~~l~~~~~~~~~~gv-~vi~VS~D~ 75 (187)
T TIGR03137 3 LINTEIKPFKAT----AYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTE-LEDLADKYAELKKLGV-EVYSVSTDT 75 (187)
T ss_pred ccCCcCCCcEee----eccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHH-HHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 689999999999 5 4565 7899998 899999999999999999998 9999999999999999 999999999
Q ss_pred HHHHHHHHHhC----CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHH
Q 038822 82 PFVMKAWAKTF----PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSAD 156 (162)
Q Consensus 82 ~~~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~ 156 (162)
++.+++|.+.. ++ +||+++|+++++++.||+..+. . +. ..|++||+| +|+|++++++.... .+.++
T Consensus 76 ~~~~~~~~~~~~~~~~l--~fpllsD~~~~~a~~~gv~~~~--~--g~-~~p~tfiID~~G~I~~~~~~~~~~--~~~~~ 146 (187)
T TIGR03137 76 HFVHKAWHDTSEAIGKI--TYPMLGDPTGVLTRNFGVLIEE--A--GL-ADRGTFVIDPEGVIQAVEITDNGI--GRDAS 146 (187)
T ss_pred HHHHHHHHhhhhhccCc--ceeEEECCccHHHHHhCCcccC--C--Cc-eeeEEEEECCCCEEEEEEEeCCCC--CCCHH
Confidence 99999998764 45 8999999999999999997431 1 22 246799999 99999999875321 25777
Q ss_pred HHHhc
Q 038822 157 DILKS 161 (162)
Q Consensus 157 ~il~~ 161 (162)
++|+.
T Consensus 147 ~ll~~ 151 (187)
T TIGR03137 147 ELLRK 151 (187)
T ss_pred HHHHH
Confidence 77764
No 9
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.97 E-value=6.4e-31 Score=184.90 Aligned_cols=149 Identities=25% Similarity=0.384 Sum_probs=127.6
Q ss_pred CCCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 1 MAPIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 1 m~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|+.+++|+++|+|+++ +.+|+.++|+++ +||++||+||++.|||.|+.+ ++.+++++++++++++ ++++||.|
T Consensus 1 ~~~~~~g~~~p~f~l~----~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~-~~~l~~~~~~~~~~~v-~vi~Is~d 73 (154)
T PRK09437 1 MNPLKAGDIAPKFSLP----DQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQ-ACGLRDNMDELKKAGV-VVLGISTD 73 (154)
T ss_pred CCcCCCCCcCCCcEee----CCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 8899999999999999 899999999998 999999999988899999998 9999999999999999 99999999
Q ss_pred CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCc-cceeEEEEEc-CCeEEEEEeecCCcceeCCHHHH
Q 038822 81 DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGT-QSRRFALLVD-DLKVKAANVESGGDFTVSSADDI 158 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~-~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~i 158 (162)
+++.+++|.++++. +|++++|+++.+++.||+....+..+.+. ..+|.+||+| +|+|++++.+.... +..+++
T Consensus 74 ~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~---~~~~~~ 148 (154)
T PRK09437 74 KPEKLSRFAEKELL--NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS---NHHDVV 148 (154)
T ss_pred CHHHHHHHHHHhCC--CCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc---hhHHHH
Confidence 99999999999998 99999999999999999875432211111 1235689999 99999999875332 456666
Q ss_pred Hhc
Q 038822 159 LKS 161 (162)
Q Consensus 159 l~~ 161 (162)
|+.
T Consensus 149 ~~~ 151 (154)
T PRK09437 149 LDY 151 (154)
T ss_pred HHH
Confidence 654
No 10
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=7.5e-31 Score=194.52 Aligned_cols=148 Identities=21% Similarity=0.358 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 1 MAPIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 1 m~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|.++.+|+++|+|+++ +..| .++++++++|||+||+|||++|||+|..| ++.|++++++|+++|+ +|++||.|
T Consensus 6 ~~~~~vG~~aPdF~~~----~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tE-l~~l~~~~~ef~~~~v-~VigvS~D 78 (222)
T PRK13189 6 IRMPLIGDKFPEFEVK----TTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTE-FVAFQKRYDEFRELNT-ELIGLSID 78 (222)
T ss_pred cccccCCCcCCCcEeE----cCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHH-HHHHHHHHHHHHHcCC-EEEEEECC
Confidence 3567899999999999 6666 47888755899999999999999999998 9999999999999999 99999999
Q ss_pred CHHHHHHHHHhC----CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCH
Q 038822 81 DPFVMKAWAKTF----PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSA 155 (162)
Q Consensus 81 ~~~~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~ 155 (162)
+.+.+.+|.+.. +...+||+++|+++++++.||+..... + + .+.|.+|||| +|+|+++++++.. ..+++
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~--~-~-~~~r~tfIID~~G~Ir~~~~~~~~--~gr~~ 152 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK--G-T-NTVRAVFIIDPKGIIRAILYYPQE--VGRNM 152 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc--C-C-CceeEEEEECCCCeEEEEEecCCC--CCCCH
Confidence 999999888752 222289999999999999999974211 1 1 1457799999 9999999987632 23567
Q ss_pred HHHHhc
Q 038822 156 DDILKS 161 (162)
Q Consensus 156 ~~il~~ 161 (162)
+++|+.
T Consensus 153 ~eilr~ 158 (222)
T PRK13189 153 DEILRL 158 (222)
T ss_pred HHHHHH
Confidence 777664
No 11
>PRK15000 peroxidase; Provisional
Probab=99.97 E-value=1.7e-30 Score=189.82 Aligned_cols=145 Identities=26% Similarity=0.373 Sum_probs=118.9
Q ss_pred CCCCCCCCCeeeeeeecCC--Cce---eEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE
Q 038822 4 IAVGDPLPDGTLVYFDEQD--QLQ---QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS 78 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~--~g~---~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is 78 (162)
..+|+++|+|+++ +. +|+ .++|+++.+|||+||+||+++|||+|+.| +++|++++++|+++|+ +|++||
T Consensus 2 ~~vg~~aPdF~~~----~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~E-l~~l~~~~~~f~~~g~-~vigvS 75 (200)
T PRK15000 2 VLVTRQAPDFTAA----AVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSE-LIAFDKRYEEFQKRGV-EVVGVS 75 (200)
T ss_pred CcCCCcCCCCEee----cccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCC-EEEEEE
Confidence 3689999999999 43 333 56778876899999999999999999998 9999999999999999 999999
Q ss_pred cCCHHHHHHHHHh----CCC-CCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCccee
Q 038822 79 VNDPFVMKAWAKT----FPK-NKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTV 152 (162)
Q Consensus 79 ~d~~~~~~~~~~~----~~~-~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~ 152 (162)
.|+.+.+++|.+. .+. ..+||+++|+++++++.||+..+ ..+. +.|.+|||| +|+|++.+.++.. ..
T Consensus 76 ~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~--~~g~---~~r~tfiID~~G~I~~~~~~~~~--~g 148 (200)
T PRK15000 76 FDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHP--DEGV---ALRGSFLIDANGIVRHQVVNDLP--LG 148 (200)
T ss_pred CCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccC--CCCc---EEeEEEEECCCCEEEEEEecCCC--CC
Confidence 9999999888654 332 12899999999999999999753 2222 346799999 9999999998633 13
Q ss_pred CCHHHHHhc
Q 038822 153 SSADDILKS 161 (162)
Q Consensus 153 ~~~~~il~~ 161 (162)
++++++|+.
T Consensus 149 r~~~eilr~ 157 (200)
T PRK15000 149 RNIDEMLRM 157 (200)
T ss_pred CCHHHHHHH
Confidence 678888765
No 12
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-30 Score=183.47 Aligned_cols=146 Identities=26% Similarity=0.369 Sum_probs=125.9
Q ss_pred CCCCCCCCCCeeeeeeecCCCc---eeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQL---QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV 79 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g---~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~ 79 (162)
++.+|+++|+|++++.. .| .+++|+++ .|||+||+|||++++|+|..| +..+++++++|+++|+ +|+++|.
T Consensus 2 ~~lIg~~aP~F~~~a~~---~~~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTE-i~af~~~y~eF~~~g~-eVigvS~ 75 (194)
T COG0450 2 MSLIGKKAPDFTANAVL---GGEIFEEITLSDY-YGKWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGV-EVIGVST 75 (194)
T ss_pred ccccCCcCCCcEEEEEe---cCceeeEEechhh-cCcEEEEEeccCCCCccCcch-HHHHHhhhHHHHHcCC-EEEEEec
Confidence 47899999999999541 44 59999998 679999999999999999998 9999999999999999 9999999
Q ss_pred CCHHHHHHHHHh----CCCC-CceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeC
Q 038822 80 NDPFVMKAWAKT----FPKN-KSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVS 153 (162)
Q Consensus 80 d~~~~~~~~~~~----~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~ 153 (162)
|+.+.+.+|... .+.. .+||+++|+++++++.||+..+. . |. +.|.+|||| +|+|+++.+++.+ ..+
T Consensus 76 Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~--~--g~-a~R~~FIIDp~g~ir~~~v~~~~--iGR 148 (194)
T COG0450 76 DSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPE--E--GL-ALRGTFIIDPDGVIRHILVNPLT--IGR 148 (194)
T ss_pred CcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccC--C--Cc-ceeEEEEECCCCeEEEEEEecCC--CCc
Confidence 999999999988 4422 38999999999999999999642 2 22 457799999 9999999998744 248
Q ss_pred CHHHHHhc
Q 038822 154 SADDILKS 161 (162)
Q Consensus 154 ~~~~il~~ 161 (162)
+++|+|+.
T Consensus 149 n~dEilR~ 156 (194)
T COG0450 149 NVDEILRV 156 (194)
T ss_pred CHHHHHHH
Confidence 88888875
No 13
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.97 E-value=3.7e-30 Score=183.47 Aligned_cols=146 Identities=29% Similarity=0.367 Sum_probs=122.0
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
++.+|+++|+|+++ +.+|+.++|+++ +||++||+||++.|||+|..| ++.|+++++++ .++ +|++||.|++
T Consensus 17 ~~~~G~~~P~f~l~----~~~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e-~~~l~~~~~~~--~~~-~vv~vs~D~~ 87 (167)
T PRK00522 17 LPQVGDKAPDFTLV----ANDLSDVSLADF-AGKRKVLNIFPSIDTGVCATS-VRKFNQEAAEL--DNT-VVLCISADLP 87 (167)
T ss_pred CCCCCCCCCCeEEE----cCCCcEEehHHh-CCCEEEEEEEcCCCCCccHHH-HHHHHHHHHHc--CCc-EEEEEeCCCH
Confidence 46899999999999 889999999997 899999999977669999998 99999999998 388 9999999999
Q ss_pred HHHHHHHHhCCCCCc-eEEEEc-CCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHH
Q 038822 83 FVMKAWAKTFPKNKS-VKFLAD-GSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDIL 159 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~l~D-~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il 159 (162)
+.+++|.+++++ + +++++| +++.+++.||+...... ..+.+ .|.+|||| +|+|++.++..... +...++++|
T Consensus 88 ~~~~~f~~~~~~--~~~~~lsD~~~~~~~~~~gv~~~~~~-~~g~~-~r~tfvId~~G~I~~~~~~~~~~-~~~~~~~~l 162 (167)
T PRK00522 88 FAQKRFCGAEGL--ENVITLSDFRDHSFGKAYGVAIAEGP-LKGLL-ARAVFVLDENNKVVYSELVPEIT-NEPDYDAAL 162 (167)
T ss_pred HHHHHHHHhCCC--CCceEeecCCccHHHHHhCCeecccc-cCCce-eeEEEEECCCCeEEEEEECCCcC-CCCCHHHHH
Confidence 999999999997 5 899999 55699999999743211 12333 46799999 99999999865221 346788888
Q ss_pred hcC
Q 038822 160 KSL 162 (162)
Q Consensus 160 ~~l 162 (162)
+.|
T Consensus 163 ~~l 165 (167)
T PRK00522 163 AAL 165 (167)
T ss_pred HHh
Confidence 754
No 14
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.97 E-value=4.3e-30 Score=179.43 Aligned_cols=143 Identities=28% Similarity=0.429 Sum_probs=124.3
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
|++|+++|+|++. +.+|+.++|+++ +| |++||+||+++|||.|+.+ ++.+++++++++++++ ++++||.|++
T Consensus 1 ~~~G~~~p~~~l~----~~~g~~v~l~~~-~g~k~~vl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~v-~vi~vs~d~~ 73 (149)
T cd03018 1 LEVGDKAPDFELP----DQNGQEVRLSEF-RGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGA-EVLGISVDSP 73 (149)
T ss_pred CCCCCcCCCcEec----CCCCCEEeHHHH-cCCCeEEEEEeCCCCCccHHHH-HHHHHHHHHHHHhCCC-EEEEecCCCH
Confidence 5799999999999 889999999998 88 8999999999999999997 9999999999999999 9999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEcCC--chHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecC-CcceeCCHHHH
Q 038822 83 FVMKAWAKTFPKNKSVKFLADGS--AKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESG-GDFTVSSADDI 158 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~-~~~~~~~~~~i 158 (162)
+.+++|.+++++ +|++++|++ +++++.||+..... +.+ .|.+||+| +|+|++.+.+.. ...+..+++++
T Consensus 74 ~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~g~~~~~~----~~~-~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~ 146 (149)
T cd03018 74 FSLRAWAEENGL--TFPLLSDFWPHGEVAKAYGVFDEDL----GVA-ERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEA 146 (149)
T ss_pred HHHHHHHHhcCC--CceEecCCCchhHHHHHhCCccccC----CCc-cceEEEECCCCEEEEEEecCCcccccchhHHHH
Confidence 999999999998 999999988 99999999974311 233 34689999 999999999873 23356677776
Q ss_pred Hh
Q 038822 159 LK 160 (162)
Q Consensus 159 l~ 160 (162)
|+
T Consensus 147 ~~ 148 (149)
T cd03018 147 LD 148 (149)
T ss_pred hh
Confidence 65
No 15
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=9.1e-30 Score=186.65 Aligned_cols=141 Identities=24% Similarity=0.373 Sum_probs=118.2
Q ss_pred CCCCCCCeeeeeeecCCCceeEehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH
Q 038822 6 VGDPLPDGTLVYFDEQDQLQQVSVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV 84 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~ 84 (162)
+|+++|+|+++ +.+| .++|+++ +| +++||+|||++|||+|..| ++.|++++++|+++|+ +|++||.|+.+.
T Consensus 1 vG~~aP~F~~~----~~~g-~~~l~d~-~g~k~vvlf~~pa~~cp~C~~e-l~~l~~~~~~f~~~gv-~vigvS~D~~~~ 72 (203)
T cd03016 1 LGDTAPNFEAD----TTHG-PIKFHDY-LGDSWGILFSHPADFTPVCTTE-LGAFAKLAPEFKKRNV-KLIGLSVDSVES 72 (203)
T ss_pred CcCCCCCeEEe----cCCC-cEeHHHH-cCCCEEEEEEecCCCCCcCHHH-HHHHHHHHHHHHHcCC-EEEEEECCCHHH
Confidence 59999999999 6666 5999998 67 7899999999999999998 9999999999999999 999999999999
Q ss_pred HHHHHHh------CCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHH
Q 038822 85 MKAWAKT------FPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADD 157 (162)
Q Consensus 85 ~~~~~~~------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~ 157 (162)
+++|.+. .++ +||+++|+++++++.||+.... .+.+. +.|.+|||| +|+|+++++++.. ..+++++
T Consensus 73 ~~~~~~~i~~~~~~~~--~fpil~D~~~~ia~~yg~~~~~--~~~~~-~~r~~fiID~~G~I~~~~~~~~~--~gr~~~e 145 (203)
T cd03016 73 HIKWIEDIEEYTGVEI--PFPIIADPDREVAKLLGMIDPD--AGSTL-TVRAVFIIDPDKKIRLILYYPAT--TGRNFDE 145 (203)
T ss_pred HHHHHhhHHHhcCCCC--ceeEEECchHHHHHHcCCcccc--CCCCc-eeeEEEEECCCCeEEEEEecCCC--CCCCHHH
Confidence 9988876 566 9999999999999999997431 11122 357799999 9999999987632 1356677
Q ss_pred HHhc
Q 038822 158 ILKS 161 (162)
Q Consensus 158 il~~ 161 (162)
+++.
T Consensus 146 ll~~ 149 (203)
T cd03016 146 ILRV 149 (203)
T ss_pred HHHH
Confidence 6654
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.97 E-value=1.2e-29 Score=181.81 Aligned_cols=140 Identities=26% Similarity=0.370 Sum_probs=117.6
Q ss_pred CCCCCCCeeeeeeecCCCc----eeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 6 VGDPLPDGTLVYFDEQDQL----QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~g----~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
+|+++|+|+++ +.+| +.++|+++ +||++||+||+++|||.|..+ ++.|++++++|++.|+ +|++||.|+
T Consensus 1 vG~~aP~f~~~----~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~-l~~l~~~~~~~~~~~v-~vv~Is~d~ 73 (173)
T cd03015 1 VGKKAPDFKAT----AVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTE-IIAFSDRYEEFKKLNA-EVLGVSTDS 73 (173)
T ss_pred CCCcCCCCEee----cccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHCCC-EEEEEecCC
Confidence 69999999999 5555 79999998 899999999999999999998 9999999999999999 999999999
Q ss_pred HHHHHHHHHhC-------CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeC
Q 038822 82 PFVMKAWAKTF-------PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVS 153 (162)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~ 153 (162)
.+..++|.+.+ ++ +|++++|+++++++.||+..... +.. .|.+||+| +|+|++.+++.... .+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~--~f~~l~D~~~~~~~~~gv~~~~~--~~~---~p~~~lID~~G~I~~~~~~~~~~--~~ 144 (173)
T cd03015 74 HFSHLAWRNTPRKEGGLGKI--NFPLLADPKKKISRDYGVLDEEE--GVA---LRGTFIIDPEGIIRHITVNDLPV--GR 144 (173)
T ss_pred HHHHHHHHHhhhhhCCccCc--ceeEEECCchhHHHHhCCccccC--Cce---eeEEEEECCCCeEEEEEecCCCC--CC
Confidence 88888888774 45 89999999999999999975421 222 35699999 99999999876221 24
Q ss_pred CHHHHHhc
Q 038822 154 SADDILKS 161 (162)
Q Consensus 154 ~~~~il~~ 161 (162)
..+++++.
T Consensus 145 ~~~~il~~ 152 (173)
T cd03015 145 SVDETLRV 152 (173)
T ss_pred CHHHHHHH
Confidence 56666654
No 17
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.97 E-value=1.4e-29 Score=185.25 Aligned_cols=150 Identities=20% Similarity=0.340 Sum_probs=123.2
Q ss_pred CCCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 1 MAPIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 1 m~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|..+.+|+++|+|+++.+..+.+|++++|+++ +||++||+||+++|||+|..+ ++.|++++++|+++|+ +|++||.|
T Consensus 3 ~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e-~~~l~~~~~~f~~~g~-~vv~IS~d 79 (199)
T PTZ00253 3 CGDAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTE-IIQFSDSVKRFNELNC-EVLACSMD 79 (199)
T ss_pred ccccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHH-HHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 34578999999999873211467789999998 899999999999999999998 9999999999999999 99999999
Q ss_pred CHHHHHHHHHhC-------CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCccee
Q 038822 81 DPFVMKAWAKTF-------PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTV 152 (162)
Q Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~ 152 (162)
+.+.+.+|.... ++ +||+++|+++++++.||+.... . +. ..|.+||+| +|+|++.++++.. ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~fpll~D~~~~ia~~ygv~~~~--~--g~-~~r~~fiID~~G~i~~~~~~~~~--~~ 150 (199)
T PTZ00253 80 SEYAHLQWTLQERKKGGLGTM--AIPMLADKTKSIARSYGVLEEE--Q--GV-AYRGLFIIDPKGMLRQITVNDMP--VG 150 (199)
T ss_pred CHHHHHHHHhChHhhCCcccc--ccceEECcHhHHHHHcCCcccC--C--Cc-eEEEEEEECCCCEEEEEEecCCC--CC
Confidence 998888875421 24 8999999999999999997431 1 22 236799999 9999999988633 24
Q ss_pred CCHHHHHhcC
Q 038822 153 SSADDILKSL 162 (162)
Q Consensus 153 ~~~~~il~~l 162 (162)
++++++|+.|
T Consensus 151 r~~~e~l~~l 160 (199)
T PTZ00253 151 RNVEEVLRLL 160 (199)
T ss_pred CCHHHHHHHH
Confidence 7788887653
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.97 E-value=3e-29 Score=174.28 Aligned_cols=140 Identities=28% Similarity=0.368 Sum_probs=120.4
Q ss_pred CCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH
Q 038822 5 AVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV 84 (162)
Q Consensus 5 ~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~ 84 (162)
++|+++|+|+++ +.+|+.++|+++ +||++||+||++.|||.|+.+ ++.|+++++++ .|+ .|++||.|+++.
T Consensus 1 ~~G~~aP~f~l~----~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~--~~~-~vi~Is~d~~~~ 71 (143)
T cd03014 1 KVGDKAPDFTLV----TSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQ-TKRFNKEAAKL--DNT-VVLTISADLPFA 71 (143)
T ss_pred CCCCCCCCcEEE----CCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHH-HHHHHHHHHhc--CCC-EEEEEECCCHHH
Confidence 479999999999 899999999997 899999999988889999998 99999999998 388 999999999999
Q ss_pred HHHHHHhCCCCCceEEEEcCC-chHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 85 MKAWAKTFPKNKSVKFLADGS-AKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D~~-~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
+++|.++++. .++++++|+. +++++.||+..+. . +. ..|.+||+| +|+|++.+++.... +.++++++|+
T Consensus 72 ~~~~~~~~~~-~~~~~l~D~~~~~~~~~~gv~~~~--~--~~-~~~~~~iid~~G~I~~~~~~~~~~-~~~~~~~~~~ 142 (143)
T cd03014 72 QKRWCGAEGV-DNVTTLSDFRDHSFGKAYGVLIKD--L--GL-LARAVFVIDENGKVIYVELVPEIT-DEPDYEAALA 142 (143)
T ss_pred HHHHHHhcCC-CCceEeecCcccHHHHHhCCeecc--C--Cc-cceEEEEEcCCCeEEEEEECCCcc-cCCCHHHHhh
Confidence 9999999984 3799999997 9999999997532 1 22 235699999 99999999976332 4588888875
No 19
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.97 E-value=2.7e-29 Score=173.59 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=121.0
Q ss_pred CCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHH
Q 038822 8 DPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKA 87 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 87 (162)
+++|+|+++ +.+|+.++++++ +||++||+||+++|||.|..+ ++.|++++++++++++ ++++|+.|+++.+++
T Consensus 1 ~~~p~f~l~----~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~-~vv~is~d~~~~~~~ 73 (140)
T cd03017 1 DKAPDFTLP----DQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKE-ACDFRDLYEEFKALGA-VVIGVSPDSVESHAK 73 (140)
T ss_pred CCCCCcccc----CCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHH-HHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence 479999999 899999999998 899999999999999999997 9999999999999999 999999999999999
Q ss_pred HHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 88 WAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 88 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
|.++++. +|++++|+++++++.||+...... +.+. ..|.+||+| +|+|++.+.+... .++++++|+
T Consensus 74 ~~~~~~~--~~~~l~D~~~~~~~~~gv~~~~~~-~~~~-~~p~~~lid~~G~v~~~~~g~~~---~~~~~~~~~ 140 (140)
T cd03017 74 FAEKYGL--PFPLLSDPDGKLAKAYGVWGEKKK-KYMG-IERSTFLIDPDGKIVKVWRKVKP---KGHAEEVLE 140 (140)
T ss_pred HHHHhCC--CceEEECCccHHHHHhCCcccccc-ccCC-cceeEEEECCCCEEEEEEecCCc---cchHHHHhC
Confidence 9999998 999999999999999998853211 1111 235699999 9999999986643 388888874
No 20
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.97 E-value=9.1e-30 Score=172.41 Aligned_cols=123 Identities=32% Similarity=0.497 Sum_probs=112.7
Q ss_pred CCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHH
Q 038822 6 VGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVM 85 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 85 (162)
+|+++|+|+++ +.+|+.++|+++ +||++||+||+++|||.|..+ ++.|++++++++++++ ++++|+.|+++.+
T Consensus 1 vG~~~P~f~l~----~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~-l~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 73 (124)
T PF00578_consen 1 VGDKAPDFTLT----DSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAE-LPELNELYKKYKDKGV-QVIGISTDDPEEI 73 (124)
T ss_dssp TTSBGGCEEEE----TTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTE-EEEEEESSSHHHH
T ss_pred CcCCCCCcEeE----CCCCCEEEHHHH-CCCcEEEEEeCccCccccccc-hhHHHHHhhhhccceE-Eeeecccccccch
Confidence 79999999999 899999999998 999999999988899999997 9999999999999999 9999999999999
Q ss_pred HHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEE
Q 038822 86 KAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAA 142 (162)
Q Consensus 86 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~ 142 (162)
++|.+++++ +|++++|+++.+++.|++.... .....|.+||+| +|+|+|+
T Consensus 74 ~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~-----~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 74 KQFLEEYGL--PFPVLSDPDGELAKAFGIEDEK-----DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHTC--SSEEEEETTSHHHHHTTCEETT-----TSEESEEEEEEETTSBEEEE
T ss_pred hhhhhhhcc--ccccccCcchHHHHHcCCcccc-----CCceEeEEEEECCCCEEEeC
Confidence 999999998 9999999999999999998432 122446799999 9999985
No 21
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.97 E-value=1.8e-29 Score=175.88 Aligned_cols=144 Identities=26% Similarity=0.395 Sum_probs=118.9
Q ss_pred CCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH
Q 038822 5 AVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV 84 (162)
Q Consensus 5 ~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~ 84 (162)
++|+++|+|+++.. +.+|++++|+++ +||++||+||++.|||+|+.+ +|.+++++++++++++ .+++|+.++...
T Consensus 1 k~G~~~P~~~~~~~--~~~g~~~~l~~~-~gk~~vv~f~~~~~Cp~C~~~-~p~l~~l~~~~~~~~v-~~v~v~~~~~~~ 75 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL--DLDGKPVSLSDF-KGKPVVVNFWASAWCPPCRKE-LPYLNELQEKYKDKGV-DVVGVSSDDDPP 75 (146)
T ss_dssp STTSB--CCEEEEE--ETTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTC-EEEEEEESSSHH
T ss_pred CCCCCCCCeEEEee--cCCCCEecHHHh-CCCeEEEEEEccCCCCcchhh-hhhHHhhhhhhccCce-EEEEecccCCHH
Confidence 68999999999711 489999999996 999999999955599999998 9999999999999999 999999887666
Q ss_pred HHHHHHhCCCCCceEEEEcCCchHHHHcCCcccccc-CCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHH
Q 038822 85 MKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSE-KGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDIL 159 (162)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~-~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il 159 (162)
..+|+++++. +|+++.|+++.++++|++.+.... .+.++| .++|+| +|+|+|.+.+...+ +.++++++|
T Consensus 76 ~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P---~~~lId~~G~V~~~~~g~~~~-~~~~~~~~l 146 (146)
T PF08534_consen 76 VREFLKKYGI--NFPVLSDPDGALAKALGVTIMEDPGNGFGIP---TTFLIDKDGKVVYRHVGPDPD-EESDLEAVL 146 (146)
T ss_dssp HHHHHHHTTT--TSEEEEETTSHHHHHTTCEEECCTTTTSSSS---EEEEEETTSBEEEEEESSBTT-SHHSHHHHH
T ss_pred HHHHHHhhCC--CceEEechHHHHHHHhCCccccccccCCeec---EEEEEECCCEEEEEEeCCCCC-CCCChhhcC
Confidence 9999999988 999999999999999998743211 112344 488888 99999999987443 467888876
No 22
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.96 E-value=5.5e-28 Score=166.97 Aligned_cols=137 Identities=34% Similarity=0.544 Sum_probs=117.7
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHH
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAW 88 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 88 (162)
++|+|++. +.+|++++++++ +||++||+||+++|||.|..+ ++.|+++++++++.++ ++++|+.|+++.+++|
T Consensus 1 ~~p~f~l~----~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~~-~~i~is~d~~~~~~~~ 73 (140)
T cd02971 1 KAPDFTLP----ATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGA-EVLGVSVDSPFSHKAW 73 (140)
T ss_pred CCCCceec----cCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHH
Confidence 47999999 899999999998 899999999999999999998 9999999999988899 9999999999999999
Q ss_pred HHhC-CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHH
Q 038822 89 AKTF-PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDI 158 (162)
Q Consensus 89 ~~~~-~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~i 158 (162)
.+++ +. +|++++|+++.+++.||+...... + +....|++||+| +|+|++++.+... +.+..+.+
T Consensus 74 ~~~~~~~--~~~~l~D~~~~~~~~~g~~~~~~~-~-~~~~~p~~~lid~~g~i~~~~~~~~~--~~~~~~~~ 139 (140)
T cd02971 74 AEKEGGL--NFPLLSDPDGEFAKAYGVLIEKSA-G-GGLAARATFIIDPDGKIRYVEVEPLP--TGRNAEEL 139 (140)
T ss_pred HhcccCC--CceEEECCChHHHHHcCCcccccc-c-cCceeEEEEEECCCCcEEEEEecCCC--CCcChHhh
Confidence 9999 77 999999999999999999854321 1 112356799999 9999999998743 23454443
No 23
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=1.7e-27 Score=165.87 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=110.5
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHH
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAW 88 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 88 (162)
.+|+|+++ +.+|+.++++++.+++++||+||+++|||+|+.+ ++.|+++++++++.++ ++++|+.++.+...+|
T Consensus 1 ~~p~f~l~----~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~-~~~l~~~~~~~~~~~v-~vv~V~~~~~~~~~~~ 74 (149)
T cd02970 1 TAPDFELP----DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREY-LRALSKLLPELDALGV-ELVAVGPESPEKLEAF 74 (149)
T ss_pred CCCCcccc----CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHH-HHHHHHHHHHHHhcCe-EEEEEeCCCHHHHHHH
Confidence 48999999 8999999999975568899999999999999997 9999999999999999 9999999999999999
Q ss_pred HHhCCCCCceEEEEcCCchHHHHcCCccccc-------------------cCCCCccceeEEEEEc-CCeEEEEEee
Q 038822 89 AKTFPKNKSVKFLADGSAKYTHALGLELDLS-------------------EKGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 89 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~-------------------~~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
.+++++ +||+++|+++++++.||+..... ..+.+. ..|.+||+| +|+|+|.+++
T Consensus 75 ~~~~~~--~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 75 DKGKFL--PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGL-QLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHhcCC--CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCccc-ccceEEEECCCCeEEEEecC
Confidence 999998 99999999999999999963211 001111 345699999 9999999975
No 24
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-25 Score=150.92 Aligned_cols=159 Identities=47% Similarity=0.812 Sum_probs=143.5
Q ss_pred CCCCCCCCCeeeeee--ecCCC-ceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 4 IAVGDPLPDGTLVYF--DEQDQ-LQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 4 l~~G~~~P~f~l~~~--~~~~~-g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+.+|+++|..++..- +.+.. -..++-.++++||++||+-.||.++|.|...|+|.+.+++++|+++|+++|+.||++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 789999999999721 11112 257788888899999999999999999999889999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeec-CCcceeCCHHHHH
Q 038822 81 DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-GGDFTVSSADDIL 159 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~-~~~~~~~~~~~il 159 (162)
++....+|.+..+...++.+++|.++++.+..|+..+.++.++|.++.|+..|++||.|.+.++.+ +.+++++.++.+|
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~~~vS~a~~mL 162 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSSADTML 162 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCceeecCHHHHH
Confidence 999999999999975589999999999999999999988889999999999999999999999997 5558899999999
Q ss_pred hcC
Q 038822 160 KSL 162 (162)
Q Consensus 160 ~~l 162 (162)
++|
T Consensus 163 ~~L 165 (165)
T COG0678 163 AQL 165 (165)
T ss_pred hcC
Confidence 986
No 25
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.94 E-value=5.6e-26 Score=164.13 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=102.4
Q ss_pred CCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC-----
Q 038822 6 VGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN----- 80 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d----- 80 (162)
.+..+|+|+++ +.+|++++|+++ +||++||++++++|||+|..| +|.|++++++++++|+ .|++|+.+
T Consensus 16 ~~~~~p~f~l~----d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e-~p~l~~l~~~~~~~gv-~vv~vs~~~~~~~ 88 (183)
T PTZ00256 16 PTKSFFEFEAI----DIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDH-YTQLVELYKQYKSQGL-EILAFPCNQFMEQ 88 (183)
T ss_pred CCCcccceEeE----cCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHH-HHHHHHHHHHHhhCCc-EEEEEeccccccc
Confidence 46789999999 899999999998 899776655469999999998 9999999999999999 99999864
Q ss_pred ---CHHHHHHHHH-hCCCCCceEEEEc--CCchH-HHHcCCcccccc-------CCCCccceeEEEEEc-CCeEEEEEee
Q 038822 81 ---DPFVMKAWAK-TFPKNKSVKFLAD--GSAKY-THALGLELDLSE-------KGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 81 ---~~~~~~~~~~-~~~~~~~~~~l~D--~~~~~-~~~~gv~~~~~~-------~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
+.+...+|++ ++++ +||+++| .++.. .+.|+...+... ...++|..+.+||+| +|+|++.+.+
T Consensus 89 ~~~~~~~~~~f~~~~~~~--~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g 166 (183)
T PTZ00256 89 EPWDEPEIKEYVQKKFNV--DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSP 166 (183)
T ss_pred CCCCHHHHHHHHHHhcCC--CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECC
Confidence 3577888875 7888 9999966 55433 344422111000 011456556689999 9999999987
Q ss_pred cCC
Q 038822 146 SGG 148 (162)
Q Consensus 146 ~~~ 148 (162)
...
T Consensus 167 ~~~ 169 (183)
T PTZ00256 167 KVN 169 (183)
T ss_pred CCC
Confidence 643
No 26
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.94 E-value=1.5e-25 Score=163.67 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=103.5
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV---- 79 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~---- 79 (162)
-..|..+|+|+++ +.+|+.++|+++ +||++||+|| ++|||+|+.+ +|.|++++++++++|+ +|++|+.
T Consensus 13 ~~~~~~~pdf~l~----d~~G~~vsL~~~-kGkvvlv~fw-AswC~~C~~e-~p~L~~l~~~~~~~g~-~vvgv~~~~~~ 84 (199)
T PTZ00056 13 DELRKSIYDYTVK----TLEGTTVPMSSL-KNKVLMITNS-ASKCGLTKKH-VDQMNRLHSVFNPLGL-EILAFPTSQFL 84 (199)
T ss_pred hhcCCCCCceEEE----CCCCCEEeHHHh-CCCEEEEEEE-CCCCCChHHH-HHHHHHHHHHHhcCce-EEEEecchhcc
Confidence 4678899999999 899999999998 8998777776 8999999998 9999999999999999 9999985
Q ss_pred ----CCHHHHHHHHHhCCCCCceEEEEcC------CchHHHH--------cCCccccccCCCCccceeEEEEEc-CCeEE
Q 038822 80 ----NDPFVMKAWAKTFPKNKSVKFLADG------SAKYTHA--------LGLELDLSEKGLGTQSRRFALLVD-DLKVK 140 (162)
Q Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~--------~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~ 140 (162)
++++.+++|.+++++ +||+++|. ...+.+. |+.. ....+++..+.+||+| +|+|+
T Consensus 85 ~~e~d~~e~~~~f~~~~~~--~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~----~~~~~i~~~~~tflID~~G~iv 158 (199)
T PTZ00056 85 NQEFPNTKDIRKFNDKNKI--KYNFFEPIEVNGENTHELFKFLKANCDSMHDEN----GTLKAIGWNFGKFLVNKSGNVV 158 (199)
T ss_pred CCCCCCHHHHHHHHHHcCC--CceeeeeeeccCCccCHHHHHHHHhCccccccc----ccCCccCCCCEEEEECCCCcEE
Confidence 578899999999999 99999873 2223322 3221 1111233334589999 99999
Q ss_pred EEEeecC
Q 038822 141 AANVESG 147 (162)
Q Consensus 141 ~~~~~~~ 147 (162)
+.+.+..
T Consensus 159 ~~~~g~~ 165 (199)
T PTZ00056 159 AYFSPRT 165 (199)
T ss_pred EEeCCCC
Confidence 9887653
No 27
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=1.3e-25 Score=160.02 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=103.4
Q ss_pred CCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC------
Q 038822 7 GDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN------ 80 (162)
Q Consensus 7 G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d------ 80 (162)
-+.+|+|+++ +.+|+.++|+++ +||++||+|| ++|||.|+.+ ++.|++++++++++|+ +|++|+.+
T Consensus 6 ~~~~pdf~l~----d~~G~~v~l~~~-~gk~vlv~f~-a~~C~~c~~e-~~~l~~l~~~~~~~g~-~vvgv~~~~~~~~~ 77 (167)
T PLN02412 6 PKSIYDFTVK----DIGGNDVSLNQY-KGKVLLIVNV-ASKCGLTDSN-YKELNVLYEKYKEQGF-EILAFPCNQFLGQE 77 (167)
T ss_pred CCCCCceEEE----CCCCCEEeHHHh-CCCEEEEEEe-CCCCCChHHH-HHHHHHHHHHHhhCCc-EEEEecccccccCC
Confidence 3789999999 899999999998 8998888888 9999999998 9999999999999999 99999863
Q ss_pred --CHHHHHH-HHHhCCCCCceEEEEc--CCc-hHHHHcCCcccccc--CCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 81 --DPFVMKA-WAKTFPKNKSVKFLAD--GSA-KYTHALGLELDLSE--KGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 81 --~~~~~~~-~~~~~~~~~~~~~l~D--~~~-~~~~~~gv~~~~~~--~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
+.+...+ |.+++++ +||+++| +++ ...+.|+....... .+.+....|++||+| +|+|++.+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~--~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~ 152 (167)
T PLN02412 78 PGSNEEIQQTVCTRFKA--EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTS 152 (167)
T ss_pred CCCHHHHHHHHHHccCC--CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCC
Confidence 4555544 5689998 9999984 564 67777764321100 011122235699999 9999999987643
No 28
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.93 E-value=6.1e-26 Score=159.39 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=100.3
Q ss_pred CCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--------CC
Q 038822 10 LPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV--------ND 81 (162)
Q Consensus 10 ~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~--------d~ 81 (162)
+|+|+++ +.+|++++|+++ +||++||+|| ++||| |+.+ +|.|++++++++++++ +|++|+. ++
T Consensus 2 ~~~f~l~----d~~G~~v~l~~~-~Gk~vvl~fw-atwC~-C~~e-~p~l~~l~~~~~~~~~-~vv~v~~~~~~~~~~~~ 72 (152)
T cd00340 2 IYDFSVK----DIDGEPVSLSKY-KGKVLLIVNV-ASKCG-FTPQ-YEGLEALYEKYKDRGL-VVLGFPCNQFGGQEPGS 72 (152)
T ss_pred cceeEEE----CCCCCEEeHHHh-CCCEEEEEEE-cCCCC-chHH-HHHHHHHHHHhcCCCE-EEEEeccCccccCCCCC
Confidence 7999999 999999999998 8999888888 99999 9998 9999999999998899 9999986 44
Q ss_pred HHHHHHHHHh-CCCCCceEEEEcC--Cch-HHHHcCCccccccC--CCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 82 PFVMKAWAKT-FPKNKSVKFLADG--SAK-YTHALGLELDLSEK--GLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~l~D~--~~~-~~~~~gv~~~~~~~--~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
++.+++|+++ +++ +||+++|. ++. ..+.|+.....-.. +......+++||+| +|+|++.+.+...
T Consensus 73 ~~~~~~f~~~~~~~--~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 73 NEEIKEFCETNYGV--TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHHHHHHHHhcCC--CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 7889999997 788 99999875 333 45666642110000 00111124689999 9999999987643
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.93 E-value=2.3e-25 Score=165.74 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=111.2
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV---- 79 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~---- 79 (162)
...|+.+|+|+++ +.+|+.++|+++ +||++||+|| ++|||.|..+ ++.|++++++++++|+ +|++|+.
T Consensus 73 ~~~g~~aPdF~l~----d~~G~~vsLsd~-kGK~vvl~Fw-AswCp~c~~e-~p~L~~L~~~~~~~Gv-~VIgV~~d~~~ 144 (236)
T PLN02399 73 AATEKSVHDFTVK----DIDGKDVALSKF-KGKVLLIVNV-ASKCGLTSSN-YSELSHLYEKYKTQGF-EILAFPCNQFG 144 (236)
T ss_pred hhcCCCCCceEEE----CCCCCEEeHHHh-CCCeEEEEEE-cCCCcchHHH-HHHHHHHHHHHhcCCc-EEEEEeccccc
Confidence 3579999999999 999999999998 8999999999 9999999998 9999999999999999 9999996
Q ss_pred ----CCHHHHHHHH-HhCCCCCceEEEEc--CCc-hHHHHcCCccccccC--CCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 80 ----NDPFVMKAWA-KTFPKNKSVKFLAD--GSA-KYTHALGLELDLSEK--GLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 80 ----d~~~~~~~~~-~~~~~~~~~~~l~D--~~~-~~~~~~gv~~~~~~~--~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
++.++.++|. +++++ +||++.| .++ .....|+........ +......|.+|||| +|+|++.+.+...
T Consensus 145 ~~e~~s~~ei~~f~~~~~g~--~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~ 222 (236)
T PLN02399 145 GQEPGSNPEIKQFACTRFKA--EFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTS 222 (236)
T ss_pred ccCCCCHHHHHHHHHHhcCC--CCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCC
Confidence 4567888997 68888 9999964 444 455666532110000 10122235699999 9999999987643
Q ss_pred cceeCCHHHHHhc
Q 038822 149 DFTVSSADDILKS 161 (162)
Q Consensus 149 ~~~~~~~~~il~~ 161 (162)
+ +++++.+++
T Consensus 223 ~---~~le~~I~~ 232 (236)
T PLN02399 223 P---FQIEKDIQK 232 (236)
T ss_pred H---HHHHHHHHH
Confidence 3 455555543
No 30
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=1.9e-25 Score=161.67 Aligned_cols=130 Identities=20% Similarity=0.301 Sum_probs=107.1
Q ss_pred CCCCCCCCCeeeeeeecCCC--ceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc-C
Q 038822 4 IAVGDPLPDGTLVYFDEQDQ--LQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV-N 80 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~--g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~-d 80 (162)
..+|+++|+|+++ +.+ |+.++++++.+||++||+|| ++|||+|+.+ +|.++++. ++++ +|++|+. +
T Consensus 39 ~~~g~~~p~f~l~----~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e-~p~l~~l~----~~~~-~vi~v~~~~ 107 (185)
T PRK15412 39 ALIGKPVPKFRLE----SLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAE-HQYLNQLS----AQGI-RVVGMNYKD 107 (185)
T ss_pred hhcCCCCCCcCCc----cCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHH-HHHHHHHH----HcCC-EEEEEECCC
Confidence 5679999999999 666 57777777547999999999 8999999998 99998764 3588 9999997 5
Q ss_pred CHHHHHHHHHhCCCCCceE-EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHH
Q 038822 81 DPFVMKAWAKTFPKNKSVK-FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDI 158 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~i 158 (162)
+++..++|.++++. +|+ ++.|+++.+++.||+. +.|+ +|++| +|+|++.+.+...+ +++++.
T Consensus 108 ~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~--------~~P~---t~vid~~G~i~~~~~G~~~~---~~l~~~ 171 (185)
T PRK15412 108 DRQKAISWLKELGN--PYALSLFDGDGMLGLDLGVY--------GAPE---TFLIDGNGIIRYRHAGDLNP---RVWESE 171 (185)
T ss_pred CHHHHHHHHHHcCC--CCceEEEcCCccHHHhcCCC--------cCCe---EEEECCCceEEEEEecCCCH---HHHHHH
Confidence 67889999999998 888 4889999999999987 5554 99999 99999999987543 445554
Q ss_pred Hh
Q 038822 159 LK 160 (162)
Q Consensus 159 l~ 160 (162)
++
T Consensus 172 i~ 173 (185)
T PRK15412 172 IK 173 (185)
T ss_pred HH
Confidence 44
No 31
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=147.89 Aligned_cols=162 Identities=69% Similarity=1.069 Sum_probs=141.5
Q ss_pred CCCCCCCCCCCCeeeeee-ecCC--CceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEE
Q 038822 1 MAPIAVGDPLPDGTLVYF-DEQD--QLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCI 77 (162)
Q Consensus 1 m~~l~~G~~~P~f~l~~~-~~~~--~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~i 77 (162)
|+++.+|+..|+-++..+ +... .+.++.++++.+||++||+-.|+.++|.|...|+|.+.+..++++++|+++|+.+
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 789999999999333211 1011 2238999999999999999999999999988899999999999999999899999
Q ss_pred EcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeec-CCcceeCCHH
Q 038822 78 SVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES-GGDFTVSSAD 156 (162)
Q Consensus 78 s~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~-~~~~~~~~~~ 156 (162)
|.|++...++|.+.++......+++|+++++.+.+|+..+..+.+.+.++.|+.++++||+|.++...+ +..++.+.++
T Consensus 86 SVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa~ 165 (171)
T KOG0541|consen 86 SVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTVSSAE 165 (171)
T ss_pred ecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEEecHH
Confidence 999999999999999876679999999999999999998877777788899999999999999999997 4448899999
Q ss_pred HHHhcC
Q 038822 157 DILKSL 162 (162)
Q Consensus 157 ~il~~l 162 (162)
.||.+|
T Consensus 166 ~il~~l 171 (171)
T KOG0541|consen 166 DILKQL 171 (171)
T ss_pred HHhhcC
Confidence 999876
No 32
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=6.3e-25 Score=149.58 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=96.7
Q ss_pred CceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc------CCHHHHHHHHHhCCCCC
Q 038822 23 QLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV------NDPFVMKAWAKTFPKNK 96 (162)
Q Consensus 23 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~------d~~~~~~~~~~~~~~~~ 96 (162)
.|++++|+++ +||++||+|| ++|||.|.++ ++.|+++++++++.++ .+++|+. ++++.+++|.+++++
T Consensus 12 ~~~~v~l~~~-~gk~vvl~F~-a~~C~~C~~~-~p~l~~l~~~~~~~~~-~vi~i~~~~~~~~~~~~~~~~~~~~~~~-- 85 (126)
T cd03012 12 TDKPLSLAQL-RGKVVLLDFW-TYCCINCLHT-LPYLTDLEQKYKDDGL-VVIGVHSPEFAFERDLANVKSAVLRYGI-- 85 (126)
T ss_pred CCCccCHHHh-CCCEEEEEEE-CCCCccHHHH-HHHHHHHHHHcCcCCe-EEEEeccCccccccCHHHHHHHHHHcCC--
Confidence 4678999998 9999989888 8999999998 9999999999998899 9999976 468899999999999
Q ss_pred ceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeec
Q 038822 97 SVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVES 146 (162)
Q Consensus 97 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~ 146 (162)
+||+++|+++.+++.|++. ++| .+||+| +|+|++.+.++
T Consensus 86 ~~p~~~D~~~~~~~~~~v~--------~~P---~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 86 TYPVANDNDYATWRAYGNQ--------YWP---ALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCEEECCchHHHHHhCCC--------cCC---eEEEECCCCcEEEEEecC
Confidence 9999999999999999986 455 499999 99999999875
No 33
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=2.3e-24 Score=153.99 Aligned_cols=119 Identities=27% Similarity=0.302 Sum_probs=106.3
Q ss_pred CCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC------
Q 038822 7 GDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN------ 80 (162)
Q Consensus 7 G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d------ 80 (162)
|+++|+|+++ +.+|++++|+++.+++++||+|| ++|||.|..+ ++.|.+++++++++++ .+++|+.|
T Consensus 1 g~~~p~f~l~----~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~-~~~l~~l~~~~~~~~v-~~v~is~d~~~~~~ 73 (171)
T cd02969 1 GSPAPDFSLP----DTDGKTYSLADFADGKALVVMFI-CNHCPYVKAI-EDRLNRLAKEYGAKGV-AVVAINSNDIEAYP 73 (171)
T ss_pred CCcCCCcccc----CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHH-HHHHHHHHHHHhhCCe-EEEEEecCcccccc
Confidence 7899999999 88999999999647788888888 8999999998 9999999999998899 99999985
Q ss_pred --CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEee
Q 038822 81 --DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
+++..++|.+++++ +|+++.|+++.+++.||+. ..| .+||+| +|+|+|....
T Consensus 74 ~d~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~~~v~--------~~P---~~~lid~~G~v~~~~~~ 128 (171)
T cd02969 74 EDSPENMKAKAKEHGY--PFPYLLDETQEVAKAYGAA--------CTP---DFFLFDPDGKLVYRGRI 128 (171)
T ss_pred ccCHHHHHHHHHHCCC--CceEEECCchHHHHHcCCC--------cCC---cEEEECCCCeEEEeecc
Confidence 47889999999998 8999999999999999996 344 489999 9999988653
No 34
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6e-24 Score=147.70 Aligned_cols=149 Identities=23% Similarity=0.338 Sum_probs=126.1
Q ss_pred CCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
.++.+..++|+|+-+++. |...+.++|++| +||++|++|++.+++-+|+.| +-.+++.+++|++.|+ +|+++|.|+
T Consensus 2 ~~~~~~~p~p~fk~~aVV-dG~f~e~~L~dy-~gkyvvlfFyplDftfVcPte-IiafSd~~~eF~~~n~-eVig~S~DS 77 (196)
T KOG0852|consen 2 MMEVVFKPAPDFKGTAVV-DGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTE-IIAFSDRAPEFRKLNT-EVLGISTDS 77 (196)
T ss_pred CccccCCCCCCcceeEEE-cCcceEEeehhh-cccEEEEEecCCceeeECchh-hhhhhhhHHHHHhcCC-eEEEEeccc
Confidence 456788889999998776 778899999998 899999999999999999997 9999999999999999 999999999
Q ss_pred HHHHHHHHH----hCCCC-CceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCH
Q 038822 82 PFVMKAWAK----TFPKN-KSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSA 155 (162)
Q Consensus 82 ~~~~~~~~~----~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~ 155 (162)
.+.+.+|.. +.|+. .++|+++|.+.+++++||++.+ +.|.. .|..||+| +|.+|.+.+++-+ ..+.+
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~--~~G~~---lRglfIId~~gi~R~it~NDlp--vgRSV 150 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKE--DEGIA---LRGLFIIDPDGILRQITINDLP--VGRSV 150 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceec--CCCcc---eeeeEEEccccceEEeeecccC--CCccH
Confidence 999999984 33442 2699999999999999999965 23333 35588888 9999999998733 24777
Q ss_pred HHHHhc
Q 038822 156 DDILKS 161 (162)
Q Consensus 156 ~~il~~ 161 (162)
+|.|+.
T Consensus 151 dE~lRL 156 (196)
T KOG0852|consen 151 DETLRL 156 (196)
T ss_pred HHHHHH
Confidence 777763
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=3.2e-24 Score=153.15 Aligned_cols=135 Identities=21% Similarity=0.334 Sum_probs=118.2
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC-C
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN-D 81 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d-~ 81 (162)
.+.+|+++|+|++. +.+|+.++++++ +|++++|+|| ++|||.|+.+ ++.++++++++++.++ ++++|+.| +
T Consensus 34 ~~~~g~~~p~~~~~----~~~g~~~~l~~~-~~k~~~l~f~-a~~C~~C~~~-~~~l~~~~~~~~~~~~-~vi~i~~d~~ 105 (173)
T PRK03147 34 KVQVGKEAPNFVLT----DLEGKKIELKDL-KGKGVFLNFW-GTWCKPCEKE-MPYMNELYPKYKEKGV-EIIAVNVDET 105 (173)
T ss_pred ccCCCCCCCCcEee----cCCCCEEeHHHc-CCCEEEEEEE-CCcCHHHHHH-HHHHHHHHHHhhcCCe-EEEEEEcCCC
Confidence 47899999999999 889999999997 8999999998 8999999997 9999999999998888 99999986 5
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 82 PFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
.+..++|.++++. +|+++.|.++.+.+.||+. +.| .+|++| +|+|++.+.+.... +++++.|+
T Consensus 106 ~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~--------~~P---~~~lid~~g~i~~~~~g~~~~---~~l~~~l~ 169 (173)
T PRK03147 106 ELAVKNFVNRYGL--TFPVAIDKGRQVIDAYGVG--------PLP---TTFLIDKDGKVVKVITGEMTE---EQLEEYLE 169 (173)
T ss_pred HHHHHHHHHHhCC--CceEEECCcchHHHHcCCC--------CcC---eEEEECCCCcEEEEEeCCCCH---HHHHHHHH
Confidence 5788999999998 9999999999999999986 444 489998 99999998766443 56666665
Q ss_pred c
Q 038822 161 S 161 (162)
Q Consensus 161 ~ 161 (162)
.
T Consensus 170 ~ 170 (173)
T PRK03147 170 K 170 (173)
T ss_pred H
Confidence 4
No 36
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.92 E-value=1.1e-24 Score=155.99 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=105.5
Q ss_pred CCCCCCCCCCeeeeeeecCCCce--eEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQ--QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~--~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
...+|.++|+|+++ +.+|+ .++++++.+||+++|+|| ++|||.|+.+ +|.++++. ++++ ++++|+.+
T Consensus 33 ~~~vG~~ap~f~l~----~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~----~~~~-~vi~V~~~ 101 (173)
T TIGR00385 33 SALIGKPVPAFPLA----ALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAE-HPYLNELA----KDGL-PIVGVDYK 101 (173)
T ss_pred chhcCCCCCCcccc----ccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHH-HHHHHHHH----HcCC-EEEEEECC
Confidence 45789999999999 77776 566677647888888888 8999999998 99987765 3578 99999974
Q ss_pred -CHHHHHHHHHhCCCCCceE-EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHH
Q 038822 81 -DPFVMKAWAKTFPKNKSVK-FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADD 157 (162)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~ 157 (162)
+.+...+|.+++++ +|+ ++.|+++++++.|++. ++| ++|++| +|+|++.+.+.... +++++
T Consensus 102 ~~~~~~~~~~~~~~~--~f~~v~~D~~~~~~~~~~v~--------~~P---~~~~id~~G~i~~~~~G~~~~---~~l~~ 165 (173)
T TIGR00385 102 DQSQNALKFLKELGN--PYQAILIDPNGKLGLDLGVY--------GAP---ETFLVDGNGVILYRHAGPLNN---EVWTE 165 (173)
T ss_pred CChHHHHHHHHHcCC--CCceEEECCCCchHHhcCCe--------eCC---eEEEEcCCceEEEEEeccCCH---HHHHH
Confidence 56777899999998 897 6789999999999987 455 489998 99999999876443 44444
Q ss_pred HHh
Q 038822 158 ILK 160 (162)
Q Consensus 158 il~ 160 (162)
.++
T Consensus 166 ~l~ 168 (173)
T TIGR00385 166 GFL 168 (173)
T ss_pred HHH
Confidence 443
No 37
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.92 E-value=2.9e-24 Score=150.96 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=102.3
Q ss_pred CCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--------CCH
Q 038822 11 PDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV--------NDP 82 (162)
Q Consensus 11 P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~--------d~~ 82 (162)
-+|+++ +.+|++++|+++ +||++||+|| ++|||.|..+ ++.+++++++++++|+ .|++|+. +++
T Consensus 3 ~~f~l~----~~~G~~~~l~~~-~Gk~vvv~~~-as~C~~c~~~-~~~l~~l~~~~~~~~~-~v~~i~~~~~~~~~~d~~ 74 (153)
T TIGR02540 3 YSFEVK----DARGRTVSLEKY-RGKVSLVVNV-ASECGFTDQN-YRALQELHRELGPSHF-NVLAFPCNQFGESEPDSS 74 (153)
T ss_pred ccceeE----CCCCCEecHHHh-CCCEEEEEEe-CCCCCchhhh-HHHHHHHHHHHhhCCe-EEEEEeccccccCCCCCH
Confidence 478888 899999999998 8998888877 9999999998 9999999999999999 9999984 678
Q ss_pred HHHHHHHHh-CCCCCceEEEEcC-----CchHHHHcCCccccccCCCCccc-eeEEEEEc-CCeEEEEEeecCCcceeCC
Q 038822 83 FVMKAWAKT-FPKNKSVKFLADG-----SAKYTHALGLELDLSEKGLGTQS-RRFALLVD-DLKVKAANVESGGDFTVSS 154 (162)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~l~D~-----~~~~~~~~gv~~~~~~~~~~~~~-~~~~~ii~-~g~i~~~~~~~~~~~~~~~ 154 (162)
+.+++|.++ +++ +||+++|. +...+-.|.+... .+.|+ .+++||+| +|+|++.+.+.... ++
T Consensus 75 ~~~~~f~~~~~~~--~fp~~~d~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~tflID~~G~v~~~~~g~~~~---~~ 144 (153)
T TIGR02540 75 KEIESFARRNYGV--TFPMFSKIKILGSEAEPAFRFLVDSS-----KKEPRWNFWKYLVNPEGQVVKFWRPEEPV---EE 144 (153)
T ss_pred HHHHHHHHHhcCC--CCCccceEecCCCCCCcHHHHHHhcC-----CCCCCCccEEEEEcCCCcEEEEECCCCCH---HH
Confidence 899999986 898 99999873 2232333433210 01221 23489998 99999999876443 55
Q ss_pred HHHHHhc
Q 038822 155 ADDILKS 161 (162)
Q Consensus 155 ~~~il~~ 161 (162)
+++.|++
T Consensus 145 l~~~i~~ 151 (153)
T TIGR02540 145 IRPEITA 151 (153)
T ss_pred HHHHHHH
Confidence 5555554
No 38
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=3.4e-24 Score=155.52 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=106.8
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehh--hhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVH--SLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~--~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
.+.+|+++|+|+++ +.+|+.++++ ++ +||++||+|| ++|||.|+++ +|.+++++++ .++ .+++|+.+
T Consensus 45 ~~~vG~~aP~f~l~----d~~G~~v~l~~~~~-~gk~vvl~F~-atwCp~C~~~-lp~l~~~~~~---~~~-~vv~Is~~ 113 (189)
T TIGR02661 45 GPDVGDAAPIFNLP----DFDGEPVRIGGSIA-PGRPTLLMFT-APSCPVCDKL-FPIIKSIARA---EET-DVVMISDG 113 (189)
T ss_pred CCCCCCcCCCcEec----CCCCCEEeccchhc-CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHh---cCC-cEEEEeCC
Confidence 47899999999999 8999999995 44 8999999887 9999999998 9999998754 467 89999999
Q ss_pred CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHH
Q 038822 81 DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDIL 159 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il 159 (162)
+++.+++|.+++++ +++.+. .++++++.|++. +.| .+||+| +|+|++.... + ..+.+++++
T Consensus 114 ~~~~~~~~~~~~~~--~~~~~~-~~~~i~~~y~v~--------~~P---~~~lID~~G~I~~~g~~-~---~~~~le~ll 175 (189)
T TIGR02661 114 TPAEHRRFLKDHEL--GGERYV-VSAEIGMAFQVG--------KIP---YGVLLDQDGKIRAKGLT-N---TREHLESLL 175 (189)
T ss_pred CHHHHHHHHHhcCC--Ccceee-chhHHHHhccCC--------ccc---eEEEECCCCeEEEccCC-C---CHHHHHHHH
Confidence 99999999999998 766543 568899999986 455 489988 9999986321 1 235677777
Q ss_pred hc
Q 038822 160 KS 161 (162)
Q Consensus 160 ~~ 161 (162)
+.
T Consensus 176 ~~ 177 (189)
T TIGR02661 176 EA 177 (189)
T ss_pred HH
Confidence 64
No 39
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=1.5e-23 Score=145.16 Aligned_cols=126 Identities=25% Similarity=0.318 Sum_probs=105.9
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCC-CCcCCHhHHHHhHHHHHhCC---CCeEEEEEcC----
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPT-CSLKHVPGFIEKADELQSKG---VDEILCISVN---- 80 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~-C~~~~~~~l~~~~~~~~~~~---~~~v~~is~d---- 80 (162)
.+|+|++. +.+|++++++++ +||++||+|| ++|||. |..+ ++.++++++++++.+ + ++++||.|
T Consensus 1 ~~p~f~l~----~~~g~~~~l~~~-~gk~~vl~f~-~~~C~~~C~~~-l~~l~~~~~~~~~~~~~~v-~~v~vs~d~~~d 72 (142)
T cd02968 1 IGPDFTLT----DQDGRPVTLSDL-KGKPVLVYFG-YTHCPDVCPTT-LANLAQALKQLGADGGDDV-QVVFISVDPERD 72 (142)
T ss_pred CCCceEEE----cCCCCEEchHHh-CCCEEEEEEE-cCCCcccCHHH-HHHHHHHHHHhhHhhcCce-EEEEEEECCCCC
Confidence 47999999 899999999998 8999999888 689996 9998 999999999998764 8 99999974
Q ss_pred CHHHHHHHHHhCCCCCceEEEEcCC---chHHHHcCCccccccC---CCCccceeEEEEEc-CCeEEEEEe
Q 038822 81 DPFVMKAWAKTFPKNKSVKFLADGS---AKYTHALGLELDLSEK---GLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~---~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
+++.+++|.++++. +|+++.|++ +.+++.||+....... +.++.+.|.+||+| +|+|++++.
T Consensus 73 ~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 73 TPEVLKAYAKAFGP--GWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred CHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 56889999999997 999999976 7899999987543211 12233356799999 999999875
No 40
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=144.75 Aligned_cols=130 Identities=26% Similarity=0.361 Sum_probs=112.8
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
.+.+|+.+|||+|+ |.+|++++|.++..++++|++|||...+|.|.+| ...+++.|++|+..++ +|+++|.|+.
T Consensus 62 ~v~~Gd~iPD~tL~----dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQ-aCgFRDnY~k~kka~a-eV~GlS~D~s 135 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLK----DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQ-ACGFRDNYEKFKKAGA-EVIGLSGDDS 135 (211)
T ss_pred eeecCCcCCCcccc----cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccc-cccccccHHHHhhcCc-eEEeeccCch
Confidence 47899999999999 9999999999985455999999999999999999 9999999999999899 9999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEe
Q 038822 83 FVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANV 144 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~ 144 (162)
..+++|..+.++ ++.+|+||.+++.+.+|+..++ +.|.+ .|..||.++|.++-...
T Consensus 136 ~sqKaF~sKqnl--PYhLLSDpk~e~ik~lGa~k~p---~gg~~-~Rsh~if~kg~~k~~ik 191 (211)
T KOG0855|consen 136 ASQKAFASKQNL--PYHLLSDPKNEVIKDLGAPKDP---FGGLP-GRSHYIFDKGGVKQLIK 191 (211)
T ss_pred HHHHHhhhhccC--CeeeecCcchhHHHHhCCCCCC---CCCcc-cceEEEEecCCeEEEEE
Confidence 999999999999 9999999999999999998532 22444 36688888554433333
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.90 E-value=5.5e-23 Score=140.01 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=101.2
Q ss_pred CCCCCeeeeeeecCCCc--eeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc-CCHHH
Q 038822 8 DPLPDGTLVYFDEQDQL--QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV-NDPFV 84 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g--~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~-d~~~~ 84 (162)
+++|+|+++ +.+| ++++++++ +|+++||.|| ++|||.|..+ ++.++++.+++ ++ +|++|+. ++.+.
T Consensus 1 ~~~p~f~~~----~~~g~~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~-~~~l~~l~~~~---~~-~vv~v~~~~~~~~ 69 (127)
T cd03010 1 KPAPAFSLP----ALPGPDKTLTSADL-KGKPYLLNVW-ASWCAPCREE-HPVLMALARQG---RV-PIYGINYKDNPEN 69 (127)
T ss_pred CCCCCcccc----cccCCCccccHHHc-CCCEEEEEEE-cCcCHHHHHH-HHHHHHHHHhc---Cc-EEEEEECCCCHHH
Confidence 468999999 7777 88999997 8999999999 9999999998 99999987664 58 9999996 67899
Q ss_pred HHHHHHhCCCCCceE-EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 85 MKAWAKTFPKNKSVK-FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 85 ~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
+++|.++++. +|+ ++.|+++.+++.|++. ++|+ +|++| +|+|++.+.|...
T Consensus 70 ~~~~~~~~~~--~~~~~~~D~~~~~~~~~~v~--------~~P~---~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 70 ALAWLARHGN--PYAAVGFDPDGRVGIDLGVY--------GVPE---TFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHHHHHhcCC--CCceEEECCcchHHHhcCCC--------CCCe---EEEECCCceEEEEEeccCC
Confidence 9999999998 775 6799999999999997 4554 88888 9999999987533
No 42
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-22 Score=139.66 Aligned_cols=150 Identities=23% Similarity=0.402 Sum_probs=127.5
Q ss_pred CCCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 2 APIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
..+..|+++|+|+.. +.-..+.+.||++..|.||+-.|++++|+|..| +.++.++..+|..+|+ ..+++|.|+
T Consensus 4 ~~l~lgd~~PNfea~-----Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTE-lgr~Akl~pEF~KRnv-KlialS~d~ 76 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEAD-----TTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTE-LGRFAKLAPEFDKRNV-KLIALSVDD 76 (224)
T ss_pred CcccccCcCCCcccc-----ccccceehhhhcccceEEEecCcccCCcchhHH-HHHHHhhChhhhhcCc-eEEEeehhh
Confidence 357899999999998 456679999998888999999999999999998 9999999999999999 999999999
Q ss_pred HHHHHHHHHhC-------CCCCceEEEEcCCchHHHHcCCcccccc--CCCCccceeEEEEEc-CCeEEEEEeecCCcce
Q 038822 82 PFVMKAWAKTF-------PKNKSVKFLADGSAKYTHALGLELDLSE--KGLGTQSRRFALLVD-DLKVKAANVESGGDFT 151 (162)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~ 151 (162)
.+.++.|.+.. .-..+||++.|++++++-.|++....+. .+.+. +.|+.||++ +-+|+..+.++.. +
T Consensus 77 vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~-T~Ravfvi~pdkKirLs~lYP~t--t 153 (224)
T KOG0854|consen 77 VESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGK-TVRAVFVIDPDKKIRLSFLYPST--T 153 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCc-eEEEEEEECCCceEEEEEEcccc--c
Confidence 99999988765 1013899999999999999999865432 23444 568899998 9999999988743 4
Q ss_pred eCCHHHHHhc
Q 038822 152 VSSADDILKS 161 (162)
Q Consensus 152 ~~~~~~il~~ 161 (162)
.++.+|||+.
T Consensus 154 GRN~dEiLRv 163 (224)
T KOG0854|consen 154 GRNFDEILRV 163 (224)
T ss_pred CcCHHHHHHH
Confidence 6899999875
No 43
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.88 E-value=5e-22 Score=132.69 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=93.8
Q ss_pred CCeeeeeeecCCCceeEehhhhcC-CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHH
Q 038822 11 PDGTLVYFDEQDQLQQVSVHSLAA-GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89 (162)
Q Consensus 11 P~f~l~~~~~~~~g~~~~l~~~~~-gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~ 89 (162)
|+|+++ +.+|+.++|+++ + ||++||+|| ++|||.|+.+ +|.++++++++++ ++ .+++++.++.+..++|.
T Consensus 1 p~f~l~----~~~G~~~~l~~~-~~gk~vvl~F~-~~wC~~C~~~-~p~l~~~~~~~~~-~~-~vi~v~~~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLT----TIDGAPVRIGGI-SPGRPTLLFFL-SPTCPVCKKL-LPVIRSIARAEAD-WL-DVVLASDGEKAEHQRFL 71 (114)
T ss_pred CCceee----cCCCCEEEcccc-cCCCeEEEEEE-CCCCcchHhH-hHHHHHHHHHhcC-Cc-EEEEEeCCCHHHHHHHH
Confidence 789999 899999999997 6 899999988 9999999998 9999999888754 57 88888888889999999
Q ss_pred HhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEE
Q 038822 90 KTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAAN 143 (162)
Q Consensus 90 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~ 143 (162)
+++++ ..+|++.+ ..+++.|++. ++| .+||+| +|+|+|..
T Consensus 72 ~~~~~-~~~p~~~~--~~~~~~~~~~--------~~P---~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 KKHGL-EAFPYVLS--AELGMAYQVS--------KLP---YAVLLDEAGVIAAKG 112 (114)
T ss_pred HHhCC-CCCcEEec--HHHHhhcCCC--------CcC---eEEEECCCCeEEecc
Confidence 99987 23788774 5688999986 455 489999 99999864
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.86 E-value=3.9e-21 Score=156.56 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=110.9
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC---
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN--- 80 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--- 80 (162)
.+.++++|+|++. |.+|+.++++ +||++||.|| ++|||+|+.+ +|.|++++++++..++ +|++|+.+
T Consensus 32 ~~~~~~lP~f~l~----D~dG~~v~ls---kGKpVvV~FW-ATWCppCk~e-mP~L~eL~~e~k~~~v-~VI~Vs~~~~~ 101 (521)
T PRK14018 32 ATVPHTLSTLKTA----DNRPASVYLK---KDKPTLIKFW-ASWCPLCLSE-LGETEKWAQDAKFSSA-NLITVASPGFL 101 (521)
T ss_pred ccccCCCCCeEee----cCCCceeecc---CCCEEEEEEE-cCCCHHHHHH-HHHHHHHHHHhccCCe-EEEEEeccccc
Confidence 4567799999999 9999999987 6899999999 9999999998 9999999999987788 99999862
Q ss_pred ---CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHH
Q 038822 81 ---DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSAD 156 (162)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~ 156 (162)
+.+..++|.+..++ .+++++.|.++++++.|++. ++|+ ++|+| +|+|++...|.... +++.
T Consensus 102 ~e~~~~~~~~~~~~~~y-~~~pV~~D~~~~lak~fgV~--------giPT---t~IIDkdGkIV~~~~G~~~~---eeL~ 166 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDY-PKLPVLTDNGGTLAQSLNIS--------VYPS---WAIIGKDGDVQRIVKGSISE---AQAL 166 (521)
T ss_pred ccccHHHHHHHHHhCCC-cccceeccccHHHHHHcCCC--------CcCe---EEEEcCCCeEEEEEeCCCCH---HHHH
Confidence 34667778887765 25899999999999999997 5665 88888 99999999976543 6666
Q ss_pred HHHh
Q 038822 157 DILK 160 (162)
Q Consensus 157 ~il~ 160 (162)
++|+
T Consensus 167 a~Ie 170 (521)
T PRK14018 167 ALIR 170 (521)
T ss_pred HHHH
Confidence 6655
No 45
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.85 E-value=2.3e-20 Score=126.19 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=96.5
Q ss_pred CCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC--CHHHHHHH
Q 038822 11 PDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN--DPFVMKAW 88 (162)
Q Consensus 11 P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~ 88 (162)
|+|+++ +.+|+.++++++ +|++++|+|| ++|||.|+.. ++.+++++++ + .+++|+.+ +++.+++|
T Consensus 1 p~f~l~----~~~g~~~~~~~~-~~k~~vl~F~-~~~C~~C~~~-~~~l~~~~~~-----~-~~i~i~~~~~~~~~~~~~ 67 (123)
T cd03011 1 PLFTAT----TLDGEQFDLESL-SGKPVLVYFW-ATWCPVCRFT-SPTVNQLAAD-----Y-PVVSVALRSGDDGAVARF 67 (123)
T ss_pred CCceee----cCCCCEeeHHHh-CCCEEEEEEE-CCcChhhhhh-ChHHHHHHhh-----C-CEEEEEccCCCHHHHHHH
Confidence 789999 889999999997 8898989988 8999999997 9999998865 5 77888765 57999999
Q ss_pred HHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 89 AKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 89 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
.+++++ +|+++.|+++++.+.|++. +.| +++|++ +| |++...+..+
T Consensus 68 ~~~~~~--~~~~~~d~~~~~~~~~~i~--------~~P---~~~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 68 MQKKGY--GFPVINDPDGVISARWGVS--------VTP---AIVIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred HHHcCC--CccEEECCCcHHHHhCCCC--------ccc---EEEEEcCCC-eEEEEeccCC
Confidence 999998 9999999999999999986 444 489998 77 9999887544
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.85 E-value=1.8e-20 Score=123.88 Aligned_cols=113 Identities=28% Similarity=0.461 Sum_probs=100.2
Q ss_pred CeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC--HHHHHHHH
Q 038822 12 DGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND--PFVMKAWA 89 (162)
Q Consensus 12 ~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~--~~~~~~~~ 89 (162)
+|++. +.+|+.++++++ ++|+++|+|| ++|||.|... ++.+.++.+++.+.++ .+++|+.|+ ++..++|.
T Consensus 1 ~~~~~----~~~g~~~~~~~~-~~k~~ll~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~~-~~~~v~~d~~~~~~~~~~~ 72 (116)
T cd02966 1 DFSLP----DLDGKPVSLSDL-KGKVVLVNFW-ASWCPPCRAE-MPELEALAKEYKDDGV-EVVGVNVDDDDPAAVKAFL 72 (116)
T ss_pred Ccccc----CCCCCEeehHHc-CCCEEEEEee-cccChhHHHH-hHHHHHHHHHhCCCCe-EEEEEECCCCCHHHHHHHH
Confidence 46667 789999999997 7998888888 7899999998 9999999999987788 999999987 89999999
Q ss_pred HhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEee
Q 038822 90 KTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 90 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
++++. +++++.|++..+.+.|++. +.| .++|+| +|+|++.+.+
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~~~~--------~~P---~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 73 KKYGI--TFPVLLDPDGELAKAYGVR--------GLP---TTFLIDRDGRIRARHVG 116 (116)
T ss_pred HHcCC--CcceEEcCcchHHHhcCcC--------ccc---eEEEECCCCcEEEEecC
Confidence 99998 9999999999999999986 444 488998 9999998753
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.85 E-value=5.6e-21 Score=132.65 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=85.2
Q ss_pred eeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC-------CCCeEEEEEcC-CHHHHHHHHHhCCCCC
Q 038822 25 QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK-------GVDEILCISVN-DPFVMKAWAKTFPKNK 96 (162)
Q Consensus 25 ~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~-------~~~~v~~is~d-~~~~~~~~~~~~~~~~ 96 (162)
..++|+++ +||+++|+|| ++|||+|+.+ +|.|.+++++++++ ++ +|++||.| +.+..++|+++++.
T Consensus 16 ~~~~ls~~-kgk~vlL~Fw-AsWCppCr~e-~P~L~~ly~~~~~~~~~~~~~~~-~vV~Vs~D~~~~~~~~f~~~~~~-- 89 (146)
T cd03008 16 EREIVARL-ENRVLLLFFG-AVVSPQCQLF-APKLKDFFVRLTDEFYVDRSAQL-ALVYVSMDQSEQQQESFLKDMPK-- 89 (146)
T ss_pred ccccHHHh-CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHHHhhcccccCCCE-EEEEEECCCCHHHHHHHHHHCCC--
Confidence 45689998 9999999999 9999999998 99999999988754 68 99999997 45668899999986
Q ss_pred ce---EEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 97 SV---KFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 97 ~~---~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
+| ++..+.++.+++.|++. ++|+ +|++| +|+|+....
T Consensus 90 ~~~~~p~~~~~~~~l~~~y~v~--------~iPt---~vlId~~G~Vv~~~~ 130 (146)
T cd03008 90 KWLFLPFEDEFRRELEAQFSVE--------ELPT---VVVLKPDGDVLAANA 130 (146)
T ss_pred CceeecccchHHHHHHHHcCCC--------CCCE---EEEECCCCcEEeeCh
Confidence 55 33444456899999986 6665 99999 999998753
No 48
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.85 E-value=1.4e-20 Score=134.99 Aligned_cols=126 Identities=18% Similarity=0.138 Sum_probs=97.9
Q ss_pred CCCCCCCCCeeeee-----e-ecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeE---
Q 038822 4 IAVGDPLPDGTLVY-----F-DEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEI--- 74 (162)
Q Consensus 4 l~~G~~~P~f~l~~-----~-~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v--- 74 (162)
+++|+++|..++.- + ..+.+.++++.+++ +||..||.|| ++||+.|+.+ .|.+.++ +++++ .+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l-~GKV~lvn~~-Aswc~~c~~e-~P~l~~l----~~~~~-~~~~y 94 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL-AGKVRVVHHI-AGRTSAKEXN-ASLIDAI----KAAKF-PPVKY 94 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc-CCCEEEEEEE-ecCCChhhcc-chHHHHH----HHcCC-Ccccc
Confidence 78999999997750 0 01235578889997 8998888888 8999999998 8888888 55677 78
Q ss_pred ---EEEEcCC-HHH----HHHHHHhCCCCCceE---EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEE
Q 038822 75 ---LCISVND-PFV----MKAWAKTFPKNKSVK---FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAA 142 (162)
Q Consensus 75 ---~~is~d~-~~~----~~~~~~~~~~~~~~~---~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~ 142 (162)
++|+.|+ ... .+.|.++.+. .|| ++.|+++.++.+||+. +.|+ ++||+| +|+|++.
T Consensus 95 ~~t~~IN~dd~~~~~~~fVk~fie~~~~--~~P~~~vllD~~g~v~~~~gv~--------~~P~--T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 95 QTTTIINADDAIVGTGMFVKSSAKKGKK--ENPWSQVVLDDKGAVKNAWQLN--------SEDS--AIIVLDKTGKVKFV 162 (184)
T ss_pred cceEEEECccchhhHHHHHHHHHHHhcc--cCCcceEEECCcchHHHhcCCC--------CCCc--eEEEECCCCcEEEE
Confidence 9999874 333 4456666666 666 9999999999999997 5654 238999 9999999
Q ss_pred EeecCCc
Q 038822 143 NVESGGD 149 (162)
Q Consensus 143 ~~~~~~~ 149 (162)
+.|....
T Consensus 163 ~~G~l~~ 169 (184)
T TIGR01626 163 KEGALSD 169 (184)
T ss_pred EeCCCCH
Confidence 9987443
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=1.4e-20 Score=165.08 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=113.5
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEeh-hhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSV-HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV-- 79 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l-~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~-- 79 (162)
....|+++|+|..+.. ..+|+++++ +++ +||++||.|| ++|||+|+.+ +|.|++++++++++++ .|++|+.
T Consensus 390 ~~~~g~~~p~f~~~~~--~~~g~~~~l~~~l-kGK~vll~FW-AsWC~pC~~e-~P~L~~l~~~y~~~~~-~vvgV~~~~ 463 (1057)
T PLN02919 390 SKKTATKVPEFPPKLD--WLNTAPLQFRRDL-KGKVVILDFW-TYCCINCMHV-LPDLEFLEKKYKDQPF-TVVGVHSAK 463 (1057)
T ss_pred ccccCCcCCCCccccc--ccCCccccchhhc-CCCEEEEEEE-CCcChhHHhH-hHHHHHHHHHcCCCCe-EEEEEeccc
Confidence 4567999999998711 257889998 576 9999999998 9999999998 9999999999998889 9999973
Q ss_pred -C---CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCC
Q 038822 80 -N---DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSS 154 (162)
Q Consensus 80 -d---~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~ 154 (162)
| +.+..++|.+++++ +||++.|.++++.+.|++. ++|+ ++|+| +|+|++.+.+.... ++
T Consensus 464 ~D~~~~~~~~~~~~~~~~i--~~pvv~D~~~~~~~~~~V~--------~iPt---~ilid~~G~iv~~~~G~~~~---~~ 527 (1057)
T PLN02919 464 FDNEKDLEAIRNAVLRYNI--SHPVVNDGDMYLWRELGVS--------SWPT---FAVVSPNGKLIAQLSGEGHR---KD 527 (1057)
T ss_pred ccccccHHHHHHHHHHhCC--CccEEECCchHHHHhcCCC--------ccce---EEEECCCCeEEEEEecccCH---HH
Confidence 2 45678889999998 9999999999999999987 5664 99998 99999998765442 56
Q ss_pred HHHHHh
Q 038822 155 ADDILK 160 (162)
Q Consensus 155 ~~~il~ 160 (162)
++++++
T Consensus 528 l~~~l~ 533 (1057)
T PLN02919 528 LDDLVE 533 (1057)
T ss_pred HHHHHH
Confidence 666554
No 50
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.7e-20 Score=124.91 Aligned_cols=132 Identities=30% Similarity=0.414 Sum_probs=114.7
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
.+++|+++|+|++. +.+.+.++|+++ +||..||..||+-.+|+|..+ ...+++.+.++. ++ .|+.||.|.|
T Consensus 17 ~~~vGd~ap~ftl~----~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~q-vr~Fn~~aa~~~--~~-~Vl~IS~DLP 87 (158)
T COG2077 17 EPQVGDKAPDFTLV----GKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQ-VRKFNEEAAKLG--NT-VVLCISMDLP 87 (158)
T ss_pred CCccCCcCCceEEE----cCcccceecccc-CCceEEEEEccCCCCchhhHH-HHHHHHHHhccC--Cc-EEEEEeCCCh
Confidence 48999999999999 899999999998 999999999999999999998 999999998875 46 8999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEcCC-chHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeec
Q 038822 83 FVMKAWAKTFPKNKSVKFLADGS-AKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVES 146 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~ 146 (162)
..+.+|+..+|+ .+...+||.. ..+.++||+...-... -|.. .|+.|++| +|+|+|..+.+
T Consensus 88 FAq~RfC~aeGi-~nv~~lSd~r~~~Fge~yGv~I~egpL-~gLl-ARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 88 FAQKRFCGAEGI-ENVITLSDFRDRAFGENYGVLINEGPL-AGLL-ARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred hHHhhhhhhcCc-ccceEhhhhhhhhhhHhhCEEeccccc-cCee-eeEEEEEcCCCcEEEEEccc
Confidence 999999999997 4689999965 6799999998742111 1443 58899999 99999999854
No 51
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.80 E-value=3.7e-18 Score=122.92 Aligned_cols=85 Identities=9% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--------
Q 038822 8 DPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV-------- 79 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~-------- 79 (162)
..+++|+++ +.+|++++|+++ +||++||+|| ++||+.| .+ ++.|++++++++++|+ +|++++.
T Consensus 3 ~~~~~f~~~----~~~G~~v~Ls~~-~GKvvLVvf~-AS~C~~~-~q-~~~L~~L~~~y~~~gl-~Vlg~p~nqf~~qe~ 73 (183)
T PRK10606 3 DSILTTVVT----TIDGEVTTLEKY-AGNVLLIVNV-ASKCGLT-PQ-YEQLENIQKAWADQGF-VVLGFPCNQFLGQEP 73 (183)
T ss_pred CCccCcEeE----CCCCCEEeHHHh-CCCEEEEEEE-eCCCCCc-HH-HHHHHHHHHHHhhCCe-EEEEeeccccccCCC
Confidence 468899999 899999999998 8998888887 9999988 57 9999999999999999 9999987
Q ss_pred CCHHHHHHHHH-hCCCCCceEEEEc
Q 038822 80 NDPFVMKAWAK-TFPKNKSVKFLAD 103 (162)
Q Consensus 80 d~~~~~~~~~~-~~~~~~~~~~l~D 103 (162)
++.+++++|++ +++. +||++++
T Consensus 74 ~~~~ei~~f~~~~~g~--~Fpv~~k 96 (183)
T PRK10606 74 GSDEEIKTYCRTTWGV--TFPMFSK 96 (183)
T ss_pred CCHHHHHHHHHHccCC--CceeEEE
Confidence 47788999997 7888 9999944
No 52
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.79 E-value=4.5e-19 Score=121.29 Aligned_cols=109 Identities=23% Similarity=0.394 Sum_probs=86.2
Q ss_pred CCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC--CCCeEEEEEcCC-HHHHHHHHHhCCCCCc
Q 038822 21 QDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK--GVDEILCISVND-PFVMKAWAKTFPKNKS 97 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~--~~~~v~~is~d~-~~~~~~~~~~~~~~~~ 97 (162)
+.+|+.++|+++ +||+++|+|| ++|||.|+.+ +|.+++++++++++ ++ +|++|+.|. .+..+++.++.++ ..
T Consensus 5 ~~~G~~v~l~~~-~gk~vll~Fw-a~wC~~C~~~-~p~l~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~-~~ 79 (131)
T cd03009 5 RNDGGKVPVSSL-EGKTVGLYFS-ASWCPPCRAF-TPKLVEFYEKLKESGKNF-EIVFISWDRDEESFNDYFSKMPW-LA 79 (131)
T ss_pred ccCCCCccHHHh-CCcEEEEEEE-CCCChHHHHH-hHHHHHHHHHHHhcCCCE-EEEEEECCCCHHHHHHHHHcCCe-eE
Confidence 689999999997 8998888888 7999999998 99999999999865 67 899999874 4556677776653 12
Q ss_pred eEEE-EcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEee
Q 038822 98 VKFL-ADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 98 ~~~l-~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
+++. +|.+..+++.||+. ++|+ ++|+| +|+|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~v~--------~~P~---~~lid~~G~i~~~~~~ 118 (131)
T cd03009 80 VPFSDRERRSRLNRTFKIE--------GIPT---LIILDADGEVVTTDAR 118 (131)
T ss_pred cccCCHHHHHHHHHHcCCC--------CCCE---EEEECCCCCEEcccHH
Confidence 2222 35557899999997 5554 99999 9999987653
No 53
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.78 E-value=8.8e-19 Score=120.18 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=83.8
Q ss_pred eeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC--CCCeEEEEEcC-CHHHHHHHHHhCCCCCceEEE
Q 038822 25 QQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK--GVDEILCISVN-DPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 25 ~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~--~~~~v~~is~d-~~~~~~~~~~~~~~~~~~~~l 101 (162)
++++|+++ +||.++|+|| ++|||.|+.+ ++.++++++++++. ++ +|++|+.| +.+..++|.++++. ......
T Consensus 8 ~~v~l~~~-~Gk~vll~F~-atwC~~C~~~-~p~l~~l~~~~~~~~~~v-~vi~Vs~d~~~~~~~~~~~~~~~-~~~~~~ 82 (132)
T cd02964 8 GVVPVSAL-EGKTVGLYFS-ASWCPPCRAF-TPKLVEFYEKLKEEGKNF-EIVFVSRDRSEESFNEYFSEMPP-WLAVPF 82 (132)
T ss_pred ccccHHHh-CCCEEEEEEE-CCCCchHHHH-HHHHHHHHHHHhhcCCCe-EEEEEecCCCHHHHHHHHhcCCC-eEeecc
Confidence 69999998 9998888888 9999999998 99999999999875 78 89999987 45788899999861 122222
Q ss_pred Ec--CCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEee
Q 038822 102 AD--GSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 102 ~D--~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
.| ....+++.|++. ++|+ ++|+| +|+|++....
T Consensus 83 ~d~~~~~~~~~~~~v~--------~iPt---~~lid~~G~iv~~~~~ 118 (132)
T cd02964 83 EDEELRELLEKQFKVE--------GIPT---LVVLKPDGDVVTTNAR 118 (132)
T ss_pred CcHHHHHHHHHHcCCC--------CCCE---EEEECCCCCEEchhHH
Confidence 33 235788889987 5664 89999 9999987754
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.77 E-value=1.2e-18 Score=124.49 Aligned_cols=107 Identities=10% Similarity=0.022 Sum_probs=83.7
Q ss_pred CCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH
Q 038822 5 AVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV 84 (162)
Q Consensus 5 ~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~ 84 (162)
.+..+-|+|++. +|+.++++++ + +|+|| ++|||+|+++ +|.|+++++++ ++ .|++|+.|...
T Consensus 50 ~~~~~~~~f~l~------dG~~v~lsd~-~----lV~Fw-aswCp~C~~e-~P~L~~l~~~~---g~-~Vi~Vs~D~~~- 111 (181)
T PRK13728 50 TEKPAPRWFRLS------NGRQVNLADW-K----VVLFM-QGHCPYCHQF-DPVLKQLAQQY---GF-SVFPYTLDGQG- 111 (181)
T ss_pred cCCCCCCccCCC------CCCEeehhHc-e----EEEEE-CCCCHhHHHH-HHHHHHHHHHc---CC-EEEEEEeCCCC-
Confidence 345567788887 7899999998 5 66676 8999999999 99999999886 68 99999987432
Q ss_pred HHHHHHhCCCCCceEEEEc-CCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEE-EEeecCC
Q 038822 85 MKAWAKTFPKNKSVKFLAD-GSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKA-ANVESGG 148 (162)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D-~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~-~~~~~~~ 148 (162)
.. .||++.| .++.+.+.||+.. .++|+ +|++| +|++++ +++|...
T Consensus 112 --------~~--~fPv~~dd~~~~~~~~~g~~~------~~iPt---tfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 --------DT--AFPEALPAPPDVMQTFFPNIP------VATPT---TFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred --------CC--CCceEecCchhHHHHHhCCCC------CCCCe---EEEEeCCCcEEEEEEECCCC
Confidence 24 8999996 6677888998521 14554 99999 999975 7887644
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.65 E-value=5.4e-16 Score=100.20 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=71.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH-hCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEEcC---CchHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ-SKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLADG---SAKYT 109 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~-~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~D~---~~~~~ 109 (162)
||+++|+|| ++||+.|.++ ++.|.+++++++ +.++ ++++||.|. .+..++++++.+. ++..+... ...+.
T Consensus 1 gK~~ll~fw-a~~c~~c~~~-~~~l~~l~~~~~~~~~v-~~v~Vs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKE-LPKLKELYKKYKKKDDV-EFVFVSLDEDEEEWKKFLKKNNF--PWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHH-HHHHHHHHHHHTTTTTE-EEEEEE-SSSHHHHHHHHHTCTT--SSEEEETTTHHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHhCCCCCE-EEEEEEeCCCHHHHHHHHHhcCC--CceEEeeCcchHHHHH
Confidence 688888888 8999999998 999999999998 6678 999999975 5888999999976 66655443 46899
Q ss_pred HHcCCccccccCCCCccceeEEEEEc-CCeE
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVD-DLKV 139 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i 139 (162)
+.|++. ++|+ ++|+| +|+|
T Consensus 76 ~~~~i~--------~iP~---~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGIN--------GIPT---LVLLDPDGKI 95 (95)
T ss_dssp HHTT-T--------SSSE---EEEEETTSBE
T ss_pred HHCCCC--------cCCE---EEEECCCCCC
Confidence 999997 5664 88888 9987
No 56
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.60 E-value=7.5e-15 Score=105.24 Aligned_cols=131 Identities=22% Similarity=0.297 Sum_probs=98.3
Q ss_pred CCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC--CCCeEEEEEcC---
Q 038822 6 VGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK--GVDEILCISVN--- 80 (162)
Q Consensus 6 ~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~--~~~~v~~is~d--- 80 (162)
.....|+|+|. |++|++++++++ +||+++|+|....|-.+|+.. +..|.++.+++.+. .+ +++.||.|
T Consensus 28 ~~~~~~~f~L~----d~~G~~~~~~~~-~Gk~~lv~F~yT~CpdvCp~~-l~~l~~~~~~l~~~~~~v-~~v~ISvDP~~ 100 (174)
T PF02630_consen 28 NPRIVPDFTLT----DQDGKTVTLDDL-KGKWVLVFFGYTRCPDVCPTT-LANLSQLQKQLGEEGKDV-QFVFISVDPER 100 (174)
T ss_dssp TSCSSST-EEE----ETTSSEEEGGGG-TTSEEEEEEE-TTSSSHHHHH-HHHHHHHHHHHHHTTTTE-EEEEEESSTTT
T ss_pred CCccCCCcEEE----cCCCCEecHHHh-CCCeEEEEEEEcCCCccCHHH-HHHHHHHHHHhhhccCce-EEEEEEeCCCC
Confidence 34568899999 999999999997 999999999977766799997 99999999999864 56 89999985
Q ss_pred -CHHHHHHHHHhCCCCCceEEEEc---CCchHHHHcCCcccccc-----CCCCccceeEEEEEc-CCeEEEEEee
Q 038822 81 -DPFVMKAWAKTFPKNKSVKFLAD---GSAKYTHALGLELDLSE-----KGLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~D---~~~~~~~~~gv~~~~~~-----~~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
+++.+++|.+.++. ++..+.- .-.++++.|++...... ..+.+-+...++++| +|+|+..+.+
T Consensus 101 DTp~~L~~Y~~~~~~--~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 101 DTPEVLKKYAKKFGP--DFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp C-HHHHHHHHHCHTT--TCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CCHHHHHHHHHhcCC--CcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 68999999999986 5554432 22678899998764211 112232345688888 9999998854
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=9.2e-15 Score=102.51 Aligned_cols=104 Identities=10% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 22 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
..|+.++++++ .+|+|| ++|||+|+++ +|.++++++++ ++ .|++|+.|.... . .|+..
T Consensus 42 ~~G~~~~l~~~-----~lvnFW-AsWCppCr~e-~P~L~~l~~~~---~~-~Vi~Vs~d~~~~---------~--~fp~~ 99 (153)
T TIGR02738 42 PQGRHANQDDY-----ALVFFY-QSTCPYCHQF-APVLKRFSQQF---GL-PVYAFSLDGQGL---------T--GFPDP 99 (153)
T ss_pred CcchhhhcCCC-----EEEEEE-CCCChhHHHH-HHHHHHHHHHc---CC-cEEEEEeCCCcc---------c--ccccc
Confidence 34666666654 478888 8999999998 99999999876 57 899999875321 1 45555
Q ss_pred EcCCchHH-HHc---CCccccccCCCCccceeEEEEEc-CCeE-EEEEeecCCcceeCCHHHHHhc
Q 038822 102 ADGSAKYT-HAL---GLELDLSEKGLGTQSRRFALLVD-DLKV-KAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 102 ~D~~~~~~-~~~---gv~~~~~~~~~~~~~~~~~~ii~-~g~i-~~~~~~~~~~~~~~~~~~il~~ 161 (162)
.|.+.... +.| ++. ++|+ +|++| +|++ +.++.+.... +++++.++.
T Consensus 100 ~~~~~~~~~~~~~~~~v~--------~iPT---t~LID~~G~~i~~~~~G~~s~---~~l~~~I~~ 151 (153)
T TIGR02738 100 LPATPEVMQTFFPNPRPV--------VTPA---TFLVNVNTRKAYPVLQGAVDE---AELANRMDE 151 (153)
T ss_pred cCCchHHHHHHhccCCCC--------CCCe---EEEEeCCCCEEEEEeecccCH---HHHHHHHHH
Confidence 55444443 445 443 4554 99998 8775 5467765443 556655544
No 58
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.45 E-value=3.5e-12 Score=93.74 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=98.0
Q ss_pred CeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH-h--CCCCeEEEEEcC----CHHH
Q 038822 12 DGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ-S--KGVDEILCISVN----DPFV 84 (162)
Q Consensus 12 ~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~-~--~~~~~v~~is~d----~~~~ 84 (162)
+|+|. |++|+.+++.++ +||+.+|+|....|..+|+.. +..+..+.+++. . ..+ +++.||.| +++.
T Consensus 49 ~f~l~----d~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v-~vv~itvDPerDtp~~ 121 (207)
T COG1999 49 DFELT----DQDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDV-QVVFITVDPERDTPEV 121 (207)
T ss_pred ceeee----cCCCCEeecccc-CCCEEEEEeecCCCCccChHH-HHHHHHHHHHhccccCCCE-EEEEEEECCCCCCHHH
Confidence 79999 999999999997 999999999977766699998 999999999997 3 345 67888875 6888
Q ss_pred HHHHHHhCCCCCceEEEEc-CC--chHHHHcCCccc---cccC-CCCccceeEEEEEc-CCeEEEEEeec
Q 038822 85 MKAWAKTFPKNKSVKFLAD-GS--AKYTHALGLELD---LSEK-GLGTQSRRFALLVD-DLKVKAANVES 146 (162)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D-~~--~~~~~~~gv~~~---~~~~-~~~~~~~~~~~ii~-~g~i~~~~~~~ 146 (162)
+++|.+ +++...|..+.. ++ .++++.|++... ..+. .+.+-+...+|++| +|+++..+...
T Consensus 122 lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~ 190 (207)
T COG1999 122 LKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG 190 (207)
T ss_pred HHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC
Confidence 888888 333335666655 22 678899999852 1111 34455567788999 99999999865
No 59
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.37 E-value=8.8e-13 Score=91.55 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCceeEehhhhc-CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceE
Q 038822 21 QDQLQQVSVHSLA-AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVK 99 (162)
Q Consensus 21 ~~~g~~~~l~~~~-~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~ 99 (162)
+.+.+...+.+.. +|+++||+|| ++||+.|+.. ++.+.++++++.+. + .++.|..|...
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~-~p~l~~l~~~~~~~-~-~~v~v~vd~~~---------------- 64 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEM-APDVAKLKQKYGDQ-V-NFVMLNVDNPK---------------- 64 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHh-HHHHHHHHHHhccC-e-eEEEEEcCCcc----------------
Confidence 4455566665543 5778888888 8999999998 99999999998653 6 78888876421
Q ss_pred EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 100 FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 100 ~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
...+++.|++. ++|+ +++++ +|+++....|.... ++++++|++
T Consensus 65 -----~~~~~~~~~V~--------~iPt---~v~~~~~G~~v~~~~G~~~~---~~l~~~l~~ 108 (142)
T cd02950 65 -----WLPEIDRYRVD--------GIPH---FVFLDREGNEEGQSIGLQPK---QVLAQNLDA 108 (142)
T ss_pred -----cHHHHHHcCCC--------CCCE---EEEECCCCCEEEEEeCCCCH---HHHHHHHHH
Confidence 12467889887 5664 88888 99999999875432 555555543
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.37 E-value=1e-11 Score=86.19 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=85.0
Q ss_pred CCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC--CCCeEEEEEcC-CHHHHHHHHHhCCCCCc
Q 038822 21 QDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK--GVDEILCISVN-DPFVMKAWAKTFPKNKS 97 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~--~~~~v~~is~d-~~~~~~~~~~~~~~~~~ 97 (162)
..+|..+..++.++|| +|...|++.|||+|+.= -|.|.+++++.++. .+ +|+.||.| +.+.+..|++.++- .
T Consensus 19 ~~~~~~~~~~~~l~gK-vV~lyFsA~wC~pCR~F-TP~Lk~fYe~l~~~~~~f-EVvfVS~D~~~~~~~~y~~~~~~--~ 93 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGK-VVGLYFSAHWCPPCRDF-TPILKDFYEELKDNAAPF-EVVFVSSDRDEESLDEYMLEHHG--D 93 (157)
T ss_pred ccCCccchHhHhhCCc-EEEEEEEEEECCchhhC-CchHHHHHHHHHhcCCce-EEEEEecCCCHHHHHHHHHhcCC--C
Confidence 6788889888767887 66666679999999996 99999999999865 37 88999997 46777888887655 6
Q ss_pred eEEEEc---CCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 98 VKFLAD---GSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 98 ~~~l~D---~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
+..+.= -..++.+.|++. ++|+ ..+++ ||+++....
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~--------~iP~---l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEVK--------GIPA---LVILKPDGTVVTEDA 133 (157)
T ss_pred eEEecCCCHHHHHHHHhcccC--------cCce---eEEecCCCCEehHhh
Confidence 665543 337888999997 5664 77888 998876654
No 61
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.32 E-value=1.1e-11 Score=81.38 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=60.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
+|+++||.|| ++||++|+.. .|.+.++++++ .++ .++.|+.|..... ..++++|+
T Consensus 14 ~~k~vvv~F~-a~wC~~C~~~-~p~l~~la~~~--~~v-~~~~vd~d~~~~~--------------------~~l~~~~~ 68 (103)
T cd02985 14 KGRLVVLEFA-LKHSGPSVKI-YPTMVKLSRTC--NDV-VFLLVNGDENDST--------------------MELCRREK 68 (103)
T ss_pred CCCEEEEEEE-CCCCHhHHHH-hHHHHHHHHHC--CCC-EEEEEECCCChHH--------------------HHHHHHcC
Confidence 6888888888 8999999998 99999999988 457 7888887642211 25778888
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGG 148 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~ 148 (162)
+. ++|+ ++++.+|+++..+.|...
T Consensus 69 V~--------~~Pt---~~~~~~G~~v~~~~G~~~ 92 (103)
T cd02985 69 II--------EVPH---FLFYKDGEKIHEEEGIGP 92 (103)
T ss_pred CC--------cCCE---EEEEeCCeEEEEEeCCCH
Confidence 87 5663 666669999988877533
No 62
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.29 E-value=2.6e-11 Score=80.66 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
++++++|.|| ++||+.|+.. .|.+.++.+++++.++ .+..|..+. +..++++|+
T Consensus 23 ~~~~vlV~F~-a~wC~~C~~~-~p~~~~l~~~~~~~~v-~~~~vd~d~-----------------------~~~l~~~~~ 76 (111)
T cd02963 23 FKKPYLIKIT-SDWCFSCIHI-EPVWKEVIQELEPLGV-GIATVNAGH-----------------------ERRLARKLG 76 (111)
T ss_pred CCCeEEEEEE-CCccHhHHHh-hHHHHHHHHHHHhcCc-eEEEEeccc-----------------------cHHHHHHcC
Confidence 5788888888 8999999997 9999999999987667 777776652 245788999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhcC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKSL 162 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~l 162 (162)
+. ++|+ +++.++|+++....+... .+++.+.|++|
T Consensus 77 V~--------~~Pt---~~i~~~g~~~~~~~G~~~---~~~l~~~i~~~ 111 (111)
T cd02963 77 AH--------SVPA---IVGIINGQVTFYHDSSFT---KQHVVDFVRKL 111 (111)
T ss_pred Cc--------cCCE---EEEEECCEEEEEecCCCC---HHHHHHHHhcC
Confidence 87 5664 787889998877765433 36677777664
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.27 E-value=1e-11 Score=94.81 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=71.0
Q ss_pred CceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEE
Q 038822 23 QLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 23 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (162)
..+..+++++ +|+++||+|| ++|||.|+.+ +|.|+++++++ ++ .|++|+.|.... ..||.+
T Consensus 155 ~~~~~~l~~l-~~k~~Lv~F~-AswCp~C~~~-~P~L~~la~~y---g~-~Vi~VsvD~~~~-----------~~fp~~- 215 (271)
T TIGR02740 155 KQKDRVMKDL-AKKSGLFFFF-KSDCPYCHQQ-APILQAFEDRY---GI-EVLPVSVDGGPL-----------PGFPNA- 215 (271)
T ss_pred HHHHHHHHHh-cCCeEEEEEE-CCCCccHHHH-hHHHHHHHHHc---Cc-EEEEEeCCCCcc-----------ccCCcc-
Confidence 3455788997 8998888888 7899999998 99999999886 57 899999985321 135544
Q ss_pred cCCchHHHHcCCccccccCCCCccceeEEEEEc-C-CeEEEEEeecCC
Q 038822 103 DGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-D-LKVKAANVESGG 148 (162)
Q Consensus 103 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~-g~i~~~~~~~~~ 148 (162)
+.+..+++.||+. ++|+ +|+++ + |+|..+..|...
T Consensus 216 ~~d~~la~~~gV~--------~vPt---l~Lv~~~~~~v~~v~~G~~s 252 (271)
T TIGR02740 216 RPDAGQAQQLKIR--------TVPA---VFLADPDPNQFTPIGFGVMS 252 (271)
T ss_pred cCCHHHHHHcCCC--------cCCe---EEEEECCCCEEEEEEeCCCC
Confidence 4566689999997 5664 88887 4 566666665433
No 64
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.25 E-value=2.7e-11 Score=89.42 Aligned_cols=137 Identities=14% Similarity=0.171 Sum_probs=100.0
Q ss_pred CCCCCCCCCCeeeeeeecCCCcee-EehhhhcC-CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc-
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQ-VSVHSLAA-GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV- 79 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~-~~l~~~~~-gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~- 79 (162)
...+|.+|||..+. ..+|+. .++.||.+ ++|+||+|-+.+ ||+=... +..++++.++|.+. + +++.|.+
T Consensus 72 ~a~~G~~APns~vv----~l~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~-l~~f~~l~~~f~d~-a-dFl~VYI~ 143 (237)
T PF00837_consen 72 EAKLGGPAPNSPVV----TLDGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAK-LDAFKRLVEDFSDV-A-DFLIVYIE 143 (237)
T ss_pred ceeCCCCCCCCceE----eeCCCcceeHHHhccCCCCeEEEccccc-chHHHHH-HHHHHHHHHHhhhh-h-heehhhHh
Confidence 35789999999999 678887 99999964 579999998666 9999996 99999999999874 3 5555532
Q ss_pred -----C---------------C-HHH--HHHHHHhCCCCCceEEEEcCC-chHHHHcCCccccccCCCCccceeEEEEEc
Q 038822 80 -----N---------------D-PFV--MKAWAKTFPKNKSVKFLADGS-AKYTHALGLELDLSEKGLGTQSRRFALLVD 135 (162)
Q Consensus 80 -----d---------------~-~~~--~~~~~~~~~~~~~~~~l~D~~-~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~ 135 (162)
| + .++ ..+.+++... .+|++.|.- +...+.||..- -+ .||+.
T Consensus 144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~--~~pi~vD~mdN~~~~~YgA~P--------eR----lyIi~ 209 (237)
T PF00837_consen 144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFP--QCPIVVDTMDNNFNKAYGALP--------ER----LYIIQ 209 (237)
T ss_pred hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCC--CCCEEEEccCCHHHHHhCCCc--------ce----EEEEE
Confidence 1 0 111 1223334434 899999964 78889999862 22 77888
Q ss_pred CCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 136 DLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 136 ~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
||+|+|.--..+-....+++++.|++
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 99999987644333345788888775
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.20 E-value=1e-10 Score=76.59 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=63.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| ++||+.|+.. .|.+.++++++++..+ .++.+..|. .+++++|+
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~-~p~l~~~~~~~~~~~~-~~~~vd~d~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAV-VSLFKKIKNELGDDLL-HFATAEADT------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHH-hHHHHHHHHHcCCCcE-EEEEEeCCC------------------------HHHHHHcC
Confidence 4677888888 9999999997 9999999988865445 566666652 23568899
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhcC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKSL 162 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~l 162 (162)
+. +.|+ +++.++|+++....|... +.+.+.+++|
T Consensus 69 v~--------~~Pt---~~~~~~g~~~~~~~G~~~----~~~~~~i~~~ 102 (102)
T cd02948 69 GK--------CEPT---FLFYKNGELVAVIRGANA----PLLNKTITEL 102 (102)
T ss_pred CC--------cCcE---EEEEECCEEEEEEecCCh----HHHHHHHhhC
Confidence 87 4553 666679999988887432 5566666554
No 66
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=99.18 E-value=1.1e-09 Score=79.55 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=95.5
Q ss_pred CceeEehhhhcCCCe-EEEEEee-----CCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCC
Q 038822 23 QLQQVSVHSLAAGKK-VILFGVP-----GDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNK 96 (162)
Q Consensus 23 ~g~~~~l~~~~~gk~-vvl~f~~-----~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~ 96 (162)
...+++|++++.|+. +||+-|. ..-||.|... +..++.....+.++++ .+++||..+.+++.+|.++.|+
T Consensus 54 ~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~-~D~~~g~l~hL~~rd~-tfa~vSraP~~~i~afk~rmGW-- 129 (211)
T PF05988_consen 54 PDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFW-ADHIDGALRHLHARDT-TFAVVSRAPLEKIEAFKRRMGW-- 129 (211)
T ss_pred CCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhh-HhhhhhhHHHHHhCCc-eEEEEeCCCHHHHHHHHHhcCC--
Confidence 344599999998874 5566654 5679999997 9999999999999999 9999999999999999999999
Q ss_pred ceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 97 SVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 97 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
+||.+|..+..+..+|++..+.+....|+ ..|+-++|+|.+.+...
T Consensus 130 ~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~----svF~Rdg~~VfhTyst~ 175 (211)
T PF05988_consen 130 TFPWYSSYGSDFNYDFGVSFDEGGEMPGL----SVFLRDGGRVFHTYSTY 175 (211)
T ss_pred CceEEEcCCCcccccccceeccCCCceeE----EEEEEcCCEEEEEeecC
Confidence 99999999999999999976533333333 26666689998888764
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.17 E-value=8.9e-11 Score=76.71 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred hhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 30 HSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 30 ~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
+++ +|++++|.|| ++||++|+.. +|.+.+++++++ ++ .++.|..++ ....++
T Consensus 14 ~~~-~g~~vlV~F~-a~WC~~C~~~-~p~l~~la~~~~--~~-~~~~vd~~~----------------------~~~~l~ 65 (100)
T cd02999 14 AFN-REDYTAVLFY-ASWCPFSASF-RPHFNALSSMFP--QI-RHLAIEESS----------------------IKPSLL 65 (100)
T ss_pred Hhc-CCCEEEEEEE-CCCCHHHHhH-hHHHHHHHHHhc--cC-ceEEEECCC----------------------CCHHHH
Confidence 344 8998888888 9999999998 999999999885 46 677775441 124688
Q ss_pred HHcCCccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
++|++. ++|+ ++++++| .+..+.|
T Consensus 66 ~~~~V~--------~~PT---~~lf~~g-~~~~~~G 89 (100)
T cd02999 66 SRYGVV--------GFPT---ILLFNST-PRVRYNG 89 (100)
T ss_pred HhcCCe--------ecCE---EEEEcCC-ceeEecC
Confidence 999987 5664 8888977 5555543
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.14 E-value=2.2e-10 Score=73.85 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
++++++|.|| ++||+.|+.. .+.+.++++.+.+ .+ .++.|..+ ....++++|+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~-~~-~~~~vd~~-----------------------~~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKEL-LPLLERLAEEYQG-QF-VLAKVNCD-----------------------AQPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhCC-cE-EEEEEecc-----------------------CCHHHHHHcC
Confidence 4678888888 8999999998 9999999988864 35 56666654 2356888999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
+. +.|+ ++++++|+++..+.+.
T Consensus 64 i~--------~~Pt---~~~~~~g~~~~~~~g~ 85 (96)
T cd02956 64 VQ--------ALPT---VYLFAAGQPVDGFQGA 85 (96)
T ss_pred CC--------CCCE---EEEEeCCEEeeeecCC
Confidence 87 5664 8888899988777654
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.12 E-value=5.5e-11 Score=80.53 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=66.2
Q ss_pred CC-CeEEEEEeeCCCCCCCCcCCHhHHH---HhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 34 AG-KKVILFGVPGDFTPTCSLKHVPGFI---EKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 34 ~g-k~vvl~f~~~~~cp~C~~~~~~~l~---~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
.+ |+++|.|| ++||+.|+.. .+.+. .+.+.+++ ++ .++.|+.+.......| . -....+..++
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~-~~~~i~~d~~~~~~~~----~------~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKL-KRDYLNDPAVQAYIRA-HF-VVVYINIDGDKEVTDF----D------GEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHH-HHHhcCcHHHHHHHHh-he-EEEEEEccCCceeecc----C------CCCccHHHHH
Confidence 46 67777776 9999999996 77774 45555553 57 7888887643322221 1 1112457899
Q ss_pred HHcCCccccccCCCCccceeEEEEEc-C-CeEEEEEeecCCcceeCCHHHHHhc
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVD-D-LKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~-~-g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
++|++. ++|+ +++++ + |+++....|.... +.+.++|++
T Consensus 78 ~~~~v~--------~~Pt---~~~~~~~gg~~~~~~~G~~~~---~~~~~~l~~ 117 (125)
T cd02951 78 RKYRVR--------FTPT---VIFLDPEGGKEIARLPGYLPP---DEFLAYLEY 117 (125)
T ss_pred HHcCCc--------cccE---EEEEcCCCCceeEEecCCCCH---HHHHHHHHH
Confidence 999987 5554 88888 7 8999988875443 555555543
No 70
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.11 E-value=3.3e-10 Score=84.02 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=95.9
Q ss_pred CeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC-CCC-eEEEEEcC----CHHHH
Q 038822 12 DGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK-GVD-EILCISVN----DPFVM 85 (162)
Q Consensus 12 ~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~-~~~-~v~~is~d----~~~~~ 85 (162)
+|+|. |.+|+.++-.++ .|||++|+|-.+.|...|+.| +..|....++++++ ++. .-+.|+.| +++..
T Consensus 121 pF~L~----d~~Gk~~te~df-~Gkw~LiYFGFThCPDICPdE-LeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 121 PFSLV----DHDGKRVTEKDF-LGKWSLIYFGFTHCPDICPDE-LEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVV 194 (280)
T ss_pred ceEEE----ecCCCeeccccc-ccceEEEEecccCCCCcChHH-HHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHH
Confidence 89999 999999999998 899999999966544589998 99999999999854 441 12566664 68999
Q ss_pred HHHHHhCCCCC-ceEEEEcCCchHHHHcCCcccc-c---cCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 86 KAWAKTFPKNK-SVKFLADGSAKYTHALGLELDL-S---EKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 86 ~~~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~-~---~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
.+|++++..+. .+.=-.++-.++++.|.|+.+. . +..+-..++-.+|++| +|+.+..+-
T Consensus 195 ~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 195 AEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred HHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 99999997511 2222234447899999999875 1 2234444556789999 999887764
No 71
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.6e-09 Score=71.35 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=87.4
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--------C
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV--------N 80 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~--------d 80 (162)
.+-+|+++ +.+|++++|++| +||.++++- .++-|..-. | ...|+.++++++++|+ .|++.-. .
T Consensus 4 ~~yd~~~~----~~~G~~~~l~~~-~GkVlLIVN-tASkCGfTp-Q-YegLe~Ly~ky~~~Gf-~VLgFPcNQF~~QEPg 74 (162)
T COG0386 4 SIYDFSVK----DIDGEPVSLSDY-KGKVLLIVN-TASKCGFTP-Q-YEGLEALYKKYKDKGF-EVLGFPCNQFGGQEPG 74 (162)
T ss_pred ccccceee----ccCCCCccHHHh-CCcEEEEEE-cccccCCcH-h-HHHHHHHHHHHhhCCc-EEEeccccccccCCCC
Confidence 34578888 889999999998 899554444 488999988 5 7999999999999999 9999855 3
Q ss_pred CHHHHHHHHHhC-CCCCceEEEEcCC--c----hHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCc
Q 038822 81 DPFVMKAWAKTF-PKNKSVKFLADGS--A----KYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGD 149 (162)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~l~D~~--~----~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~ 149 (162)
+.+++++|++.. |. +||+++=-+ + -+.+.+.-.....-.+-.+--.=.=|++| +|+|+..+.....+
T Consensus 75 ~~eEI~~fC~~~YgV--tFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P 149 (162)
T COG0386 75 SDEEIAKFCQLNYGV--TFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKP 149 (162)
T ss_pred CHHHHHHHHHhccCc--eeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCCh
Confidence 578888888754 55 999885322 2 23333221110000000110000157777 99999999876433
No 72
>PRK09381 trxA thioredoxin; Provisional
Probab=99.06 E-value=7.8e-10 Score=73.03 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=63.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| ++|||.|+.. .|.++++++++.+ ++ .+..+..+. ...++++|+
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~-~p~~~~l~~~~~~-~~-~~~~vd~~~-----------------------~~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMI-APILDEIADEYQG-KL-TVAKLNIDQ-----------------------NPGTAPKYG 72 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHhCC-Cc-EEEEEECCC-----------------------ChhHHHhCC
Confidence 3677888888 8899999998 9999999999875 36 777776542 234678888
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
+. ..| +++++++|++++...+... .+++++.++
T Consensus 73 v~--------~~P---t~~~~~~G~~~~~~~G~~~---~~~l~~~i~ 105 (109)
T PRK09381 73 IR--------GIP---TLLLFKNGEVAATKVGALS---KGQLKEFLD 105 (109)
T ss_pred CC--------cCC---EEEEEeCCeEEEEecCCCC---HHHHHHHHH
Confidence 86 455 3777789999998876533 245555554
No 73
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.98 E-value=2.1e-09 Score=70.48 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=57.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC-CeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGV-DEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~-~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
+++.++|.|| ++|||+|+.. .|.++++++++++.+. ..+..+..+. ...+++.|
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~ 68 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKL-EPVWNEVGAELKSSGSPVRVGKLDATA-----------------------YSSIASEF 68 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHHHhcCCcEEEEEEECcc-----------------------CHhHHhhc
Confidence 4566666666 9999999998 9999999999976543 0333444321 24678889
Q ss_pred CCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
++. ++|+ ++++++|. .+.+.+.. +.+++.+.+++
T Consensus 69 ~I~--------~~Pt---~~l~~~~~-~~~~~G~~---~~~~l~~~~~~ 102 (104)
T cd03000 69 GVR--------GYPT---IKLLKGDL-AYNYRGPR---TKDDIVEFANR 102 (104)
T ss_pred CCc--------cccE---EEEEcCCC-ceeecCCC---CHHHHHHHHHh
Confidence 987 5664 77777664 34444332 23555555543
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.98 E-value=2.4e-09 Score=69.70 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=53.4
Q ss_pred hhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 31 SLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 31 ~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
+.++|+ ++|.|| ++||+.|... .|.+.+++++++..++ .+..|..+ .+..+.+
T Consensus 13 ~~~~~~-~lv~f~-a~wC~~C~~~-~p~~~~l~~~~~~~~v-~~~~vd~~-----------------------~~~~~~~ 65 (101)
T cd02994 13 LVLEGE-WMIEFY-APWCPACQQL-QPEWEEFADWSDDLGI-NVAKVDVT-----------------------QEPGLSG 65 (101)
T ss_pred HHhCCC-EEEEEE-CCCCHHHHHH-hHHHHHHHHhhccCCe-EEEEEEcc-----------------------CCHhHHH
Confidence 344666 567777 8999999997 9999999988765556 55555432 2345788
Q ss_pred HcCCccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 111 ALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
+|++. +.|+ ++++.+|++ ..+.|
T Consensus 66 ~~~i~--------~~Pt---~~~~~~g~~-~~~~G 88 (101)
T cd02994 66 RFFVT--------ALPT---IYHAKDGVF-RRYQG 88 (101)
T ss_pred HcCCc--------ccCE---EEEeCCCCE-EEecC
Confidence 89987 5664 666679985 44443
No 75
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.96 E-value=4.6e-09 Score=69.94 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.++++||.|| ++||++|+.- .|.+.++.+++.+. + .++-|..|. ...++++|+
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m-~P~le~la~~~~~~-v-~f~kVDvD~-----------------------~~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQM-DEVLAKIAEDVSNF-A-VIYLVDIDE-----------------------VPDFNKMYE 65 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHccCc-e-EEEEEECCC-----------------------CHHHHHHcC
Confidence 3566777777 9999999996 89999999988643 4 566666652 356899999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESG 147 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~ 147 (162)
+. ++|+ +++..+|+.+....|..
T Consensus 66 V~--------~iPT---f~~fk~G~~v~~~~G~~ 88 (114)
T cd02954 66 LY--------DPPT---VMFFFRNKHMKIDLGTG 88 (114)
T ss_pred CC--------CCCE---EEEEECCEEEEEEcCCC
Confidence 97 5664 88888999999998753
No 76
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.96 E-value=1.8e-10 Score=76.34 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH--hCCCCeEEEEEcCCHH-HHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ--SKGVDEILCISVNDPF-VMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~--~~~~~~v~~is~d~~~-~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
+|+++|++|+ ..|||.|++. .+.+.+..+-.. ..++ .++.+..+... ...++.+..+. +.+ .....++++
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~~ 76 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKL-EKELFPDNDVARYLKDDF-QVIFVNIDDSRDESEAVLDFDGQ--KNV--RLSNKELAQ 76 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHH-HHHHHHHHHHHCEEHCEC-EEEECESHSHHHHHHHHHSHTCH--SSC--HHHHHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHHHHhhcCe-EEEEEecCCcccccccccccccc--hhh--hHHHHHHHH
Confidence 5788888887 8999999985 677765443222 2246 78888876544 34456665442 111 112347999
Q ss_pred HcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 111 ALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
.||+. ++|+ ++++| +|++++...|-.+
T Consensus 77 ~~~v~--------gtPt---~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 77 RYGVN--------GTPT---IVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp HTT----------SSSE---EEECTTTSCEEEEEESS--
T ss_pred HcCCC--------ccCE---EEEEcCCCCEEEEecCCCC
Confidence 99987 6665 88888 9999998876544
No 77
>PRK10996 thioredoxin 2; Provisional
Probab=98.95 E-value=2.3e-09 Score=74.13 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=63.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| ++||+.|+.. .+.+.++++++.+ ++ .++.|..+ .+..++++|+
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~-~~~l~~l~~~~~~-~v-~~~~vd~~-----------------------~~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNF-APIFEDVAAERSG-KV-RFVKVNTE-----------------------AERELSARFR 103 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhCC-Ce-EEEEEeCC-----------------------CCHHHHHhcC
Confidence 3666777777 8999999997 9999999988764 35 66666543 2356889999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
+. ++|+ +++.++|+++....+... .+.+++.|++
T Consensus 104 V~--------~~Pt---lii~~~G~~v~~~~G~~~---~e~l~~~l~~ 137 (139)
T PRK10996 104 IR--------SIPT---IMIFKNGQVVDMLNGAVP---KAPFDSWLNE 137 (139)
T ss_pred CC--------ccCE---EEEEECCEEEEEEcCCCC---HHHHHHHHHH
Confidence 87 5664 666679999988876543 3667777664
No 78
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.91 E-value=8e-09 Score=66.86 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=56.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++++|| ++||+.|... .+.+.++.+++.+ ++ .++.+..+. +.+++++|+
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~-~~~l~~l~~~~~~-~v-~~~~id~d~-----------------------~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTL-KPILNKVIDEFDG-AV-HFVEIDIDE-----------------------DQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHH-HHHHHHHHHHhCC-ce-EEEEEECCC-----------------------CHHHHHHCC
Confidence 3555666666 8999999997 9999999988764 35 566666542 345788888
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGG 148 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~ 148 (162)
+. ++|+ .++.++|+++....+...
T Consensus 65 v~--------~vPt---~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 65 IM--------GTPT---VQFFKDKELVKEISGVKM 88 (97)
T ss_pred Ce--------eccE---EEEEECCeEEEEEeCCcc
Confidence 86 4554 778889999888876543
No 79
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.88 E-value=6e-09 Score=67.62 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=54.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHh--CCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQS--KGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~--~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
.++++|.|| ++||+.|+.. .|.++++++++++ ..+ .++.|..+ .+..++++|
T Consensus 16 ~~~~lv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~~-~~~~vd~~-----------------------~~~~~~~~~ 69 (102)
T cd03005 16 EGNHFVKFF-APWCGHCKRL-APTWEQLAKKFNNENPSV-KIAKVDCT-----------------------QHRELCSEF 69 (102)
T ss_pred cCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhccCCcE-EEEEEECC-----------------------CChhhHhhc
Confidence 345777777 8999999998 9999999999976 235 55555433 234678888
Q ss_pred CCccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
++. ++|+ ++++++|+.+..+.|.
T Consensus 70 ~v~--------~~Pt---~~~~~~g~~~~~~~G~ 92 (102)
T cd03005 70 QVR--------GYPT---LLLFKDGEKVDKYKGT 92 (102)
T ss_pred CCC--------cCCE---EEEEeCCCeeeEeeCC
Confidence 886 5664 7777888877777654
No 80
>PHA02278 thioredoxin-like protein
Probab=98.87 E-value=1.3e-08 Score=66.88 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
+++++||.|| ++||++|+.- .|.+.++.+++. ..+ .++-|..|... . | ...++++|+
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m-~p~l~~l~~~~~-~~~-~~~~vdvd~~~--------------~----d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEIL-KSVIPMFQESGD-IKK-PILTLNLDAED--------------V----D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhH-HHHHHHHHhhhc-CCc-eEEEEECCccc--------------c----c-cHHHHHHCC
Confidence 4677888888 9999999997 899999887643 234 56666665310 0 1 245889999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGG 148 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~ 148 (162)
+. ++|+ +++.++|+++....|...
T Consensus 70 I~--------~iPT---~i~fk~G~~v~~~~G~~~ 93 (103)
T PHA02278 70 IM--------STPV---LIGYKDGQLVKKYEDQVT 93 (103)
T ss_pred Cc--------cccE---EEEEECCEEEEEEeCCCC
Confidence 97 5664 777789999998887533
No 81
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.87 E-value=4.7e-09 Score=68.71 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHH---HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGF---IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l---~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
.+++++|.|| ++||+.|... .+.+ .++.+.+++ ++ .++.|..+.... ....+++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~-~~~~vd~~~~~~-------------------~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVN-EKVVFSDPEVQAALKK-DV-VLLRADWTKNDP-------------------EITALLK 66 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHH-HHHhcCCHHHHHHHhC-Ce-EEEEEecCCCCH-------------------HHHHHHH
Confidence 5777888888 8999999996 7766 567777765 67 777777643110 0145777
Q ss_pred HcCCccccccCCCCccceeEEEEEc--CCeEEEEEeec
Q 038822 111 ALGLELDLSEKGLGTQSRRFALLVD--DLKVKAANVES 146 (162)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~ii~--~g~i~~~~~~~ 146 (162)
+|++. ++|+ +++++ +|++++...+.
T Consensus 67 ~~~i~--------~~Pt---i~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 67 RFGVF--------GPPT---YLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred HcCCC--------CCCE---EEEECCCCCCCCcccccc
Confidence 88886 4554 77777 79988877654
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.86 E-value=1.1e-08 Score=66.54 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCC-CCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG-VDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
++++++|.|| ++||+.|+.. .+.+.++.+.+++.+ + .+..+..+. |....+.+.|
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~~-~~~~id~~~---------------------~~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKM-KPEFTKAATELKEDGKG-VLAAVDCTK---------------------PEHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhhCCce-EEEEEECCC---------------------CccHHHHHhC
Confidence 4567777777 8999999997 999999999987533 3 344444432 1245688889
Q ss_pred CCccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
++. ++|+ .++.++|++++.+.+.
T Consensus 72 ~i~--------~~Pt---~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 72 NVK--------GFPT---FKYFENGKFVEKYEGE 94 (104)
T ss_pred CCc--------cccE---EEEEeCCCeeEEeCCC
Confidence 986 5663 6666699887766543
No 83
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.86 E-value=1.3e-08 Score=65.54 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++++|.|| ++||+.|+.. .+.+.++.+++ ..++ .++.+..+ ....+.++|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~-~~~l~~l~~~~-~~~i-~~~~vd~~-----------------------~~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQM-NQVFEELAKEA-FPSV-LFLSIEAE-----------------------ELPEISEKFEI 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHH-hHHHHHHHHHh-CCce-EEEEEccc-----------------------cCHHHHHhcCC
Confidence 577777777 8999999997 89999999887 2345 55555432 13468888998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
. ++|+ ++++++|+++....+.
T Consensus 67 ~--------~~Pt---~~~~~~g~~~~~~~g~ 87 (97)
T cd02984 67 T--------AVPT---FVFFRNGTIVDRVSGA 87 (97)
T ss_pred c--------cccE---EEEEECCEEEEEEeCC
Confidence 7 5554 7777899998887764
No 84
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.8e-09 Score=70.82 Aligned_cols=86 Identities=9% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.++||+|.|| +.||.+|..- .|.|+++..++.+ .+ .++-|..|+ ..+++.+|+
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l-~P~l~~~~~~~~g-~~-k~~kvdtD~-----------------------~~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKML-GPILEELVSEYAG-KF-KLYKVDTDE-----------------------HPELAEDYE 112 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHh-hHHHHHHHHhhcC-eE-EEEEEcccc-----------------------ccchHhhcc
Confidence 3679999999 9999999997 9999999999853 35 666666553 466899999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
+. ..| +++++++|+.+-...|.... +.+++.++
T Consensus 113 I~--------avP---tvlvfknGe~~d~~vG~~~~---~~l~~~i~ 145 (150)
T KOG0910|consen 113 IS--------AVP---TVLVFKNGEKVDRFVGAVPK---EQLRSLIK 145 (150)
T ss_pred ee--------eee---EEEEEECCEEeeeecccCCH---HHHHHHHH
Confidence 98 455 48999999999888876443 44555444
No 85
>PTZ00051 thioredoxin; Provisional
Probab=98.81 E-value=1.5e-08 Score=65.46 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++++|.|| ++||+.|+.. .+.+.++.+++. ++ .++.|..+ ....+.++|++
T Consensus 18 ~~~vli~f~-~~~C~~C~~~-~~~l~~l~~~~~--~~-~~~~vd~~-----------------------~~~~~~~~~~v 69 (98)
T PTZ00051 18 NELVIVDFY-AEWCGPCKRI-APFYEECSKEYT--KM-VFVKVDVD-----------------------ELSEVAEKENI 69 (98)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHcC--Cc-EEEEEECc-----------------------chHHHHHHCCC
Confidence 566777777 8999999997 899999888653 45 66666543 23568889998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
. ++|+ +++.++|+++....|.
T Consensus 70 ~--------~~Pt---~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 70 T--------SMPT---FKVFKNGSVVDTLLGA 90 (98)
T ss_pred c--------eeeE---EEEEeCCeEEEEEeCC
Confidence 7 5663 6666699999988875
No 86
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.4e-08 Score=65.07 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
++.+|+.|+ ++||++|+.- .|.+.++..++.+ + .++-|..|. ...+++.|++
T Consensus 21 ~kliVvdF~-a~wCgPCk~i-~P~~~~La~~y~~--v-~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAI-APKFEKLAEKYPD--V-VFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEE-CCCCcchhhh-hhHHHHHHHHCCC--C-EEEEEeccc-----------------------CHhHHHhcCc
Confidence 466666665 9999999997 9999999999976 6 788888874 2558889998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
. ++| ++.+.++|+.+-...+... .++++.++
T Consensus 73 ~--------~~P---Tf~f~k~g~~~~~~vGa~~----~~l~~~i~ 103 (106)
T KOG0907|consen 73 K--------AMP---TFVFYKGGEEVDEVVGANK----AELEKKIA 103 (106)
T ss_pred e--------Eee---EEEEEECCEEEEEEecCCH----HHHHHHHH
Confidence 7 455 3777789998888886543 24444443
No 87
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-07 Score=66.47 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=91.0
Q ss_pred CCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC-------
Q 038822 8 DPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN------- 80 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d------- 80 (162)
..+=+|+.+ |.+|+.++|+.| +||.+++.-. ++.|..-..+ -.+|..++++++++|+ .|++.-.+
T Consensus 12 ~siydf~~~----d~~G~~v~l~~y-rGkV~LiVNV-AS~Cg~T~~~-Y~~l~~L~~ky~~~Gl-~ILaFPCNQFg~QEp 83 (171)
T KOG1651|consen 12 GSIYDFSAK----DLDGEYVSLSQY-RGKVVLIVNV-ASQCGLTESQ-YTELNELYEKYKDQGL-EILAFPCNQFGNQEP 83 (171)
T ss_pred cceeeeEEe----cCCCCCccHHHh-CCeEEEEEEc-ccccccchhc-chhHHHHHHHHhhCCe-EEEEeccccccCcCC
Confidence 345588888 899999999998 9996655555 8899999986 8999999999999999 99988542
Q ss_pred -CHHHHHHHH-HhCCCCCceEEEE--cCCc----hHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcce
Q 038822 81 -DPFVMKAWA-KTFPKNKSVKFLA--DGSA----KYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFT 151 (162)
Q Consensus 81 -~~~~~~~~~-~~~~~~~~~~~l~--D~~~----~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~ 151 (162)
+.+++..|. .+++. .|+++. |.+| -+.+-+.-... .-.+..+.--=.=|++| ||+++..+.....+.+
T Consensus 84 ~~n~Ei~~f~~~r~~~--~f~if~KidVNG~~~~PlykfLK~~~~-~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~ 160 (171)
T KOG1651|consen 84 GSNEEILNFVKVRYGA--EFPIFQKIDVNGDNADPLYKFLKKVKG-GPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLD 160 (171)
T ss_pred CCcHHHHHHHHhccCC--CCccEeEEecCCCCCchHHHHHhhcCC-CcccccceeeeEEEeECCCCcEEEeeCCCCCccc
Confidence 345556666 45565 777763 3332 22222211100 00000110000146777 9999999987543323
Q ss_pred -eCCHHHHHh
Q 038822 152 -VSSADDILK 160 (162)
Q Consensus 152 -~~~~~~il~ 160 (162)
..+++.+|.
T Consensus 161 ~~~dIe~lL~ 170 (171)
T KOG1651|consen 161 IEKDIEKLLA 170 (171)
T ss_pred cchhHHHHhc
Confidence 335555554
No 88
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.78 E-value=2.2e-08 Score=65.44 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=55.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| ++||+.|+.. .|.+.++.++++. .+ .+..|..+ .+..+++.|+
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~-~p~~~~~~~~~~~-~~-~~~~vd~~-----------------------~~~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQAL-LPELRKAARALKG-KV-KVGSVDCQ-----------------------KYESLCQQAN 70 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhcC-Cc-EEEEEECC-----------------------chHHHHHHcC
Confidence 3567777777 8999999997 9999999999853 35 66666654 2346788888
Q ss_pred CccccccCCCCccceeEEEEEcCC-eEEEEEeec
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDL-KVKAANVES 146 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g-~i~~~~~~~ 146 (162)
+. ++|+ +++.++| +.++.+.|.
T Consensus 71 i~--------~~Pt---~~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 71 IR--------AYPT---IRLYPGNASKYHSYNGW 93 (104)
T ss_pred CC--------cccE---EEEEcCCCCCceEccCC
Confidence 87 5664 7777855 877777643
No 89
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.78 E-value=2.3e-08 Score=65.04 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| +.||+.|+.. .|.+.++++++++. + .+..|..+. +..++++|+
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~-~p~~~~~a~~~~~~-~-~~~~vd~~~-----------------------~~~~~~~~~ 69 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDL-APTWREFAKEMDGV-I-RIGAVNCGD-----------------------DRMLCRSQG 69 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHh-HHHHHHHHHHhcCc-e-EEEEEeCCc-----------------------cHHHHHHcC
Confidence 4566777777 8999999997 99999999998743 6 677777653 235778888
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
+. ++|+ .++..+|+.+..+.|
T Consensus 70 v~--------~~Pt---~~~~~~g~~~~~~~G 90 (101)
T cd03003 70 VN--------SYPS---LYVFPSGMNPEKYYG 90 (101)
T ss_pred CC--------ccCE---EEEEcCCCCcccCCC
Confidence 86 5664 667778876555443
No 90
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.77 E-value=2e-08 Score=66.07 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.+++++|.|| ++||+.|+.. .+.+.+++++++. .+ .++.|+.+.. .+..+.++|+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~-~~~~~~~a~~~~~-~~-~~~~v~~~~~---------------------~~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNL-KPEYAKAAKELDG-LV-QVAAVDCDED---------------------KNKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHhcC-Cc-eEEEEecCcc---------------------ccHHHHHHcC
Confidence 4667888888 8999999997 8999999998864 36 7888877641 2356888899
Q ss_pred CccccccCCCCccceeEEEEEcCCe
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLK 138 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~ 138 (162)
+. ++|+ ++++++|.
T Consensus 72 i~--------~~Pt---~~~~~~~~ 85 (109)
T cd03002 72 VQ--------GFPT---LKVFRPPK 85 (109)
T ss_pred CC--------cCCE---EEEEeCCC
Confidence 87 5664 78888443
No 91
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.76 E-value=8.2e-08 Score=64.93 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred eeEehhhh---c-CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH--------HHHHHHHHhC
Q 038822 25 QQVSVHSL---A-AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP--------FVMKAWAKTF 92 (162)
Q Consensus 25 ~~~~l~~~---~-~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~--------~~~~~~~~~~ 92 (162)
.+++..++ . .++.++++|+ ++|||+|+.- .|.|.++.++ .+. .++-|..|.. +.+.+|.+++
T Consensus 9 ~~it~~~~~~~i~~~~~~iv~f~-~~~Cp~C~~~-~P~l~~~~~~---~~~-~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 9 EVTTVVRALEALDKKETATFFIG-RKTCPYCRKF-SGTLSGVVAQ---TKA-PIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred eecCHHHHHHHHHcCCcEEEEEE-CCCChhHHHH-hHHHHHHHHh---cCC-cEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 45555443 2 3556677777 8899999997 9999999887 346 7888888731 1233343433
Q ss_pred CCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHH
Q 038822 93 PKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDIL 159 (162)
Q Consensus 93 ~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il 159 (162)
+. . +++. ++| +++++.+|+.+....|... +.+++++++
T Consensus 83 ~i--~--------------~~i~--------~~P---T~v~~k~Gk~v~~~~G~~~--~~~~l~~~~ 120 (122)
T TIGR01295 83 GI--P--------------TSFM--------GTP---TFVHITDGKQVSVRCGSST--TAQELQDIA 120 (122)
T ss_pred CC--c--------------ccCC--------CCC---EEEEEeCCeEEEEEeCCCC--CHHHHHHHh
Confidence 32 0 1222 455 4888889999999886422 235555554
No 92
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.74 E-value=5.6e-08 Score=62.62 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
++.++|.|| +.||+.|+.. .+.++++.+++.+ .+ .++.+..+. +..+.+.|++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~-~~~l~~~~~~~~~-~~-~~~~vd~~~-----------------------~~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMI-APILEELAKEYEG-KV-KFVKLNVDE-----------------------NPDIAAKYGI 66 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHh-CHHHHHHHHHhcC-Ce-EEEEEECCC-----------------------CHHHHHHcCC
Confidence 456777777 8999999997 9999999988863 36 777776542 2456788888
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
. ..|+ .++.++|+++....+... .+++.+.|++
T Consensus 67 ~--------~~P~---~~~~~~g~~~~~~~g~~~---~~~l~~~l~~ 99 (101)
T TIGR01068 67 R--------SIPT---LLLFKNGKEVDRSVGALP---KAALKQLINK 99 (101)
T ss_pred C--------cCCE---EEEEeCCcEeeeecCCCC---HHHHHHHHHh
Confidence 6 4553 777788988877665433 2556665543
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.74 E-value=3.7e-08 Score=63.77 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
++++||.|+ +.||+.|... .|.+.++.+++.+ ++ .++-|..+. +..++++|++
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~-~~~~~~~~~~~~~-~v-~~~~vd~~~-----------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAF-KPILEKLAKEYKD-NV-KFAKVDCDE-----------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHH-HHHHHHHHHHTTT-TS-EEEEEETTT-----------------------SHHHHHHTTC
T ss_pred CCCEEEEEe-CCCCCccccc-cceeccccccccc-cc-ccchhhhhc-----------------------cchhhhccCC
Confidence 577888887 7899999997 9999999999887 67 777776642 2568899998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
. +.|+ .++.++|+....+.+... .+++.+.|+
T Consensus 70 ~--------~~Pt---~~~~~~g~~~~~~~g~~~---~~~l~~~i~ 101 (103)
T PF00085_consen 70 K--------SVPT---IIFFKNGKEVKRYNGPRN---AESLIEFIE 101 (103)
T ss_dssp S--------SSSE---EEEEETTEEEEEEESSSS---HHHHHHHHH
T ss_pred C--------CCCE---EEEEECCcEEEEEECCCC---HHHHHHHHH
Confidence 7 5664 777789998887765533 256666554
No 94
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.74 E-value=4.6e-08 Score=64.56 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=65.9
Q ss_pred CeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC--------CHH
Q 038822 12 DGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN--------DPF 83 (162)
Q Consensus 12 ~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--------~~~ 83 (162)
+|++. +.+|++++|++| +||.++++-. ++-|+.-. + ...|++++++++++|+ .|++.-.+ +.+
T Consensus 3 df~~~----~~~G~~v~l~~y-~Gkv~LIVNv-As~Cg~t~-q-y~~L~~L~~ky~~~gl-~ILaFPcnqFg~QEp~~~~ 73 (108)
T PF00255_consen 3 DFSAK----DIDGKPVSLSKY-KGKVLLIVNV-ASKCGYTK-Q-YKQLNELYEKYKDKGL-EILAFPCNQFGNQEPGSNE 73 (108)
T ss_dssp GSEEE----BTTSSEEEGGGG-TTSEEEEEEE-ESSSTTHH-H-HHHHHHHHHHHGGGTE-EEEEEEBSTTTTTTSSCHH
T ss_pred ceeee----CCCCCEECHHHc-CCCEEEEEec-ccccCCcc-c-cHHHHHHHHHHhcCCe-EEEeeehHHhccccCCCHH
Confidence 57778 899999999998 9997666666 78899888 7 9999999999999999 99998653 567
Q ss_pred HHHHHHHh-CCCCCceEEEE
Q 038822 84 VMKAWAKT-FPKNKSVKFLA 102 (162)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~l~ 102 (162)
++++|.+. ++. +||+..
T Consensus 74 ei~~~~~~~~~~--~F~vf~ 91 (108)
T PF00255_consen 74 EIKEFCKEKFGV--TFPVFE 91 (108)
T ss_dssp HHHHHHCHCHT---SSEEBS
T ss_pred HHHHHHHhccCC--cccceE
Confidence 78888887 465 888764
No 95
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.74 E-value=1e-07 Score=62.82 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=49.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCC-----CCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG-----VDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKY 108 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~-----~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (162)
.+++++|.|| ++||+.|+.. .|.++++++++++.. + .+..|. .|.+..+
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~-~p~~~~~a~~~~~~~~~~~~~-~~~~vd-----------------------~d~~~~l 70 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQML-HPIFEEAAAKIKEEFPDAGKV-VWGKVD-----------------------CDKESDI 70 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhh-HHHHHHHHHHHhhccCCCCcE-EEEEEE-----------------------CCCCHHH
Confidence 3566667776 9999999997 999999998886431 2 222222 3455678
Q ss_pred HHHcCCccccccCCCCccceeEEEEEcCCeEE
Q 038822 109 THALGLELDLSEKGLGTQSRRFALLVDDLKVK 140 (162)
Q Consensus 109 ~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~ 140 (162)
+++|++. ++|+ .++..+|++.
T Consensus 71 ~~~~~v~--------~~Pt---l~~~~~g~~~ 91 (108)
T cd02996 71 ADRYRIN--------KYPT---LKLFRNGMMM 91 (108)
T ss_pred HHhCCCC--------cCCE---EEEEeCCcCc
Confidence 9999997 5664 7777888854
No 96
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.73 E-value=5.3e-08 Score=68.26 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=57.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
+++.+||.|| ++|||+|... .|.+.++.+++.+.++ .++.|..|. ..+++++|+
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l-~p~l~~la~~~~~~~v-~f~~VDvd~-----------------------~~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNF-APVFAELSLKYNNNNL-KFGKIDIGR-----------------------FPNVAEKFR 99 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHcccCCe-EEEEEECCC-----------------------CHHHHHHcC
Confidence 3456777777 8899999997 9999999999876667 788887753 134566666
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
+..... ..++| ++++.++|+.+....+
T Consensus 100 V~~~~~--v~~~P---T~ilf~~Gk~v~r~~G 126 (152)
T cd02962 100 VSTSPL--SKQLP---TIILFQGGKEVARRPY 126 (152)
T ss_pred ceecCC--cCCCC---EEEEEECCEEEEEEec
Confidence 641000 00244 4777789999988886
No 97
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.72 E-value=1.2e-07 Score=63.95 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCeEEEEEeeCCCCCC--CC--cCCHhHHHHhHHHH-HhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 35 GKKVILFGVPGDFTPT--CS--LKHVPGFIEKADEL-QSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~--C~--~~~~~~l~~~~~~~-~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
.+.++|.||++.||++ |+ .- .|.+.++++++ ++.++ .+.-|..| .+.+++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~-~p~~~~~aa~~l~~~~v-~~~kVD~d-----------------------~~~~La 80 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQM-EELVLELAAQVLEDKGI-GFGLVDSK-----------------------KDAKVA 80 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcc-hhhHHHHHHHHhhcCCC-EEEEEeCC-----------------------CCHHHH
Confidence 3446666666899987 99 54 56677777766 34456 66666665 346799
Q ss_pred HHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
++||+. ++|+ .++..||+++. +.|... .+.+.+.|++
T Consensus 81 ~~~~I~--------~iPT---l~lfk~G~~v~-~~G~~~---~~~l~~~l~~ 117 (120)
T cd03065 81 KKLGLD--------EEDS---IYVFKDDEVIE-YDGEFA---ADTLVEFLLD 117 (120)
T ss_pred HHcCCc--------cccE---EEEEECCEEEE-eeCCCC---HHHHHHHHHH
Confidence 999997 6774 77888999876 655433 2555555554
No 98
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.71 E-value=5.8e-08 Score=62.76 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCC-CCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG-VDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
++++++|.|| ++||+.|+.. .+.+.++.+.++..+ + .+..+.. |.+..+.+.|
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~-~~~~~~~~~~~~~~~~~-~~~~~d~-----------------------~~~~~~~~~~ 65 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNL-APEYEKLAKELKGDPDI-VLAKVDA-----------------------TAEKDLASRF 65 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhccCCce-EEEEEEc-----------------------cchHHHHHhC
Confidence 5677788888 8899999997 899999998886543 4 4443333 2235678889
Q ss_pred CCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
++. ++|+ .+++++|...+.+.+... .+++.+.++
T Consensus 66 ~i~--------~~P~---~~~~~~~~~~~~~~g~~~---~~~l~~~i~ 99 (102)
T TIGR01126 66 GVS--------GFPT---IKFFPKGKKPVDYEGGRD---LEAIVEFVN 99 (102)
T ss_pred CCC--------cCCE---EEEecCCCcceeecCCCC---HHHHHHHHH
Confidence 986 4554 888884443555544322 244555544
No 99
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.68 E-value=4e-07 Score=60.75 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=66.7
Q ss_pred HHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccc-------------------
Q 038822 59 FIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLS------------------- 119 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~------------------- 119 (162)
|.+..+++++.|+ .+++|+.++++..++|++..++ +++++.|+++++++++|+.....
T Consensus 2 L~~~~~~l~~~gv-~lv~I~~g~~~~~~~f~~~~~~--p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGV-KLVVIGCGSPEGIEKFCELTGF--PFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSA 78 (115)
T ss_pred hhHhHHHHHHcCC-eEEEEEcCCHHHHHHHHhccCC--CCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHH
Confidence 5677889999999 9999999999889999999998 99999999999999999875210
Q ss_pred -c------C-CCCccceeEEEEEc-CCeEEEEEee
Q 038822 120 -E------K-GLGTQSRRFALLVD-DLKVKAANVE 145 (162)
Q Consensus 120 -~------~-~~~~~~~~~~~ii~-~g~i~~~~~~ 145 (162)
. . .........+||++ +|+|+|.|+.
T Consensus 79 ~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 79 KNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 0 0 00111233489998 8999999974
No 100
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.67 E-value=7.8e-08 Score=63.59 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=37.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
.+++++|.|| ++|||.|+.. .+.+.++++.+++.++ .+..|..+.
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~la~~~~~~~~-~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAM-EASYEELAEKLAGSNV-KVAKFNADG 64 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHH-hHHHHHHHHHhccCCe-EEEEEECCc
Confidence 4677777777 8999999997 9999999999986667 777777664
No 101
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.66 E-value=2.5e-07 Score=58.02 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++++|+|| +.||+.|... .+.++++.++ ..++ .++.+..+. +..+.+.|++
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~-~~~~~~~~~~--~~~~-~~~~i~~~~-----------------------~~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAI-APVLEELAEE--YPKV-KFVKVDVDE-----------------------NPELAEEYGV 61 (93)
T ss_pred CCcEEEEEE-CCCChhHHHh-hHHHHHHHHH--CCCc-eEEEEECCC-----------------------ChhHHHhcCc
Confidence 366677776 8899999997 8999888877 4566 777777653 3556778887
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeecCC
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVESGG 148 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~ 148 (162)
. +.| +.++.++|+++..+.+...
T Consensus 62 ~--------~~P---~~~~~~~g~~~~~~~g~~~ 84 (93)
T cd02947 62 R--------SIP---TFLFFKNGKEVDRVVGADP 84 (93)
T ss_pred c--------ccc---EEEEEECCEEEEEEecCCC
Confidence 6 455 3777779998888876433
No 102
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.62 E-value=1.3e-07 Score=63.61 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCCeEEEEEeeC-------CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCc
Q 038822 34 AGKKVILFGVPG-------DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSA 106 (162)
Q Consensus 34 ~gk~vvl~f~~~-------~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
+|++++|.|| + +|||+|+.. .|.+.++.+++++ ++ .++-|..+.. +...|++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~~-~v-~fv~Vdvd~~----------------~~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKA-EPVVREALKAAPE-DC-VFIYCDVGDR----------------PYWRDPNN 79 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhh-chhHHHHHHHCCC-CC-EEEEEEcCCc----------------ccccCcch
Confidence 4788999988 6 999999997 9999999998863 46 7888887642 23344556
Q ss_pred hHHHHcCCccccccCCCCccceeEEEEEcC
Q 038822 107 KYTHALGLELDLSEKGLGTQSRRFALLVDD 136 (162)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~ 136 (162)
.+.+.|++. . ++|+ +++.++
T Consensus 80 ~~~~~~~I~-~------~iPT---~~~~~~ 99 (119)
T cd02952 80 PFRTDPKLT-T------GVPT---LLRWKT 99 (119)
T ss_pred hhHhccCcc-c------CCCE---EEEEcC
Confidence 777777774 1 3553 666663
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.61 E-value=3.4e-07 Score=60.66 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCeEEEEEeeCCC--CCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHH
Q 038822 34 AGKKVILFGVPGDF--TPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHA 111 (162)
Q Consensus 34 ~gk~vvl~f~~~~~--cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 111 (162)
.|+++||.|+ +.| ||.|..- .|.|.++.+++.+. + .++-|..| .+..++..
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i-~P~leela~e~~~~-v-~f~kVdid-----------------------~~~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDV-AVVLPELLKAFPGR-F-RAAVVGRA-----------------------DEQALAAR 78 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhh-HhHHHHHHHHCCCc-E-EEEEEECC-----------------------CCHHHHHH
Confidence 4666777777 776 9999997 99999999988643 3 44444444 34578999
Q ss_pred cCCccccccCCCCccceeEEEEEcCCeEEEEEeecC
Q 038822 112 LGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESG 147 (162)
Q Consensus 112 ~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~ 147 (162)
|++. ++|+ .++..+|+++....|..
T Consensus 79 f~V~--------sIPT---li~fkdGk~v~~~~G~~ 103 (111)
T cd02965 79 FGVL--------RTPA---LLFFRDGRYVGVLAGIR 103 (111)
T ss_pred cCCC--------cCCE---EEEEECCEEEEEEeCcc
Confidence 9998 6664 77778999999988653
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.60 E-value=2.6e-07 Score=61.47 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
++++||.|| +.||+.|+.- .|.+.++++++. ++ .++-|..+. . .+++.|++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l-~~~l~~la~~~~--~v-~f~~vd~~~-----------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKIL-DSHLEELAAKYP--ET-KFVKINAEK-----------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHH-HHHHHHHHHHCC--Cc-EEEEEEchh-----------------------h-HHHHhcCC
Confidence 367778787 8999999997 899999998874 45 555444431 2 56788888
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
. ++|+ .++..+|+++....+.
T Consensus 75 ~--------~~Pt---~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 75 K--------VLPT---LLVYKNGELIDNIVGF 95 (113)
T ss_pred C--------cCCE---EEEEECCEEEEEEecH
Confidence 6 4563 7777899999988874
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.60 E-value=2.6e-07 Score=61.28 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
++|.+||.|+ ++|||+|+.- -|.|.++++++++. + .++-|..|. ...+++.|+
T Consensus 13 ~~klVVVdF~-a~WC~pCk~m-dp~l~ela~~~~~~-~-~f~kVDVDe-----------------------v~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQL-DDILSKTSHDLSKM-A-SIYLVDVDK-----------------------VPVYTQYFD 65 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHH-HHHHHHHHHHccCc-e-EEEEEeccc-----------------------cHHHHHhcC
Confidence 4677777777 8999999996 79999999998543 6 677777763 245778888
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecC
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESG 147 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~ 147 (162)
+. ..|+ ++++.+|+=..+..|.+
T Consensus 66 I~--------amPt---fvffkngkh~~~d~gt~ 88 (114)
T cd02986 66 IS--------YIPS---TIFFFNGQHMKVDYGSP 88 (114)
T ss_pred ce--------eCcE---EEEEECCcEEEEecCCC
Confidence 76 3453 66777888888887753
No 106
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.58 E-value=3.8e-07 Score=60.81 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=55.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.++++||.|| +.||+.|+.- .|.+.++.+++. ++ .++-|..+. ...++++|+
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~-~p~l~~la~~~~--~i-~f~~Vd~~~-----------------------~~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIM-DKHLEILAKKHL--ET-KFIKVNAEK-----------------------APFLVEKLN 72 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHH-HHHHHHHHHHcC--CC-EEEEEEccc-----------------------CHHHHHHCC
Confidence 3567777777 8999999997 899999988764 46 666665542 345889999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
+. ..|+ .++..+|+++....+.
T Consensus 73 v~--------~vPt---~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 73 IK--------VLPT---VILFKNGKTVDRIVGF 94 (113)
T ss_pred Cc--------cCCE---EEEEECCEEEEEEECc
Confidence 87 4563 7777899999887763
No 107
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.57 E-value=3.7e-07 Score=60.91 Aligned_cols=73 Identities=8% Similarity=-0.051 Sum_probs=50.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH-HHc
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT-HAL 112 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~ 112 (162)
.++.++|.|| ++||+.|+.- .|.+.++++++++. + .+..|..+. +..++ ++|
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l-~p~~~~la~~~~~~-v-~~~~Vd~d~-----------------------~~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAA-RQEFEQVAQKLSDQ-V-LFVAINCWW-----------------------PQGKCRKQK 80 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHhcCC-e-EEEEEECCC-----------------------ChHHHHHhc
Confidence 4566666666 9999999996 99999999998643 5 566666542 23455 578
Q ss_pred CCccccccCCCCccceeEEEEEcCCeEEEEEe
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLKVKAANV 144 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~ 144 (162)
++. +.|+ ..+..+|+....+.
T Consensus 81 ~I~--------~~PT---l~lf~~g~~~~~y~ 101 (113)
T cd03006 81 HFF--------YFPV---IHLYYRSRGPIEYK 101 (113)
T ss_pred CCc--------ccCE---EEEEECCccceEEe
Confidence 876 5664 55556777654444
No 108
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.56 E-value=3.2e-07 Score=63.42 Aligned_cols=76 Identities=9% Similarity=0.136 Sum_probs=54.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.++++||.|| ++||++|+.- .|.|.++.+++++. + .|+-|.+|. ...+++.|+
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m-~p~l~~la~~~~~~-~-~~~kVDVDe-----------------------~~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQM-DEVLASVAETIKNF-A-VIYLVDITE-----------------------VPDFNTMYE 74 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHcCCc-e-EEEEEECCC-----------------------CHHHHHHcC
Confidence 4667777777 8999999996 89999999988543 4 556666652 356888888
Q ss_pred CccccccCCCCccceeEEEEEcCCe-EEEEEeec
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLK-VKAANVES 146 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~-i~~~~~~~ 146 (162)
+. +.|+ .+++.++|+ .+....|.
T Consensus 75 I~--------~~~t--~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 75 LY--------DPCT--VMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred cc--------CCCc--EEEEEECCeEEEEEeccc
Confidence 86 2332 344778887 66666553
No 109
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.54 E-value=4.6e-07 Score=60.40 Aligned_cols=85 Identities=7% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
++.++++|+ ++|||+|+.- .+.+.++.+++ ..+ .+..|..|. +..+++.|++
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~-~~~l~~la~~~--~~i-~~~~vd~d~-----------------------~~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVT-KQLLEELSELS--DKL-KLEIYDFDE-----------------------DKEKAEKYGV 73 (113)
T ss_pred CeEEEEEeC-CCCCCChHHH-HHHHHHHHHhc--Cce-EEEEEeCCc-----------------------CHHHHHHcCC
Confidence 344555544 8999999996 78888888765 235 666666552 2468889998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEE--EEeecCCcceeCCHHHHHhc
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKA--ANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~--~~~~~~~~~~~~~~~~il~~ 161 (162)
. +.|+ +++.++|.... .+.|..+. .++.++++.
T Consensus 74 ~--------~vPt---~~i~~~g~~~~~~~~~G~~~~---~el~~~i~~ 108 (113)
T cd02975 74 E--------RVPT---TIFLQDGGKDGGIRYYGLPAG---YEFASLIED 108 (113)
T ss_pred C--------cCCE---EEEEeCCeecceEEEEecCch---HHHHHHHHH
Confidence 7 4553 77766432222 34444332 555555543
No 110
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.54 E-value=2.2e-07 Score=69.07 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=53.2
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++++|.|| ++||+.|+.. .|.++++++++++ .+ .+..|..+ .+..++++|++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~-~P~~e~la~~~~~-~v-~~~~VD~~-----------------------~~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKM-APAWERLAKALKG-QV-NVADLDAT-----------------------RALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEE-CCCChHHHHH-HHHHHHHHHHcCC-Ce-EEEEecCc-----------------------ccHHHHHHcCC
Confidence 467778887 8999999997 9999999988863 24 44433332 23468899998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
. ++|+ ++++++|+++....+
T Consensus 105 ~--------~~PT---l~~f~~G~~v~~~~G 124 (224)
T PTZ00443 105 K--------GYPT---LLLFDKGKMYQYEGG 124 (224)
T ss_pred C--------cCCE---EEEEECCEEEEeeCC
Confidence 7 5665 888889987765543
No 111
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.52 E-value=2.3e-07 Score=60.22 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=51.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHh-CCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQS-KGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~-~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
++++++.|| ++||+.|+.. .+.+.++.++++. .++ .++.+..+.+ ...+.++|+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~-~~~~~~~~~~~~~~~~~-~~~~id~~~~----------------------~~~~~~~~~ 72 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNL-APEYEKLAAVFANEDDV-VIAKVDADEA----------------------NKDLAKKYG 72 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhCCCCCE-EEEEEECCCc----------------------chhhHHhCC
Confidence 557777777 8999999997 8999999999873 334 4555554331 356788888
Q ss_pred CccccccCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 114 LELDLSEKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
+. +.|+ +++.+ +|+....+.
T Consensus 73 i~--------~~P~---~~~~~~~~~~~~~~~ 93 (105)
T cd02998 73 VS--------GFPT---LKFFPKGSTEPVKYE 93 (105)
T ss_pred CC--------CcCE---EEEEeCCCCCccccC
Confidence 86 4554 77777 555554443
No 112
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.49 E-value=1.6e-07 Score=63.07 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
++|+++|.|| ++||++|+.. .+.+.+...... .+. .++.|..+
T Consensus 18 ~~kpVlV~F~-a~WC~~C~~~-~~~~~~~~~~~~-~~~-~fv~v~vd 60 (117)
T cd02959 18 SGKPLMLLIH-KTWCGACKAL-KPKFAESKEISE-LSH-NFVMVNLE 60 (117)
T ss_pred cCCcEEEEEe-CCcCHHHHHH-HHHHhhhHHHHh-hcC-cEEEEEec
Confidence 5788888888 8999999997 888888665543 334 56666655
No 113
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.1e-06 Score=62.54 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=101.7
Q ss_pred CCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEE
Q 038822 21 QDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKF 100 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~ 100 (162)
+..|+.+.+.++++.+..|+.|.+-.-|-.|+++ ...|.++.+-+++.|+ .+++|...+......|..+-.+ .-.+
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~-aadLa~l~~~ld~~Gv-~Li~vg~g~~~~~~~f~~q~~f--~gev 111 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREE-AADLASLKDLLDELGV-VLIAVGPGSHVQFEDFWDQTYF--SGEV 111 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHH-HHHHHHHHHHHHHhCC-EEEEEeccceeecchhhcccCc--ceeE
Confidence 4679999999998888999999999999999998 9999999888889999 8999988777778888887777 5689
Q ss_pred EEcCCchHHHHcCCccc-cc-------------------c--CCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHH
Q 038822 101 LADGSAKYTHALGLELD-LS-------------------E--KGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADD 157 (162)
Q Consensus 101 l~D~~~~~~~~~gv~~~-~~-------------------~--~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~ 157 (162)
+.|++..++..++.... +. . .+-+..+ ...+++- .|+|.+.+...+.. |-..++.
T Consensus 112 ylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~-gG~~~V~~G~~il~~h~dk~~g-D~~~i~~ 189 (197)
T KOG4498|consen 112 YLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLS-GGVLVVGRGKKILFIHVDKETG-DHVPIDS 189 (197)
T ss_pred EEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHh-CCeEEEecCCeEEEEEecCCCC-CCcCHHH
Confidence 99999888777665431 00 0 0111111 2255555 66999999986332 3457777
Q ss_pred HHhc
Q 038822 158 ILKS 161 (162)
Q Consensus 158 il~~ 161 (162)
+++.
T Consensus 190 Vl~v 193 (197)
T KOG4498|consen 190 VLQV 193 (197)
T ss_pred HHHH
Confidence 7764
No 114
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.43 E-value=1.8e-06 Score=63.92 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=63.0
Q ss_pred EehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCc
Q 038822 27 VSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSA 106 (162)
Q Consensus 27 ~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
-.|.++ .+++-+++|+.+ .||.|..+ .|.++.+.+++ |+ .|+.||.|..- + ..||-.. .+.
T Consensus 113 ~~l~~l-a~~~gL~~F~~~-~C~~C~~~-~pil~~~~~~y---g~-~v~~vs~DG~~----------~-~~fp~~~-~~~ 173 (215)
T PF13728_consen 113 KALKQL-AQKYGLFFFYRS-DCPYCQQQ-APILQQFADKY---GF-SVIPVSLDGRP----------I-PSFPNPR-PDP 173 (215)
T ss_pred HHHHHH-hhCeEEEEEEcC-CCchhHHH-HHHHHHHHHHh---CC-EEEEEecCCCC----------C-cCCCCCC-CCH
Confidence 345665 678888888866 59999998 99999999886 88 99999998411 0 1222111 156
Q ss_pred hHHHHcCCccccccCCCCccceeEEEEEc-CC-eEEEEEeec
Q 038822 107 KYTHALGLELDLSEKGLGTQSRRFALLVD-DL-KVKAANVES 146 (162)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g-~i~~~~~~~ 146 (162)
.+++.+|+. .+ |++|+++ ++ ++.-+-.|.
T Consensus 174 g~~~~l~v~--------~~---Pal~Lv~~~~~~~~pv~~G~ 204 (215)
T PF13728_consen 174 GQAKRLGVK--------VT---PALFLVNPNTKKWYPVSQGF 204 (215)
T ss_pred HHHHHcCCC--------cC---CEEEEEECCCCeEEEEeeec
Confidence 688899986 23 4588888 55 666666544
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.40 E-value=1.5e-06 Score=62.43 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=62.1
Q ss_pred CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 36 KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 36 k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+++||.|| ++||+.|..- .+.|..++.++. ++ .++-|..+. . .++..|++.
T Consensus 84 ~~VVV~Fy-a~wc~~Ck~m-~~~l~~LA~~~~--~v-kF~kVd~d~-----------------------~-~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIY-EPGIPGCAAL-NSSLLCLAAEYP--AV-KFCKIRASA-----------------------T-GASDEFDTD 134 (175)
T ss_pred cEEEEEEE-CCCCchHHHH-HHHHHHHHHHCC--Ce-EEEEEeccc-----------------------h-hhHHhCCCC
Confidence 36777777 8999999996 889999998874 46 666666542 1 367778886
Q ss_pred cccccCCCCccceeEEEEEcCCeEEEEEeec----CCcceeCCHHHHHhc
Q 038822 116 LDLSEKGLGTQSRRFALLVDDLKVKAANVES----GGDFTVSSADDILKS 161 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~----~~~~~~~~~~~il~~ 161 (162)
++|+ .++..+|+++....+. +..+....++.+|.+
T Consensus 135 --------~vPT---lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 --------ALPA---LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred --------CCCE---EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 4664 7777899999988863 345556677776653
No 116
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.40 E-value=2.1e-06 Score=53.37 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=28.3
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+..|.++|||.|... .+.+.+++++++. .+ .++-|..+
T Consensus 3 v~~f~~~~C~~C~~~-~~~l~~l~~~~~~-~~-~~~~vd~~ 40 (82)
T TIGR00411 3 IELFTSPTCPYCPAA-KRVVEEVAKEMGD-AV-EVEYINVM 40 (82)
T ss_pred EEEEECCCCcchHHH-HHHHHHHHHHhcC-ce-EEEEEeCc
Confidence 444448999999997 9999999988853 35 66666553
No 117
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.39 E-value=2.1e-06 Score=55.56 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=48.1
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++++|.|| ++||+.|+.. .+.+.++++++.. .+ .+..+..+ .+..+.++|++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~-~~~~~~~~~~~~~-~~-~~~~id~~-----------------------~~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNL-APEWKKAAKALKG-IV-KVGAVDAD-----------------------VHQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHH-hHHHHHHHHHhcC-Cc-eEEEEECc-----------------------chHHHHHHCCC
Confidence 445777777 8999999997 8999999988864 35 66666543 23567788888
Q ss_pred ccccccCCCCccceeEEEEEcCCe
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLK 138 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~ 138 (162)
. +.|+ .+++++|+
T Consensus 71 ~--------~~P~---~~~~~~~~ 83 (103)
T cd03001 71 R--------GFPT---IKVFGAGK 83 (103)
T ss_pred C--------ccCE---EEEECCCC
Confidence 6 4554 77888663
No 118
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.39 E-value=2.8e-06 Score=57.58 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=52.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhH-HH--HhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPG-FI--EKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~-l~--~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
.+|+++|.|+ ++||+.|+.- -+. +. +..+.+. +++ .++-+..+. ++..+.+.+ ...
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~m-e~~~f~~~~V~~~l~-~~f-v~VkvD~~~~~~~~~~~~~----------------~~~ 73 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVM-EHESFEDEEVAAILN-ENF-VPIKVDREERPDVDKIYMN----------------AAQ 73 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHH-HHHccCCHHHHHHHh-CCE-EEEEEeCCcCcHHHHHHHH----------------HHH
Confidence 5777777766 9999999983 331 22 3333332 334 444444332 111111111 112
Q ss_pred HHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeec--CCcceeCCHHHHHhc
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVES--GGDFTVSSADDILKS 161 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~--~~~~~~~~~~~il~~ 161 (162)
..||+. |.|+ +++++ +|++++...+- ..+........+|+.
T Consensus 74 ~~~~~~--------G~Pt---~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 74 AMTGQG--------GWPL---NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred HhcCCC--------CCCE---EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 244554 5554 88888 99999988764 222334556655543
No 119
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=3.7e-06 Score=61.29 Aligned_cols=92 Identities=12% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCceeEehhhhcCCCe-EEEEEe-----eCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 21 QDQLQQVSVHSLAAGKK-VILFGV-----PGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~-vvl~f~-----~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
+....+.+|++++.|+- +||+-| +..-||.|..- +..+......++..++ .+++||..+.+++..+.++.|+
T Consensus 58 e~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~l-aD~~dGa~~HL~~~dv-~lv~VsRAPl~~l~~~k~rmGW 135 (247)
T COG4312 58 ETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFL-ADHWDGAVAHLEHHDV-TLVAVSRAPLEELVAYKRRMGW 135 (247)
T ss_pred ecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhH-HhhhhhhhhhHhhcCc-eEEEEecCcHHHHHHHHHhcCC
Confidence 34556899999988874 333322 23469999997 8899999999998999 9999999999999999999999
Q ss_pred CCceEEEEcCCchHHHHcCCcc
Q 038822 95 NKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 95 ~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
+|+.+|+.++.+.++|++..
T Consensus 136 --~f~w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 136 --QFPWVSSTDSDFNRDFQVSF 155 (247)
T ss_pred --cceeEeccCccccccccccc
Confidence 89999999999999997754
No 120
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.37 E-value=8.1e-07 Score=56.73 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH-hCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ-SKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~-~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
++++++|.|| +.||+.|+.. .+.+.++.+.++ ..++ .++.+..+. +..+.+.|
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~-~~~~v~~~~-----------------------~~~~~~~~ 67 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKAL-APEYEKLAKELKGDGKV-VVAKVDCTA-----------------------NNDLCSEY 67 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhh-hHHHHHHHHHhccCCce-EEEEeeccc-----------------------hHHHHHhC
Confidence 3446777777 8899999997 999999988885 3345 555554322 35678888
Q ss_pred CCccccccCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 113 GLELDLSEKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
++. +.|+ .++++ +|+....+.
T Consensus 68 ~i~--------~~Pt---~~~~~~~~~~~~~~~ 89 (101)
T cd02961 68 GVR--------GYPT---IKLFPNGSKEPVKYE 89 (101)
T ss_pred CCC--------CCCE---EEEEcCCCcccccCC
Confidence 886 4554 88888 544444443
No 121
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=7.5e-07 Score=67.91 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
+.+||++.|| +.||++|..- .|.|.++..+++.+ + .+.-|+.| .+..++..||
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL-~p~Lekla~~~~G~-f-~LakvN~D-----------------------~~p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQL-TPTLEKLAAEYKGK-F-KLAKVNCD-----------------------AEPMVAAQFG 94 (304)
T ss_pred cCCCeEEEec-CCCCchHHHH-HHHHHHHHHHhCCc-e-EEEEecCC-----------------------cchhHHHHhC
Confidence 5679999999 8999999997 99999999998643 3 33334444 3467899999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
+. .+|+ +|.+.||+-+.-+.|..++ +.+.++|+.
T Consensus 95 iq--------sIPt---V~af~dGqpVdgF~G~qPe---sqlr~~ld~ 128 (304)
T COG3118 95 VQ--------SIPT---VYAFKDGQPVDGFQGAQPE---SQLRQFLDK 128 (304)
T ss_pred cC--------cCCe---EEEeeCCcCccccCCCCcH---HHHHHHHHH
Confidence 98 4664 8888999999999876553 666666654
No 122
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.34 E-value=2.2e-06 Score=57.13 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC-C-CCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHc
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK-G-VDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHAL 112 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~-~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (162)
+++++|.|| ++||+.|+.. .+.+.++++++++. + + .+..+..+. |.+..+.+.|
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~-~~~~~~la~~~~~~~~~v-~~~~vd~~~---------------------~~~~~~~~~~ 74 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAF-APTWKKLARDLRKWRPVV-RVAAVDCAD---------------------EENVALCRDF 74 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHHHhcCCce-EEEEEeccc---------------------hhhHHHHHhC
Confidence 457777777 8999999997 99999999988753 2 3 333333221 2234577788
Q ss_pred CCccccccCCCCccceeEEEEEcCCe
Q 038822 113 GLELDLSEKGLGTQSRRFALLVDDLK 138 (162)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~ii~~g~ 138 (162)
++. ++|+ ++++++|+
T Consensus 75 ~i~--------~~Pt---~~lf~~~~ 89 (114)
T cd02992 75 GVT--------GYPT---LRYFPPFS 89 (114)
T ss_pred CCC--------CCCE---EEEECCCC
Confidence 876 4554 77778665
No 123
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.33 E-value=7.8e-07 Score=74.65 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=57.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHH---HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGF---IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l---~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
+||+++|.|| ++||+.|+.. .+.. .+..++++ ++ .++-+..+..+ +.+.++.+
T Consensus 473 ~gK~VlVdF~-A~WC~~Ck~~-e~~~~~~~~v~~~l~--~~-~~v~vDvt~~~-------------------~~~~~l~~ 528 (571)
T PRK00293 473 KGKPVMLDLY-ADWCVACKEF-EKYTFSDPQVQQALA--DT-VLLQADVTANN-------------------AEDVALLK 528 (571)
T ss_pred cCCcEEEEEE-CCcCHhHHHH-HHHhcCCHHHHHHhc--CC-EEEEEECCCCC-------------------hhhHHHHH
Confidence 4788888888 9999999984 4443 34555553 46 66666654311 12356788
Q ss_pred HcCCccccccCCCCccceeEEEEEc-CCeEE--EEEeecCCcceeCCHHHHHhc
Q 038822 111 ALGLELDLSEKGLGTQSRRFALLVD-DLKVK--AANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~--~~~~~~~~~~~~~~~~~il~~ 161 (162)
+|++. +.|+ ++++| ||+++ ....+... .++..+.|++
T Consensus 529 ~~~v~--------g~Pt---~~~~~~~G~~i~~~r~~G~~~---~~~f~~~L~~ 568 (571)
T PRK00293 529 HYNVL--------GLPT---ILFFDAQGQEIPDARVTGFMD---AAAFAAHLRQ 568 (571)
T ss_pred HcCCC--------CCCE---EEEECCCCCCcccccccCCCC---HHHHHHHHHH
Confidence 89887 5664 88888 99985 44444322 3555665554
No 124
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.29 E-value=3.7e-06 Score=63.31 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=63.9
Q ss_pred ehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCch
Q 038822 28 SVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAK 107 (162)
Q Consensus 28 ~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~ 107 (162)
.+.++ .+++-+++||+++ ||.|... .|.++.+.+++ |+ .|++||.|..- ...||-. =++..
T Consensus 137 ~i~~l-a~~~GL~fFy~s~-Cp~C~~~-aPil~~fa~~y---g~-~v~~VS~DG~~-----------~p~fp~~-~~d~g 197 (248)
T PRK13703 137 AIAKL-AEHYGLMFFYRGQ-DPIDGQL-AQVINDFRDTY---GL-SVIPVSVDGVI-----------NPLLPDS-RTDQG 197 (248)
T ss_pred HHHHH-HhcceEEEEECCC-CchhHHH-HHHHHHHHHHh---CC-eEEEEecCCCC-----------CCCCCCC-ccChh
Confidence 46665 6788999999765 9999998 99999999875 78 99999998521 1123321 13444
Q ss_pred HHHHcCCccccccCCCCccceeEEEEEc--CCeEEEEEeecCC
Q 038822 108 YTHALGLELDLSEKGLGTQSRRFALLVD--DLKVKAANVESGG 148 (162)
Q Consensus 108 ~~~~~gv~~~~~~~~~~~~~~~~~~ii~--~g~i~~~~~~~~~ 148 (162)
.++++|+. .+ |++|+++ .+++.-+-+|..+
T Consensus 198 qa~~l~v~--------~~---PAl~Lv~~~t~~~~pv~~G~iS 229 (248)
T PRK13703 198 QAQRLGVK--------YF---PALMLVDPKSGSVRPLSYGFIT 229 (248)
T ss_pred HHHhcCCc--------cc---ceEEEEECCCCcEEEEeeccCC
Confidence 55788886 23 4588888 4677777776533
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.28 E-value=4.8e-06 Score=61.60 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=54.3
Q ss_pred CCCeEEEEEee--CCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHH
Q 038822 34 AGKKVILFGVP--GDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHA 111 (162)
Q Consensus 34 ~gk~vvl~f~~--~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 111 (162)
++...++.|+. +.|||+|..- .|.+.++.+++. ++ ++..+..|. |.+.++++.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~-~p~l~~la~~~~--~~-~i~~v~vd~---------------------~~~~~l~~~ 72 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKET-EQLLEELSEVSP--KL-KLEIYDFDT---------------------PEDKEEAEK 72 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHH-HHHHHHHHhhCC--Cc-eEEEEecCC---------------------cccHHHHHH
Confidence 44445555663 3999999997 899999988873 35 555555553 124679999
Q ss_pred cCCccccccCCCCccceeEEEEEcCCeEEE-EEeecCC
Q 038822 112 LGLELDLSEKGLGTQSRRFALLVDDLKVKA-ANVESGG 148 (162)
Q Consensus 112 ~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~-~~~~~~~ 148 (162)
|++. +.|+ .+++++|+.+. .+.|..+
T Consensus 73 ~~V~--------~~Pt---~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 73 YGVE--------RVPT---TIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred cCCC--------ccCE---EEEEeCCeeeEEEEeecCC
Confidence 9997 5664 67778888764 6666533
No 126
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.28 E-value=4.7e-06 Score=53.93 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHh-CCCCeEEEEEcC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQS-KGVDEILCISVN 80 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~-~~~~~v~~is~d 80 (162)
++.++|.|| ++||+.|+.. .+.+.++.+.+++ ..+ .+..+..+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~-~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKAL-APIYEELAEKLKGDDNV-VIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHH-hhHHHHHHHHhcCCCCE-EEEEEeCc
Confidence 567777777 8999999997 9999999999875 234 44445443
No 127
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.27 E-value=4.5e-06 Score=63.13 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=64.8
Q ss_pred EehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCc
Q 038822 27 VSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSA 106 (162)
Q Consensus 27 ~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
-.+.++ ++++-+++||+++ ||.|... .|.++.+.+++ |+ .|++||.|..- ...||-.. ++.
T Consensus 143 ~~i~~l-a~~~gL~fFy~~~-C~~C~~~-apil~~fa~~y---gi-~v~~VS~DG~~-----------~p~fp~~~-~d~ 203 (256)
T TIGR02739 143 KAIQQL-SQSYGLFFFYRGK-SPISQKM-APVIQAFAKEY---GI-SVIPISVDGTL-----------IPGLPNSR-SDS 203 (256)
T ss_pred HHHHHH-HhceeEEEEECCC-CchhHHH-HHHHHHHHHHh---CC-eEEEEecCCCC-----------CCCCCCcc-CCh
Confidence 346665 6788999999765 9999998 99999999875 78 99999998521 11333222 256
Q ss_pred hHHHHcCCccccccCCCCccceeEEEEEc-C-CeEEEEEeecCC
Q 038822 107 KYTHALGLELDLSEKGLGTQSRRFALLVD-D-LKVKAANVESGG 148 (162)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~-g~i~~~~~~~~~ 148 (162)
..++.+|+. .+ |++|+++ + +++.-+-+|..+
T Consensus 204 gqa~~l~v~--------~~---Pal~Lv~~~t~~~~pv~~G~iS 236 (256)
T TIGR02739 204 GQAQHLGVK--------YF---PALYLVNPKSQKMSPLAYGFIS 236 (256)
T ss_pred HHHHhcCCc--------cC---ceEEEEECCCCcEEEEeeccCC
Confidence 678899986 23 4588888 5 666666665433
No 128
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.23 E-value=4.6e-06 Score=68.07 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
++++++|.|| +.||++|+.. .|.+.++++++++.++ .++.|..|.
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m-~P~~eelA~~~~~~~v-~~~kVdvD~ 414 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAM-EASYLELAEKLAGSGV-KVAKFRADG 414 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCc-EEEEEECCC
Confidence 4667777777 9999999997 9999999999987677 787787763
No 129
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.20 E-value=6.9e-06 Score=59.78 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+++|||.|| ++||+.|+.- -+.|.+++.++. .+ .++-|..+. ....|++
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m-~~~l~~LA~k~~--~v-kFvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLL-NQHLSELARKFP--DT-KFVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCEEEEEEE-CCCCchHHHH-HHHHHHHHHHCC--CC-EEEEEEhHH--------------------------hHhhCCC
Confidence 347888887 8999999996 899999999984 46 677666542 1256776
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeec----CCcceeCCHHHHHhc
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVES----GGDFTVSSADDILKS 161 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~----~~~~~~~~~~~il~~ 161 (162)
. ++|+ .++..+|+++...++. +..++..+++..|.+
T Consensus 151 ~--------~lPT---lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 K--------NLPT---ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred C--------CCCE---EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 6 4663 7777899999999874 335556666666643
No 130
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.19 E-value=4.9e-06 Score=67.60 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCC--CCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG--VDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHA 111 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~--~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 111 (162)
+++.++|.|| ++||+.|... .|.+.++++.+++.+ + .+..|..+ .+.++++.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~-~~~~~~~a~~~~~~~~~v-~~~~vd~~-----------------------~~~~l~~~ 70 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSL-APEYEKAADELKKKGPPI-KLAKVDAT-----------------------EEKDLAQK 70 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhh-hHHHHHHHHHHhhcCCce-EEEEEECC-----------------------CcHHHHHh
Confidence 4555666666 8999999997 999999999988665 4 44444432 23568888
Q ss_pred cCCccccccCCCCccceeEEEEEcCCeE-EEEEee
Q 038822 112 LGLELDLSEKGLGTQSRRFALLVDDLKV-KAANVE 145 (162)
Q Consensus 112 ~gv~~~~~~~~~~~~~~~~~~ii~~g~i-~~~~~~ 145 (162)
|++. +.|+ .++..+|+. +..+.|
T Consensus 71 ~~i~--------~~Pt---~~~~~~g~~~~~~~~g 94 (462)
T TIGR01130 71 YGVS--------GYPT---LKIFRNGEDSVSDYNG 94 (462)
T ss_pred CCCc--------cccE---EEEEeCCccceeEecC
Confidence 9887 4553 777777776 555544
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=98.19 E-value=5.2e-06 Score=68.01 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=49.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
+++.++|.|| +.||+.|... .|.+.++++.+++.+. .+.....| .+.+..++++|+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~-~p~~~~~a~~~~~~~~-~i~~~~vd---------------------~~~~~~l~~~~~ 103 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRL-APEYKKAAKMLKEKKS-EIVLASVD---------------------ATEEMELAQEFG 103 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHh-hHHHHHHHHHHHhcCC-cEEEEEEE---------------------CCCCHHHHHhcC
Confidence 4556666666 8999999997 9999999988875543 33333232 123467889999
Q ss_pred CccccccCCCCccceeEEEEEcCCeEE
Q 038822 114 LELDLSEKGLGTQSRRFALLVDDLKVK 140 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~~g~i~ 140 (162)
+. +.|+ .++.++|+.+
T Consensus 104 i~--------~~Pt---~~~~~~g~~~ 119 (477)
T PTZ00102 104 VR--------GYPT---IKFFNKGNPV 119 (477)
T ss_pred CC--------cccE---EEEEECCceE
Confidence 87 5664 7777866544
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=98.11 E-value=8.5e-06 Score=66.75 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALG 113 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
.|+.++|.|| ++||+.|+.. .|.+.++++.+++.+...+..+..+. +....+.|+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~-~p~~~~~a~~~~~~~~v~~~~id~~~-----------------------~~~~~~~~~ 428 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNL-EPVYNELGEKYKDNDSIIVAKMNGTA-----------------------NETPLEEFS 428 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHH-HHHHHHHHHHhccCCcEEEEEEECCC-----------------------CccchhcCC
Confidence 5778888888 8999999997 99999999988764320343344332 223456777
Q ss_pred CccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 114 LELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 114 v~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
+. ++|+ .++.+ ++++...+.|... .+.+.+.|+
T Consensus 429 v~--------~~Pt---~~~~~~~~~~~~~~~G~~~---~~~l~~~i~ 462 (477)
T PTZ00102 429 WS--------AFPT---ILFVKAGERTPIPYEGERT---VEGFKEFVN 462 (477)
T ss_pred Cc--------ccCe---EEEEECCCcceeEecCcCC---HHHHHHHHH
Confidence 76 5664 77777 6666445544322 245555444
No 133
>PLN02309 5'-adenylylsulfate reductase
Probab=98.05 E-value=1.8e-05 Score=64.62 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
++++++|.|| +.||++|+.. .|.+.++.+++...++ .+..|..+
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m-~p~~e~LA~~~~~~~V-~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAM-EASYEELAEKLAGSGV-KVAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCe-EEEEEECC
Confidence 4677777777 9999999997 9999999999987677 77777766
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=98.00 E-value=1.6e-05 Score=58.28 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=46.7
Q ss_pred CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 36 KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 36 k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+.+|++|| ++|||.|.. +.+.+.++.+++. ++ .++-|..+ |++.
T Consensus 18 g~~vl~f~-a~w~~~C~~-m~~vl~~l~~~~~--~~-~F~~V~~d-------------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQ-LMDVCNALVEDFP--SL-EFYVVNLA-------------------------------DANN 61 (204)
T ss_pred CcEEEEEe-CCCCcchHH-HHHHHHHHHHHCC--Cc-EEEEEccc-------------------------------cCcc
Confidence 33555555 999999999 4899999999884 36 66666543 7776
Q ss_pred cccccCCCCccceeEEEEEcCCeEEEEEeec
Q 038822 116 LDLSEKGLGTQSRRFALLVDDLKVKAANVES 146 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~ 146 (162)
+.|+ +++..+|+++-...|.
T Consensus 62 --------~vPt---fv~~~~g~~i~r~~G~ 81 (204)
T PTZ00062 62 --------EYGV---FEFYQNSQLINSLEGC 81 (204)
T ss_pred --------cceE---EEEEECCEEEeeeeCC
Confidence 5663 6777799998887763
No 135
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.00 E-value=5.3e-05 Score=46.77 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.7
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHH
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
+.|| ++|||.|..- .+.+.++.+++.
T Consensus 3 i~~~-a~~C~~C~~~-~~~~~~~~~e~~ 28 (76)
T TIGR00412 3 IQIY-GTGCANCQMT-EKNVKKAVEELG 28 (76)
T ss_pred EEEE-CCCCcCHHHH-HHHHHHHHHHcC
Confidence 5666 7999999996 899999988764
No 136
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.90 E-value=0.00016 Score=50.45 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=76.7
Q ss_pred CCCCCCCCCeeeeeee------cCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHH-HhHHHHHhC-----CC
Q 038822 4 IAVGDPLPDGTLVYFD------EQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFI-EKADELQSK-----GV 71 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~------~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~-~~~~~~~~~-----~~ 71 (162)
++.|+++|..++.--+ .+.+.++++...+ .||..||.-..|. .. ..+++ .+.+.+++. .+
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l-~GKVrviq~iAGr------~s-ake~N~~l~~aik~a~f~~d~y 72 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQL-PGKVRVIQHIAGR------SS-AKEMNAPLIEAIKAAKFPHDKY 72 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCcccc-CCCEEEEEEeccC------Cc-hhHhhHHHHHHHHHcCCCccce
Confidence 5789999999886000 0123345556664 7885555544231 21 22322 344444433 35
Q ss_pred CeEEEE-EcCCH-----HHHHHHHHhCCCCCceE-EEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEE
Q 038822 72 DEILCI-SVNDP-----FVMKAWAKTFPKNKSVK-FLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAAN 143 (162)
Q Consensus 72 ~~v~~i-s~d~~-----~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~ 143 (162)
+..+| +.|+. --.+...+...-..++. ++.|.++.+.++|++..+ ....+|+| +|+|+|+.
T Consensus 73 -qtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~----------~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 73 -QTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE----------SSAIIVLDKQGKVQFVK 141 (160)
T ss_pred -eEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC----------CceEEEEcCCccEEEEE
Confidence 55554 44421 12233333333211443 789999999999999732 12377778 99999999
Q ss_pred eecCCcceeCCHHHHHh
Q 038822 144 VESGGDFTVSSADDILK 160 (162)
Q Consensus 144 ~~~~~~~~~~~~~~il~ 160 (162)
-|.-.+ .+++++++
T Consensus 142 ~G~Ls~---~Ev~qVi~ 155 (160)
T PF09695_consen 142 EGALSP---AEVQQVIA 155 (160)
T ss_pred CCCCCH---HHHHHHHH
Confidence 877554 55555554
No 137
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.81 E-value=0.00012 Score=55.35 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=81.0
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHh-C--CCCeEEEEEcCCHHHH
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQS-K--GVDEILCISVNDPFVM 85 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~-~--~~~~v~~is~d~~~~~ 85 (162)
..|+|..+ +..|+.+++.+.++||..||..+...|---|... . .....+++.. . .+ +++-|+...-. +
T Consensus 100 yFP~l~g~----tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~s-w--~~p~~~~~~~~~~~~~-q~v~In~~e~~-~ 170 (252)
T PF05176_consen 100 YFPNLQGK----TLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDS-W--TSPFLEDFLQEPYGRV-QIVEINLIENW-L 170 (252)
T ss_pred cCCCCccc----cCCCCCcccccccCCceEEEEEeehHHHHHHHHH-H--hhHHHHHHhhCCCCce-EEEEEecchHH-H
Confidence 57899988 7788899998888999888777765554444433 1 2234445543 3 56 88888874321 1
Q ss_pred HHHHHhC---CC--------CCceEEEEcC--CchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcce
Q 038822 86 KAWAKTF---PK--------NKSVKFLADG--SAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFT 151 (162)
Q Consensus 86 ~~~~~~~---~~--------~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~ 151 (162)
++|+... ++ ...+-++.+. ...+-+.+|+.+. ...++||+| +|+|||+-.|...+
T Consensus 171 k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~---------~~GYvyLVD~~grIRWagsG~At~-- 239 (252)
T PF05176_consen 171 KSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS---------YVGYVYLVDPNGRIRWAGSGPATP-- 239 (252)
T ss_pred HHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC---------CcCeEEEECCCCeEEeCccCCCCH--
Confidence 2222111 00 0134344433 4578899999853 234699999 99999999987665
Q ss_pred eCCHHHH
Q 038822 152 VSSADDI 158 (162)
Q Consensus 152 ~~~~~~i 158 (162)
++++.+
T Consensus 240 -~E~~~L 245 (252)
T PF05176_consen 240 -EELESL 245 (252)
T ss_pred -HHHHHH
Confidence 444444
No 138
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.81 E-value=0.00021 Score=45.93 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=40.1
Q ss_pred eEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 26 QVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 26 ~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
....... +++++++.|| +.|||.|... ++.+.++.+++.. .+ .++.+...
T Consensus 24 ~~~~~~~-~~~~~~v~f~-~~~C~~C~~~-~~~l~~~~~~~~~-~~-~~~~i~~~ 73 (127)
T COG0526 24 PLSLSEL-KGKPVLVDFW-APWCPPCRAE-APLLEELAEEYGG-DV-EVVAVNVD 73 (127)
T ss_pred ceehhhc-CCceEEEEEE-cCcCHHHHhh-chhHHHHHHHhcC-Cc-EEEEEECC
Confidence 3444543 5788888888 9999999997 9999999999876 56 78888875
No 139
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.75 E-value=0.0002 Score=47.53 Aligned_cols=80 Identities=4% Similarity=0.003 Sum_probs=46.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhH-H--HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPG-F--IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~-l--~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
++|+++|+|+ ++||+.|..- ... + .+..+.+++ +. ..+.+..++++ ..++++
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~-~~~vl~~~~v~~~l~~-~~-v~~~~d~~~~e---------------------~~~~~~ 70 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVL-NRDLWSNESVKEFIRE-NF-IFWQCDIDSSE---------------------GQRFLQ 70 (114)
T ss_pred hCceEEEEEe-cCCcchHHHH-HHHHcCCHHHHHHHHh-CE-EEEEecCCCcc---------------------HHHHHH
Confidence 5677777777 8999999883 222 2 123333332 33 33444443322 234667
Q ss_pred HcCCccccccCCCCccceeEEEEEc--CCeEEEEEeecCCc
Q 038822 111 ALGLELDLSEKGLGTQSRRFALLVD--DLKVKAANVESGGD 149 (162)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~ii~--~g~i~~~~~~~~~~ 149 (162)
.|++. ++|+ .++++ +|++++...|..++
T Consensus 71 ~~~~~--------~~P~---~~~i~~~~g~~l~~~~G~~~~ 100 (114)
T cd02958 71 SYKVD--------KYPH---IAIIDPRTGEVLKVWSGNITP 100 (114)
T ss_pred HhCcc--------CCCe---EEEEeCccCcEeEEEcCCCCH
Confidence 77775 4554 66665 79999988876443
No 140
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.73 E-value=0.00023 Score=45.35 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=44.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
.+++-+.+|.+.|||.|..- .+.+.++..++. ++ .+..+..+. ..++++.||+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~-~~~~~~l~~~~~--~i-~~~~vd~~~-----------------------~~e~a~~~~V 63 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDV-VQALNLMAVLNP--NI-EHEMIDGAL-----------------------FQDEVEERGI 63 (89)
T ss_pred CCCEEEEEEECCCCCCcHHH-HHHHHHHHHHCC--Cc-eEEEEEhHh-----------------------CHHHHHHcCC
Confidence 45677777779999999995 777777775542 35 455444431 2457788998
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEE
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAA 142 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~ 142 (162)
. +.| ++++ ||++++.
T Consensus 64 ~--------~vP----t~vi-dG~~~~~ 78 (89)
T cd03026 64 M--------SVP----AIFL-NGELFGF 78 (89)
T ss_pred c--------cCC----EEEE-CCEEEEe
Confidence 7 566 3444 6887774
No 141
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.63 E-value=0.00019 Score=44.79 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHH--HhHHH-HHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFI--EKADE-LQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~--~~~~~-~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
.+|+++|.|. ++||+.|..- -..+- ....+ +. +++ ..+-|..++.+...++.. .++ |.-++.||
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l-~~~~~~~~~v~~~~~-~~f-v~v~vd~~~~~~~~~~~~-~~~--P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKL-EREVFSDPEVQEALN-KNF-VLVKVDVDDEDPNAQFDR-QGY--PTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHH-HHHTTTSHHHHHHHH-HCS-EEEEEETTTHHHHHHHHH-CSS--SEEEEEET
T ss_pred cCCCEEEEEE-CCCCHhHHHH-HHHHcCCHHHHHHHH-CCE-EEEEEEcCCCChhHHhCC-ccC--CEEEEeCC
Confidence 5788888886 9999999983 34431 22233 33 567 677777777666554433 555 66666664
No 142
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.62 E-value=0.00029 Score=52.20 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=80.0
Q ss_pred EehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCC--eEEEEEcCCH-HHHHH-HHHhCCCCCceEEEE
Q 038822 27 VSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVD--EILCISVNDP-FVMKA-WAKTFPKNKSVKFLA 102 (162)
Q Consensus 27 ~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~--~v~~is~d~~-~~~~~-~~~~~~~~~~~~~l~ 102 (162)
..+.+. .|+.+||.+..+ +|..|..+ +..|..+..++++.|.. .+++|+.... ..... .+++. ....|||+.
T Consensus 19 ~pm~~~-~G~VtvVALL~a-sc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r-~~~~ipVyq 94 (238)
T PF04592_consen 19 DPMLNS-LGHVTVVALLQA-SCYFCLLQ-ASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR-VSEHIPVYQ 94 (238)
T ss_pred hHhhhc-CCcEEeeeehhh-hhHHHHHH-HHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh-CCCCCceec
Confidence 345554 789788888765 69999998 99999999999977643 5667765433 22222 22222 212699986
Q ss_pred -c-CCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 103 -D-GSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 103 -D-~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
| .+..+...++-.. .. +||.| -|+++|...-+.+-+....+++.++
T Consensus 95 q~~~q~dvW~~L~G~k--------dD----~~iyDRCGrL~~~i~~P~S~l~~~~ve~Ai~ 143 (238)
T PF04592_consen 95 QDENQPDVWELLNGSK--------DD----FLIYDRCGRLTYHIPLPYSFLQFPYVEAAIK 143 (238)
T ss_pred CCccccCHHHHhCCCc--------Cc----EEEEeccCcEEEEecCcHHHhcCHHHHHHHH
Confidence 3 4467888887652 12 78888 9999999887655555566666654
No 143
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.56 E-value=0.00055 Score=50.58 Aligned_cols=30 Identities=17% Similarity=-0.023 Sum_probs=20.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADE 65 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~ 65 (162)
.+++++..|.++|||+|..- .+.++++..+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~-~~~l~~l~~~ 161 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYA-VLMAHKFALA 161 (215)
T ss_pred CCCcEEEEEECCCCCCcHHH-HHHHHHHHHh
Confidence 45666665569999999985 6555555433
No 144
>PHA02125 thioredoxin-like protein
Probab=97.54 E-value=0.00066 Score=41.62 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=37.2
Q ss_pred EEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCcccc
Q 038822 39 ILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDL 118 (162)
Q Consensus 39 vl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 118 (162)
|+.|+ ++||+.|+.- .+.|.++ .+ .++-|. .|...+++++|++.
T Consensus 2 iv~f~-a~wC~~Ck~~-~~~l~~~-------~~-~~~~vd-----------------------~~~~~~l~~~~~v~--- 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMV-KPMLANV-------EY-TYVDVD-----------------------TDEGVELTAKHHIR--- 45 (75)
T ss_pred EEEEE-CCCCHhHHHH-HHHHHHH-------hh-eEEeee-----------------------CCCCHHHHHHcCCc---
Confidence 45555 9999999985 6766432 12 222111 24456788999987
Q ss_pred ccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 119 SEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 119 ~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
+.| +++ +|+.+....+
T Consensus 46 -----~~P----T~~--~g~~~~~~~G 61 (75)
T PHA02125 46 -----SLP----TLV--NTSTLDRFTG 61 (75)
T ss_pred -----eeC----eEE--CCEEEEEEeC
Confidence 566 455 6776665554
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.50 E-value=0.00054 Score=38.92 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=33.5
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHH
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAW 88 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 88 (162)
+.|| +.||+.|... .+.++++ .....++ .+..++.+......++
T Consensus 2 ~~~~-~~~c~~c~~~-~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 2 VLFY-APWCPFCQAL-RPVLAEL--ALLNKGV-KFEAVDVDEDPALEKE 45 (69)
T ss_pred EEEE-CCCChhHHhh-hhHHHHH--HhhCCCc-EEEEEEcCCChHHhhH
Confidence 4455 7899999998 8999888 4555678 8999998776555544
No 146
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.49 E-value=0.00026 Score=48.25 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~ 54 (162)
.+|+++|+|+ ++|||.|.+-
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l 41 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQAL 41 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHH
Confidence 5788888866 9999999983
No 147
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00035 Score=57.29 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=55.6
Q ss_pred hhcCCCeEE-EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 31 SLAAGKKVI-LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 31 ~~~~gk~vv-l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
++..+...+ +.|| +.||..|.+- .|++.+.+..+++.+- .|-..-+|.. .++.++
T Consensus 37 ~~i~~~~~vlVeFY-APWCghck~L-aPey~kAA~~Lke~~s-~i~LakVDat---------------------~~~~~~ 92 (493)
T KOG0190|consen 37 ETINGHEFVLVEFY-APWCGHCKAL-APEYEKAATELKEEGS-PVKLAKVDAT---------------------EESDLA 92 (493)
T ss_pred HHhccCceEEEEEE-chhhhhhhhh-CcHHHHHHHHhhccCC-CceeEEeecc---------------------hhhhhH
Confidence 333455445 5555 9999999995 9999999999987643 2222222321 225678
Q ss_pred HHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
.+|++. |.|+ .-|..+|+....+. ++ ++++.|+.
T Consensus 93 ~~y~v~--------gyPT---lkiFrnG~~~~~Y~---G~---r~adgIv~ 126 (493)
T KOG0190|consen 93 SKYEVR--------GYPT---LKIFRNGRSAQDYN---GP---READGIVK 126 (493)
T ss_pred hhhcCC--------CCCe---EEEEecCCcceecc---Cc---ccHHHHHH
Confidence 888887 6773 55555888733332 22 55666654
No 148
>smart00594 UAS UAS domain.
Probab=97.09 E-value=0.0033 Score=42.25 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=15.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~ 54 (162)
.+|.++|+|+ +.||+.|..-
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~ 45 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVF 45 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHH
Confidence 4667777777 8999999984
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.03 E-value=0.0011 Score=42.65 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|+++++.|+ +.||+.|..- .+.+.+++++++++ + .++.|..+
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~-~~~~~~vA~~~~~~-v-~f~~vd~~ 53 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEEL-RERFKEVAKKFKGK-L-LFVVVDAD 53 (103)
T ss_pred CCCEEEEEE-cCChhhHHHH-HHHHHHHHHHhCCe-E-EEEEEchH
Confidence 677877777 7899999996 99999999999743 5 55555554
No 150
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.02 E-value=0.0019 Score=38.33 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=22.2
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV 79 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~ 79 (162)
.|.+.|||.|..- .+.++++.+.. .++ .+.-+..
T Consensus 5 ~f~~~~C~~C~~~-~~~l~~l~~~~--~~i-~~~~id~ 38 (67)
T cd02973 5 VFVSPTCPYCPDA-VQAANRIAALN--PNI-SAEMIDA 38 (67)
T ss_pred EEECCCCCCcHHH-HHHHHHHHHhC--Cce-EEEEEEc
Confidence 4448899999996 77777775432 245 5555544
No 151
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0018 Score=48.52 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=51.8
Q ss_pred ehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCch
Q 038822 28 SVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAK 107 (162)
Q Consensus 28 ~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~ 107 (162)
.|+.. ++|.+++.|. ++||.+|.+- .|.+..+..++. +. .++=|.+| .-+.
T Consensus 15 ~ls~a-g~k~v~Vdft-a~wCGPCk~I-aP~Fs~lankYp--~a-VFlkVdVd-----------------------~c~~ 65 (288)
T KOG0908|consen 15 ELSAA-GGKLVVVDFT-ASWCGPCKRI-APIFSDLANKYP--GA-VFLKVDVD-----------------------ECRG 65 (288)
T ss_pred hhhcc-CceEEEEEEE-ecccchHHhh-hhHHHHhhhhCc--cc-EEEEEeHH-----------------------Hhhc
Confidence 45553 5666666666 9999999997 999999999984 44 45545443 2244
Q ss_pred HHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 108 YTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 108 ~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
.+..+||. ++|+ ++...+|+=+....+
T Consensus 66 taa~~gV~--------amPT---Fiff~ng~kid~~qG 92 (288)
T KOG0908|consen 66 TAATNGVN--------AMPT---FIFFRNGVKIDQIQG 92 (288)
T ss_pred hhhhcCcc--------cCce---EEEEecCeEeeeecC
Confidence 56778887 5663 555557765555554
No 152
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.85 E-value=0.003 Score=47.36 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc-------CCHHHH----------HHHHH---hCC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV-------NDPFVM----------KAWAK---TFP 93 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~-------d~~~~~----------~~~~~---~~~ 93 (162)
.|+.+|+.|. -..||+|++- .+.+.++. +.++ .|..+.. +..... ++|.+ ...
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl-~~~l~~~~----~~~v-~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKL-HEQMKDYN----ALGI-TVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHH-HHHHHHHh----cCCe-EEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 3555555555 6779999996 56665543 3466 5544311 111111 12211 111
Q ss_pred CCC-ceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 94 KNK-SVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 94 ~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
... ......+.+.++++.+|+. |+| ++|+.||+++ .|..+ .+.++++|+.
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~--------gTP----tiv~~~G~~~---~G~~~---~~~L~~~l~~ 229 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQ--------GTP----AIVLSNGTLV---PGYQG---PKEMKAFLDE 229 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCc--------ccc----EEEEcCCeEe---eCCCC---HHHHHHHHHH
Confidence 100 1111223446788888887 777 6778788866 22222 3566666653
No 153
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.84 E-value=0.0013 Score=53.46 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC--CCCeEEEEEcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK--GVDEILCISVN 80 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~--~~~~v~~is~d 80 (162)
.++.++|.|| ++||+.|... .|.+.+++++++.. ++ .+..+..+
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~i-~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNL-APIYEELAEKYKDAESDV-VIAKMDAT 408 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHH-HHHHHHHHHHhhcCCCcE-EEEEEECC
Confidence 4677777777 8999999997 99999999999863 45 56666653
No 154
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.70 E-value=0.00015 Score=49.40 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=26.7
Q ss_pred hhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 29 VHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 29 l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+..+ .++..+|+|. ++|||.|... +|.+.++++... ++ .+=.++.|
T Consensus 36 l~~~-~~~~~ilvi~-e~WCgD~~~~-vP~l~kiae~~p--~i-~~~~i~rd 81 (129)
T PF14595_consen 36 LKSI-QKPYNILVIT-ETWCGDCARN-VPVLAKIAEANP--NI-EVRIILRD 81 (129)
T ss_dssp HHT---S-EEEEEE---TT-HHHHHH-HHHHHHHHHH-T--TE-EEEEE-HH
T ss_pred HHhc-CCCcEEEEEE-CCCchhHHHH-HHHHHHHHHhCC--CC-eEEEEEec
Confidence 3443 4444555555 9999999997 999999998753 45 44444443
No 155
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.63 E-value=0.022 Score=38.89 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=31.8
Q ss_pred cCCchHHHHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHh
Q 038822 103 DGSAKYTHALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 103 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
|.+..++++||+. ++|+ .++.+||+++....+.... .++.+.++
T Consensus 78 D~~~~LA~~fgV~--------siPT---Ll~FkdGk~v~~i~G~~~k---~~l~~~I~ 121 (132)
T PRK11509 78 EQSEAIGDRFGVF--------RFPA---TLVFTGGNYRGVLNGIHPW---AELINLMR 121 (132)
T ss_pred CCCHHHHHHcCCc--------cCCE---EEEEECCEEEEEEeCcCCH---HHHHHHHH
Confidence 4567899999998 5664 8888899999999875443 44444443
No 156
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.60 E-value=0.0088 Score=35.57 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCC
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFP 93 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~ 93 (162)
.+|.++|||.|+.. .+.|. +.++ .+..+..+. ++...++.+.++
T Consensus 3 ~lf~~~~C~~C~~~-~~~l~-------~~~i-~~~~vdi~~~~~~~~~~~~~~~ 47 (74)
T TIGR02196 3 KVYTTPWCPPCKKA-KEYLT-------SKGI-AFEEIDVEKDSAAREEVLKVLG 47 (74)
T ss_pred EEEcCCCChhHHHH-HHHHH-------HCCC-eEEEEeccCCHHHHHHHHHHhC
Confidence 45558999999995 55443 3567 777776653 333333444443
No 157
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.23 E-value=0.026 Score=37.70 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=46.2
Q ss_pred ehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEE--EEEcCCHHHHHHHHHhCCCCCceEEEEcC
Q 038822 28 SVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEIL--CISVNDPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 28 ~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~--~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
++.+..++ +.++|.|+ ++| |.|-+ | |.+.++++++....- .|+ -|..++ ++- ..
T Consensus 10 nF~~~v~~~~~vlV~F~-A~~-Pwc~k-~-~~~~~LA~e~~~aa~-~v~lakVd~~d----------~~~--------~~ 66 (116)
T cd03007 10 TFYKVIPKFKYSLVKFD-TAY-PYGEK-H-EAFTRLAESSASATD-DLLVAEVGIKD----------YGE--------KL 66 (116)
T ss_pred hHHHHHhcCCcEEEEEe-CCC-CCCCC-h-HHHHHHHHHHHhhcC-ceEEEEEeccc----------ccc--------hh
Confidence 34444333 45666666 888 88886 4 999999999975432 332 233321 110 02
Q ss_pred CchHHHHcCCccccccCCCCccceeEEEEEcCCe
Q 038822 105 SAKYTHALGLELDLSEKGLGTQSRRFALLVDDLK 138 (162)
Q Consensus 105 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~~g~ 138 (162)
+.+++++|||..+ ++|+ .++..+|.
T Consensus 67 ~~~L~~~y~I~~~------gyPT---l~lF~~g~ 91 (116)
T cd03007 67 NMELGERYKLDKE------SYPV---IYLFHGGD 91 (116)
T ss_pred hHHHHHHhCCCcC------CCCE---EEEEeCCC
Confidence 3568899998632 4564 66777664
No 158
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.19 E-value=0.0091 Score=36.09 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=18.6
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+|.++|||.|++. .+.|. +.++ ..-.+..+
T Consensus 4 ly~~~~C~~C~~~-~~~L~-------~~~~-~~~~idi~ 33 (77)
T TIGR02200 4 VYGTTWCGYCAQL-MRTLD-------KLGA-AYEWVDIE 33 (77)
T ss_pred EEECCCChhHHHH-HHHHH-------HcCC-ceEEEeCc
Confidence 3448999999995 55443 3355 45455554
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.97 E-value=0.023 Score=41.27 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=17.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIE 61 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~ 61 (162)
++..|++|. ...||+|++. .+.+.+
T Consensus 77 ~~~~i~~f~-D~~Cp~C~~~-~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFT-DPDCPYCRKL-EKELKP 101 (197)
T ss_pred CCEEEEEEE-CCCCccHHHH-HHHHhh
Confidence 455555555 7889999996 677665
No 160
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0089 Score=49.28 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
.+|-|+|.|+ +.||++|.+- .|.++++++.+++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~l-aP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKAL-APIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-Ccccchhhhh-hhHHHHHHHHhcCC
Confidence 3677888888 9999999996 99999999999874
No 161
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.018 Score=38.49 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=36.9
Q ss_pred ehhhhcCCCeEEEEEeeC-------CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 28 SVHSLAAGKKVILFGVPG-------DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 28 ~l~~~~~gk~vvl~f~~~-------~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
+++++.+|+.+.+.|.-+ +|||.|.+- .|-+.+..+.+. .++ .++.+.+.+
T Consensus 18 ~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~A-EPvi~~alk~ap-~~~-~~v~v~VG~ 75 (128)
T KOG3425|consen 18 TLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAA-EPVINEALKHAP-EDV-HFVHVYVGN 75 (128)
T ss_pred HHHHHhCCceEEEEEecccCCCCCCcCCchHHHh-hHHHHHHHHhCC-Cce-EEEEEEecC
Confidence 355554677777777733 699999996 999988887554 467 788777754
No 162
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.66 E-value=0.0088 Score=40.17 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCCeEEEEEeeC------CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 34 AGKKVILFGVPG------DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 34 ~gk~vvl~f~~~------~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
++++++|+|..+ +|||.|+.- .|.+.+......+ +. .++-+.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~a-ep~v~~~f~~~~~-~~-~lv~v~VG~r 69 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAA-EPVVEKAFKKAPE-NA-RLVYVEVGDR 69 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHH-HHHHHHHHHH-ST-TE-EEEEEE---H
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHH-HHHHHHHHHhCCC-Cc-eEEEEEcCCH
Confidence 467888888844 699999997 9999988877543 55 6777777653
No 163
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.56 E-value=0.031 Score=33.04 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=28.0
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEEc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLAD 103 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~D 103 (162)
.+|...|||.|..- ...|.+ .++ .+..+..+. .....++.+..+. ..+|.+.+
T Consensus 3 ~l~~~~~c~~c~~~-~~~l~~-------~~i-~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~ 56 (73)
T cd02976 3 TVYTKPDCPYCKAT-KRFLDE-------RGI-PFEEVDVDEDPEALEELKKLNGY-RSVPVVVI 56 (73)
T ss_pred EEEeCCCChhHHHH-HHHHHH-------CCC-CeEEEeCCCCHHHHHHHHHHcCC-cccCEEEE
Confidence 34457899999985 443433 466 666666654 2223333333221 24555544
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.33 E-value=0.024 Score=43.04 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=18.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKAD 64 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~ 64 (162)
++.+|..|. -..||+|++- ..++.++.+
T Consensus 117 ak~~I~vFt-Dp~CpyC~kl-~~~l~~~~~ 144 (251)
T PRK11657 117 APRIVYVFA-DPNCPYCKQF-WQQARPWVD 144 (251)
T ss_pred CCeEEEEEE-CCCChhHHHH-HHHHHHHhh
Confidence 444555555 6779999996 666666543
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.02 E-value=0.034 Score=34.24 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=29.2
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLAD 103 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (162)
.|..+|||.|.+- ...|. +.|+ ..-.+..+.......+.+..+. ..+|.+..
T Consensus 12 ly~~~~Cp~C~~a-k~~L~-------~~gi-~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i 63 (79)
T TIGR02190 12 VFTKPGCPFCAKA-KATLK-------EKGY-DFEEIPLGNDARGRSLRAVTGA-TTVPQVFI 63 (79)
T ss_pred EEECCCCHhHHHH-HHHHH-------HcCC-CcEEEECCCChHHHHHHHHHCC-CCcCeEEE
Confidence 3447899999995 44443 4566 6666666543334445444442 25555443
No 166
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.93 E-value=0.044 Score=33.61 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=21.7
Q ss_pred eeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 43 VPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 43 ~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
|..+|||.|.+. .+.|.++. ++ ..+ .++-|+.+
T Consensus 4 f~~~~Cp~C~~~-~~~L~~~~--i~-~~~-~~~~v~~~ 36 (84)
T TIGR02180 4 FSKSYCPYCKKA-KEILAKLN--VK-PAY-EVVELDQL 36 (84)
T ss_pred EECCCChhHHHH-HHHHHHcC--CC-CCC-EEEEeeCC
Confidence 448999999996 76676655 21 125 56666654
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.1 Score=41.96 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
++..++.|| +.||..|.+. .+.+.++...+++. + .+..|..+ .+....++++.
T Consensus 47 ~~~~~v~fy-apwc~~c~~l-~~~~~~~~~~l~~~-~-~~~~vd~~---~~~~~~~~y~i 99 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKL-APTYKKLAKALKGK-V-KIGAVDCD---EHKDLCEKYGI 99 (383)
T ss_pred CCceEEEEE-CCCCcchhhh-chHHHHHHHHhcCc-e-EEEEeCch---hhHHHHHhcCC
Confidence 456777777 8999999997 99999998888652 2 34444433 45555555554
No 168
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.54 E-value=0.074 Score=34.24 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=24.4
Q ss_pred hhcCCCeEEEEEeeC---CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 31 SLAAGKKVILFGVPG---DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 31 ~~~~gk~vvl~f~~~---~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
.+.+.+++||+--.. +|||+|.+- ..- +++.|+ ....+..+
T Consensus 7 ~~i~~~~Vvvf~kg~~~~~~Cp~C~~a-k~l-------L~~~~i-~~~~~di~ 50 (97)
T TIGR00365 7 EQIKENPVVLYMKGTPQFPQCGFSARA-VQI-------LKACGV-PFAYVNVL 50 (97)
T ss_pred HHhccCCEEEEEccCCCCCCCchHHHH-HHH-------HHHcCC-CEEEEECC
Confidence 334566677775421 689999884 322 333566 66666654
No 169
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.42 E-value=0.079 Score=32.97 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=25.1
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
..|..+|||.|.+- ...|+++..+. .++ .+.-+..+
T Consensus 4 ~iy~~~~C~~C~~a-~~~L~~l~~~~--~~i-~~~~idi~ 39 (85)
T PRK11200 4 VIFGRPGCPYCVRA-KELAEKLSEER--DDF-DYRYVDIH 39 (85)
T ss_pred EEEeCCCChhHHHH-HHHHHhhcccc--cCC-cEEEEECC
Confidence 34457899999996 77788777554 356 56666654
No 170
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.25 E-value=0.13 Score=33.69 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
.++++|+=. ++.||.-..- +.++++.++...+. + .++-+-.-.. -+-...++++|||
T Consensus 19 ~~~~~iFKH-St~C~IS~~a-~~~~e~~~~~~~~~-~-~~y~l~v~~~-------------------R~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMA-LREFEKFWEESPDE-I-PVYYLDVIEY-------------------RPVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHH-HHHHHHHHHHHT------EEEEEGGGG-------------------HHHHHHHHHHHT-
T ss_pred cCcEEEEEe-CCCChhhHHH-HHHHHHHhhcCCcc-c-eEEEEEEEeC-------------------chhHHHHHHHhCC
Confidence 455555555 7778888885 77777777776543 5 4554443210 0123678999999
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEee
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVE 145 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~ 145 (162)
.- ..|-.+++.||+++|--..
T Consensus 76 ~H----------eSPQ~ili~~g~~v~~aSH 96 (105)
T PF11009_consen 76 KH----------ESPQVILIKNGKVVWHASH 96 (105)
T ss_dssp -------------SSEEEEEETTEEEEEEEG
T ss_pred Cc----------CCCcEEEEECCEEEEECcc
Confidence 73 3456999999999997754
No 171
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=94.17 E-value=0.12 Score=36.91 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhc--CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHH-------HHHhC----
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLA--AGKKVILFGVPGDFTPTCSLKHVPGFIEKAD-------ELQSK---- 69 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~-------~~~~~---- 69 (162)
.+.+|..+|+..+.- -.+++++.|.+.+ .|+|.|++|-...-.+.+... +..+.+..+ .|...
T Consensus 29 ~l~~G~Rlp~~~v~r---~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~-l~~l~~~L~~~~s~~~r~~~~~~~~ 104 (169)
T PF07976_consen 29 GLRPGRRLPSAKVVR---HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSR-LSALADYLESPSSFLSRFTPKDRDP 104 (169)
T ss_dssp TS-TTCB----EEEE---TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCH-HHHHHHHHHSTTSHHHHHSBTTS-T
T ss_pred CcCCccccCCceEEE---EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHH-HHHHHHHHHhcchHHHhcCCCCCCC
Confidence 589999999999972 3689999998865 589999999865545444442 454444332 22221
Q ss_pred --CCCeEEEEEcCC---------HHHHHHHHHhCCCCCceEEEEcC------CchHHHHcCCc
Q 038822 70 --GVDEILCISVND---------PFVMKAWAKTFPKNKSVKFLADG------SAKYTHALGLE 115 (162)
Q Consensus 70 --~~~~v~~is~d~---------~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~~gv~ 115 (162)
-+ +++.|...+ |+.++.+..++++ .-..++.|. .+.+++.|||-
T Consensus 105 ~s~~-~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~-~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 105 DSVF-DVLLIHSSPRDEVELFDLPEIFRPFDGKRGW-DYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp TSSE-EEEEEESS-CCCS-GGGS-CCCS-EETTTTC---SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCee-EEEEEecCCCCceeHHHCcHhhCcccCCCCc-cceeEEecCcccccCcccHHHhhCCC
Confidence 14 677787643 2223333333443 134566663 47888999974
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.09 E-value=0.16 Score=30.41 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=30.4
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEE
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~ 102 (162)
..|..++||.|..- ...|+ +.++ .+-.+..+. ++..+++.+..+....+|.+.
T Consensus 3 ~ly~~~~Cp~C~~a-k~~L~-------~~~i-~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 3 EIYTKPNCPYCVRA-KALLD-------KKGV-DYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEeCCCChHHHHH-HHHHH-------HCCC-cEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 34557889999995 43343 3566 666666643 455555665555321455443
No 173
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.08 E-value=0.087 Score=44.22 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=36.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhH-HHHhHHHHHhCCCCeEEEEEc-CCHHHHHHHHHhCCCC-CceEEEEcCC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPG-FIEKADELQSKGVDEILCISV-NDPFVMKAWAKTFPKN-KSVKFLADGS 105 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~-l~~~~~~~~~~~~~~v~~is~-d~~~~~~~~~~~~~~~-~~~~~l~D~~ 105 (162)
++|+|.|.|+ ++||-.|+.- -+. +++-...++-.++ ..+=... .+...+.+.+++++.- .|..++.+++
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~-e~~tfsd~~v~~~~~~~-vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKEN-EKYTFSDPQVQQALQDV-VLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhh-hhhccCcHHHHHhcCCe-EEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3458989888 9999999983 222 3344444444454 3332221 2223445555555431 1444445544
No 174
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.90 E-value=0.15 Score=31.64 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=31.0
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
..|...|||.|..- ...| +++|+ .+-.+..+......+.++..|. ..+|++...+
T Consensus 4 ~lYt~~~Cp~C~~a-k~~L-------~~~gI-~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~ 58 (81)
T PRK10329 4 TIYTRNDCVQCHAT-KRAM-------ESRGF-DFEMINVDRVPEAAETLRAQGF-RQLPVVIAGD 58 (81)
T ss_pred EEEeCCCCHhHHHH-HHHH-------HHCCC-ceEEEECCCCHHHHHHHHHcCC-CCcCEEEECC
Confidence 34557899999984 3333 45788 7777777643333333333442 2555554433
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.84 E-value=0.093 Score=30.70 Aligned_cols=52 Identities=13% Similarity=0.000 Sum_probs=29.1
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHH-HHhCCCCCceEEEEc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAW-AKTFPKNKSVKFLAD 103 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~-~~~~~~~~~~~~l~D 103 (162)
.|...|||.|+.- ...|. +.++ .+.-+..+......++ .+..+. ..+|++..
T Consensus 4 ly~~~~Cp~C~~~-~~~L~-------~~~i-~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~ 56 (72)
T cd02066 4 VFSKSTCPYCKRA-KRLLE-------SLGI-EFEEIDILEDGELREELKELSGW-PTVPQIFI 56 (72)
T ss_pred EEECCCCHHHHHH-HHHHH-------HcCC-cEEEEECCCCHHHHHHHHHHhCC-CCcCEEEE
Confidence 3447889999995 44444 3446 6666666543334443 444442 35665544
No 176
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.66 E-value=0.14 Score=30.76 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=29.7
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLAD 103 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (162)
+|...+||.|+.- ...|. +.|+ .+-.+..+......+.++..|. ..+|++..
T Consensus 3 ly~~~~Cp~C~~a-k~~L~-------~~~i-~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMT-KKALE-------EHGI-AFEEINIDEQPEAIDYVKAQGF-RQVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHH-HHHHH-------HCCC-ceEEEECCCCHHHHHHHHHcCC-cccCEEEE
Confidence 4557889999995 44443 4577 6666666543333444444453 24555544
No 177
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=93.49 E-value=0.049 Score=36.46 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=52.8
Q ss_pred ehhhhcCCCe-EEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCc
Q 038822 28 SVHSLAAGKK-VILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSA 106 (162)
Q Consensus 28 ~l~~~~~gk~-vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
.|+++ +++. +||+|-++.--+.-..+ +..|......+.++.+ .++.+..+...... + ++-.+.-.
T Consensus 2 ~L~~~-~w~~R~lvv~aps~~d~~~~~q-~~~L~~~~~~l~eRdi-~v~~i~~~~~~~~~------~-----~~~~~~~~ 67 (118)
T PF13778_consen 2 PLDQF-RWKNRLLVVFAPSADDPRYQQQ-LEELQNNRCGLDERDI-VVIVITGDGARSPG------K-----PLSPEDIQ 67 (118)
T ss_pred ChhHh-cCcCceEEEECCCCCCHHHHHH-HHHHHhhhhccccCce-EEEEEeCCcccccc------C-----cCCHHHHH
Confidence 36666 5553 55666555444444555 6666666667777777 66666544321111 0 01111225
Q ss_pred hHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeec
Q 038822 107 KYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVES 146 (162)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~ 146 (162)
.+.+.|++... + ++ ++++. ||.+...+..+
T Consensus 68 ~lr~~l~~~~~------~-f~---~vLiGKDG~vK~r~~~p 98 (118)
T PF13778_consen 68 ALRKRLRIPPG------G-FT---VVLIGKDGGVKLRWPEP 98 (118)
T ss_pred HHHHHhCCCCC------c-eE---EEEEeCCCcEEEecCCC
Confidence 67788887621 2 22 66666 99999987543
No 178
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.27 E-value=0.27 Score=32.80 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=43.8
Q ss_pred CCCeEEEEEeeCC----CCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 34 AGKKVILFGVPGD----FTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 34 ~gk~vvl~f~~~~----~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
.+|+++|+++ +. ||-+|+.. +.. .++.+-+. .++ -+++.+.++++. .+++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~-l~~-~~v~~~ln-~~f-v~w~~dv~~~eg---------------------~~la 69 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNT-LCA-PEVIEYIN-TRM-LFWACSVAKPEG---------------------YRVS 69 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHH-cCC-HHHHHHHH-cCE-EEEEEecCChHH---------------------HHHH
Confidence 5788888888 55 67777653 321 12222332 355 566677766552 5677
Q ss_pred HHcCCccccccCCCCccceeEEEEE---c-CCeEEEEEeec
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLV---D-DLKVKAANVES 146 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii---~-~g~i~~~~~~~ 146 (162)
+.+++. .+|. ..++ + +.+|+....|.
T Consensus 70 ~~l~~~--------~~P~---~~~l~~~~~~~~vv~~i~G~ 99 (116)
T cd02991 70 QALRER--------TYPF---LAMIMLKDNRMTIVGRLEGL 99 (116)
T ss_pred HHhCCC--------CCCE---EEEEEecCCceEEEEEEeCC
Confidence 888876 3443 5555 3 44556665554
No 179
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.13 E-value=0.18 Score=30.75 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCCCCCCCcCCHhHHHHhHHHH
Q 038822 45 GDFTPTCSLKHVPGFIEKADEL 66 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~~~~~ 66 (162)
+.+||.|..- ...+++...++
T Consensus 7 ~~~C~~C~~~-~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPEL-VQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHH-HHHHHHHHHHT
T ss_pred CCCCCCcHHH-HHHHHHHHHhc
Confidence 5669999974 66666666554
No 180
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.05 E-value=0.09 Score=32.12 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=28.5
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH-HHHHHHH-HhCCCCCceEEEE
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP-FVMKAWA-KTFPKNKSVKFLA 102 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~-~~~~~~~-~~~~~~~~~~~l~ 102 (162)
.+|...|||.|..- ...|+++.- .. .++-+..+.. ...+..+ +..+. ..+|.+.
T Consensus 3 ~~y~~~~Cp~C~~~-~~~l~~~~~-----~~-~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~ 58 (82)
T cd03419 3 VVFSKSYCPYCKRA-KSLLKELGV-----KP-AVVELDQHEDGSEIQDYLQELTGQ-RTVPNVF 58 (82)
T ss_pred EEEEcCCCHHHHHH-HHHHHHcCC-----Cc-EEEEEeCCCChHHHHHHHHHHhCC-CCCCeEE
Confidence 44557899999995 555555432 34 5555555432 3333333 33332 3555543
No 181
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.58 E-value=0.21 Score=29.85 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=18.4
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
.|..+|||.|.+- ...|+ +.++ ..-.+..+
T Consensus 5 lys~~~Cp~C~~a-k~~L~-------~~~i-~~~~~~v~ 34 (72)
T cd03029 5 LFTKPGCPFCARA-KAALQ-------ENGI-SYEEIPLG 34 (72)
T ss_pred EEECCCCHHHHHH-HHHHH-------HcCC-CcEEEECC
Confidence 3446789999995 43343 3566 55555554
No 182
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.40 E-value=0.14 Score=32.09 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=21.0
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+..|..+|||.|.+- ...|+++..++. ++ .+.-+..+
T Consensus 2 V~vys~~~Cp~C~~a-k~~L~~~~~~~~--~i-~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA-KQLAEKLAIERA--DF-EFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHH-HHHHHHhCcccC--CC-cEEEEECC
Confidence 345557899999995 555555442221 34 44445543
No 183
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=2.3 Score=30.07 Aligned_cols=92 Identities=9% Similarity=-0.011 Sum_probs=49.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHH----HhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFI----EKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~----~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
.+|+.+|.|= +..|+.|.+ +..-- ++.+.+. ..+ .++-+......... ....-....-...+++
T Consensus 41 ~~Kylllmfe-s~~C~yC~~--~KKd~~~~krlrEylk-~hf-~~~~l~i~~skpv~-------f~~g~kee~~s~~ELa 108 (182)
T COG2143 41 NDKYLLLMFE-SNGCSYCER--FKKDLKNVKRLREYLK-EHF-SAYYLNISYSKPVL-------FKVGDKEEKMSTEELA 108 (182)
T ss_pred cCcEEEEEEc-CCCChHHHH--HHHhhcchHHHHHHHh-hCe-EEEEEEeccCcceE-------eecCceeeeecHHHHH
Confidence 4676766666 666999987 33322 2333332 234 45544443211000 0000001111235799
Q ss_pred HHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 110 HALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
+.|++. ++|+ ++..| +|+-+....|-.+
T Consensus 109 ~kf~vr--------stPt---fvFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 109 QKFAVR--------STPT---FVFFDKTGKTILELPGYMP 137 (182)
T ss_pred HHhccc--------cCce---EEEEcCCCCEEEecCCCCC
Confidence 999997 5554 77778 9988887766433
No 184
>PRK10638 glutaredoxin 3; Provisional
Probab=91.50 E-value=0.27 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=28.8
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEE
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~ 102 (162)
+|...|||.|.+- ...|. +.++ ..-.+..+. .+....+.+..+. ..+|.+.
T Consensus 6 ly~~~~Cp~C~~a-~~~L~-------~~gi-~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~ 57 (83)
T PRK10638 6 IYTKATCPFCHRA-KALLN-------SKGV-SFQEIPIDGDAAKREEMIKRSGR-TTVPQIF 57 (83)
T ss_pred EEECCCChhHHHH-HHHHH-------HcCC-CcEEEECCCCHHHHHHHHHHhCC-CCcCEEE
Confidence 4446789999985 43333 3456 555555543 3344555555553 3566553
No 185
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.43 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=28.7
Q ss_pred CCCCCCCCcCCHhHHHHhHHHHHhCCCCeEE--EEEcCCHHHHHHHHHhC-CCCCceEEEEcCC
Q 038822 45 GDFTPTCSLKHVPGFIEKADELQSKGVDEIL--CISVNDPFVMKAWAKTF-PKNKSVKFLADGS 105 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~--~is~d~~~~~~~~~~~~-~~~~~~~~l~D~~ 105 (162)
.++||+|.+- ...|. ++|+ ... -+..+..+..+.++++. |. .++|.+...+
T Consensus 8 ~~~CPyC~~a-k~~L~-------~~g~-~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~ 61 (80)
T COG0695 8 KPGCPYCKRA-KRLLD-------RKGV-DYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGG 61 (80)
T ss_pred CCCCchHHHH-HHHHH-------HcCC-CcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECC
Confidence 4569999995 33333 4555 444 34445555666677666 32 3566554433
No 186
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=91.38 E-value=2 Score=28.07 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=46.2
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
...|++..+++++.++ .=+.|++++.+.+++..+-.. ..+++-.....+++++|+.
T Consensus 37 ~~WL~~~~~~L~~l~A-vGlVVnV~t~~~l~~Lr~lap---gl~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 37 RQWLQQNAAALKSLGA-VGLVVNVETAAALQRLRALAP---GLPLLPVSGDDLAERLGLR 92 (105)
T ss_pred HHHHHHHHHHHHHCCC-eEEEEecCCHHHHHHHHHHcC---CCcccCCCHHHHHHHhCCC
Confidence 4567889999998888 677899999999988777653 5778888888999999987
No 187
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.25 E-value=0.12 Score=29.81 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=23.3
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHH
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKA 87 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 87 (162)
.|...+||.|.+. ... +++.|+ ..-.+..+..+..++
T Consensus 3 vy~~~~C~~C~~~-~~~-------L~~~~i-~y~~~dv~~~~~~~~ 39 (60)
T PF00462_consen 3 VYTKPGCPYCKKA-KEF-------LDEKGI-PYEEVDVDEDEEARE 39 (60)
T ss_dssp EEESTTSHHHHHH-HHH-------HHHTTB-EEEEEEGGGSHHHHH
T ss_pred EEEcCCCcCHHHH-HHH-------HHHcCC-eeeEcccccchhHHH
Confidence 3447889999985 333 355677 777777765433333
No 188
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=91.16 E-value=3.6 Score=29.15 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=69.1
Q ss_pred CCCCCCeeeeeeecCCCceeEehhhhc--CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCC--------------
Q 038822 7 GDPLPDGTLVYFDEQDQLQQVSVHSLA--AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKG-------------- 70 (162)
Q Consensus 7 G~~~P~f~l~~~~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~-------------- 70 (162)
|..+|++.+.- -.+++++.|.+.+ .|+|-|++|-... .+..+ ...+..+.+.+.+..
T Consensus 1 G~R~~~a~V~r---~aD~~p~~L~~~~~adGrfrI~vFagd~---~~~~~-~~~l~~~~~~L~~~~~~~~~~~~~~~~~~ 73 (167)
T cd02979 1 GRRFPSAPVVR---QADALPVHLGHRLPADGRFRIYVFAGDI---APAQQ-KSRLTQLCDALDSPDSFPLRYTPRGADPD 73 (167)
T ss_pred CCcCCCceEEE---ecCCCCHhHhhhccCCCCEEEEEEcCCC---CchhH-HHHHHHHHHHHcCCcchHhhcCCCCCCCC
Confidence 66788888872 2478888887764 4889988887332 23444 566666666663321
Q ss_pred -CCeEEEEEcCCHH-----HHHHHH----HhCCCCCc-eEEEEcCC------chHHHHcCCccccccCCCCccceeEEEE
Q 038822 71 -VDEILCISVNDPF-----VMKAWA----KTFPKNKS-VKFLADGS------AKYTHALGLELDLSEKGLGTQSRRFALL 133 (162)
Q Consensus 71 -~~~v~~is~d~~~-----~~~~~~----~~~~~~~~-~~~l~D~~------~~~~~~~gv~~~~~~~~~~~~~~~~~~i 133 (162)
+..++.|...... .+-+.+ ...+. . ..++.|.. +...+.||+.-+ ....++
T Consensus 74 ~~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~--~~~~v~~d~~~~~~~~~~~~~~~gv~~~----------~g~vvv 141 (167)
T cd02979 74 SVFDVVTIHAAPRREIELLDLPAVLRPFGEKKGW--DYEKIYADDDSYHEGHGDAYEKYGIDPE----------RGAVVV 141 (167)
T ss_pred CcEEEEEEecCCccccchhhCcHhhcCCCCcccc--ceeeEEecCccccCCcccHHHhhCCCCC----------CCCEEE
Confidence 1156666554221 122222 22233 3 23566644 678899997521 123677
Q ss_pred Ec-CCeEEEEEe
Q 038822 134 VD-DLKVKAANV 144 (162)
Q Consensus 134 i~-~g~i~~~~~ 144 (162)
+. ||-|-++..
T Consensus 142 vRPDgyVg~~~~ 153 (167)
T cd02979 142 VRPDQYVALVGP 153 (167)
T ss_pred ECCCCeEEEEec
Confidence 77 998877654
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.03 E-value=0.34 Score=29.04 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=27.2
Q ss_pred CCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEE
Q 038822 45 GDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~ 102 (162)
.++||.|.+- ...|+ +.|+ .+-.+..+. ++...++.+..+. ..+|.+.
T Consensus 8 ~~~C~~C~ka-~~~L~-------~~gi-~~~~~di~~~~~~~~el~~~~g~-~~vP~v~ 56 (73)
T cd03027 8 RLGCEDCTAV-RLFLR-------EKGL-PYVEINIDIFPERKAELEERTGS-SVVPQIF 56 (73)
T ss_pred cCCChhHHHH-HHHHH-------HCCC-ceEEEECCCCHHHHHHHHHHhCC-CCcCEEE
Confidence 5789999995 43333 4566 666666643 4444455555442 3455443
No 190
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.85 E-value=0.089 Score=44.02 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=41.7
Q ss_pred eEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC-CCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 37 KVILFGVPGDFTPTCSLKHVPGFIEKADELQSK-GVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~-~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
.-+|.|| ++||+.|++- .|.+++++++.+.= .+..|.+|.... +.-.+.+++++. ..||.+
T Consensus 59 ~~lVEFy-~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~-~~N~~lCRef~V-~~~Ptl 120 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCAD-EENVKLCREFSV-SGYPTL 120 (606)
T ss_pred hHHHHHH-Hhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccc-hhhhhhHhhcCC-CCCcee
Confidence 4567787 8999999998 99999999998753 332455565543 344557777765 234433
No 191
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.85 E-value=0.57 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=22.1
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEE
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCI 77 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~i 77 (162)
+|....||.|..- .+.+.++.... ..++ .+.-.
T Consensus 3 ~f~d~~Cp~C~~~-~~~l~~~~~~~-~~~~-~~~~~ 35 (98)
T cd02972 3 EFFDPLCPYCYLF-EPELEKLLYAD-DGGV-RVVYR 35 (98)
T ss_pred EEECCCCHhHHhh-hHHHHHHHhhc-CCcE-EEEEe
Confidence 3447789999997 88888887333 3345 55443
No 192
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=90.54 E-value=3.1 Score=28.80 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=46.5
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
...|++..+++++.++ .=+.|++++.+.+++..+-.. ..+++-.....+++++++.
T Consensus 75 ~~WL~~~~~~L~~l~A-vGlVVNV~t~~~L~~Lr~lap---gl~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGA-VGLVVNVATEAALQRLRQLAP---GLPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHHHHCCC-eEEEEecCCHHHHHHHHHHcC---CCeecCCCHHHHHHHhCCC
Confidence 4568888999998888 677899999999998877653 6778887888999999997
No 193
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.75 Score=36.96 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=36.9
Q ss_pred EEEEEeeCCCCCCCCcCCHhHHHHhHHHHHh-CCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 38 VILFGVPGDFTPTCSLKHVPGFIEKADELQS-KGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 38 vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~-~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.++.|+ +.||++|+.- .+.+.++...++. .++ .+..+..+..........-.++
T Consensus 165 ~lv~f~-aPwc~~ck~l-~~~~~~~a~~~~~~~~v-~~~~~d~~~~~~~~~~~~v~~~ 219 (383)
T KOG0191|consen 165 WLVEFY-APWCGHCKKL-APEWEKLAKLLKSKENV-ELGKIDATVHKSLASRLEVRGY 219 (383)
T ss_pred eEEEEe-ccccHHhhhc-ChHHHHHHHHhccCcce-EEEeeccchHHHHhhhhcccCC
Confidence 455555 8899999997 8999999999974 455 6666666533444444444443
No 194
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.15 E-value=0.22 Score=32.19 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=13.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~ 54 (162)
+..+++|+. .+|||.|.+-
T Consensus 6 ~~~~Vvvys--k~~Cp~C~~a 24 (99)
T TIGR02189 6 SEKAVVIFS--RSSCCMCHVV 24 (99)
T ss_pred ccCCEEEEE--CCCCHHHHHH
Confidence 455555544 5789999984
No 195
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.05 E-value=0.34 Score=32.11 Aligned_cols=64 Identities=8% Similarity=0.003 Sum_probs=43.6
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--C--CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV--N--DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...+|+.|++. ...| ++.|+ .+-.+.. + +.+.+.+|++..+. ++.-+...++...+.++..
T Consensus 3 ~iY~~~~C~~c~ka-~~~L-------~~~gi-~~~~idi~~~~~~~~el~~~~~~~~~--~~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 3 KLYTSPSCSSCRKA-KQWL-------EEHQI-PFEERNLFKQPLTKEELKEILSLTEN--GVEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEeCCCCHHHHHH-HHHH-------HHCCC-ceEEEecCCCcchHHHHHHHHHHhcC--CHHHHHhcCcHHHHHcCCC
Confidence 45556789999995 4333 34566 5555543 3 46888999999876 6665666777788887754
No 196
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.04 E-value=1.4 Score=37.22 Aligned_cols=30 Identities=17% Similarity=-0.154 Sum_probs=21.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADE 65 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~ 65 (162)
.+++-+..|-+.+||.|+.- ...++++..+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~-~~~~~~~~~~ 504 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDV-VLAAQRIASL 504 (555)
T ss_pred CCCeEEEEEECCCCCCcHHH-HHHHHHHHHh
Confidence 35676777668999999985 6666555544
No 197
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.87 E-value=0.29 Score=33.30 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=22.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
++.+|+.|+ ..+||.|..- .+.+.++..+..
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~-~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKL-APELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEE-CCCChhHHHh-hHHHHHHHHHCC
Confidence 344455554 8899999996 898888776653
No 198
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.39 E-value=0.29 Score=31.72 Aligned_cols=64 Identities=17% Similarity=0.066 Sum_probs=40.6
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...+||.|++. ... +++.|+ .+-.+.. .+.+.+.++....+. ++.-+...++..++..+..
T Consensus 2 ~iY~~~~C~~c~ka-~~~-------L~~~~i-~~~~idi~~~~~~~~~l~~~~~~~~~--~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 2 TIYGNPNCSTSRKA-LAW-------LEEHGI-EYEFIDYLKEPPTKEELKELLAKLGL--GVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEEECCCCHHHHHH-HHH-------HHHcCC-CcEEEeeccCCCCHHHHHHHHHhcCC--CHHHHHhcCCchHHHcCCc
Confidence 35567889999995 433 334455 4444433 356888889988875 5555555666666666654
No 199
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=89.34 E-value=0.5 Score=28.70 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=27.1
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC-CHHHHHHHHHhCCCCCceEEE
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN-DPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~~~~~~~l 101 (162)
..|...+||.|..- ...|+ +.++ ..--+..+ +++..+++.+..+. ..+|.+
T Consensus 2 ~ly~~~~Cp~C~~a-~~~L~-------~~~i-~~~~~di~~~~~~~~~~~~~~g~-~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRA-KALLS-------SKGV-TFTEIRVDGDPALRDEMMQRSGR-RTVPQI 53 (79)
T ss_pred EEEecCCChhHHHH-HHHHH-------HcCC-CcEEEEecCCHHHHHHHHHHhCC-CCcCEE
Confidence 34557899999995 44444 3455 44444443 33444455544442 244543
No 200
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.18 E-value=1.5 Score=27.51 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=22.4
Q ss_pred hcCCCeEEEEEeeC---CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 32 LAAGKKVILFGVPG---DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 32 ~~~gk~vvl~f~~~---~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+.+++++||+--.. +|||.|.+- ...| ++.++ ..-.+..+
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~a-k~~L-------~~~~i-~y~~idv~ 46 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRKV-VQIL-------NQLGV-DFGTFDIL 46 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHHH-HHHH-------HHcCC-CeEEEEcC
Confidence 34667777775421 478888774 3333 33455 55555543
No 201
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=88.44 E-value=0.49 Score=31.41 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=42.0
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+|...+||.|++. ...|. +.|+ .+-.+.. .+.+.+.++++..+. ++.-+.+.++..++.++.
T Consensus 3 iY~~~~C~~c~ka-~~~L~-------~~~i-~~~~idi~~~~~~~~el~~l~~~~~~--~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKA-RRWLE-------ANGI-EYQFIDIGEDGPTREELLDILSLLED--GIDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHH-HHHHH-------HcCC-ceEEEecCCChhhHHHHHHHHHHcCC--CHHHheeCCCcchhhCCc
Confidence 4456779999995 43333 3566 5555554 245778889999886 666666677777787774
No 202
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.29 E-value=0.063 Score=35.45 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=39.0
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|...+||.|++. ...| ++.|+ .+-.+.. .+.+.+.+|.+..+. ++.-+....+...+.++..
T Consensus 3 iY~~~~C~~c~ka-~~~L-------~~~~i-~~~~idi~~~~~~~~el~~~~~~~~~--~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 3 FYEYPKCSTCRKA-KKWL-------DEHGV-DYTAIDIVEEPPSKEELKKWLEKSGL--PLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEECCCCHHHHHH-HHHH-------HHcCC-ceEEecccCCcccHHHHHHHHHHcCC--CHHHHHhcCCchHHhCCcc
Confidence 4556789999995 4333 33455 4444433 356788899998876 4444444555566666553
No 203
>PHA03050 glutaredoxin; Provisional
Probab=88.14 E-value=0.21 Score=32.84 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=13.2
Q ss_pred cCCCeEEEEEeeCCCCCCCCcC
Q 038822 33 AAGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 33 ~~gk~vvl~f~~~~~cp~C~~~ 54 (162)
.+.++++|+. .+|||+|.+-
T Consensus 10 i~~~~V~vys--~~~CPyC~~a 29 (108)
T PHA03050 10 LANNKVTIFV--KFTCPFCRNA 29 (108)
T ss_pred hccCCEEEEE--CCCChHHHHH
Confidence 3455554443 6789999984
No 204
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.08 E-value=0.072 Score=36.33 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=43.5
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+.+|...+||.|++. ... +++.|+ .+-.+.. .+.+.+.+|++..+. ++.-+....+...+.++..
T Consensus 2 i~iY~~~~C~~C~ka-~~~-------L~~~gi-~~~~idi~~~~~~~~eL~~~l~~~~~--g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKA-KAW-------LEEHDI-PFTERNIFSSPLTIDEIKQILRMTED--GTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHH-HHH-------HHHcCC-CcEEeeccCChhhHHHHHHHHHHhcC--CHHHHHhcCcHHHHhCCCC
Confidence 345667889999995 433 344565 5544443 345788999999876 5555566777777777665
Q ss_pred c
Q 038822 116 L 116 (162)
Q Consensus 116 ~ 116 (162)
.
T Consensus 71 ~ 71 (131)
T PRK01655 71 V 71 (131)
T ss_pred c
Confidence 3
No 205
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=87.97 E-value=0.34 Score=37.78 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.0
Q ss_pred CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 36 KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 36 k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
.-+.|.|+ ++|||+.+.- .|.+.+.++.++++
T Consensus 14 elvfv~Fy-AdWCrFSq~L-~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQML-KPIFEEAAAKFKQE 45 (375)
T ss_pred eEEeeeee-hhhchHHHHH-hHHHHHHHHHHHHh
Confidence 44556666 9999999997 99999999888754
No 206
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.78 E-value=1.5 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=27.0
Q ss_pred eEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 37 KVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
.-++.|| +.|.|-|..- .|-+.++..++...+.
T Consensus 146 ~WlIeFf-a~ws~~Cv~~-spvfaeLS~kyn~~~l 178 (265)
T KOG0914|consen 146 YWLIEFF-ACWSPKCVRF-SPVFAELSIKYNNNLL 178 (265)
T ss_pred EEEEEEE-eecChhhccc-ccccHHHHHHhCCCCC
Confidence 4456777 8999999997 9999999999875554
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=87.38 E-value=0.98 Score=30.10 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=15.3
Q ss_pred hhcCCCeEEEEEeeC----CCCCCCCcC
Q 038822 31 SLAAGKKVILFGVPG----DFTPTCSLK 54 (162)
Q Consensus 31 ~~~~gk~vvl~f~~~----~~cp~C~~~ 54 (162)
++.+.++|||+-- + .|||+|.+-
T Consensus 10 ~~I~~~~Vvvf~K-g~~~~p~Cpyc~~a 36 (115)
T PRK10824 10 RQIAENPILLYMK-GSPKLPSCGFSAQA 36 (115)
T ss_pred HHHhcCCEEEEEC-CCCCCCCCchHHHH
Confidence 3345666766644 4 489999984
No 208
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=87.14 E-value=2.2 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 49 PTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 49 p~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
|.=..+..|++.+...++++.|+ .++.+|.++..+...|.++.+.
T Consensus 41 ~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~l~v 85 (175)
T COG2179 41 PWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEKLGV 85 (175)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhhcCC
Confidence 33333346899999999999999 9999999999999999998876
No 209
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=86.95 E-value=1.8 Score=33.92 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=22.7
Q ss_pred EEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 39 ILFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 39 vl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
++.|| +.||..|.+- -|-.++.--++++-|.
T Consensus 47 ~VdFY-APWC~HCKkL-ePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 47 FVDFY-APWCAHCKKL-EPIWDEVGHELKDIGL 77 (468)
T ss_pred EEEee-chhhhhcccc-cchhHHhCcchhhcCC
Confidence 45565 9999999997 6777776666666555
No 210
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.85 E-value=0.6 Score=32.16 Aligned_cols=49 Identities=8% Similarity=-0.017 Sum_probs=31.4
Q ss_pred EehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH-hCCCCeEEEEEc
Q 038822 27 VSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ-SKGVDEILCISV 79 (162)
Q Consensus 27 ~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~-~~~~~~v~~is~ 79 (162)
+.+.+- ..+.+|..|+ ...||.|.+- .+.+.++.+++- ...+ .++....
T Consensus 5 ~~~G~~-~a~~~v~~f~-d~~Cp~C~~~-~~~~~~~~~~~i~~~~v-~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNP-DAPITVTEFF-DFQCPHCAKF-HEELEKLLKKYIDPGKV-KFVFRPV 54 (162)
T ss_dssp EEES-T-TTSEEEEEEE--TTSHHHHHH-HHHHHHHHHHHTTTTTE-EEEEEES
T ss_pred CeecCC-CCCeEEEEEE-CCCCHhHHHH-HHHHhhhhhhccCCCce-EEEEEEc
Confidence 445552 4555555555 7789999996 899999998882 2345 6665544
No 211
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=86.48 E-value=7.5 Score=32.72 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=61.7
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPF 83 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~ 83 (162)
+.+|..+|+..+. .+|+.++|.|++.+++++|.|-... . .....+.. ......+ .++.+..+...
T Consensus 427 ~~pG~r~p~~~~~-----~~~~~~~l~dl~g~~f~ll~~~~~~------~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 491 (547)
T PRK08132 427 PVPGAPAPDAPVR-----ADGEPGWLLDLLGGGFTLLLFGDDA------A--AAALLQAL-AAAALPV-RVVAVVPAGAA 491 (547)
T ss_pred CCCCCCCCCCccc-----CCCCceEHHHhcCCCEEEEEecCCc------h--hhhhhhhh-hccCCce-EEEEEecCccc
Confidence 4689999998876 2466788999876667777664211 0 11111111 1122334 45555443211
Q ss_pred HHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEe
Q 038822 84 VMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANV 144 (162)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~ 144 (162)
.. +...+.|.++.+.+.|++.- ...+++. ||-|-+...
T Consensus 492 ---------~~--~~~~~~d~~~~~~~~~~~~~------------~~~~LvRPDg~va~~~~ 530 (547)
T PRK08132 492 ---------QA--AAGVLEDADGLAAERYDARP------------GTVYLIRPDQHVAARWR 530 (547)
T ss_pred ---------cc--CcccccCcccHHHHHhCCCC------------CeEEEECCCceEEEEec
Confidence 11 23467899999999999851 1267777 999988764
No 212
>PRK06184 hypothetical protein; Provisional
Probab=85.69 E-value=5.1 Score=33.27 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcC-CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAA-GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~-gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
+.+|..+|+..+. ..+++++++.|++. +++++|.|-...+ ... ...++ .++.+....
T Consensus 386 ~~~G~r~p~~~~~----~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------~~~-------~~~~~-~~~~~~~~~- 443 (502)
T PRK06184 386 LRAGDRAPDAPLL----GAAGQPTRLFDLFRGPHWTLLAFGAGAA---------AIL-------ARRGL-RIHRVGDAA- 443 (502)
T ss_pred CCCcCCCCCchhc----cCCCceeeHHHhhCCCcEEEEEecCCch---------hhh-------hhcCc-eEEEecccC-
Confidence 5689999999887 55677888877765 5777776532111 111 12356 565554321
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEE
Q 038822 83 FVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAAN 143 (162)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~ 143 (162)
....+.|+++.+.+.|++.. ...+++. ||-|-+..
T Consensus 444 --------------~~~~~~d~~g~~~~~~~~~~------------~~~~lvRPDg~v~~~~ 479 (502)
T PRK06184 444 --------------EGGDLVDDAGHFRDAYGLTG------------GTLVLVRPDGYVGLIA 479 (502)
T ss_pred --------------CCCceeCCCccHHHHhcCCC------------CcEEEECCCcceEEEe
Confidence 12247899999999999861 1267777 99888764
No 213
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=85.35 E-value=1.1 Score=26.55 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=26.9
Q ss_pred eeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 43 VPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 43 ~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
|...+||.|++- .-.+. .++..+ +++-+.... ...+|.+..+. ...|++.+.+
T Consensus 4 y~~~~~p~~~rv-~~~L~-----~~gl~~-e~~~v~~~~--~~~~~~~~np~-~~vP~L~~~~ 56 (71)
T cd03060 4 YSFRRCPYAMRA-RMALL-----LAGITV-ELREVELKN--KPAEMLAASPK-GTVPVLVLGN 56 (71)
T ss_pred EecCCCcHHHHH-HHHHH-----HcCCCc-EEEEeCCCC--CCHHHHHHCCC-CCCCEEEECC
Confidence 445689999885 22222 222334 444444322 22345554442 4678877653
No 214
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=84.82 E-value=3.6 Score=28.00 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=32.1
Q ss_pred eEEEEcCCchHH---HHcCCccccccCCCCccceeEEEEEcCCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 98 VKFLADGSAKYT---HALGLELDLSEKGLGTQSRRFALLVDDLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 98 ~~~l~D~~~~~~---~~~gv~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
..++...|.+.. |.|=.. -.|++|++-+++||++++..-- .++..+++++|.+.
T Consensus 71 vTVFAGqDkEAt~~aR~yf~~--------~pPSSPS~ALfKdGelvh~ieR--h~IEGr~a~~Ia~~ 127 (136)
T PF06491_consen 71 VTVFAGQDKEATAKAREYFEP--------YPPSSPSIALFKDGELVHFIER--HHIEGRPAEEIAEN 127 (136)
T ss_dssp EEEETTTSHHHHHHHHHTSTT--------S---SSEEEEEETTEEEEEE-G--GGTTTS-HHHHHHH
T ss_pred EEeccCCCHHHHHHHHHhcCC--------CCCCCchheeeeCCEEEEEeeh--hhcCCCCHHHHHHH
Confidence 567777775543 333222 2467788999999999987752 23334777777654
No 215
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.45 E-value=0.16 Score=34.59 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=42.2
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE--c--CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS--V--NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is--~--d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...+|+.|++. ... +++.|+ .+-.+. . -+.+.+++|++..+. ++.-+....+..++.++..
T Consensus 3 ~iY~~~~C~~crkA-~~~-------L~~~gi-~~~~~di~~~~~s~~el~~~l~~~~~--g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 3 VLYTTASCASCRKA-KAW-------LEENQI-DYTEKNIVSNSMTVDELKSILRLTEE--GATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEeCCCChHHHHH-HHH-------HHHcCC-CeEEEEeeCCcCCHHHHHHHHHHcCC--CHHHHHhcCcHHHHhCCCC
Confidence 45557789999995 433 344455 444443 2 367889999999766 5545556677777877765
No 216
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=84.36 E-value=7.3 Score=32.72 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=63.8
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPF 83 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~ 83 (162)
+.+|+.+|+..+. +.++....+.++..+++++|.|- . -|... +.. .........+. .++.+......
T Consensus 411 ~~~G~~~p~~~~~----~~~~~~~~~d~~~~~~~~ll~~~--~-~~~~~---~~~--~~~~~~~~~~~-~~~~~~~~~~~ 477 (538)
T PRK06183 411 SPVGTLFPQPRVE----LGGGDRGLLDDVLGPGFAVLGWG--C-DPLAG---LSD--EQRARWRALGA-RFVQVVPAVQA 477 (538)
T ss_pred CCcccCcCCCeeE----cCCCCcccchhccCCceEEEEec--C-Cchhc---CCH--HHHHHHHHcCC-eEEEEeccccc
Confidence 4589999999887 45554555677655667777662 1 12222 211 11122445677 67766543211
Q ss_pred HHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEE
Q 038822 84 VMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAAN 143 (162)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~ 143 (162)
. . - +...+.|.++.+.+.|+.. +- ..+++. |+-|-...
T Consensus 478 ~-------~-~--~~~~~~d~~g~~~~~~~~~--------~~----~~~lvRPD~~v~~~~ 516 (538)
T PRK06183 478 H-------T-A--QDDHDSDVDGALRAWLARH--------GA----SAVLLRPDRYVAAAA 516 (538)
T ss_pred c-------c-C--CCceeecCCchHHHHHHhC--------CC----EEEEECCCEEEEEee
Confidence 1 0 1 4568899999999999975 21 267777 99887553
No 217
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=84.14 E-value=1.3 Score=30.22 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=42.8
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...+|+.|++- .. .+++.|+ .+-.+.. -+.+.+.+|++..+. ++.-+....+...+.++..
T Consensus 3 ~iY~~~~C~~crkA-~~-------~L~~~~i-~~~~~d~~~~~~s~~eL~~~l~~~~~--~~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 3 KIYTISSCTSCKKA-KT-------WLNAHQL-SYKEQNLGKEPLTKEEILAILTKTEN--GIESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEEeCCCCHHHHHH-HH-------HHHHcCC-CeEEEECCCCCCCHHHHHHHHHHhCC--CHHHhhccCcHHHHhCCcc
Confidence 34556789999984 43 3344565 5544543 357889999999886 5655556777777777754
No 218
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=83.66 E-value=1.1 Score=31.86 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=11.5
Q ss_pred CCCeEEEEEeeCCCCCCCCc
Q 038822 34 AGKKVILFGVPGDFTPTCSL 53 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~ 53 (162)
.+|+++|.+. .+||..|..
T Consensus 36 e~KpIfl~ig-~~~C~wChv 54 (163)
T PF03190_consen 36 ENKPIFLSIG-YSWCHWCHV 54 (163)
T ss_dssp HT--EEEEEE--TT-HHHHH
T ss_pred cCCcEEEEEE-ecCCcchhh
Confidence 4677766666 789999987
No 219
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=82.43 E-value=2 Score=30.02 Aligned_cols=32 Identities=19% Similarity=0.110 Sum_probs=24.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
.++..|+.|+ ...||+|..- -+.+.++.+++.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~-~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNF-EPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhh-hHHHHHHHHhCC
Confidence 3555566666 6779999996 788988888773
No 220
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=2.1 Score=26.31 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=39.0
Q ss_pred CCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCC
Q 038822 45 GDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLG 124 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~ 124 (162)
+..||.|..- +..|.++.=. . +.+-|. .+...+++|++-..- -| .-.-.+..|-. |
T Consensus 9 sn~Cpdca~a-~eyl~rl~v~-----y-d~VeIt-~Sm~NlKrFl~lRDs---~~-----~Fd~vk~~gyi--------G 64 (85)
T COG4545 9 SNLCPDCAPA-VEYLERLNVD-----Y-DFVEIT-ESMANLKRFLHLRDS---RP-----EFDEVKSNGYI--------G 64 (85)
T ss_pred cccCcchHHH-HHHHHHcCCC-----c-eeeehh-hhhhhHHHHHhhhcc---ch-----hHHhhhhcCcc--------c
Confidence 6789999885 6666655422 2 222222 345667777764432 11 11122333332 6
Q ss_pred ccceeEEEEEcCCeEEEE
Q 038822 125 TQSRRFALLVDDLKVKAA 142 (162)
Q Consensus 125 ~~~~~~~~ii~~g~i~~~ 142 (162)
+| .++.+||+|+.-
T Consensus 65 IP----all~~d~~vVl~ 78 (85)
T COG4545 65 IP----ALLTDDGKVVLG 78 (85)
T ss_pred ce----EEEeCCCcEEEe
Confidence 77 788888888763
No 221
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=79.39 E-value=6.6 Score=23.58 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-HHHHHHHHHhCCCCCceEEEEcC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-PFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
.|...+||.|++- .-.| +++|+ ..-.+..+. .....++.+..+. ..+|++.|.
T Consensus 4 Ly~~~~sp~~~kv-~~~L-------~~~gi-~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~ 57 (77)
T cd03041 4 LYEFEGSPFCRLV-REVL-------TELEL-DVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDP 57 (77)
T ss_pred EecCCCCchHHHH-HHHH-------HHcCC-cEEEEECCCChHHHHHHHHhCCC-CcccEEEeC
Confidence 4445679999985 2222 23444 332233332 2233456665552 467887764
No 222
>PTZ00062 glutaredoxin; Provisional
Probab=79.19 E-value=7.1 Score=28.72 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=26.5
Q ss_pred hhhhcCCCeEEEEEeeC---CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHH
Q 038822 29 VHSLAAGKKVILFGVPG---DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89 (162)
Q Consensus 29 l~~~~~gk~vvl~f~~~---~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~ 89 (162)
+..+.+.++++|+--.. ++||.|++- . + -+++.++ ....+..+..++.++.+
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~-k----~---~L~~~~i-~y~~~DI~~d~~~~~~l 160 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAV-V----N---MLNSSGV-KYETYNIFEDPDLREEL 160 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHH-H----H---HHHHcCC-CEEEEEcCCCHHHHHHH
Confidence 44444567777777632 356666553 2 2 2334566 55555554333343333
No 223
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=78.47 E-value=3.8 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.7
Q ss_pred eEEEEcCCchHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCC
Q 038822 98 VKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGG 148 (162)
Q Consensus 98 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~ 148 (162)
-.++.|..+..-.+|++.-+ . .+.++.| +|+|.++.-+.-.
T Consensus 127 Sq~vlD~~gvak~AWqL~e~------~----SaivVlDk~G~VkfvkeGaLt 168 (184)
T COG3054 127 SQFVLDSNGVAKNAWQLKEE------S----SAVVVLDKDGRVKFVKEGALT 168 (184)
T ss_pred eeeEEccchhhhhhhccccc------c----ceEEEEcCCCcEEEEecCCcc
Confidence 35889999955459998732 1 2377777 9999999987533
No 224
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=78.42 E-value=1.1 Score=27.61 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=35.7
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
|.+|....|+.|..- ...|.++.. +.++ .+-.|.+++.+ ++.++++. ..|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a-~~~L~~~~~---~~~~-~l~~vDI~~d~---~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA-KEILEEVAA---EFPF-ELEEVDIDEDP---ELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHH-HHHHHHCCT---TSTC-EEEEEETTTTH---HHHHHSCT--STSEEEETT
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHh---hcCc-eEEEEECCCCH---HHHHHhcC--CCCEEEEcC
Confidence 455666779999884 555555432 3457 78888887433 37788887 677665444
No 225
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=78.30 E-value=7.8 Score=29.73 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=52.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+.+|||.|| -..++.|..- -..|..++.++.. + .++-|..... + +...|..
T Consensus 146 ~~~VVVHiY-~~~~~~C~~m-n~~L~~LA~kyp~--v-KFvkI~a~~~-----------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIM-NSCLECLARKYPE--V-KFVKIRASKC-----------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHH-HHHHHHHHHH-TT--S-EEEEEEECGC-----------------------C-TTTTS-T
T ss_pred CcEEEEEEE-eCCCchHHHH-HHHHHHHHHhCCc--e-EEEEEehhcc-----------------------C-cccCCcc
Confidence 446777777 5569999995 7889999988864 5 6666554310 1 2344554
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEeec----CCcceeCCHHHHHhc
Q 038822 115 ELDLSEKGLGTQSRRFALLVDDLKVKAANVES----GGDFTVSSADDILKS 161 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ii~~g~i~~~~~~~----~~~~~~~~~~~il~~ 161 (162)
. +.|+ .++..+|.++..+++- +..+...+++.+|..
T Consensus 197 ~--------~LPt---llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 197 K--------NLPT---LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp T--------C-SE---EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred c--------CCCE---EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 4 4563 5555699999988862 344555567777653
No 226
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=75.74 E-value=4.2 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=20.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
|| +.++|....|||+|-.+ .=.|-....+|.
T Consensus 58 Gk-~~v~~igw~gCP~~A~~-sW~L~~ALsrfG 88 (249)
T PF06053_consen 58 GK-PEVIFIGWEGCPYCAAE-SWALYIALSRFG 88 (249)
T ss_pred Ce-eEEEEEecccCccchhh-HHHHHHHHHhcC
Confidence 55 66667778999999998 444444444553
No 227
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=74.17 E-value=3.4 Score=33.73 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=22.2
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHH
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWA 89 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~ 89 (162)
.|..+|||.|.+- -.. +++.|+ ..-.|..+......++.
T Consensus 6 vys~~~Cp~C~~a-K~~-------L~~~gi-~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 6 IYTKTNCPFCDLA-KSW-------FGANDI-PFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEeCCCCHHHHHH-HHH-------HHHCCC-CeEEEECCCChhHHHHH
Confidence 4447899999984 322 344566 65566665333333333
No 228
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.07 E-value=16 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=47.4
Q ss_pred eEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE-cCCHHHHHHHHHhCCCCC----ceEEEEcCCchHHHH
Q 038822 37 KVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS-VNDPFVMKAWAKTFPKNK----SVKFLADGSAKYTHA 111 (162)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is-~d~~~~~~~~~~~~~~~~----~~~~l~D~~~~~~~~ 111 (162)
..+.+|.- ..|+.|..- +..+.. ....+ .|+.|. ..+.+.+++|...++..+ .=.|-...+.--...
T Consensus 110 ~rlalFvk-d~C~~C~~~-~~~l~a-----~~~~~-Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~ 181 (200)
T TIGR03759 110 GRLALFVK-DDCVACDAR-VQRLLA-----DNAPL-DLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQ 181 (200)
T ss_pred CeEEEEeC-CCChHHHHH-HHHHhc-----CCCce-eEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHH
Confidence 34566664 789999995 776643 23456 777775 567899999999999732 123444455555667
Q ss_pred cCCc
Q 038822 112 LGLE 115 (162)
Q Consensus 112 ~gv~ 115 (162)
||+.
T Consensus 182 lg~~ 185 (200)
T TIGR03759 182 LGLQ 185 (200)
T ss_pred ccCC
Confidence 7764
No 229
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=72.91 E-value=4.3 Score=23.66 Aligned_cols=13 Identities=8% Similarity=-0.182 Sum_probs=9.4
Q ss_pred EeeCCCCCCCCcC
Q 038822 42 GVPGDFTPTCSLK 54 (162)
Q Consensus 42 f~~~~~cp~C~~~ 54 (162)
+|...+||.|++-
T Consensus 3 Ly~~~~s~~~~~~ 15 (74)
T cd03051 3 LYDSPTAPNPRRV 15 (74)
T ss_pred EEeCCCCcchHHH
Confidence 4445679999885
No 230
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=4.8 Score=29.99 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHH-HhHHHHHhCCCCeEEEEEcCCHHHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFI-EKADELQSKGVDEILCISVNDPFVMK 86 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~-~~~~~~~~~~~~~v~~is~d~~~~~~ 86 (162)
+++..++.|| +.||.+|.. +.+.- .+.+.+ .++ +++-+..+......
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q--~~~v~~~~~~~~--~~~-~~~k~~a~~~~eis 63 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQ--MDQVFDHLAEYF--KNA-QFLKLEAEEFPEIS 63 (227)
T ss_pred ccchhhhhhh-hhhhhhhhh--HHHHHHHHHHhh--hhh-eeeeehhhhhhHHH
Confidence 6778888888 899999998 55544 555555 566 67766665444433
No 231
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=72.68 E-value=18 Score=31.23 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhhc--CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC-----------
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSLA--AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK----------- 69 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~----------- 69 (162)
.+.+|..+|++.+.- -.+++++.|.+.+ .|+|.||.|-.. .....+ ...+..+.+.+.+.
T Consensus 462 ~~~~G~r~~~~~v~~---~~d~~~~~l~~~~~~~g~~~l~~f~~~---~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~ 534 (634)
T PRK08294 462 GFPIGKRFHSAPVIR---LADAKPVHLGHAATADGRWRIYAFADA---ADPAGP-GSALDALCEFLAESPDSPLRRFTPS 534 (634)
T ss_pred CCCCceeCCCCceee---ccCCCchhHhhhcccCCCEEEEEEcCC---CCcchh-HHHHHHHHHHHhhCccchHhhcCCC
Confidence 478999999999872 2467788776554 588888887632 233343 45555555555211
Q ss_pred C------CCeEEEEEcCC---------HHHHHHHHHhCCCCCce-EEEEc--CCchHHHHcCCccccccCCCCccceeEE
Q 038822 70 G------VDEILCISVND---------PFVMKAWAKTFPKNKSV-KFLAD--GSAKYTHALGLELDLSEKGLGTQSRRFA 131 (162)
Q Consensus 70 ~------~~~v~~is~d~---------~~~~~~~~~~~~~~~~~-~~l~D--~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 131 (162)
+ + .++.|.... |+.+..+....++. .+ .++.| +....++.||+.- ..-..
T Consensus 535 ~~~~~~~~-~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~----------~~g~~ 602 (634)
T PRK08294 535 GADIDAVI-DVRAIFQQPHRELDLEDVPALLLPRKGRFGLT-DYEKVFCADLSGADIFDLRGIDR----------DRGAV 602 (634)
T ss_pred CCCCCcEE-EEEEEecCCCCccchhhCcHhhCCcccccCcc-chhheecCCCchhhHHHhhCCCC----------CceeE
Confidence 1 3 455555432 12222222333320 11 24555 2356889999752 12247
Q ss_pred EEEc-CCeEEEEEe
Q 038822 132 LLVD-DLKVKAANV 144 (162)
Q Consensus 132 ~ii~-~g~i~~~~~ 144 (162)
+|+. ||-|-++..
T Consensus 603 vvvRPD~~v~~~~~ 616 (634)
T PRK08294 603 VVVRPDQYVANVLP 616 (634)
T ss_pred EEECCCCceEEEec
Confidence 7777 998777654
No 232
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=71.52 E-value=5.8 Score=25.78 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=36.6
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...+|+.|++. ...| ++.|+ .+-.+.. -+.+.+++|+++.|. .-+....+..++.++..
T Consensus 2 ~iy~~~~C~~crka-~~~L-------~~~~i-~~~~~di~~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKA-RKWL-------EARGV-AYTFHDYRKDGLDAATLERWLAKVGW----ETLLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHH-HHHH-------HHcCC-CeEEEecccCCCCHHHHHHHHHHhCh----HHHHccCchHHHhCChh
Confidence 35557789999995 4333 33455 4444432 367889999998763 12223445555655543
No 233
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=69.21 E-value=5 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.478 Sum_probs=19.4
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEE
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEIL 75 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~ 75 (162)
|.-|.-||.|..+ +-.+-+++.++ .++
T Consensus 7 FIAGA~CP~C~~~------Dtl~mW~En~v-e~v 33 (66)
T COG3529 7 FIAGAVCPACQAQ------DTLAMWRENNV-EIV 33 (66)
T ss_pred hhccCCCcccchh------hHHHHHHhcCC-ceE
Confidence 5567789999996 45556667777 655
No 234
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=69.08 E-value=25 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.4
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+.+.++..+++++++ .++.+|..+.......++.+++
T Consensus 79 ~~~~~~~L~~l~~~~~-~~~i~Sn~~~~~~~~~l~~~~~ 116 (176)
T PF13419_consen 79 YPGVRELLERLKAKGI-PLVIVSNGSRERIERVLERLGL 116 (176)
T ss_dssp STTHHHHHHHHHHTTS-EEEEEESSEHHHHHHHHHHTTH
T ss_pred hhhhhhhhhhcccccc-eeEEeecCCccccccccccccc
Confidence 4567778888888899 9999999988888899999987
No 235
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.75 E-value=3.9 Score=23.02 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=26.5
Q ss_pred eeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCc
Q 038822 43 VPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSA 106 (162)
Q Consensus 43 ~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
|...+||.|.+- ...+... +-.+ ++.-+..+..... .+.+..+. ..+|++.+.+.
T Consensus 4 y~~~~~~~~~~~-~~~l~~~-----~i~~-~~~~~~~~~~~~~-~~~~~~~~-~~~P~l~~~~~ 58 (71)
T cd00570 4 YYFPGSPRSLRV-RLALEEK-----GLPY-ELVPVDLGEGEQE-EFLALNPL-GKVPVLEDGGL 58 (71)
T ss_pred EeCCCCccHHHH-HHHHHHc-----CCCc-EEEEeCCCCCCCH-HHHhcCCC-CCCCEEEECCE
Confidence 334569999884 3222222 2234 4444544322111 34444442 36777776643
No 236
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.23 E-value=3.3 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=22.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHH---HHhHHHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGF---IEKADELQ 67 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l---~~~~~~~~ 67 (162)
.|++.|+.|| ...||+|..- -+.+ ..+.+.+.
T Consensus 36 ~~~~~VvEff-dy~CphC~~~-~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQF-EEVYHVSDNVKKKLP 70 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHh-cccccchHHHHHhCC
Confidence 5788788888 5669999994 4544 45555554
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=67.96 E-value=19 Score=29.79 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 22 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
.+++.++|+++ +|...|++.. |+ =..|... +...+...+++.++++ -|+-|..+
T Consensus 284 ~~~~~v~l~~L-Rg~~RvvIvA-G~-~e~v~~a-l~~ae~~r~~L~~r~V-lvVPv~~~ 337 (453)
T PLN03098 284 STNRIVELVQL-RDITRPVILA-GT-KESVTLA-MQKAERYRTELLKRGV-LLIPVVWG 337 (453)
T ss_pred cCCCEEeHHHh-cCcceEEEEE-CC-HHHHHHH-HHHhHHHHHHHHHcCc-EEEEEecC
Confidence 35679999997 8876655554 55 3566665 8888999999999998 77777654
No 238
>PRK05370 argininosuccinate synthase; Validated
Probab=65.58 E-value=12 Score=30.94 Aligned_cols=70 Identities=19% Similarity=0.071 Sum_probs=47.9
Q ss_pred hhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-------HHHHHHHHHhCCCCCceEEE
Q 038822 29 VHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-------PFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 29 l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-------~~~~~~~~~~~~~~~~~~~l 101 (162)
|+++-+|++|||.+-.|-.+.+|..+ + +++++ +|+++..|. .+..++-....|. .=.++
T Consensus 5 ~~~l~~~~KVvLAYSGGLDTSv~l~w-L----------~e~~~-eVia~~aDvGQ~~~ed~~~i~~kA~~~GA--~~~~v 70 (447)
T PRK05370 5 LKHLPVGQRVGIAFSGGLDTSAALLW-M----------RQKGA-VPYAYTANLGQPDEDDYDAIPRRAMEYGA--ENARL 70 (447)
T ss_pred hhhCCCCCEEEEEecCCchHHHHHHH-H----------HhcCC-eEEEEEEECCCCCccchHHHHHHHHHhCC--CEEEE
Confidence 56654788888888877778888774 3 33377 888876542 2355555566665 45678
Q ss_pred EcCCchHHHHc
Q 038822 102 ADGSAKYTHAL 112 (162)
Q Consensus 102 ~D~~~~~~~~~ 112 (162)
.|-..++++.|
T Consensus 71 iDlr~eF~e~~ 81 (447)
T PRK05370 71 IDCRAQLVAEG 81 (447)
T ss_pred eccHHHHHHHH
Confidence 88888888777
No 239
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=64.23 E-value=3.8 Score=26.81 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=13.0
Q ss_pred cCCCeEEEEEeeCCCCCCCCc
Q 038822 33 AAGKKVILFGVPGDFTPTCSL 53 (162)
Q Consensus 33 ~~gk~vvl~f~~~~~cp~C~~ 53 (162)
...+++|++- .+|||.|.+
T Consensus 11 i~~~~VVifS--Ks~C~~c~~ 29 (104)
T KOG1752|consen 11 ISENPVVIFS--KSSCPYCHR 29 (104)
T ss_pred hhcCCEEEEE--CCcCchHHH
Confidence 3456555443 588999988
No 240
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=63.97 E-value=4.6 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=26.0
Q ss_pred eeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH-HHHHHHHhCCCCCceEEEEcCC
Q 038822 43 VPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPF-VMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 43 ~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~-~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
|....||.|++- .-.+.. .+..+ ++.-+.....+ ....|.+.... ..+|++.|.+
T Consensus 4 y~~~~~~~~~~v-~~~l~~-----~gi~~-e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~ 59 (74)
T cd03045 4 YYLPGSPPCRAV-LLTAKA-----LGLEL-NLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNG 59 (74)
T ss_pred EeCCCCCcHHHH-HHHHHH-----cCCCC-EEEEecCccCCcCCHHHHhhCcC-CCCCEEEECC
Confidence 434568888774 222221 12233 44444432222 22445555443 4677777654
No 241
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=62.42 E-value=5.5 Score=25.33 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred CCCCCCcCCHhHHHHhHHHHHhCCCC-eEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCch
Q 038822 47 FTPTCSLKHVPGFIEKADELQSKGVD-EILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAK 107 (162)
Q Consensus 47 ~cp~C~~~~~~~l~~~~~~~~~~~~~-~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~ 107 (162)
+||+|++. .-.| .++|+. +++-|..+. .-..|++-+.. ..+|++.|.+..
T Consensus 21 ~cpf~~rv-rl~L-------~eKgi~ye~~~vd~~~--~p~~~~~~nP~-g~vPvL~~~~~~ 71 (91)
T cd03061 21 NCPFCQRL-FMVL-------WLKGVVFNVTTVDMKR--KPEDLKDLAPG-TQPPFLLYNGEV 71 (91)
T ss_pred CChhHHHH-HHHH-------HHCCCceEEEEeCCCC--CCHHHHHhCCC-CCCCEEEECCEE
Confidence 48999885 3332 234541 444454433 22335555553 578888886643
No 242
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=60.84 E-value=19 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=28.9
Q ss_pred EEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHH
Q 038822 38 VILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKA 87 (162)
Q Consensus 38 vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 87 (162)
.=+.+|.+..|.-|..+ +. .++.+|+ +|=.+..++.+.+++
T Consensus 26 ~~~~vyksPnCGCC~~w-~~-------~mk~~Gf-~Vk~~~~~d~~alK~ 66 (149)
T COG3019 26 TEMVVYKSPNCGCCDEW-AQ-------HMKANGF-EVKVVETDDFLALKR 66 (149)
T ss_pred eeEEEEeCCCCccHHHH-HH-------HHHhCCc-EEEEeecCcHHHHHH
Confidence 33556667889999986 53 3446788 787788887776665
No 243
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=60.31 E-value=34 Score=22.44 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=32.7
Q ss_pred ceeEehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc
Q 038822 24 LQQVSVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV 79 (162)
Q Consensus 24 g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~ 79 (162)
.+.-.+++| .+ ..-++-|+. |..|.. ..+....+++.+.++ +++.+|+
T Consensus 25 ~r~g~F~~y-~~~~~elvgf~~---CgGCpg---~~~~~~~~~l~~~~~-d~IHlss 73 (107)
T PF08821_consen 25 ERKGAFARY-DDEDVELVGFFT---CGGCPG---RKLVRRIKKLKKNGA-DVIHLSS 73 (107)
T ss_pred hccCccccC-CCCCeEEEEEee---CCCCCh---hHHHHHHHHHHHCCC-CEEEEcC
Confidence 344556776 44 455666663 888875 367777888888899 8888865
No 244
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=59.29 E-value=31 Score=22.03 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.6
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+.+.+..+++++.|+ .++.+|.......+.+++..++
T Consensus 26 ~~~~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGI-KLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCchHHHHHHHHHHcCC
Confidence 5677788888888898 8999999888899999998876
No 245
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=58.61 E-value=50 Score=21.71 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=30.3
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCC--------HHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVND--------PFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~--------~~~~~~~~~~~~~ 94 (162)
.+...+..+.++++|+ .+..+|... .+..+++++.+++
T Consensus 27 ~~~v~~~l~~L~~~g~-~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l 72 (132)
T TIGR01662 27 YPEVPDALAELKEAGY-KVVIVTNQSGIGRGKFSSGRVARRLEELGV 72 (132)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEECCccccccHHHHHHHHHHHHHCCC
Confidence 3566778888888898 888888876 6678888898887
No 246
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.00 E-value=13 Score=21.60 Aligned_cols=13 Identities=8% Similarity=-0.289 Sum_probs=9.0
Q ss_pred EeeCCCCCCCCcC
Q 038822 42 GVPGDFTPTCSLK 54 (162)
Q Consensus 42 f~~~~~cp~C~~~ 54 (162)
.|...+||.|.+-
T Consensus 3 ly~~~~~~~~~~v 15 (73)
T cd03059 3 LYSGPDDVYSHRV 15 (73)
T ss_pred EEECCCChhHHHH
Confidence 3445679999884
No 247
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=57.55 E-value=8.4 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=42.1
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeE--EEEEc--CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEI--LCISV--NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v--~~is~--d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
.+|...-|..|++- . +.+++.|+ +. +-+.. -+.+.+.+|++..+. ++.-+....+..+++++..
T Consensus 4 tiy~~p~C~t~rka-~-------~~L~~~gi-~~~~~~y~~~~~s~~eL~~~l~~~g~--~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 4 TIYGNPNCSTCRKA-L-------AWLEEHGI-EYTFIDYLKTPPSREELKKILSKLGD--GVEELINTRGTTYRELNLD 71 (117)
T ss_pred EEEeCCCChHHHHH-H-------HHHHHcCC-CcEEEEeecCCCCHHHHHHHHHHcCc--cHHHHHHhccchHHHcCCc
Confidence 44444457777664 3 33444555 44 43443 367899999999997 6777777788888888843
No 248
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=56.74 E-value=12 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 129 RFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 129 ~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
-+.+++| .|+||+.-.|+..+ +++++++.
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp---~Eve~L~~ 278 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTATP---EEVEQLLS 278 (287)
T ss_pred EEEEEEccCceEEEeecCCCCH---HHHHHHHH
Confidence 4578888 99999999998766 66666653
No 249
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=56.05 E-value=29 Score=20.65 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHH-hHHHHH
Q 038822 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIE-KADELQ 67 (162)
Q Consensus 22 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~-~~~~~~ 67 (162)
.+|..+.|-++ ++..+.+.+- |. |-.|... ...+.. ..+.++
T Consensus 14 ~dGGdv~lv~v-~~~~V~V~l~-Ga-C~gC~~s-~~Tl~~~Ie~~L~ 56 (68)
T PF01106_consen 14 SDGGDVELVDV-DDGVVYVRLT-GA-CSGCPSS-DMTLKQGIEQALR 56 (68)
T ss_dssp HTTEEEEEEEE-ETTEEEEEEE-SS-CCSSCCH-HHHHHHHHHHHHH
T ss_pred hcCCcEEEEEe-cCCEEEEEEE-eC-CCCCCCH-HHHHHHHHHHHHH
Confidence 47899999997 6775555554 65 9999996 677743 333344
No 250
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.36 E-value=14 Score=27.42 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=28.9
Q ss_pred CCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 22 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
.++....+.+. .++..++.|+ ..-||.|... ++.+.+.+....+.
T Consensus 72 ~~~~~~~~G~~-~~~v~v~~f~-d~~Cp~C~~~-~~~l~~~~i~~~~~ 116 (244)
T COG1651 72 PDGKDVVLGNP-YAPVTVVEFF-DYTCPYCKEA-FPELKKKYIDDGKV 116 (244)
T ss_pred CCCCcccccCC-CCCceEEEEe-cCcCccHHHH-HHHHHHHhhhcCCC
Confidence 44555555553 3455555555 6779999887 89998866555443
No 251
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=54.80 E-value=22 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.2
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
-++..|||.|-. ...++.+.+.+.+.
T Consensus 15 ~~~~~~CpGCg~--~~i~~~i~~al~~l 40 (301)
T PRK05778 15 GLPTTWCPGCGN--FGILNAIIQALAEL 40 (301)
T ss_pred CCCCCCCCCCCC--hHHHHHHHHHHHHh
Confidence 356789999997 57888888888764
No 252
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=54.15 E-value=1.8 Score=32.47 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=27.2
Q ss_pred hhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 29 VHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 29 l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
+.+++.|.|.+. |+ +.|||.|.-. .+.+...+.--.+.++
T Consensus 34 w~~~l~gewmi~-~~-ap~~psc~~~-~~~~~~~a~~s~dL~v 73 (248)
T KOG0913|consen 34 WKELLTGEWMIE-FG-APWCPSCSDL-IPHLENFATVSLDLGV 73 (248)
T ss_pred hhhhhchHHHHH-hc-CCCCccccch-HHHHhccCCccCCCce
Confidence 344456776644 44 7899999996 8888877665555554
No 253
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=52.53 E-value=26 Score=20.27 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=7.8
Q ss_pred CCCCCCCCcC
Q 038822 45 GDFTPTCSLK 54 (162)
Q Consensus 45 ~~~cp~C~~~ 54 (162)
..+||.|.+-
T Consensus 6 ~~~~p~~~rv 15 (71)
T cd03037 6 YEHCPFCVKA 15 (71)
T ss_pred cCCCcHhHHH
Confidence 4579999984
No 254
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.81 E-value=36 Score=25.73 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.5
Q ss_pred HhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchH
Q 038822 61 EKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKY 108 (162)
Q Consensus 61 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (162)
..+.++++.|+ .|+..|.-+..++..+.+..+. .+.|+++...+.+
T Consensus 30 pv~~el~d~G~-~Vi~~SSKT~aE~~~l~~~l~v-~~~p~iaEnG~aI 75 (274)
T COG3769 30 PVLLELKDAGV-PVILCSSKTRAEMLYLQKSLGV-QGLPLIAENGAAI 75 (274)
T ss_pred hHHHHHHHcCC-eEEEeccchHHHHHHHHHhcCC-CCCceeecCCceE
Confidence 45566778899 9999999999999999999997 2388887655443
No 255
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=6.6 Score=28.39 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCch-HHHHcCC
Q 038822 46 DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAK-YTHALGL 114 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~-~~~~~gv 114 (162)
++||+|.+- ++.-.+++-.+ ++..+-.|+.+...+..-+ ...|++.-.+++ +.+.+.+
T Consensus 7 dHCPfcvra------rmi~Gl~nipv-e~~vL~nDDe~Tp~rmiG~----KqVPiL~Kedg~~m~ESlDI 65 (215)
T COG2999 7 DHCPFCVRA------RMIFGLKNIPV-ELHVLLNDDEETPIRMIGQ----KQVPILQKEDGRAMPESLDI 65 (215)
T ss_pred ccChHHHHH------HHHhhccCCCh-hhheeccCcccChhhhhcc----cccceEEccccccchhhhHH
Confidence 679999994 44444444445 5666667766655555432 256666655543 3344443
No 256
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=50.04 E-value=8.9 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=16.0
Q ss_pred eEEEEEcCCHHH-HHHHHHhCCCCCceEEEEcCC
Q 038822 73 EILCISVNDPFV-MKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 73 ~v~~is~d~~~~-~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+++.+.....+. ...|.+-+. ...+|++.|.+
T Consensus 27 e~~~v~~~~~~~~~~~~~~inP-~g~vP~L~~~g 59 (73)
T cd03052 27 EEYDVSLPLSEHNEPWFMRLNP-TGEVPVLIHGD 59 (73)
T ss_pred EEEEecCCcCccCCHHHHHhCc-CCCCCEEEECC
Confidence 555554432222 223555444 34678887754
No 257
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.96 E-value=16 Score=25.12 Aligned_cols=40 Identities=5% Similarity=0.146 Sum_probs=20.6
Q ss_pred eCCCCCCCCcC------CHhHHHHhHHHHHhCCCCeEEEEEcCCHHHH
Q 038822 44 PGDFTPTCSLK------HVPGFIEKADELQSKGVDEILCISVNDPFVM 85 (162)
Q Consensus 44 ~~~~cp~C~~~------~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 85 (162)
.++-|.+|..- +-.++.++.+++...++ ++.+...+++..
T Consensus 36 s~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enl--vVvlG~aeaE~a 81 (150)
T PF04723_consen 36 SSTECFVCTAAGAMDLENQQRVKDLAEKYGAENL--VVVLGAAEAEAA 81 (150)
T ss_pred EeeeEEEecccccccHHHHHHHHHHHHhcCCccE--EEEecCCChhhh
Confidence 36778888862 12345555666554444 333333334433
No 258
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=48.98 E-value=21 Score=27.69 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=20.1
Q ss_pred eeCCCCCCCCcCCHhHHHHhHHHHHhCC
Q 038822 43 VPGDFTPTCSLKHVPGFIEKADELQSKG 70 (162)
Q Consensus 43 ~~~~~cp~C~~~~~~~l~~~~~~~~~~~ 70 (162)
++..|||.|-. -.-+..+.+.+.+.+
T Consensus 6 ~~~~~CpGCg~--~~i~~~~~~a~~~l~ 31 (280)
T PRK11869 6 YDIAWCPGCGN--FGIRNALMKALSELN 31 (280)
T ss_pred CCCCCCcCCCC--HHHHHHHHHHHHHcC
Confidence 56789999997 477777777776654
No 259
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.84 E-value=27 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.2
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHH
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
|.||.-..||.|-.- .+.+.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~-~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGF-EPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCc-hHHHHHHHHHhC
Confidence 445557889999997 999999999883
No 260
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=48.54 E-value=34 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=21.2
Q ss_pred hHHHHcCCccccccCCCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHh
Q 038822 107 KYTHALGLELDLSEKGLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILK 160 (162)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~ 160 (162)
.+.+.||+..+ +.| ..++++ ++. +|... .++++.+.+.+.++
T Consensus 70 ~~~~~fgl~~~------~~P---~v~i~~~~~~-KY~~~--~~~~t~e~i~~Fv~ 112 (130)
T cd02983 70 DLEEALNIGGF------GYP---AMVAINFRKM-KFATL--KGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHcCCCcc------CCC---EEEEEecccC-ccccc--cCccCHHHHHHHHH
Confidence 36677776511 233 366666 554 66631 23334455555554
No 261
>PRK08244 hypothetical protein; Provisional
Probab=47.69 E-value=25 Score=29.07 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=26.7
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcC-CCeEEEEEe
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAA-GKKVILFGV 43 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~-gk~vvl~f~ 43 (162)
+.+|..+|+..+. ..+|..++|.++++ |++++|.|-
T Consensus 391 ~~~G~r~p~~~~~----~~~~~~~~l~~~~~~~~~~ll~~~ 427 (493)
T PRK08244 391 PLNGKRLPDLELT----LSDGESERLYSLLHKGTFLLLSFG 427 (493)
T ss_pred CCCCCCCCCccee----cCCCCceeHHHhhcCCeEEEEEec
Confidence 4689999999987 45666788999875 457777553
No 262
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=47.63 E-value=25 Score=20.25 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=6.8
Q ss_pred CCCCCCCCcC
Q 038822 45 GDFTPTCSLK 54 (162)
Q Consensus 45 ~~~cp~C~~~ 54 (162)
...||.|.+-
T Consensus 6 ~~~~~~~~~v 15 (73)
T cd03056 6 FPLSGNCYKV 15 (73)
T ss_pred CCCCccHHHH
Confidence 4468888774
No 263
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=47.30 E-value=80 Score=20.73 Aligned_cols=56 Identities=5% Similarity=0.002 Sum_probs=34.7
Q ss_pred hHHHHhHHHHHhCCCCeEE--EEEcCCHHHHHHHHHhCCCCC--ceEEEEcCCchHHHHcCCc
Q 038822 57 PGFIEKADELQSKGVDEIL--CISVNDPFVMKAWAKTFPKNK--SVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~--~is~d~~~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~~gv~ 115 (162)
..|+.+..+.+..++ .++ |+..++.....+++++..-.. ...+..||. +-++|++.
T Consensus 11 ~~L~~l~~~a~~~~~-~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~IdP~--~F~~y~I~ 70 (113)
T PF09673_consen 11 ASLRNLLKQAERAGV-VVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQIDPR--LFRQYNIT 70 (113)
T ss_pred HHHHHHHHHHHhCCc-EEEEECCCCCCHHHHHHHHHHHhhccCCCcceeEChh--HHhhCCce
Confidence 457788888877776 443 444455444444444443211 246788876 89999998
No 264
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=47.19 E-value=11 Score=22.17 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=25.5
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH-HHHHHHhCCCCCceEEEEcCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV-MKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~-~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+.+|....||.|++- . +.-+..+..+ .+..+.....+. ...|.+.+.. ..+|++.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v-~-----~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRV-L-----LCLEEKGVDY-ELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHH-H-----HHHHHcCCCc-EEEEeCccccccCCHHHHhhCCC-CCCCEEEECC
Confidence 344544457777764 2 2211122233 444444321111 2234444442 4677777654
No 265
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=47.04 E-value=86 Score=23.27 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=32.5
Q ss_pred CcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 52 SLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 52 ~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
..- .+.+.++.+++.++|+ .++..|.-+....+++.++.+.
T Consensus 20 ~~~-~~~~~~~i~~~~~~gi-~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 20 NQA-LLRLNALLEDHRGEDS-LLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred hHH-HHHHHHHHHHhhccCc-eEEEEcCCCHHHHHHHHhcCCC
Confidence 443 6788888888888888 7777788888888888887776
No 266
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=45.24 E-value=39 Score=27.11 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=18.7
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
|.+.+|..||+|... ...++...+--+..++
T Consensus 49 I~lisGPGCPVCVtp-~~~ID~ai~LA~~~~v 79 (355)
T PF01924_consen 49 IELISGPGCPVCVTP-QGDIDAAIELAKRPGV 79 (355)
T ss_dssp EEEEE-S--TTTTS--HHHHHHHHHHHTT--E
T ss_pred cEEecCCCCccEECc-HHHHHHHHHHhCCCCe
Confidence 566677889999996 8888877766555544
No 267
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=45.19 E-value=45 Score=27.92 Aligned_cols=30 Identities=10% Similarity=-0.157 Sum_probs=21.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADE 65 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~ 65 (162)
.+++-+..|-+..||+|+.- ...++++...
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~-v~~~~~~a~~ 144 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDV-VQALNLMAVL 144 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHH-HHHHHHHHHh
Confidence 35665666668889999985 7777666654
No 268
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=44.40 E-value=37 Score=26.22 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHH
Q 038822 8 DPLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKA 87 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 87 (162)
+.+|-|++. |.+|.++-.+.- .|+.+.-.|+... -...+- +.++++...+.. .++ +|..|+-+....+
T Consensus 80 ~~VPVFtIt----n~~G~pvl~s~~-~~~~~~gvf~s~q--edA~af-L~~lk~~~p~l~-~~~-kV~pvsL~~vYkl-- 147 (270)
T TIGR00995 80 AGTSVFTVS----NAQNEFVLASDN-DGEKSIGLLCFRQ--EDAEAF-LAQLRKRKPEVG-SQA-KVVPITLDQVYKL-- 147 (270)
T ss_pred cCCceEEEE----cCCCCeEEEECC-CCCceEEEEECCH--HHHHHH-HHHHHhhCcccc-CCc-eEEEEEHHHHHHH--
Confidence 468899999 999999888763 4444444443110 001111 222222222222 457 8999988766544
Q ss_pred HHHhCCCCCceEEEEcCC
Q 038822 88 WAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 88 ~~~~~~~~~~~~~l~D~~ 105 (162)
+..++ .|.++.|+.
T Consensus 148 --~~e~l--~F~fiP~~~ 161 (270)
T TIGR00995 148 --KVEGI--GFRFLPDPA 161 (270)
T ss_pred --hhcCc--cEEEeCCHH
Confidence 23446 899999976
No 269
>PRK10026 arsenate reductase; Provisional
Probab=43.91 E-value=4.2 Score=28.13 Aligned_cols=63 Identities=16% Similarity=0.014 Sum_probs=38.0
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE--cC--CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS--VN--DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is--~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|....|.-|++. +..|++ .|+ .+-.+. .+ +.+.+++|++..+. +..-+....+..++.++..
T Consensus 6 iY~~p~Cst~RKA-~~wL~~-------~gi-~~~~~d~~~~ppt~~eL~~~l~~~g~--~~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 6 IYHNPACGTSRNT-LEMIRN-------SGT-EPTIIHYLETPPTRDELVKLIADMGI--SVRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEeCCCCHHHHHH-HHHHHH-------CCC-CcEEEeeeCCCcCHHHHHHHHHhCCC--CHHHHHHcCCchHHHcCCC
Confidence 3434458888885 544443 344 444333 33 57889999999886 4433444556666666654
No 270
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=43.46 E-value=27 Score=20.34 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=7.4
Q ss_pred eeCCCCCCCCcC
Q 038822 43 VPGDFTPTCSLK 54 (162)
Q Consensus 43 ~~~~~cp~C~~~ 54 (162)
|....||.|.+-
T Consensus 4 y~~~~s~~~~~~ 15 (73)
T cd03049 4 LYSPTSPYVRKV 15 (73)
T ss_pred ecCCCCcHHHHH
Confidence 334557877774
No 271
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=43.05 E-value=89 Score=24.58 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=35.3
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
|...+..++++++|+ .+..+|..+.+.....++.+++..-|.++.-.+
T Consensus 151 p~V~EtL~eLkekGi-kLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 151 PFVYDSLDELKERGC-VLVLWSYGNREHVVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred hhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHcCCCccccEEEECC
Confidence 678889999999998 666666677778888999999843455444333
No 272
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=43.03 E-value=56 Score=23.09 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=43.8
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcC----C----chHHHHcCCc
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADG----S----AKYTHALGLE 115 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~----~----~~~~~~~gv~ 115 (162)
.+...+..+.+++.|+ .+..++.|+........+..|+ ....+.++. + ..+.+.+++.
T Consensus 129 ~~~~~~~l~~L~~~Gi-~~~i~TGD~~~~a~~~~~~lgi-~~~~v~a~~~~kP~~k~~~~~i~~l~~~ 194 (215)
T PF00702_consen 129 RPGAKEALQELKEAGI-KVAILTGDNESTASAIAKQLGI-FDSIVFARVIGKPEPKIFLRIIKELQVK 194 (215)
T ss_dssp HTTHHHHHHHHHHTTE-EEEEEESSEHHHHHHHHHHTTS-CSEEEEESHETTTHHHHHHHHHHHHTCT
T ss_pred hhhhhhhhhhhhccCc-ceeeeecccccccccccccccc-ccccccccccccccchhHHHHHHHHhcC
Confidence 5667788888888999 9999999999999999999997 233344433 2 4566777764
No 273
>PHA03075 glutaredoxin-like protein; Provisional
Probab=43.00 E-value=9.5 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.9
Q ss_pred eEEEEEeeCCCCCCCCcCCHhHHHHhHHHH
Q 038822 37 KVILFGVPGDFTPTCSLKHVPGFIEKADEL 66 (162)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~ 66 (162)
.+++.|- ...|++|... -..+.++.+++
T Consensus 3 ~tLILfG-KP~C~vCe~~-s~~l~~ledeY 30 (123)
T PHA03075 3 KTLILFG-KPLCSVCESI-SEALKELEDEY 30 (123)
T ss_pred ceEEEeC-CcccHHHHHH-HHHHHHhhccc
Confidence 3444444 7789999986 55554444443
No 274
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=42.79 E-value=47 Score=20.39 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
.|. +.|+.+ ..||.|.+- +++-+..+..+ +++-+.... ....|.+..+. ..+|++.+.
T Consensus 16 ~~~-~~Ly~~--~~sp~~~kv------~~~L~~~gl~~-~~~~v~~~~--~~~~~~~~np~-~~vPvL~~~ 73 (89)
T cd03055 16 PGI-IRLYSM--RFCPYAQRA------RLVLAAKNIPH-EVININLKD--KPDWFLEKNPQ-GKVPALEID 73 (89)
T ss_pred CCc-EEEEeC--CCCchHHHH------HHHHHHcCCCC-eEEEeCCCC--CcHHHHhhCCC-CCcCEEEEC
Confidence 344 444444 459999984 22222222334 444443322 12234444432 356777654
No 275
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=42.47 E-value=29 Score=22.80 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCCHhHH---HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHH
Q 038822 34 AGKKVILFGVPGDFTPTCSLKHVPGF---IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTH 110 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~~~~~l---~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (162)
+|..+++ -.++..|+.|-.+ .-.- .++...+.+.-. . .-+.-.+..++...++.++ ...++++
T Consensus 21 ~G~~~~v-~~~~~~C~~CGe~-~~~~e~~~~~~~~i~~~~~-~--~~~~~~~~~i~~~r~~~gl---------tq~~lA~ 86 (127)
T TIGR03830 21 KGESITI-GVPGWYCPACGEE-LLDPEESKRNSAALADFYR-K--VDGLLTPPEIRRIRKKLGL---------SQREAAE 86 (127)
T ss_pred cCEEEEE-eeeeeECCCCCCE-EEcHHHHHHHHHHHHHHHH-H--ccCCcCHHHHHHHHHHcCC---------CHHHHHH
Confidence 7776666 7778899999875 4331 122222211100 0 1122356678888888887 3467888
Q ss_pred HcCCc
Q 038822 111 ALGLE 115 (162)
Q Consensus 111 ~~gv~ 115 (162)
.+|+.
T Consensus 87 ~lg~~ 91 (127)
T TIGR03830 87 LLGGG 91 (127)
T ss_pred HhCCC
Confidence 88865
No 276
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=41.36 E-value=59 Score=22.50 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 58 GFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 58 ~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|..+.+++++.|. .++.+..+..+.+.++.++++.
T Consensus 54 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~ 89 (165)
T PF00875_consen 54 SLADLQESLRKLGI-PLLVLRGDPEEVLPELAKEYGA 89 (165)
T ss_dssp HHHHHHHHHHHTTS--EEEEESSHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhcCc-ceEEEecchHHHHHHHHHhcCc
Confidence 47788888899999 8999999988999999998886
No 277
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.24 E-value=1.8e+02 Score=23.26 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=36.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-----HHHHHHHHHhCCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-----PFVMKAWAKTFPK 94 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-----~~~~~~~~~~~~~ 94 (162)
+++.|+.|. |. ..+-.. -.+.+++..+++.|. .|+....|+ .+.++.|-++.|.
T Consensus 137 ~~p~Vil~v-GV-NG~GKT---TTIaKLA~~l~~~g~-~VllaA~DTFRAaAiEQL~~w~er~gv 195 (340)
T COG0552 137 KKPFVILFV-GV-NGVGKT---TTIAKLAKYLKQQGK-SVLLAAGDTFRAAAIEQLEVWGERLGV 195 (340)
T ss_pred CCcEEEEEE-ec-CCCchH---hHHHHHHHHHHHCCC-eEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 567777776 43 333333 367788888888888 888888886 3666778887764
No 278
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.93 E-value=16 Score=23.95 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=39.0
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc--C--CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV--N--DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|....|..|++. +.. +++.++ .+..+.. + +.+.+.+|++..+. ++.-+...++..++..+..
T Consensus 3 iy~~~~C~t~rkA-~~~-------L~~~~i-~~~~~di~~~~~t~~el~~~l~~~~~--~~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 3 IYHNPRCSKSRNA-LAL-------LEEAGI-EPEIVEYLKTPPTAAELRELLAKLGI--SPRDLLRTKEAPYKELGLA 69 (112)
T ss_pred EEECCCCHHHHHH-HHH-------HHHCCC-CeEEEecccCCcCHHHHHHHHHHcCC--CHHHHHhcCCchHHHcCCC
Confidence 3434558888884 433 344455 4444432 3 57889999999986 5555555666666766654
No 279
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.11 E-value=56 Score=19.18 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEc
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLAD 103 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (162)
|+.- +-...+..++++..+.-.|++-...+..+..+|.+..|+ .+....+
T Consensus 9 CP~P-~i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~--~~~~~~~ 58 (69)
T cd03423 9 CPEP-VMMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGH--ELLAQET 58 (69)
T ss_pred CCHH-HHHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCC--EEEEEEE
Confidence 4443 445555565554322102332233456788999999987 6554444
No 280
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=39.68 E-value=38 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=23.4
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
|.+..|..||+|..- ...+++..+--...++
T Consensus 54 ielisGPGCPVCVtp-~~~ID~ai~La~~~~v 84 (364)
T PRK15062 54 IELIHGPGCPVCVTP-MGRIDAAIELASRPGV 84 (364)
T ss_pred cEEecCCCCCcEeCc-HHHHHHHHHHhCCCCe
Confidence 667778889999996 8888877766554454
No 281
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.18 E-value=1.2e+02 Score=23.13 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=5.8
Q ss_pred HHhCCCCeEEEEE
Q 038822 66 LQSKGVDEILCIS 78 (162)
Q Consensus 66 ~~~~~~~~v~~is 78 (162)
+++.|. .++.++
T Consensus 49 i~~~g~-~v~~~~ 60 (279)
T TIGR03590 49 LLSAGF-PVYELP 60 (279)
T ss_pred HHHcCC-eEEEec
Confidence 344555 555554
No 282
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.85 E-value=1.6e+02 Score=21.68 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=25.1
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-----------HHHHHHHHHhCCC
Q 038822 46 DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-----------PFVMKAWAKTFPK 94 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-----------~~~~~~~~~~~~~ 94 (162)
+||.+|... + .+.+.+.|+ .+.+--.++ .++.++|.++++.
T Consensus 10 ~CCAPcs~y-~------le~l~~~~~-~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i 61 (204)
T COG1636 10 SCCAPCSGY-V------LEKLRDSGI-KITIYFYNPNIHPLSEYELRKEEVKRFAEKFGI 61 (204)
T ss_pred eecCCCcHH-H------HHHHHhcCc-ceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 479999986 2 333444456 554443332 3556788898876
No 283
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=38.69 E-value=33 Score=16.24 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=7.5
Q ss_pred CCCCCCcCCH
Q 038822 47 FTPTCSLKHV 56 (162)
Q Consensus 47 ~cp~C~~~~~ 56 (162)
-||.|.+. +
T Consensus 3 ~CPiC~~~-v 11 (26)
T smart00734 3 QCPVCFRE-V 11 (26)
T ss_pred cCCCCcCc-c
Confidence 49999996 6
No 284
>PRK04011 peptide chain release factor 1; Provisional
Probab=38.46 E-value=62 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhC
Q 038822 58 GFIEKADELQSKGVDEILCISVNDPFVMKAWAKTF 92 (162)
Q Consensus 58 ~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~ 92 (162)
.+..+.+..++.|. .|..||.++.+ -.++.+.+
T Consensus 368 ~v~~l~e~a~~~g~-~v~iis~~~e~-G~qL~~~f 400 (411)
T PRK04011 368 IIEELSELAEQSGT-KVEVISTDTEE-GEQLLKAF 400 (411)
T ss_pred HHHHHHHHHHHcCC-EEEEECCCChh-HHHHHHcC
Confidence 35556666677777 77777776543 23343444
No 285
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.45 E-value=73 Score=22.50 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 60 IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 60 ~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+++.+.+++.|+ .|+.+|..+.+.+.++.+...- ..-++..+.
T Consensus 2 ~~~~~~y~~~gy-~v~~~S~~~~~g~~~l~~~l~~--k~~vl~G~S 44 (161)
T PF03193_consen 2 EELLEQYEKLGY-PVFFISAKTGEGIEELKELLKG--KTSVLLGQS 44 (161)
T ss_dssp HHHHHHHHHTTS-EEEE-BTTTTTTHHHHHHHHTT--SEEEEECST
T ss_pred HHHHHHHHHcCC-cEEEEeCCCCcCHHHHHHHhcC--CEEEEECCC
Confidence 456777888899 9999998766666665555543 556666655
No 286
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=37.80 E-value=23 Score=18.67 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=17.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcC
Q 038822 34 AGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 34 ~gk~vvl~f~~~~~cp~C~~~ 54 (162)
+++.+++.-.|+..|+.|-.+
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred CCEEEEEeCCCccccccCCCE
Confidence 677777878889899999764
No 287
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.69 E-value=1e+02 Score=21.79 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.0
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|...++.+.++++|+ .+..+|..+.+.....++..++
T Consensus 94 ~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 94 HPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKHAGL 131 (198)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHCCC
Confidence 4666777888888898 8888888888888888888886
No 288
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=37.51 E-value=38 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=17.1
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHhCC
Q 038822 46 DFTPTCSLKHVPGFIEKADELQSKG 70 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~~~ 70 (162)
.|||.|-. ...+..+.+.+.+.+
T Consensus 2 ~~CpGCg~--~~i~~~~~~a~~~l~ 24 (287)
T TIGR02177 2 DWCPGCGD--FGILSALQRALAELN 24 (287)
T ss_pred CcCCCCCC--hHHHHHHHHHHHHhc
Confidence 59999997 467777777776543
No 289
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=43 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=24.7
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
+.|..|..||+|..- ..+++...+-.+..++
T Consensus 56 i~~i~GPGCPVCVtp-~~~id~aiela~~~~~ 86 (364)
T COG0409 56 VEFIHGPGCPVCVTP-MGRIDTAIELASSKDV 86 (364)
T ss_pred eEEecCCCCCeEeeE-HHHHHHHHHHhCCCCc
Confidence 677778899999997 8888887766655555
No 290
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=37.30 E-value=1.7e+02 Score=22.98 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=33.8
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
|...+..++++++|+ .+..+|..+.+...+.+++.|+..-|..+
T Consensus 149 PgV~EaL~~LkekGi-kLaIaTS~~Re~v~~~L~~lGLd~YFdvI 192 (301)
T TIGR01684 149 PRIYDSLTELKKRGC-ILVLWSYGDRDHVVESMRKVKLDRYFDII 192 (301)
T ss_pred HHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHcCCCcccCEE
Confidence 778899999999998 66666777777788899999984334333
No 291
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=37.20 E-value=1.2e+02 Score=21.62 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=30.7
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN 95 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 95 (162)
.|...++.+.++++|+ .+..+|..+...++.+++++++.
T Consensus 87 ~~g~~~~L~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 87 FPGVEATLGALRAKGL-RLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCcH
Confidence 4566677778888888 78888888888888899988863
No 292
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=37.06 E-value=1.3e+02 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVK 99 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~ 99 (162)
.+...+...+++++|+ .+..+|..+.......++.+++..-|.
T Consensus 91 ~~gv~e~L~~L~~~g~-~l~i~T~k~~~~~~~~l~~~gl~~~F~ 133 (220)
T COG0546 91 FPGVKELLAALKSAGY-KLGIVTNKPERELDILLKALGLADYFD 133 (220)
T ss_pred CCCHHHHHHHHHhCCC-eEEEEeCCcHHHHHHHHHHhCCccccc
Confidence 6777888889999999 888888888889999999998744444
No 293
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=37.02 E-value=1.7e+02 Score=21.60 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=30.8
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHH--HHHHHHHhCCCCC-ceEEEEc
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPF--VMKAWAKTFPKNK-SVKFLAD 103 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~--~~~~~~~~~~~~~-~~~~l~D 103 (162)
.|...+..+++++.|. .+..+|..+.. ...+.+++.++.. .|..+.-
T Consensus 26 ~pga~e~L~~L~~~G~-~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~ 75 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGK-PVYFVSNSPRNIFSLHKTLKSLGINADLPEMIIS 75 (242)
T ss_pred CccHHHHHHHHHHCCC-EEEEEeCCCCChHHHHHHHHHCCCCccccceEEc
Confidence 6777888888888888 77777664433 2336778888743 3444433
No 294
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=36.96 E-value=46 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=23.0
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSKGV 71 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~ 71 (162)
+.+..|..||+|..- ...++...+--...++
T Consensus 60 IelisGPGCPVCVtp-~~~ID~ai~LA~~~~v 90 (369)
T TIGR00075 60 LELVHGPGCPVCVTP-MERIDEAIELATIPEI 90 (369)
T ss_pred cEEecCCCCCcEeCc-HHHHHHHHHHhCCCCe
Confidence 667778889999996 8888877765444444
No 295
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=36.75 E-value=87 Score=21.70 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHHhHHHHHhCCCCeEEEEEcCC
Q 038822 58 GFIEKADELQSKGVDEILCISVND 81 (162)
Q Consensus 58 ~l~~~~~~~~~~~~~~v~~is~d~ 81 (162)
.|++...++++.|++.|+.|+.|.
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Confidence 366777788888887777788874
No 296
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.72 E-value=67 Score=18.47 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcC--CHHHHHHHHHhCCCCCceEEEEcC
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVN--DPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
|+.- +-.+.+..++++. |- .+..++.+ +...+.+|++..|+ .+-...+.
T Consensus 9 CP~P-l~~~~~~l~~l~~-g~-~l~v~~d~~~~~~~i~~~~~~~g~--~~~~~~~~ 59 (69)
T cd00291 9 CPLP-VLKTKKALEKLKS-GE-VLEVLLDDPGAVEDIPAWAKETGH--EVLEVEEE 59 (69)
T ss_pred CCHH-HHHHHHHHhcCCC-CC-EEEEEecCCcHHHHHHHHHHHcCC--EEEEEEEe
Confidence 4443 4445555555443 32 34444443 47889999999988 65544443
No 297
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=36.58 E-value=1.2e+02 Score=23.46 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCCCeeeeeeecCCCceeEehhhhcC--CCeEEEEEeeCCCCCCCCcCCHhHHH-HhHHHHH--hCCCCeEEEEEcCCH
Q 038822 8 DPLPDGTLVYFDEQDQLQQVSVHSLAA--GKKVILFGVPGDFTPTCSLKHVPGFI-EKADELQ--SKGVDEILCISVNDP 82 (162)
Q Consensus 8 ~~~P~f~l~~~~~~~~g~~~~l~~~~~--gk~vvl~f~~~~~cp~C~~~~~~~l~-~~~~~~~--~~~~~~v~~is~d~~ 82 (162)
+.+|-|.+. |.+|.++-.+.- . ++.+.++|+ |..+ ...+- ++...-. ..++ +|..++.+..
T Consensus 73 ~~VPVF~it----n~~G~p~l~~~~-~~~~~~v~~~F~-------s~~d-A~~~L~~lk~~~p~~~~~~-kV~pvsL~~v 138 (274)
T PF04278_consen 73 AGVPVFTIT----NSQGEPVLVSGP-DQGGKSVGLFFF-------SQQD-AEAFLAQLKKSNPELASGA-KVVPVSLGKV 138 (274)
T ss_dssp TTSEEEEEE-----TT--B-----T-TS--SEEEEEES--------HHH-HHHHHHHHHH-SSHHHTT--EEEEEEHHHH
T ss_pred cCceEEEEE----CCCCCEEEeccC-CCCCceEEEEEe-------cHHH-HHHHHHHHhhhCccccCce-EEEEecHHHH
Confidence 357888898 999999877663 3 454555554 2232 22222 2222111 3568 8999998766
Q ss_pred HHHHHHH--HhCCCCCceEEEEcCC
Q 038822 83 FVMKAWA--KTFPKNKSVKFLADGS 105 (162)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~~l~D~~ 105 (162)
..+.+-. +..+. .|.++.|+.
T Consensus 139 Y~l~~~~~~k~~~~--~F~~vP~~~ 161 (274)
T PF04278_consen 139 YQLAQENKKKPEGL--QFRFVPDPK 161 (274)
T ss_dssp HHHHHHTTT-TT-E--EEEEE--HH
T ss_pred HHHHHHhhcCCcCc--eEEEcCCHH
Confidence 5553322 22333 788998866
No 298
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=36.43 E-value=23 Score=15.32 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=11.6
Q ss_pred CCCCCcCCHhHHHHhHHHH
Q 038822 48 TPTCSLKHVPGFIEKADEL 66 (162)
Q Consensus 48 cp~C~~~~~~~l~~~~~~~ 66 (162)
|+.|... .+....+..-+
T Consensus 3 C~~C~~~-~~~~~~l~~H~ 20 (24)
T PF13894_consen 3 CPICGKS-FRSKSELRQHM 20 (24)
T ss_dssp -SSTS-E-ESSHHHHHHHH
T ss_pred CcCCCCc-CCcHHHHHHHH
Confidence 8999987 87777666543
No 299
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=36.24 E-value=82 Score=21.87 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=24.3
Q ss_pred HhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 61 EKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 61 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
++.+++++.|. .++.||.+...-.+.+.+..++
T Consensus 96 e~i~~~~~~~~-~v~IvS~~~~~~i~~~~~~~~i 128 (192)
T PF12710_consen 96 ELIRELKDNGI-KVVIVSGSPDEIIEPIAERLGI 128 (192)
T ss_dssp HHHHHHHHTTS-EEEEEEEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcCC
Confidence 55556666787 7888888877777777777776
No 300
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=36.16 E-value=1.5e+02 Score=24.88 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHhHHHHHhCCCCeEEEEEc-------CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCcc
Q 038822 59 FIEKADELQSKGVDEILCISV-------NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
|....+..++.++.++.++.+ +..+-..+..+..|+ ++.+++..+..-...+|+..
T Consensus 64 L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl--~ievIsG~eEA~l~~~gv~~ 126 (496)
T PRK11031 64 LRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGC--PVQVISGEEEARLIYQGVAH 126 (496)
T ss_pred HHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCC--CeEEeCHHHHHHHHHHhhhh
Confidence 444444445566645666654 334555666777788 99999998876666667764
No 301
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=36.09 E-value=1.1e+02 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHhHHHHHhCCCCeEEEEEc-------CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCcc
Q 038822 58 GFIEKADELQSKGVDEILCISV-------NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 58 ~l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
.|+++.+.+++.++.++.++.+ +..+-..+..++.|+ ++.+++..+.......|+..
T Consensus 43 ~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi--~i~iIsgeeEa~l~~~gv~~ 106 (285)
T PF02541_consen 43 ALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGI--DIEIISGEEEARLSFLGVLS 106 (285)
T ss_dssp HHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS---EEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCC--ceEEecHHHHHHHHHHHHHh
Confidence 3455555555667656777755 344556667788898 99999998865555555543
No 302
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=35.78 E-value=1.5e+02 Score=22.58 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
.|...++.+.++++|+ .+..+|..+.......++.+++..-|..+
T Consensus 144 ~pg~~e~L~~L~~~gi-~laIvSn~~~~~~~~~L~~~gl~~~F~~v 188 (273)
T PRK13225 144 FPGVADLLAQLRSRSL-CLGILSSNSRQNIEAFLQRQGLRSLFSVV 188 (273)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCChhheEEE
Confidence 5778888888888898 78888888888888899999874334443
No 303
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=35.75 E-value=1.6e+02 Score=21.13 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=32.4
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKF 100 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~ 100 (162)
.+.+.++.+.+++.|+ .+..+|.........+++.+++...|..
T Consensus 95 ~~g~~~~l~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~~~f~~ 138 (226)
T PRK13222 95 YPGVKETLAALKAAGY-PLAVVTNKPTPFVAPLLEALGIADYFSV 138 (226)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCCccCccE
Confidence 5667777788888888 7888888777777888888887333443
No 304
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=35.62 E-value=44 Score=20.55 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=17.2
Q ss_pred CceeEehhhhcCCCeEEEEEeeCCCCCCCCcC
Q 038822 23 QLQQVSVHSLAAGKKVILFGVPGDFTPTCSLK 54 (162)
Q Consensus 23 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~ 54 (162)
.++.+.++.+ ..++..+.+-+...||.|...
T Consensus 53 ~~~l~~~D~~-~~~~~~i~~~k~~~C~~C~~~ 83 (84)
T PF05237_consen 53 SGKLLTIDLL-NMSFRSIRIKKNPDCPVCGPK 83 (84)
T ss_dssp BTEEEEEETT-TTEEEEEE----TT-TTT---
T ss_pred hhheeeEECC-CCeEEEEecCCCccCcCcCcC
Confidence 4566666664 778888888888999999874
No 305
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=35.51 E-value=83 Score=23.13 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=32.0
Q ss_pred EEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC---------C------HHHHHHHHHhCCC
Q 038822 39 ILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVN---------D------PFVMKAWAKTFPK 94 (162)
Q Consensus 39 vl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d---------~------~~~~~~~~~~~~~ 94 (162)
||..|.+-.|.-|+.- =..|.++.++ .++ -.++.++| + .+++++|.+..+.
T Consensus 1 vVELFTSQGCsSCPpA-D~~L~~l~~~---~~V-i~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~ 66 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPA-DRLLSELAAR---PDV-IALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGL 66 (202)
T ss_dssp EEEEEE-TT-TT-HHH-HHHHHHHHHH---TSS-EEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-
T ss_pred CeeEecCCCCCCCcHH-HHHHHHhhcC---CCE-EEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCC
Confidence 5778888899999985 6667777766 366 56666654 1 2556778888875
No 306
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.40 E-value=12 Score=21.04 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.5
Q ss_pred CCCCCCcCCHhH
Q 038822 47 FTPTCSLKHVPG 58 (162)
Q Consensus 47 ~cp~C~~~~~~~ 58 (162)
.||+|.+. +..
T Consensus 22 ~CPlC~r~-l~~ 32 (54)
T PF04423_consen 22 CCPLCGRP-LDE 32 (54)
T ss_dssp E-TTT--E-E-H
T ss_pred cCCCCCCC-CCH
Confidence 69999996 765
No 307
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=34.93 E-value=71 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=15.5
Q ss_pred eCCCCCCCCcCCHhHHHHhHHHHHh
Q 038822 44 PGDFTPTCSLKHVPGFIEKADELQS 68 (162)
Q Consensus 44 ~~~~cp~C~~~~~~~l~~~~~~~~~ 68 (162)
+..|||.|-. -.-+..+.+.+.+
T Consensus 6 ~~~~CpGCg~--~~il~al~~al~~ 28 (279)
T PRK11866 6 PPIWCPGCGN--YGILEALRKALAE 28 (279)
T ss_pred CCCCCCCCCC--hHHHHHHHHHHHH
Confidence 4579999998 3555555555544
No 308
>PRK10854 exopolyphosphatase; Provisional
Probab=34.54 E-value=1.7e+02 Score=24.65 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred HHHhHHHHHhCCCCeEEEEEc-------CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCcc
Q 038822 59 FIEKADELQSKGVDEILCISV-------NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
|.++.+.+++.++..+.++.+ +..+-+.+..+..|+ ++.+++..+..-...+|+..
T Consensus 69 L~~F~~~~~~~~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl--~i~vIsG~EEA~l~~~gv~~ 131 (513)
T PRK10854 69 LSLFAERLQGFSPANVCIVGTHTLRQALNATDFLKRAEKVIPY--PIEIISGNEEARLIFMGVEH 131 (513)
T ss_pred HHHHHHHHHhCCCCeEEEEehHHHHcCcCHHHHHHHHHHHHCC--CeEEeCHHHHHHHHHhhhhc
Confidence 444444445566645666654 334555667777788 99999998876666678764
No 309
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.33 E-value=1.5e+02 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
.|-+||-|- -+|-|.|... =.-|.+...+..+. + .|+.+..|..
T Consensus 23 ~rlvViRFG-r~~Dp~C~~m-D~~L~~i~~~vsnf-a-~IylvdideV 66 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKM-DELLSSIAEDVSNF-A-VIYLVDIDEV 66 (142)
T ss_pred ceEEEEEec-CCCCchHhhH-HHHHHHHHHHHhhc-e-EEEEEecchh
Confidence 455666665 6899999995 55677788777654 3 5667777643
No 310
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=33.95 E-value=46 Score=19.36 Aligned_cols=13 Identities=8% Similarity=-0.261 Sum_probs=8.3
Q ss_pred EeeCCCCCCCCcC
Q 038822 42 GVPGDFTPTCSLK 54 (162)
Q Consensus 42 f~~~~~cp~C~~~ 54 (162)
+|....||.|.+-
T Consensus 3 Ly~~~~sp~~~~v 15 (74)
T cd03058 3 LLGAWASPFVLRV 15 (74)
T ss_pred EEECCCCchHHHH
Confidence 3434568888884
No 311
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=33.69 E-value=16 Score=21.64 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=26.7
Q ss_pred eCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 44 PGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 44 ~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
...+||.|++- .++-++++-.+ ++.-+... +.-..+.+..+ ...+|++.+.+
T Consensus 3 ~~~~Sp~~~kv------~~~l~~~~i~~-~~~~v~~~--~~~~~~~~~~p-~~~vPvL~~~g 54 (75)
T PF13417_consen 3 GFPGSPYSQKV------RLALEEKGIPY-ELVPVDPE--EKRPEFLKLNP-KGKVPVLVDDG 54 (75)
T ss_dssp EETTSHHHHHH------HHHHHHHTEEE-EEEEEBTT--STSHHHHHHST-TSBSSEEEETT
T ss_pred CcCCChHHHHH------HHHHHHcCCeE-EEeccCcc--cchhHHHhhcc-cccceEEEECC
Confidence 34678888884 44433433333 44444433 22344555554 24677776543
No 312
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=33.51 E-value=1.1e+02 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=29.5
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+...++.+.++++|. .+..+|.........+++..++
T Consensus 87 ~~g~~~~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~~i 124 (219)
T TIGR00338 87 TEGAEELVKTLKEKGY-KVAVISGGFDLFAEHVKDKLGL 124 (219)
T ss_pred CCCHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcCC
Confidence 3556677777787888 8888888877777888888876
No 313
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.28 E-value=16 Score=24.07 Aligned_cols=61 Identities=7% Similarity=-0.039 Sum_probs=33.5
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE--cC--CHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS--VN--DPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is--~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|....|+.|++. ...| ++.|+ .+-.+. .+ +.+.+++|++..|+ .-+....+...+..+..
T Consensus 4 iy~~p~C~~crkA-~~~L-------~~~gi-~~~~~d~~~~p~s~~eL~~~l~~~g~----~~l~n~~~~~~r~~~~~ 68 (113)
T cd03033 4 FYEKPGCANNARQ-KALL-------EAAGH-EVEVRDLLTEPWTAETLRPFFGDLPV----AEWFNPAAPRVKSGEVV 68 (113)
T ss_pred EEECCCCHHHHHH-HHHH-------HHcCC-CcEEeehhcCCCCHHHHHHHHHHcCH----HHHHhcccHHHHhcCCC
Confidence 4445569999985 4333 33444 443333 33 57889999997764 11222335555554433
No 314
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=33.25 E-value=1.2e+02 Score=21.80 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=30.0
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+...++.+.++++|+ .+..+|....+..+..++.+++
T Consensus 89 ~~G~~~~L~~L~~~g~-~~~ivT~~~~~~~~~~l~~~~l 126 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGI-KVALTTGFDRDTAERLLEKLGW 126 (220)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHhhh
Confidence 4566778888888888 7877888777888888888876
No 315
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=33.11 E-value=1.1e+02 Score=20.85 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=12.6
Q ss_pred HhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCC
Q 038822 61 EKADELQSKGVDEILCISVNDPFVMKAWAKTFP 93 (162)
Q Consensus 61 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~ 93 (162)
++.+.+++.|. .++.+|.....-.+.+++.++
T Consensus 80 ~~l~~l~~~g~-~~~ivS~~~~~~i~~~~~~~g 111 (177)
T TIGR01488 80 ELISWLKERGI-DTVIVSGGFDFFVEPVAEKLG 111 (177)
T ss_pred HHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcC
Confidence 33333334444 344444333333333444433
No 316
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=33.05 E-value=1.8e+02 Score=22.81 Aligned_cols=41 Identities=5% Similarity=0.103 Sum_probs=30.6
Q ss_pred CCeEEEEEcCC--------HHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 71 VDEILCISVND--------PFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 71 ~~~v~~is~d~--------~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+ .|+.|+.|. ..-+-++++.+|+ ..-+++-|+-+-.++|..
T Consensus 17 l-DvilVtGDAYVDHPsFG~AiIgR~Le~~Gy--rVgIiaQPdw~~~~df~~ 65 (302)
T PF08497_consen 17 L-DVILVTGDAYVDHPSFGAAIIGRVLEAHGY--RVGIIAQPDWRSPEDFKR 65 (302)
T ss_pred c-cEEEEeCcccccCcchhHHHHHHHHHHcCC--eEEEEeCCCCCChHHHHH
Confidence 5 688888763 4567889999999 999999999544444443
No 317
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.67 E-value=6.6 Score=25.88 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=37.7
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE--cC--CHHHHHHHHHhCCCCCce-EEEEcCCchHHHHcCCc
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS--VN--DPFVMKAWAKTFPKNKSV-KFLADGSAKYTHALGLE 115 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is--~d--~~~~~~~~~~~~~~~~~~-~~l~D~~~~~~~~~gv~ 115 (162)
+|....|+.|++. ...|+ +.|+ .+..+. .+ +.+.+++|++..|. +. .=+....+..++.++..
T Consensus 3 iy~~~~C~t~rkA-~~~L~-------~~~i-~~~~~di~~~p~t~~el~~~l~~~g~--~~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 3 IYHNPRCSKSRNT-LALLE-------DKGI-EPEVVKYLKNPPTKSELEAIFAKLGL--TVAREMIRTKEALYKELGLS 70 (114)
T ss_pred EEECCCCHHHHHH-HHHHH-------HCCC-CeEEEeccCCCcCHHHHHHHHHHcCC--chHHHHHhcCCcHHHHcCCC
Confidence 4445568888885 44333 3455 444443 23 56889999998875 32 11445566666776654
No 318
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=32.37 E-value=72 Score=24.66 Aligned_cols=28 Identities=7% Similarity=-0.066 Sum_probs=18.7
Q ss_pred EEEeeCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 40 LFGVPGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 40 l~f~~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
....+..|||.|.. --..+.+.+.+++.
T Consensus 11 ~~~~~~~~CpGCg~--~i~~~~v~~al~e~ 38 (277)
T PRK09628 11 VDKMPTLWCWGCGD--GVILKSIIRAIDKL 38 (277)
T ss_pred cCCCCCCcCCCCCC--chHHHHHHHHHHHh
Confidence 33567889999975 34566666666654
No 319
>PHA02762 hypothetical protein; Provisional
Probab=32.31 E-value=58 Score=18.53 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.6
Q ss_pred EEEEc-CCeEEEEEeecC
Q 038822 131 ALLVD-DLKVKAANVESG 147 (162)
Q Consensus 131 ~~ii~-~g~i~~~~~~~~ 147 (162)
++=+| +|+|.|+.+.+-
T Consensus 31 tigide~g~iayisiep~ 48 (62)
T PHA02762 31 TIGIDENDKISYISIEPL 48 (62)
T ss_pred EEeECCCCcEEEEEeccc
Confidence 66677 999999998653
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.24 E-value=96 Score=26.01 Aligned_cols=30 Identities=10% Similarity=-0.093 Sum_probs=19.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHH
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADE 65 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~ 65 (162)
.+++-+..|-+..||+|+.- ...++++..+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~-v~~~~~~a~~ 145 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDV-VQALNQMALL 145 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHh
Confidence 35665555557789999985 6666555544
No 321
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=32.04 E-value=22 Score=21.99 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=7.0
Q ss_pred CCCCCCcC
Q 038822 47 FTPTCSLK 54 (162)
Q Consensus 47 ~cp~C~~~ 54 (162)
|||+|.+.
T Consensus 1 iCPVC~~~ 8 (82)
T PF14768_consen 1 ICPVCQKG 8 (82)
T ss_pred CCCccCCC
Confidence 79999995
No 322
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=31.94 E-value=1.1e+02 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHhHHHHHhCCCCeEEEEEcC----CHHHHHHHHHhCCCCCceEEE
Q 038822 59 FIEKADELQSKGVDEILCISVN----DPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~d----~~~~~~~~~~~~~~~~~~~~l 101 (162)
..++.+.++++|. .+..|+.- .....+..++.+++..-|+++
T Consensus 119 a~elL~~l~~~G~-~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i 164 (237)
T TIGR01672 119 ARQLIDMHQRRGD-AIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVI 164 (237)
T ss_pred HHHHHHHHHHCCC-EEEEEeCCCCCcCHHHHHHHHHHhCCchheeEE
Confidence 6778888888898 78877764 334556666677773334444
No 323
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=31.90 E-value=93 Score=21.64 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=17.7
Q ss_pred EEEEEc-CCeEEEEEeecCCcceeCCHHHHH
Q 038822 130 FALLVD-DLKVKAANVESGGDFTVSSADDIL 159 (162)
Q Consensus 130 ~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il 159 (162)
..+|.| .|+|...-..++..+....+++-+
T Consensus 110 mlvimD~kGRiLtaslSPs~~iHk~~ie~~v 140 (154)
T PF11576_consen 110 MLVIMDSKGRILTASLSPSHVIHKKSIEDAV 140 (154)
T ss_dssp EEEEEETTS-EEEEEEE--TTTS---HHHHH
T ss_pred EEEEEcCCCcEEeeccCchhhhccccHHHHH
Confidence 467778 999999999886665666666543
No 324
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=31.83 E-value=93 Score=18.23 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcC--CHHHHHHHHHhCCCCCceEEEEc
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVN--DPFVMKAWAKTFPKNKSVKFLAD 103 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~~~~~~~~~~~~~l~D 103 (162)
|+.- +-..++..++++. |- .+..+..+ +..++.+|.+..|. .+.....
T Consensus 9 CP~P-vl~~kkal~~l~~-G~-~l~V~~d~~~a~~di~~~~~~~G~--~~~~~~~ 58 (69)
T cd03420 9 CPGP-ILKLKKEIDKLQD-GE-QLEVKASDPGFARDAQAWCKSTGN--TLISLET 58 (69)
T ss_pred CCHH-HHHHHHHHHcCCC-CC-EEEEEECCccHHHHHHHHHHHcCC--EEEEEEe
Confidence 4443 4455556655543 32 23333333 45788999999997 6554443
No 325
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=31.79 E-value=1.9e+02 Score=20.63 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=33.3
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVK 99 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~ 99 (162)
.|...++.+.++++|+ .+..+|..........++.+++..-|.
T Consensus 84 ~~g~~~~l~~L~~~g~-~~~i~S~~~~~~~~~~l~~~gl~~~f~ 126 (214)
T PRK13288 84 YETVYETLKTLKKQGY-KLGIVTTKMRDTVEMGLKLTGLDEFFD 126 (214)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCChhcee
Confidence 5777788888888888 787788888888888889888743243
No 326
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=31.51 E-value=1.7e+02 Score=22.00 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=19.5
Q ss_pred HHHHHHHH--hCCCCCceEEEEcCC----chHHHHcCCc
Q 038822 83 FVMKAWAK--TFPKNKSVKFLADGS----AKYTHALGLE 115 (162)
Q Consensus 83 ~~~~~~~~--~~~~~~~~~~l~D~~----~~~~~~~gv~ 115 (162)
...-+++. +.+. .+-++||.+ ..+-+.+|+.
T Consensus 77 ~~~l~~l~~~~~~~--~~~IiSDaNs~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 77 KELLRFLAKNQRGF--DLIIISDANSFFIETILEHHGLR 113 (234)
T ss_pred HHHHHHHHhcCCCc--eEEEEeCCcHhHHHHHHHhCCCc
Confidence 44455553 3454 778888888 4566777765
No 327
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=31.24 E-value=22 Score=28.19 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCceeEehhhhcCCCeEEE-EEeeCCCCCCCCcC
Q 038822 21 QDQLQQVSVHSLAAGKKVIL-FGVPGDFTPTCSLK 54 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~vvl-~f~~~~~cp~C~~~ 54 (162)
|.+|++|+|-+.. -+ .++ -|| ||.|..+
T Consensus 6 ~~ngq~v~ll~~~-~k-~~~~~ff----CPaC~~~ 34 (342)
T COG4469 6 DENGQTVNLLTAL-QK-TQLQRFF----CPACGSQ 34 (342)
T ss_pred cCCCCEEEehhhH-HH-hhhhccc----cCCCCCe
Confidence 7899999986652 22 222 344 9999886
No 328
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=1.2e+02 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=8.7
Q ss_pred hHHHHHhCCCCeEEEEEcCC
Q 038822 62 KADELQSKGVDEILCISVND 81 (162)
Q Consensus 62 ~~~~~~~~~~~~v~~is~d~ 81 (162)
+++..++.|+ .+..||.++
T Consensus 370 l~e~a~~~Ga-~ve~is~~~ 388 (411)
T COG1503 370 LAELAEESGA-KVEIISDDT 388 (411)
T ss_pred HHHHHHhcCC-eEEEecCch
Confidence 3333344455 555555443
No 329
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=30.94 E-value=26 Score=16.55 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.1
Q ss_pred eeCCCCCCCCcCC
Q 038822 43 VPGDFTPTCSLKH 55 (162)
Q Consensus 43 ~~~~~cp~C~~~~ 55 (162)
|..-+||.|.+ |
T Consensus 3 ~~pC~cphCpr-H 14 (25)
T PF03716_consen 3 WQPCCCPHCPR-H 14 (25)
T ss_pred ccccCCCCCcc-c
Confidence 44567999999 6
No 330
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=30.76 E-value=1.6e+02 Score=22.62 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=17.4
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCH
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVNDP 82 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~ 82 (162)
|.- |-........++.++++ .++.|-.|++
T Consensus 176 ~~~-~e~~~~~~~r~a~e~~i-~l~~I~ld~~ 205 (266)
T cd01460 176 GEF-SEGAQKVRLREAREQNV-FVVFIIIDNP 205 (266)
T ss_pred ccc-CccHHHHHHHHHHHcCC-eEEEEEEcCC
Confidence 444 23333344666667777 7777766664
No 331
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.72 E-value=1.5e+02 Score=18.94 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred HhHHHHHhCCCCeEEEEEcCCHHHH----HHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 61 EKADELQSKGVDEILCISVNDPFVM----KAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 61 ~~~~~~~~~~~~~v~~is~d~~~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+..+.++...+ .++.|+.|.++.. ..+.+.++. ++-.......++++..|..
T Consensus 23 ~v~kai~~gka-klViiA~D~~~~~~~~i~~~c~~~~I--p~~~~~~tk~eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKA-KLVIVASNCPKDIKEDIEYYAKLSGI--PVYEYEGSSVELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCc-eEEEEeCCCCHHHHHHHHHHHHHcCC--CEEEECCCHHHHHHHhCCC
Confidence 34455555567 7888888765443 445566665 6545445668899998864
No 332
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=30.44 E-value=1.5e+02 Score=20.75 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=25.5
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
|...++.+.++++|+ .++.+|.......+..++.+++
T Consensus 83 ~g~~e~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~g~ 119 (201)
T TIGR01491 83 DYAEELVRWLKEKGL-KTAIVSGGIMCLAKKVAEKLNP 119 (201)
T ss_pred ccHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhCC
Confidence 445566667777777 7777777666666777777765
No 333
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=30.41 E-value=22 Score=22.59 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=8.2
Q ss_pred CCCCCCCCcCC
Q 038822 45 GDFTPTCSLKH 55 (162)
Q Consensus 45 ~~~cp~C~~~~ 55 (162)
.++||.|.. |
T Consensus 8 ~tyCp~Ckk-h 17 (94)
T COG1631 8 RTYCPYCKK-H 17 (94)
T ss_pred eecCccccc-c
Confidence 467999999 5
No 334
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=30.36 E-value=1.8e+02 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=23.6
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
+...++.+.++++|. .++.+|.....-.+.+.+..++
T Consensus 90 ~~~~~~l~~l~~~g~-~v~ivS~s~~~~v~~~~~~lg~ 126 (202)
T TIGR01490 90 PEARDLIRWHKAEGH-TIVLVSASLTILVKPLARILGI 126 (202)
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHcCC
Confidence 344555555666777 6777776666666667776665
No 335
>PF12967 DUF3855: Domain of Unknown Function with PDB structure (DUF3855); InterPro: IPR024482 This domain forms an unusual alpha/beta fold where a six-stranded antiparallel beta-sheet is wrapped around a central alpha-helix, flanked by an additional alpha-helix and a small sub-domain consisting of a single beta-strand and a two-stranded antiparallel beta-sheet []. It shows weak structural similarities to phosphoribosylformylglycinamidine synthases and some thioesterase superfamily members, but its function is unknown.; PDB: 1O22_A.
Probab=30.26 E-value=21 Score=23.95 Aligned_cols=30 Identities=3% Similarity=0.089 Sum_probs=12.4
Q ss_pred CCCCCCCCCCeeeeeeecCCCceeEehhhh
Q 038822 3 PIAVGDPLPDGTLVYFDEQDQLQQVSVHSL 32 (162)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~~~g~~~~l~~~ 32 (162)
.|+-|.++|.|.++++....+.....|.++
T Consensus 53 vle~~e~ipsf~~kal~p~~~a~~lplg~w 82 (158)
T PF12967_consen 53 VLEEQEQIPSFIIKALIPKENAVDLPLGDW 82 (158)
T ss_dssp EE-TT----SEEEEEE---S--TT--SSS-
T ss_pred eecccccccHHHHHhcCCccccccCCcchh
Confidence 467899999999997764444455555554
No 336
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=30.10 E-value=1.5e+02 Score=23.99 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=36.5
Q ss_pred CCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHH----------HHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 50 TCSLKHVPGFIEKADELQSKGVDEILCISVNDPFV----------MKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 50 ~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~----------~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|.-|.+.-+......+.- .+ -|+.||..+.+. +++|..-..- +.-++.-.|..++.+|...
T Consensus 57 P~KdE~l~lleGVL~gIPh-~c-~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r--~~i~vHQkDp~la~Af~~~ 128 (381)
T TIGR02460 57 PVKNEKLHLLEGVLSGIPH-EC-PIIIVSNSKREPPDRFKMEVDLIRHFSNLTHR--KIIIIHQKDPALAEAFKEV 128 (381)
T ss_pred EcCCCchhHHhhHhhcCCC-CC-eEEEEeCCCCCChhHHHHHHHHHHHHHHhhcC--ceEEEEcCCHHHHHHHHHc
Confidence 4555546566666666553 46 677777653222 2334443332 6677777788888887643
No 337
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=30.05 E-value=2.1e+02 Score=20.54 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=33.1
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCc-eEEEEcCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKS-VKFLADGS 105 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~-~~~l~D~~ 105 (162)
+...+...+++++|+ .++.+|.-+....+.+.+..++ . .++++.-.
T Consensus 19 ~~~~~~l~~l~~~gi-~~~i~TgR~~~~~~~~~~~l~~--~~~~~I~~NG 65 (221)
T TIGR02463 19 QPAAPWLTRLQEAGI-PVILCTSKTAAEVEYLQKALGL--TGDPYIAENG 65 (221)
T ss_pred HHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCC--CCCcEEEeCC
Confidence 334566667788898 8888888888888889998886 3 45554433
No 338
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=30.04 E-value=2.4e+02 Score=21.26 Aligned_cols=65 Identities=8% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCCCeeeeeeecCCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc
Q 038822 9 PLPDGTLVYFDEQDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV 79 (162)
Q Consensus 9 ~~P~f~l~~~~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~ 79 (162)
.+|.|-..++ ......+.+..+ .|+++++.. +....+=... +........-++..|++.+++.+.
T Consensus 27 ~ip~fp~~tv--~gH~g~l~~G~l-~g~~V~~l~--Gr~H~yeg~~-~~~v~~~i~al~~lGv~~ii~tna 91 (237)
T TIGR01698 27 EIPGFPAPTV--SGHAGELIRVRI-GDGPVLVLG--GRTHAYEGGD-ARAVVHPVRTARATGAETLILTNA 91 (237)
T ss_pred cCCCCCCCcc--cCccceEEEEEE-CCEEEEEEc--CCCcccCCCc-HHHhHHHHHHHHHcCCCEEEEEcc
Confidence 3666666522 234457888886 888766555 4434443443 555567777788889966776644
No 339
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=29.66 E-value=2.4e+02 Score=20.96 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccCCCCccceeEEEEE--cCCeEEEEE
Q 038822 70 GVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALLV--DDLKVKAAN 143 (162)
Q Consensus 70 ~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ii--~~g~i~~~~ 143 (162)
.+ .++.+..+..+..++ + +-+++.|..+.+.++||+. ..| .+|- -+|+...+.
T Consensus 146 ~~-k~ILv~Gs~~~~~~~------l--~~~vYfdQ~G~Lt~rF~I~--------~VP----AvV~~~q~G~~l~I~ 200 (209)
T PRK13738 146 ES-KIILVQGSIPEMSKA------L--DSRIYFDQNGVLCQRFGID--------QVP----ARVSAVPGGRFLKVE 200 (209)
T ss_pred Cc-eEEEECCCHHHHHHH------h--CCceEEcCcchHHHhcCCe--------eec----eEEEEcCCCCEEEEE
Confidence 45 666666554443332 2 4578899999999999998 466 4555 567655444
No 340
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=29.47 E-value=1.1e+02 Score=25.00 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCCCCCcCCH-----hH-HHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCC
Q 038822 47 FTPTCSLKHV-----PG-FIEKADELQSKGVDEILCISVNDPFVMKAWAKTFP 93 (162)
Q Consensus 47 ~cp~C~~~~~-----~~-l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~ 93 (162)
-||.|-.+ + .. +..+.+..++.|. .|..||.++.+ -.++++.+|
T Consensus 348 ~c~~~~~~-~~~~~~~~~ve~L~e~a~~~Ga-~V~iiS~~~ee-G~ql~~~fG 397 (409)
T TIGR00108 348 ICPACGQE-MDVVEERDLIEWLSELAENFGA-KLEFISTESEE-GAQLLTAFG 397 (409)
T ss_pred cCcccCcc-ccchhhhhHHHHHHHHHHHcCC-EEEEECCCChh-HHHHHHhCC
Confidence 47777765 5 22 3556667777888 78888876543 333444443
No 341
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=29.47 E-value=1.9e+02 Score=23.51 Aligned_cols=62 Identities=6% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHH----------HHHHHHHhCCCCCceEEEEcCCchHHHHcCCc
Q 038822 50 TCSLKHVPGFIEKADELQSKGVDEILCISVNDPF----------VMKAWAKTFPKNKSVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 50 ~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~----------~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
+|.-|.+.-+......+.- .+ -|+.||....+ .+++|..-..- +.-++.-.|..++.+|...
T Consensus 58 P~KdE~l~lleGVL~gIPh-~c-~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r--~~i~vHQkDp~la~Af~~a 129 (393)
T PRK14503 58 PVKNERLKLLEGVLKGIPH-EC-PIIVVSNSKREPPDRFKLEVDLVRHFYRLTQR--PIIIVHQKDPGLAEALKEA 129 (393)
T ss_pred EcCCCchhHHhhHhhcCCC-CC-eEEEEeCCCCCCchHHHHHHHHHHHHHhhhcC--ceEEEEcCCHHHHHHHHHc
Confidence 4555546666666666653 46 67777765322 22334443332 6677777788888887643
No 342
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=29.42 E-value=1.9e+02 Score=19.69 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=38.6
Q ss_pred hHHHHhHHHHHhCCCCeEE--EEEcCCHHHHHHHHHhCCCCC-ceEEEEcCCchHHHHcCCccccccCCCCccceeEEEE
Q 038822 57 PGFIEKADELQSKGVDEIL--CISVNDPFVMKAWAKTFPKNK-SVKFLADGSAKYTHALGLELDLSEKGLGTQSRRFALL 133 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~--~is~d~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~i 133 (162)
..|+.+..+.+..|+ .++ |+-.++.....+...+..-.. +..+..||. +-++|++. ..| ++++
T Consensus 12 ~~Lk~l~~~a~~~g~-~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~IdP~--lF~~f~I~--------~VP---a~V~ 77 (130)
T TIGR02742 12 PLLKQLLDQAEALGA-PLVIRGLLDNGFKATATRIQSLIKDGGKSGVQIDPQ--WFKQFDIT--------AVP---AFVV 77 (130)
T ss_pred HHHHHHHHHHHHhCC-eEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEEChH--HHhhcCce--------EcC---EEEE
Confidence 457788888877776 333 344444444433333331111 356777765 99999998 355 3666
Q ss_pred EcCC
Q 038822 134 VDDL 137 (162)
Q Consensus 134 i~~g 137 (162)
..++
T Consensus 78 ~~~~ 81 (130)
T TIGR02742 78 VKDG 81 (130)
T ss_pred ECCC
Confidence 6544
No 343
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=29.38 E-value=58 Score=17.20 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=14.5
Q ss_pred CCCCCCCcCCHhHHHHhHHHHH
Q 038822 46 DFTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~ 67 (162)
..|+.|.+..-.+|+++..++.
T Consensus 14 ~dC~~C~~~G~CeLQ~~~~~~g 35 (41)
T PF10588_consen 14 LDCPTCDKNGNCELQDLAYEYG 35 (41)
T ss_dssp --TTT-TTGGG-HHHHHHHHH-
T ss_pred CcCcCCCCCCCCHHHHHHHHhC
Confidence 3599999876778999888774
No 344
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=29.13 E-value=44 Score=23.07 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=14.7
Q ss_pred eCCCCCCCCcC------CHhHHHHhHHHHHhCCC
Q 038822 44 PGDFTPTCSLK------HVPGFIEKADELQSKGV 71 (162)
Q Consensus 44 ~~~~cp~C~~~------~~~~l~~~~~~~~~~~~ 71 (162)
.++-|.+|..- +-.++.++.++|...|+
T Consensus 37 s~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNv 70 (154)
T PRK13265 37 SSTECFVUTAAGAMDLENQKRVKDLAEKFGAENV 70 (154)
T ss_pred EeeeEEEeecccccchHHHHHHHHHHHhcCCccE
Confidence 36678888762 12334445555544443
No 345
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=29.00 E-value=65 Score=19.29 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=21.2
Q ss_pred eEEEEEcC------CHHHHHHHHHhCCCCCceEEEEcCCchH
Q 038822 73 EILCISVN------DPFVMKAWAKTFPKNKSVKFLADGSAKY 108 (162)
Q Consensus 73 ~v~~is~d------~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (162)
.|++.+.| ++..++.|+...|....|.+..|.++++
T Consensus 22 ~V~v~s~~Gr~v~~Pa~~lRpFvt~~Gv~G~F~l~~d~~~kf 63 (68)
T PF11197_consen 22 KVVVRSDDGRRVQFPARHLRPFVTHDGVHGRFRLEFDDNNKF 63 (68)
T ss_pred EEEEEecCCcEEEEeHHHCcceecCCCceEEEEEEECCCCCE
Confidence 45555554 3455666666666655666666666543
No 346
>PLN02954 phosphoserine phosphatase
Probab=28.92 E-value=1.4e+02 Score=21.51 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|.+.++.+.+++.|. .+..+|..........++.+++
T Consensus 86 ~pg~~e~l~~l~~~g~-~~~IvS~~~~~~i~~~l~~~gi 123 (224)
T PLN02954 86 SPGIPELVKKLRARGT-DVYLVSGGFRQMIAPVAAILGI 123 (224)
T ss_pred CccHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHhCC
Confidence 4677778888888898 8888888888888888888887
No 347
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=28.85 E-value=1.6e+02 Score=20.22 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=22.0
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
+.+.++.+.+++.|+ .+..+|.......+..++.+++
T Consensus 75 ~g~~~ll~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l 111 (188)
T TIGR01489 75 PGFKEFIAFIKEHGI-DFIVISDGNDFFIDPVLEGIGE 111 (188)
T ss_pred ccHHHHHHHHHHcCC-cEEEEeCCcHHHHHHHHHHcCC
Confidence 344555566666666 5666666655666666666654
No 348
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=28.85 E-value=1.4e+02 Score=21.31 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=29.9
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN 95 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 95 (162)
.|...++.+++++.|+ .+..+|..+.......++..++.
T Consensus 96 ~~g~~~~L~~L~~~g~-~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 96 YPGVRDTLMELRESGY-RLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhCChH
Confidence 4566777888888888 77778877777777888888763
No 349
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=28.67 E-value=1.9e+02 Score=21.17 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=30.1
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
.|...++.+.+++.|+ .+..+|..+.......++.+++..-|.++
T Consensus 97 ~pg~~~~L~~L~~~g~-~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i 141 (229)
T PRK13226 97 FDGVEGMLQRLECAGC-VWGIVTNKPEYLARLILPQLGWEQRCAVL 141 (229)
T ss_pred CCCHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCchhcccEE
Confidence 4556667777888887 66667776766677788888763334443
No 350
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.13 E-value=1.8e+02 Score=21.71 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=24.6
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCC-------HHHHHHHHHhCCCCCceEEEEcCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVND-------PFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~-------~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+.++...+++++++|. .|.=+..++ .+.+.+++++++. .--.+.+|.
T Consensus 48 ~saMRhfa~~L~~~G~-~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~--~~~~~~~P~ 101 (224)
T PF04244_consen 48 FSAMRHFADELRAKGF-RVHYIELDDPENTQSFEDALARALKQHGI--DRLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHHHTT---EEEE-TT-TT--SSHHHHHHHHHHHH------EEEE--S
T ss_pred HHHHHHHHHHHHhCCC-EEEEEeCCCccccccHHHHHHHHHHHcCC--CEEEEECCC
Confidence 3446677778888888 777776653 3566677777765 444445544
No 351
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=28.00 E-value=2.7e+02 Score=23.83 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=54.6
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCccccccC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLELDLSEK 121 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~ 121 (162)
||+ -|-|+.--+....++++-..+.+. .|++=. ..+..+.+|.+++.. |+..+-| | +.|.-+.-
T Consensus 338 fF~---~~~~r~~fl~~~~~l~ri~~~~~a-rilaWG-~~~~~lv~~A~~h~i--Pl~~~ED--G-FlRSv~LG------ 401 (671)
T COG3563 338 FFP---VPRCRLKFLNSTQKLARIKLKDDA-RILAWG-NGKEALVEFAEQHHI--PLLRMED--G-FLRSVGLG------ 401 (671)
T ss_pred ccc---CCCceEEEccchHHHHHHhcCcCc-eEEEec-CCcHHHHHHHHHhCC--Ceeeecc--c-ceeecccc------
Confidence 555 345554323445555554445566 666444 788999999999987 6655554 2 22443432
Q ss_pred CCCccceeEEEEEc-CCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 122 GLGTQSRRFALLVD-DLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 122 ~~~~~~~~~~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
...++|..+++| .| ++.....+ +.+|+||+.
T Consensus 402 --s~ltPPlSLv~Dd~~----iYFda~~p---S~LE~iLq~ 433 (671)
T COG3563 402 --SNLTPPLSLVLDDMG----IYFDANTP---SRLEDILQN 433 (671)
T ss_pred --ccCCCCeeEEEcCce----eEecCCCc---hhHHHHHhc
Confidence 122446788887 44 23333443 778888763
No 352
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=27.91 E-value=2.2e+02 Score=25.11 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=37.9
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEc---CCHHHHHHHHHh---CCCC-CceEEEEcCCchHHHHcC
Q 038822 57 PGFIEKADELQSKGVDEILCISV---NDPFVMKAWAKT---FPKN-KSVKFLADGSAKYTHALG 113 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~---d~~~~~~~~~~~---~~~~-~~~~~l~D~~~~~~~~~g 113 (162)
..+.+|+.++++.|. +++-+|. .-+...++|++. -|.. +.-|++..|++-++..|.
T Consensus 561 ~GVAkLyt~Ik~NGY-k~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~R 623 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGY-KILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHR 623 (738)
T ss_pred hhHHHHHHHHHhCCe-eEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHH
Confidence 457789999999999 8988775 334455555544 4432 256888888876655543
No 353
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=27.86 E-value=57 Score=20.90 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=10.1
Q ss_pred EEEEcCCeEEEEEeecC
Q 038822 131 ALLVDDLKVKAANVESG 147 (162)
Q Consensus 131 ~~ii~~g~i~~~~~~~~ 147 (162)
.++.+||+|+|..+.++
T Consensus 78 Aiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 78 AIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEE-TTS-EEEEEEE--
T ss_pred EEEcCCCCEEEEEEeCC
Confidence 33444999999999763
No 354
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=27.75 E-value=2e+02 Score=21.38 Aligned_cols=39 Identities=5% Similarity=0.069 Sum_probs=30.6
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN 95 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 95 (162)
.|.+.++.+.++++|+ .+..+|..+....+..++.+++.
T Consensus 110 ~pgv~e~L~~L~~~g~-~l~I~Tn~~~~~~~~~l~~~gl~ 148 (248)
T PLN02770 110 LNGLYKLKKWIEDRGL-KRAAVTNAPRENAELMISLLGLS 148 (248)
T ss_pred CccHHHHHHHHHHcCC-eEEEEeCCCHHHHHHHHHHcCCh
Confidence 4566777778888888 77778887888888889988873
No 355
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=27.75 E-value=1.4e+02 Score=17.75 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEc-CCeEEEEEeecCCcceeCCHHHHHhc
Q 038822 131 ALLVD-DLKVKAANVESGGDFTVSSADDILKS 161 (162)
Q Consensus 131 ~~ii~-~g~i~~~~~~~~~~~~~~~~~~il~~ 161 (162)
.|-+- ||++++......+ +++.+++++.
T Consensus 42 ~Fev~~~g~~v~sk~~~~~---fp~~~~~~~~ 70 (72)
T TIGR02174 42 AFEVTVNGQLVWSKLRGGG---FPEPEELKQL 70 (72)
T ss_pred EEEEEECCEEEEEeccCCC---CCCHHHHHHh
Confidence 55555 8999998887655 4777777764
No 356
>PRK10853 putative reductase; Provisional
Probab=27.40 E-value=72 Score=21.12 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=35.6
Q ss_pred EeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCC
Q 038822 42 GVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGL 114 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
+|...-|.-|++. +..| ++.|+ .+-.+.. -+.+.+.+|+++.|+ . -+....+..++.++.
T Consensus 4 iy~~~~C~t~rkA-~~~L-------~~~~i-~~~~~d~~k~p~s~~eL~~~l~~~g~--~--~l~n~~~~~~r~L~~ 67 (118)
T PRK10853 4 LYGIKNCDTIKKA-RRWL-------EAQGI-DYRFHDYRVDGLDSELLQGFIDELGW--E--ALLNTRGTTWRKLDE 67 (118)
T ss_pred EEcCCCCHHHHHH-HHHH-------HHcCC-CcEEeehccCCcCHHHHHHHHHHcCH--H--HHHhcCCchHHhCCH
Confidence 4434458888774 4333 33455 5555543 367889999998875 2 144555556666554
No 357
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=27.26 E-value=2.1e+02 Score=20.59 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=22.1
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC-----------HHHHHHHHHhCCC
Q 038822 46 DFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND-----------PFVMKAWAKTFPK 94 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~-----------~~~~~~~~~~~~~ 94 (162)
.||.+|... -.+.+++.|. +|.+.-.++ .+.++++.+..++
T Consensus 5 ~CCaPCs~~-------~~~~L~~~g~-~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i 56 (176)
T PF02677_consen 5 ICCAPCSTY-------PLERLREEGF-DVTGYFYNPNIHPYEEYERRLEELKRFAEKLGI 56 (176)
T ss_pred ecCccccHH-------HHHHHHHCCC-CeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 468888774 2333444465 555544332 2445666666654
No 358
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=1.7e+02 Score=18.65 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCceeEehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHH-hHHHHH
Q 038822 22 DQLQQVSVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIE-KADELQ 67 (162)
Q Consensus 22 ~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~-~~~~~~ 67 (162)
.+|..+.+-++ .. ..+|..-+.|. |..|... -..++. .-..++
T Consensus 28 ~dGGdve~~~i-~~~~g~V~l~l~Ga-C~gC~sS-~~TLk~gIE~~L~ 72 (93)
T COG0694 28 MDGGDVELVGI-DEEDGVVYLRLGGA-CSGCPSS-TVTLKNGIERQLK 72 (93)
T ss_pred ccCCeEEEEEE-ecCCCeEEEEeCCc-CCCCccc-HHHHHHHHHHHHH
Confidence 58888998887 43 33444445454 9999997 777765 333344
No 359
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=27.03 E-value=1.6e+02 Score=21.50 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=30.8
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+...++.+.++++|+ .+..+|..+.+.....++.+++
T Consensus 95 ~~g~~e~L~~Lk~~g~-~~~i~Tn~~~~~~~~~l~~~~l 132 (224)
T PRK14988 95 REDTVPFLEALKASGK-RRILLTNAHPHNLAVKLEHTGL 132 (224)
T ss_pred CCCHHHHHHHHHhCCC-eEEEEeCcCHHHHHHHHHHCCc
Confidence 5677888899998998 7887888777888878888776
No 360
>PRK10200 putative racemase; Provisional
Probab=27.03 E-value=1.5e+02 Score=21.98 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=31.0
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEE
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (162)
.+.|.+..+.+++.|+ ++++|..+++-.....+++. . ++|+++
T Consensus 61 ~~~l~~~~~~L~~~g~-~~iviaCNTah~~~~~l~~~-~--~iPii~ 103 (230)
T PRK10200 61 GDILAEAALGLQRAGA-EGIVLCTNTMHKVADAIESR-C--SLPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHcCC-CEEEECCchHHHHHHHHHHh-C--CCCEee
Confidence 6778899999999999 99999998865544433332 2 456665
No 361
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.87 E-value=1.4e+02 Score=17.47 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=26.0
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEE
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFL 101 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (162)
|+.- +-...+..++++..+.-.|++=...+.+++.+|.+..|. .+-..
T Consensus 9 CP~P-vi~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~--~v~~~ 56 (69)
T cd03422 9 CPYP-AIATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGY--KVLAI 56 (69)
T ss_pred CCHH-HHHHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCC--EEEEE
Confidence 4443 555555665554322102222223356788999999987 55433
No 362
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=26.80 E-value=1.6e+02 Score=21.29 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=30.4
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|...++.+.++++|+ .+..+|..+....+..++.+++
T Consensus 94 ~~g~~~~l~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l 131 (222)
T PRK10826 94 LPGVREALALCKAQGL-KIGLASASPLHMLEAVLTMFDL 131 (222)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCcHHHHHHHHHhCcc
Confidence 4667777778888888 7888888888888888888876
No 363
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.41 E-value=2.4e+02 Score=19.97 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=31.0
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN 95 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 95 (162)
.+...++.+.+++.|+ .+..+|..+.......++..++.
T Consensus 77 ~~g~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~~l~ 115 (205)
T TIGR01454 77 FPGVPELLAELRADGV-GTAIATGKSGPRARSLLEALGLL 115 (205)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHcCCh
Confidence 5778888888888898 78888877777777788888763
No 364
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=26.24 E-value=2e+02 Score=18.98 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=28.3
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcC-CHHHHHHHHHhCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVN-DPFVMKAWAKTFP 93 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~ 93 (162)
.+.+.++.+.++++|+ .+..+|.. .++.....++..+
T Consensus 31 ~~gv~e~L~~Lk~~g~-~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGF-LLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHCCe-EEEEEeCCCCHHHHHHHHHhcc
Confidence 5688899999999998 78777777 6666666666655
No 365
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=26.07 E-value=16 Score=16.59 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=14.1
Q ss_pred CCCCCCcCCHhHHHHhHHHHH
Q 038822 47 FTPTCSLKHVPGFIEKADELQ 67 (162)
Q Consensus 47 ~cp~C~~~~~~~l~~~~~~~~ 67 (162)
+|..|... +.....+..-++
T Consensus 2 ~C~~C~~~-f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKS-FSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEE-ESSHHHHHHHHT
T ss_pred CCCCCCCC-cCCHHHHHHHHC
Confidence 48999986 777666665543
No 366
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=67 Score=18.70 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=16.1
Q ss_pred CCceeEehhhhcCCCeEEEEEeeCCCCCCCCc
Q 038822 22 DQLQQVSVHSLAAGKKVILFGVPGDFTPTCSL 53 (162)
Q Consensus 22 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~ 53 (162)
.+.-.++|.|+..|..| + -||-|..
T Consensus 28 GDRFeIsLeDl~~GE~V------A-rCPSCSL 52 (67)
T COG5216 28 GDRFEISLEDLRNGEVV------A-RCPSCSL 52 (67)
T ss_pred CCEeEEEHHHhhCCceE------E-EcCCceE
Confidence 45667888887555533 1 2887765
No 367
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=25.24 E-value=1.2e+02 Score=19.63 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=23.1
Q ss_pred EEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 75 LCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 75 ~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+.+.-++.|+..+|++++|+ .|.|..-..
T Consensus 51 v~l~F~skE~Ai~yaer~G~--~Y~V~~p~~ 79 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGW--DYEVEEPKK 79 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT---EEEEE-STT
T ss_pred eEeeeCCHHHHHHHHHHcCC--eEEEeCCCC
Confidence 46788999999999999999 998886544
No 368
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=24.96 E-value=1.5e+02 Score=22.28 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=33.1
Q ss_pred CceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHh
Q 038822 23 QLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKT 91 (162)
Q Consensus 23 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~ 91 (162)
.|-...-.++++|++++|+ |..... -..++...+-++..|. .++.++.+..+..-++.+.
T Consensus 111 ~G~~~a~~~lf~g~~~il~-------p~~~~~-~~~~~~~~~l~~~~Ga-~~~~~~~eeHD~~~A~vsh 170 (258)
T PF02153_consen 111 SGPEAADADLFEGRNWILC-------PGEDTD-PEALELVEELWEALGA-RVVEMDAEEHDRIMAYVSH 170 (258)
T ss_dssp SSGGG-TTTTTTTSEEEEE-------ECTTS--HHHHHHHHHHHHHCT--EEEE--HHHHHHHHHHHTH
T ss_pred ccchhhcccccCCCeEEEe-------CCCCCh-HHHHHHHHHHHHHCCC-EEEEcCHHHHHHHHHHHHH
Confidence 3434445555578866664 444443 4456666666677888 7887777666665555543
No 369
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=24.88 E-value=46 Score=19.12 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEcCCHHHHHHHHHhCCCCCceEEEE
Q 038822 76 CISVNDPFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 76 ~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (162)
.++.++++++.+|.++..- +||.-.
T Consensus 14 ~~~L~t~eeI~~W~eERrk--~~PT~~ 38 (56)
T PF10453_consen 14 SIKLQTPEEIAKWIEERRK--NYPTKA 38 (56)
T ss_pred eeecCCHHHHHHHHHHHHH--cCCcHH
Confidence 3455899999999998876 777643
No 370
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.75 E-value=2.9e+02 Score=21.78 Aligned_cols=44 Identities=7% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 59 FIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
-.+..++++++|+ .|+..|.-+......+.++.++ ..|+++...
T Consensus 23 a~~aL~~Lk~~GI-~vVlaTGRt~~ev~~l~~~Lgl--~~p~I~eNG 66 (302)
T PRK12702 23 ARQALAALERRSI-PLVLYSLRTRAQLEHLCRQLRL--EHPFICEDG 66 (302)
T ss_pred HHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHhCC--CCeEEEeCC
Confidence 3455667777898 7887777788889999999987 556665544
No 371
>CHL00104 rpl33 ribosomal protein L33
Probab=24.65 E-value=35 Score=20.36 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=6.8
Q ss_pred CCCCCCcCC
Q 038822 47 FTPTCSLKH 55 (162)
Q Consensus 47 ~cp~C~~~~ 55 (162)
+||.|+. |
T Consensus 51 ycp~c~k-H 58 (66)
T CHL00104 51 FCPYCYK-H 58 (66)
T ss_pred cCCCCCC-E
Confidence 4999999 5
No 372
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=24.45 E-value=31 Score=21.90 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.5
Q ss_pred eEEEEEcCCeEEEEEeec
Q 038822 129 RFALLVDDLKVKAANVES 146 (162)
Q Consensus 129 ~~~~ii~~g~i~~~~~~~ 146 (162)
+.-|+.|||+|++..-++
T Consensus 25 ~hgflfddg~~vw~e~~d 42 (111)
T PF02484_consen 25 RHGFLFDDGDIVWSEDDD 42 (111)
T ss_pred ccceEecCCcEEEecCCh
Confidence 347899999999987654
No 373
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=24.31 E-value=1.6e+02 Score=17.96 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCcCCHhHHHHhHHHHHhCCCCeEEEEEcC--CHHHHHHHHHhCCCCCceE
Q 038822 51 CSLKHVPGFIEKADELQSKGVDEILCISVN--DPFVMKAWAKTFPKNKSVK 99 (162)
Q Consensus 51 C~~~~~~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~~~~~~~~~~~~ 99 (162)
|+.- +-.+++..++++..+ .+..++.| +..++..|.+..|. .+-
T Consensus 19 CP~P-ll~~kk~l~~l~~G~--~l~V~~dd~~~~~di~~~~~~~G~--~~~ 64 (81)
T PRK00299 19 CPEP-VMMVRKTVRNMQPGE--TLLIIADDPATTRDIPSFCRFMDH--ELL 64 (81)
T ss_pred CCHH-HHHHHHHHHcCCCCC--EEEEEeCCccHHHHHHHHHHHcCC--EEE
Confidence 4443 545556666664332 23334443 46788899999987 553
No 374
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.26 E-value=90 Score=21.56 Aligned_cols=73 Identities=7% Similarity=-0.063 Sum_probs=38.0
Q ss_pred eEehhhhcCCCeEEEEEeeC--CCCCCCCcCCH--------hHHHHhHHHHHhC--CCCeEEEEEcCC--HH---HHHHH
Q 038822 26 QVSVHSLAAGKKVILFGVPG--DFTPTCSLKHV--------PGFIEKADELQSK--GVDEILCISVND--PF---VMKAW 88 (162)
Q Consensus 26 ~~~l~~~~~gk~vvl~f~~~--~~cp~C~~~~~--------~~l~~~~~~~~~~--~~~~v~~is~d~--~~---~~~~~ 88 (162)
.+++-|+ .++..++.|+.| .-|+.|...+. -...++.+.+.+. .+ .-+.+|... .+ .+.+.
T Consensus 6 ~~~~~d~-p~~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~~~-~gVt~SGGEl~~~~l~~ll~~ 83 (147)
T TIGR02826 6 IIVFQEV-PNEYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRSLI-SCVLFLGGEWNREALLSLLKI 83 (147)
T ss_pred eEEEeec-CCCEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCCCC-CEEEEechhcCHHHHHHHHHH
Confidence 4577787 888777777742 34888855211 1233455555433 23 345555432 12 23334
Q ss_pred HHhCCCCCceEEEE
Q 038822 89 AKTFPKNKSVKFLA 102 (162)
Q Consensus 89 ~~~~~~~~~~~~l~ 102 (162)
+++.|+ +..+.+
T Consensus 84 lk~~Gl--~i~l~T 95 (147)
T TIGR02826 84 FKEKGL--KTCLYT 95 (147)
T ss_pred HHHCCC--CEEEEC
Confidence 566665 554444
No 375
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=24.12 E-value=3.5e+02 Score=21.06 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=28.7
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHh
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKT 91 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~ 91 (162)
.+.+++..++++++|+ .+..+|..+.+...+.+++
T Consensus 33 ~~~~~e~L~~L~~~Gi-~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGF-LLALASKNDEDDAKKVFER 67 (320)
T ss_pred HHHHHHHHHHHHhCCC-EEEEEcCCCHHHHHHHHHh
Confidence 5788999999999998 6666777777888888887
No 376
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.03 E-value=53 Score=19.13 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=26.1
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcC--CHHHHHHHHHhCCCCCceEEEEcC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVN--DPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
+-.+.+..++++. |- .+..++.+ +..++.+|++..|+ .+.-+.+.
T Consensus 14 ll~~~~~l~~l~~-G~-~l~v~~d~~~~~~di~~~~~~~g~--~~~~~~~~ 60 (70)
T PF01206_consen 14 LLKAKKALKELPP-GE-VLEVLVDDPAAVEDIPRWCEENGY--EVVEVEEE 60 (70)
T ss_dssp HHHHHHHHHTSGT-T--EEEEEESSTTHHHHHHHHHHHHTE--EEEEEEES
T ss_pred HHHHHHHHHhcCC-CC-EEEEEECCccHHHHHHHHHHHCCC--EEEEEEEe
Confidence 4444555555543 33 34444443 45778999999987 65555543
No 377
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.02 E-value=2.8e+02 Score=20.01 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=27.5
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEc----CCHHHHHHHHHhCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISV----NDPFVMKAWAKTFP 93 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~ 93 (162)
-..+.+..+++++.|+ .+..|+. ++.+.++.|.+...
T Consensus 122 ~~~i~~~~~~lkk~~I-~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 122 EKDLVKLAKRLKKNNV-SVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHHHcCC-eEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 4567788889988898 7777765 35677788887764
No 378
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=23.99 E-value=2.2e+02 Score=21.53 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=30.2
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN 95 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 95 (162)
.+...++.++++++|+ .+..+|..+.......++.+++.
T Consensus 111 ~pg~~e~L~~L~~~g~-~l~I~Tn~~~~~~~~~l~~~gl~ 149 (260)
T PLN03243 111 RPGSREFVQALKKHEI-PIAVASTRPRRYLERAIEAVGME 149 (260)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCcCHHHHHHHHHHcCCH
Confidence 4566677778888888 78778887778888888888863
No 379
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=23.95 E-value=37 Score=18.41 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=5.3
Q ss_pred CCCCCcC
Q 038822 48 TPTCSLK 54 (162)
Q Consensus 48 cp~C~~~ 54 (162)
||+|...
T Consensus 1 CP~C~~k 7 (43)
T PF03470_consen 1 CPFCPGK 7 (43)
T ss_pred CCCCCCC
Confidence 8888773
No 380
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=23.90 E-value=33 Score=24.06 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=23.8
Q ss_pred EEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEE
Q 038822 41 FGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILC 76 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~ 76 (162)
.||...-||.|-.- .+.+.++.+++. ++ +|..
T Consensus 3 ~~~~D~~Cp~cy~~-~~~l~~l~~~~~--~~-~i~~ 34 (193)
T PF01323_consen 3 EFFFDFICPWCYLA-SPRLRKLRAEYP--DV-EIEW 34 (193)
T ss_dssp EEEEBTTBHHHHHH-HHHHHHHHHHHT--TC-EEEE
T ss_pred EEEEeCCCHHHHHH-HHHHHHHHHHhc--CC-cEEE
Confidence 34447779999996 899999999884 35 5543
No 381
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=23.85 E-value=3e+02 Score=20.25 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.8
Q ss_pred ceEEEEcCCchHHHHcCCc
Q 038822 97 SVKFLADGSAKYTHALGLE 115 (162)
Q Consensus 97 ~~~~l~D~~~~~~~~~gv~ 115 (162)
+-++..|.++.+.++||+.
T Consensus 166 ~~~vYfdQ~g~Lt~rF~I~ 184 (202)
T TIGR02743 166 DSRIYFDQHGKLTQKFGIK 184 (202)
T ss_pred CCceEEcCCchHhhccCce
Confidence 4568899999999999998
No 382
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=23.60 E-value=32 Score=26.38 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=6.3
Q ss_pred eCCCCCCCCc
Q 038822 44 PGDFTPTCSL 53 (162)
Q Consensus 44 ~~~~cp~C~~ 53 (162)
...|||.|+.
T Consensus 264 ~t~~CP~CQ~ 273 (274)
T PRK01103 264 STFFCPRCQK 273 (274)
T ss_pred CcEECcCCCC
Confidence 3467777765
No 383
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=45 Score=19.14 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=12.9
Q ss_pred CCCCCCCCcCCHhHHHHhH
Q 038822 45 GDFTPTCSLKHVPGFIEKA 63 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~~ 63 (162)
...||.|++- +..+.+-+
T Consensus 43 ~g~CPiCRap-i~dvIkTY 60 (62)
T KOG4172|consen 43 HGCCPICRAP-IKDVIKTY 60 (62)
T ss_pred CCcCcchhhH-HHHHHHhh
Confidence 4569999996 77665543
No 384
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.51 E-value=94 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=15.9
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHh
Q 038822 46 DFTPTCSLKHVPGFIEKADELQS 68 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~ 68 (162)
.|||.|-.. .-++.+.+.+.+
T Consensus 18 ~~CpGCg~~--~il~~l~~al~~ 38 (286)
T PRK11867 18 RWCPGCGDG--SILAALQRALAE 38 (286)
T ss_pred CcCCCCCCH--HHHHHHHHHHHH
Confidence 499999984 477777777754
No 385
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=23.42 E-value=2.6e+02 Score=20.99 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=30.6
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCH---HHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDP---FVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~---~~~~~~~~~~~~ 94 (162)
+|...++++.++++|+ .|+.+|.=+. +...+++++.|+
T Consensus 122 ip~al~l~~~l~~~G~-~Vf~lTGR~e~~r~~T~~nL~~~G~ 162 (229)
T TIGR01675 122 LPEGLKLYQKIIELGI-KIFLLSGRWEELRNATLDNLINAGF 162 (229)
T ss_pred CHHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHHcCC
Confidence 6888899999999999 8888887443 336788999988
No 386
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=23.38 E-value=13 Score=20.30 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=17.1
Q ss_pred CCCCCCCcCCHhHHHHhHHHHHh
Q 038822 46 DFTPTCSLKHVPGFIEKADELQS 68 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~~~~~~~ 68 (162)
-.|.+|+.- .+.+.++.+++.+
T Consensus 17 GkC~PCR~G-t~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREG-TRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCC-CCHHHHHHHHHTB
T ss_pred CCCCCcHhH-HHHHHHHHHHHHc
Confidence 369999996 9999999998864
No 387
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=23.38 E-value=33 Score=20.20 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=7.8
Q ss_pred CCCCCCCCcC
Q 038822 45 GDFTPTCSLK 54 (162)
Q Consensus 45 ~~~cp~C~~~ 54 (162)
...||.|++-
T Consensus 7 ~~~~p~c~kv 16 (77)
T cd03040 7 YKTCPFCCKV 16 (77)
T ss_pred cCCCHHHHHH
Confidence 4569999985
No 388
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=23.30 E-value=2.4e+02 Score=18.95 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=24.2
Q ss_pred EEEEeeCCCCC--CCCc----CCHhHHHHhHHHHHhCCCCeEEEEEc
Q 038822 39 ILFGVPGDFTP--TCSL----KHVPGFIEKADELQSKGVDEILCISV 79 (162)
Q Consensus 39 vl~f~~~~~cp--~C~~----~~~~~l~~~~~~~~~~~~~~v~~is~ 79 (162)
+=+|=|+-+|+ +|-- + +.++....+.++++|+ .|.-.+.
T Consensus 4 i~ifepamCC~tGvCG~~vd~e-L~~~a~~~~~Lk~~gv-~v~RyNL 48 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPE-LVRFAADLDWLKEQGV-EVERYNL 48 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HH-HHHHHHHHHHHHHTT--EEEEEET
T ss_pred eEEeccccccccCccCCCCCHH-HHHHHHHHHHHHhCCc-eEEEEcc
Confidence 44555777775 5543 5 7778888899999998 7765554
No 389
>PRK00595 rpmG 50S ribosomal protein L33; Validated
Probab=23.23 E-value=39 Score=19.13 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=6.7
Q ss_pred CCCCCCcCC
Q 038822 47 FTPTCSLKH 55 (162)
Q Consensus 47 ~cp~C~~~~ 55 (162)
+||.|++ |
T Consensus 39 ycp~~~k-h 46 (53)
T PRK00595 39 YDPVLRK-H 46 (53)
T ss_pred cCCCCCC-E
Confidence 3999998 5
No 390
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.22 E-value=1.9e+02 Score=17.83 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=33.1
Q ss_pred HhHHHHHhCCCCeEEEEEcCCHHHH----HHHHHhCCCCCceEEEEcCCchHHHHcCCcc
Q 038822 61 EKADELQSKGVDEILCISVNDPFVM----KAWAKTFPKNKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 61 ~~~~~~~~~~~~~v~~is~d~~~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
...+.++...+ .++.|+.|..+.. ..+.+.++. ++ +......++++..|...
T Consensus 15 ~vlkaIk~gka-kLViiA~Da~~~~~k~i~~~c~~~~V--pv-~~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 15 QTLKAITNCNV-LQVYIAKDAEEHVTKKIKELCEEKSI--KI-VYIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHHHcCCe-eEEEEeCCCCHHHHHHHHHHHHhCCC--CE-EEeCCHHHHHHHHCCcc
Confidence 34455555566 7888888754443 334566665 66 34445588999999874
No 391
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.20 E-value=2.3e+02 Score=20.80 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=25.0
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|...++.+.+++.|. +++.||.....-.+...++.|+
T Consensus 79 ~~ga~elv~~lk~~G~-~v~iiSgg~~~lv~~ia~~lg~ 116 (212)
T COG0560 79 TPGAEELVAALKAAGA-KVVIISGGFTFLVEPIAERLGI 116 (212)
T ss_pred CccHHHHHHHHHHCCC-EEEEEcCChHHHHHHHHHHhCC
Confidence 4555666667777777 7777777665556666666665
No 392
>TIGR01023 rpmG_bact ribosomal protein L33, bacterial type. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents.
Probab=23.17 E-value=40 Score=19.18 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=6.7
Q ss_pred CCCCCCcCC
Q 038822 47 FTPTCSLKH 55 (162)
Q Consensus 47 ~cp~C~~~~ 55 (162)
+||.|++ |
T Consensus 40 ycp~~~k-h 47 (54)
T TIGR01023 40 YCPVCRK-H 47 (54)
T ss_pred cCCCCCC-e
Confidence 3999998 5
No 393
>PRK00504 rpmG 50S ribosomal protein L33; Validated
Probab=22.99 E-value=40 Score=18.88 Aligned_cols=8 Identities=50% Similarity=1.256 Sum_probs=6.7
Q ss_pred CCCCCCcCC
Q 038822 47 FTPTCSLKH 55 (162)
Q Consensus 47 ~cp~C~~~~ 55 (162)
+||.|++ |
T Consensus 36 ycp~c~k-h 43 (50)
T PRK00504 36 FCPRCNK-H 43 (50)
T ss_pred cCCCCCC-e
Confidence 4999998 5
No 394
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.97 E-value=2e+02 Score=19.60 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=19.9
Q ss_pred hHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 62 KADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 62 ~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
..++++++|+ .+..+|..+.....+.++++++
T Consensus 36 ~i~~Lk~~G~-~i~IvTn~~~~~~~~~l~~~gi 67 (154)
T TIGR01670 36 GIRCALKSGI-EVAIITGRKAKLVEDRCKTLGI 67 (154)
T ss_pred HHHHHHHCCC-EEEEEECCCCHHHHHHHHHcCC
Confidence 3455556666 6666666665666666666665
No 395
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=22.94 E-value=4.1e+02 Score=21.42 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+.|+++..- |-.-... ...-.+...++.+.|+ +++=++..+.+..+++.+-.. ..+.|+++|-.
T Consensus 17 ~~PI~VQSM----tnt~T~D-v~atv~QI~~L~~aGc-eiVRvavp~~~~A~al~~I~~-~~~iPlVADIH 80 (346)
T TIGR00612 17 DAPIVVQSM----TNTDTID-IDSTVAQIRALEEAGC-DIVRVTVPDRESAAAFEAIKE-GTNVPLVADIH 80 (346)
T ss_pred CCcEEEEec----CCCCchh-HHHHHHHHHHHHHcCC-CEEEEcCCCHHHHHhHHHHHh-CCCCCEEEeeC
Confidence 345655544 2222333 4555555666777899 999999887766655433222 23899999954
No 396
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.88 E-value=28 Score=24.05 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.1
Q ss_pred EeeCCCCCCCCcCCHhHHH
Q 038822 42 GVPGDFTPTCSLKHVPGFI 60 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~ 60 (162)
|-+-.-||.|+.. +|+|-
T Consensus 6 FGpei~CPhCRQ~-ipALt 23 (163)
T TIGR02652 6 FGPEIRCPHCRQN-IPALT 23 (163)
T ss_pred cCCcCcCchhhcc-cchhe
Confidence 4456679999997 99864
No 397
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=22.79 E-value=2e+02 Score=20.90 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred CCceeEehhhhcCC-CeEEEEEeeCCCCCCCCcCCHhHHHHhH-HHHHh
Q 038822 22 DQLQQVSVHSLAAG-KKVILFGVPGDFTPTCSLKHVPGFIEKA-DELQS 68 (162)
Q Consensus 22 ~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~~~~l~~~~-~~~~~ 68 (162)
.+|..+.|-++ .+ +.+.|.+- |. |-.|... --.|.... ..+++
T Consensus 124 ~dGGdielv~v-~~~~~v~v~l~-Ga-C~gC~~s-~~Tl~~~ie~~l~~ 168 (190)
T TIGR03341 124 SHGGKVTLVEI-TDDGVAVLQFG-GG-CNGCSMV-DVTLKDGVEKTLLE 168 (190)
T ss_pred hcCCceEEEEE-cCCCEEEEEEe-ec-CCCCcch-HHHHHHHHHHHHHH
Confidence 57888888886 54 43444444 55 9999997 77776433 44443
No 398
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=22.74 E-value=3.8e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=31.5
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
..|.++.+++++.|. .++....++.+.+.++.++++.
T Consensus 61 esL~~L~~~L~~~g~-~L~v~~G~~~~vl~~L~~~~~~ 97 (429)
T TIGR02765 61 ESLKDLRTSLRKLGS-DLLVRSGKPEDVLPELIKELGV 97 (429)
T ss_pred HHHHHHHHHHHHcCC-CeEEEeCCHHHHHHHHHHHhCC
Confidence 457888889999998 8888888888889999998886
No 399
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=22.71 E-value=46 Score=15.82 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.7
Q ss_pred CCCCCcCCHhH
Q 038822 48 TPTCSLKHVPG 58 (162)
Q Consensus 48 cp~C~~~~~~~ 58 (162)
||.|.++ ++.
T Consensus 3 CP~C~~~-V~~ 12 (26)
T PF10571_consen 3 CPECGAE-VPE 12 (26)
T ss_pred CCCCcCC-chh
Confidence 8889887 654
No 400
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.70 E-value=26 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=12.7
Q ss_pred CCCCCCCCcCCHhHHHHh
Q 038822 45 GDFTPTCSLKHVPGFIEK 62 (162)
Q Consensus 45 ~~~cp~C~~~~~~~l~~~ 62 (162)
-.+||.|..+ +..+.+.
T Consensus 4 Dg~C~lC~~~-~~~l~~~ 20 (114)
T PF04134_consen 4 DGDCPLCRRE-VRFLRRR 20 (114)
T ss_pred CCCCHhHHHH-HHHHHhc
Confidence 4569999997 7666655
No 401
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.69 E-value=75 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.1
Q ss_pred CeeeeeeecCCCceeEehhh
Q 038822 12 DGTLVYFDEQDQLQQVSVHS 31 (162)
Q Consensus 12 ~f~l~~~~~~~~g~~~~l~~ 31 (162)
.|+++++ |.+|.++++|+
T Consensus 40 ~ft~kw~--DEEGDp~tiSS 57 (83)
T cd06404 40 PFTLKWI--DEEGDPCTISS 57 (83)
T ss_pred cEEEEEE--CCCCCceeecC
Confidence 7889888 56788888765
No 402
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=22.29 E-value=93 Score=21.52 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH
Q 038822 69 KGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT 109 (162)
Q Consensus 69 ~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
+|+-.+++|..++.++-.+++.+.=+ ++.++.|.++++.
T Consensus 25 ~GllvLvGV~~~Dt~~~a~~l~~Ki~--~lRiF~D~~gKmN 63 (145)
T COG1490 25 QGLLVLVGVTHDDTEEDADYLAEKIL--NLRIFEDEEGKMN 63 (145)
T ss_pred CcEEEEEeecCCCCHHHHHHHHHHHh--ceEeecCcccccc
Confidence 34414567776555444455544444 7888888877653
No 403
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.29 E-value=3.1e+02 Score=22.59 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=44.1
Q ss_pred HHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCCchHH-HHcCCcc---ccccCCCCccceeEEEEEc-CCeEE
Q 038822 66 LQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGSAKYT-HALGLEL---DLSEKGLGTQSRRFALLVD-DLKVK 140 (162)
Q Consensus 66 ~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~---~~~~~~~~~~~~~~~~ii~-~g~i~ 140 (162)
.+.... ++++...|...+.+.-.++.|. .-.++.|=.-.++ +++.+.. +.++...-....|.+|.++ +|+|+
T Consensus 157 vesyky-qvlafatdadkrqeteqqklgs--gkrlvvdwtlnigeqaldicivsfnqsassvfvlgernffclkdngqir 233 (802)
T KOG3679|consen 157 VESYKY-QVLAFATDADKRQETEQQKLGS--GKRLVVDWTLNIGEQALDICIVSFNQSASSVFVLGERNFFCLKDNGQIR 233 (802)
T ss_pred hhhhhe-eeEEEeccchhhhhhHHhhccC--CcEEEEEeeeccChhhheEEEEEeccccceEEEEeccceEEEccCCEEE
Confidence 344556 8888888876666666666665 4445555332222 2233322 1111111112334577777 99999
Q ss_pred EEEeecCC
Q 038822 141 AANVESGG 148 (162)
Q Consensus 141 ~~~~~~~~ 148 (162)
++..-++.
T Consensus 234 fmkrldws 241 (802)
T KOG3679|consen 234 FMKRLDWS 241 (802)
T ss_pred EeeccCCC
Confidence 99887643
No 404
>PRK12359 flavodoxin FldB; Provisional
Probab=22.01 E-value=2.2e+02 Score=20.18 Aligned_cols=10 Identities=0% Similarity=-0.280 Sum_probs=5.0
Q ss_pred HHHHHHhCCC
Q 038822 85 MKAWAKTFPK 94 (162)
Q Consensus 85 ~~~~~~~~~~ 94 (162)
+.+.+++.|.
T Consensus 104 l~~~l~~~Ga 113 (172)
T PRK12359 104 LHDKLAPKGV 113 (172)
T ss_pred HHHHHHhCCC
Confidence 4445555554
No 405
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=21.93 E-value=3.3e+02 Score=19.99 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.8
Q ss_pred hHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEE
Q 038822 57 PGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLA 102 (162)
Q Consensus 57 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (162)
+.-.+..++++++|+ .++..|.-++.....+.++.++ .-++++
T Consensus 18 ~~~~~ai~~l~~~G~-~~vi~TgR~~~~~~~~~~~lg~--~~~~I~ 60 (225)
T TIGR02461 18 GPAREALEELKDLGF-PIVFVSSKTRAEQEYYREELGV--EPPFIV 60 (225)
T ss_pred hHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCC--CCcEEE
Confidence 334556667777888 7887788788888889998886 334444
No 406
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=21.89 E-value=31 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.3
Q ss_pred EEeeCCCCCCCCcCCHhHH
Q 038822 41 FGVPGDFTPTCSLKHVPGF 59 (162)
Q Consensus 41 ~f~~~~~cp~C~~~~~~~l 59 (162)
.+++.+.|+.|.+. ++-.
T Consensus 29 i~~~rS~C~~C~~~-L~~~ 46 (92)
T PF06750_consen 29 IIFPRSHCPHCGHP-LSWW 46 (92)
T ss_pred ccCCCCcCcCCCCc-Cccc
Confidence 34567889999996 7653
No 407
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=21.80 E-value=49 Score=16.16 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=11.4
Q ss_pred CCCCCCCcCCHhHHHHh
Q 038822 46 DFTPTCSLKHVPGFIEK 62 (162)
Q Consensus 46 ~~cp~C~~~~~~~l~~~ 62 (162)
.+|..|... +..-..+
T Consensus 4 ~~C~~C~~~-~~~~~~~ 19 (35)
T smart00451 4 FYCKLCNVT-FTDEISV 19 (35)
T ss_pred eEccccCCc-cCCHHHH
Confidence 469999997 7754444
No 408
>PRK07190 hypothetical protein; Provisional
Probab=21.79 E-value=92 Score=26.00 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCCCCCCCCeeeeeeecCCCceeEehhhhcC-CCeEEEEE
Q 038822 4 IAVGDPLPDGTLVYFDEQDQLQQVSVHSLAA-GKKVILFG 42 (162)
Q Consensus 4 l~~G~~~P~f~l~~~~~~~~g~~~~l~~~~~-gk~vvl~f 42 (162)
+.+|+.+||+.+. .. +....|.++++ +++++|.|
T Consensus 381 ~l~G~r~pd~~~~----~~-~~~~~l~~~~~~~~~~ll~~ 415 (487)
T PRK07190 381 GLCGSRLFDFEIF----QG-SEKTRLYSLLDYRKFTLFIF 415 (487)
T ss_pred CccCccCCCCccc----CC-cccccHHHhhcCCceEEEEe
Confidence 3579999999886 33 34467888874 55777755
No 409
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=21.73 E-value=52 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=18.7
Q ss_pred CCCCCCcCCHhHHHHhHHHHHh
Q 038822 47 FTPTCSLKHVPGFIEKADELQS 68 (162)
Q Consensus 47 ~cp~C~~~~~~~l~~~~~~~~~ 68 (162)
-||.|... ++.|..+.+.+..
T Consensus 17 lCPiC~~d-l~~~~~L~~H~d~ 37 (505)
T KOG1842|consen 17 LCPICLLD-LPNLSALNDHLDV 37 (505)
T ss_pred cCchHhhh-hhhHHHHHHHHhh
Confidence 49999998 9999999988864
No 410
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=21.67 E-value=2.9e+02 Score=19.29 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=45.2
Q ss_pred eEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcC
Q 038822 37 KVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADG 104 (162)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
+=+|...-|-.-|.+... ....+++.+++..+ .+++|+..+..+...|.++. +|..+.|.
T Consensus 81 ~D~vVlmGGLAMP~~~v~-~e~v~~li~ki~~~---~iiGiCFms~F~kagW~~~I----~FD~iID~ 140 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVT-PEDVNELIKKISPK---KIIGICFMSMFEKAGWDDKI----DFDYIIDA 140 (147)
T ss_dssp EEEEEEEGGGGSTTTS---HHHHHHHHHHHEEE---EEEEEEETTHHHHTTHHHHS------SEEEEE
T ss_pred CCEEEEEcccccCCCCCC-HHHHHHHHHHhCcC---CEEEEehHHHHHHcCCcccc----CccEEEee
Confidence 555666668889999997 89999999998754 59999999999999999976 45555553
No 411
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=40 Score=18.94 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=6.7
Q ss_pred CCCCCCcCC
Q 038822 47 FTPTCSLKH 55 (162)
Q Consensus 47 ~cp~C~~~~ 55 (162)
+||.|++ |
T Consensus 36 ycp~~~k-h 43 (50)
T COG0267 36 YCPVCRK-H 43 (50)
T ss_pred cCccccc-E
Confidence 4999998 5
No 412
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=21.52 E-value=3.2e+02 Score=19.72 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=8.2
Q ss_pred eEEEEEcCCHHHHHHHHHhC
Q 038822 73 EILCISVNDPFVMKAWAKTF 92 (162)
Q Consensus 73 ~v~~is~d~~~~~~~~~~~~ 92 (162)
+|+.|...+.+...+..+.+
T Consensus 28 eiivvD~gStD~t~~i~~~~ 47 (229)
T cd02511 28 EIIVVDSGSTDRTVEIAKEY 47 (229)
T ss_pred EEEEEeCCCCccHHHHHHHc
Confidence 45555443333333333333
No 413
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=21.31 E-value=2.3e+02 Score=18.61 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=47.3
Q ss_pred cCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCC----C-ceEEEEcCCch
Q 038822 33 AAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKN----K-SVKFLADGSAK 107 (162)
Q Consensus 33 ~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~----~-~~~~l~D~~~~ 107 (162)
++.+.=||..|..+ --....+ +..+.+.+++.+..|. +..|...+. +.++.+++.... + ++.+..=.+|.
T Consensus 16 LRTr~NVLvLy~ks-~k~a~~~-Lk~~~~~A~~vkG~gT--~~~vdCgd~-e~kKLCKKlKv~~~~kp~~~~LkHYKdG~ 90 (112)
T cd03067 16 LRTRNNVLVLYSKS-AKSAEAL-LKLLSDVAQAVKGQGT--IAWIDCGDS-ESRKLCKKLKVDPSSKPKPVELKHYKDGD 90 (112)
T ss_pred HhhcCcEEEEEecc-hhhHHHH-HHHHHHHHHHhcCcee--EEEEecCCh-HHHHHHHHHccCCCCCCCcchhhcccCCC
Confidence 34444444444343 4455565 8889999999988775 666666543 445566666553 1 45555556677
Q ss_pred HHHHcCCc
Q 038822 108 YTHALGLE 115 (162)
Q Consensus 108 ~~~~~gv~ 115 (162)
+.++|.-.
T Consensus 91 fHkdYdR~ 98 (112)
T cd03067 91 FHTEYNRQ 98 (112)
T ss_pred ccccccch
Confidence 77777643
No 414
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=21.18 E-value=3.1e+02 Score=19.48 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=29.1
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcC-CHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVN-DPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~ 94 (162)
.+...++.+.++++|. .+..+|.. .....+..++..++
T Consensus 47 ~pGv~elL~~Lk~~G~-~l~I~Sn~~~~~~~~~~L~~~~l 85 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGT-YLATASWNDVPEWAYEILGTFEI 85 (174)
T ss_pred cccHHHHHHHHHHCCC-EEEEEeCCCChHHHHHHHHhCCc
Confidence 3566788888888998 78777765 77777778888775
No 415
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=21.18 E-value=45 Score=20.06 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=5.7
Q ss_pred CCCCCCCcC
Q 038822 46 DFTPTCSLK 54 (162)
Q Consensus 46 ~~cp~C~~~ 54 (162)
.|||.|.+-
T Consensus 14 ~~Sp~~~kv 22 (84)
T cd03038 14 AFSPNVWKT 22 (84)
T ss_pred CcCChhHHH
Confidence 457777764
No 416
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.96 E-value=4.6e+02 Score=21.27 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCCCCceEEEEcCC
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPKNKSVKFLADGS 105 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
+.|+++.--.. ++ ... ...-.+...++.+.|+ +++=++..+.+..+.+.+-.. ..+.|+++|-.
T Consensus 25 ~~Pi~VQSMt~--t~--T~D-v~atv~Qi~~L~~aGc-eiVRvav~~~~~a~al~~I~~-~~~iPlvADIH 88 (360)
T PRK00366 25 DAPIVVQSMTN--TD--TAD-VEATVAQIKRLARAGC-EIVRVAVPDMEAAAALPEIKK-QLPVPLVADIH 88 (360)
T ss_pred CCcEEEEecCC--CC--chh-HHHHHHHHHHHHHcCC-CEEEEccCCHHHHHhHHHHHH-cCCCCEEEecC
Confidence 44666655421 33 332 4444455556677899 999999887766665443322 23789999954
No 417
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.95 E-value=3.9e+02 Score=22.64 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHhHHHHHhCCCCeEEEEEc-------CCHHHHHHHHHhCCCCCceEEEEcCCchHHHHcCCcc
Q 038822 59 FIEKADELQSKGVDEILCISV-------NDPFVMKAWAKTFPKNKSVKFLADGSAKYTHALGLEL 116 (162)
Q Consensus 59 l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (162)
|....+..++.++.+|.+|.+ +..+-+.+-.+..|+ ++.+++-.+..-.-.+|+..
T Consensus 61 L~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~--~ievIsGeeEArl~~lGv~~ 123 (492)
T COG0248 61 LKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGL--PIEVISGEEEARLIYLGVAS 123 (492)
T ss_pred HHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCC--ceEEeccHHHHHHHHHHHHh
Confidence 444444455555556666644 445666777788888 99999988866666677764
No 418
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=20.92 E-value=1.6e+02 Score=21.84 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=27.8
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.|...++.+.++++|+ .+..+|..+.+..+..++++++
T Consensus 101 ~pg~~e~L~~L~~~g~-~l~IvT~~~~~~~~~~l~~~gl 138 (253)
T TIGR01422 101 IPGVIEVIAYLRARGI-KIGSTTGYTREMMDVVAPEAAL 138 (253)
T ss_pred CCCHHHHHHHHHHCCC-eEEEECCCcHHHHHHHHHHHHh
Confidence 4555667777778888 7777777777777778877765
No 419
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=20.88 E-value=3.2e+02 Score=19.48 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred HHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 60 IEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 60 ~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.+...+++++|+ .++..+.-+......+.+.++.
T Consensus 21 ~~al~~l~~~Gi-~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 21 LEAIRKAESVGI-PVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred HHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHhCC
Confidence 345556667777 6666666666666667777764
No 420
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.58 E-value=1.8e+02 Score=20.17 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=14.9
Q ss_pred CCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcC
Q 038822 47 FTPTCSLKHVPGFIEKADELQSKGVDEILCISVN 80 (162)
Q Consensus 47 ~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d 80 (162)
+||.|.+- ..- +++.++ .+--+..+
T Consensus 15 t~~~C~~a-k~i-------L~~~~V-~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNV-RAI-------LESFRV-KFDERDVS 39 (147)
T ss_pred cChhHHHH-HHH-------HHHCCC-cEEEEECC
Confidence 79999884 322 334466 56555554
No 421
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=20.45 E-value=2e+02 Score=22.96 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=27.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHH-HhCCCCeEEEE
Q 038822 35 GKKVILFGVPGDFTPTCSLKHVPGFIEKADEL-QSKGVDEILCI 77 (162)
Q Consensus 35 gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~-~~~~~~~v~~i 77 (162)
..+++|+|+.|.||-.-.. .+.+..+...+ ...++ .+++|
T Consensus 89 ~~p~lvyfHGGGf~~~S~~--~~~y~~~~~~~a~~~~~-vvvSV 129 (336)
T KOG1515|consen 89 KLPVLVYFHGGGFCLGSAN--SPAYDSFCTRLAAELNC-VVVSV 129 (336)
T ss_pred CceEEEEEeCCccEeCCCC--CchhHHHHHHHHHHcCe-EEEec
Confidence 4689999999999976555 46666666666 34555 55555
No 422
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.44 E-value=2.9e+02 Score=19.46 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=45.5
Q ss_pred CCCceeEehhhhcCCCeEEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEEcCC---HHHHHHHHHhC-----
Q 038822 21 QDQLQQVSVHSLAAGKKVILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCISVND---PFVMKAWAKTF----- 92 (162)
Q Consensus 21 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is~d~---~~~~~~~~~~~----- 92 (162)
|.|| +++.||. .|. + +...-.+|+ | +...+++..+.+.|. .++=++.=+ ....+.|+..+
T Consensus 5 DIDG-TiT~SD~-~G~-i-~~~~G~d~~------h-~g~~~l~~~i~~~GY-~ilYlTaRp~~qa~~Tr~~L~~~~q~~~ 72 (157)
T PF08235_consen 5 DIDG-TITKSDV-LGH-I-LPILGKDWT------H-PGAAELYRKIADNGY-KILYLTARPIGQANRTRSWLAQHQQQGH 72 (157)
T ss_pred eccC-CcCccch-hhh-h-hhccCchhh------h-hcHHHHHHHHHHCCe-EEEEECcCcHHHHHHHHHHHHHHHhCCc
Confidence 5555 5777775 566 2 222322222 3 677788999999999 888887643 45567788877
Q ss_pred CCCCceEEEEcCCc
Q 038822 93 PKNKSVKFLADGSA 106 (162)
Q Consensus 93 ~~~~~~~~l~D~~~ 106 (162)
++ +.-|++.-|++
T Consensus 73 ~l-P~Gpv~~sP~~ 85 (157)
T PF08235_consen 73 NL-PDGPVLLSPDS 85 (157)
T ss_pred cC-CCCCEEECCcc
Confidence 54 23456655543
No 423
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.44 E-value=2.9e+02 Score=19.89 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=20.5
Q ss_pred EEEEEeeCCCCCCCCcCCHhHHHHhHHHHHhCCCCeEEEEE
Q 038822 38 VILFGVPGDFTPTCSLKHVPGFIEKADELQSKGVDEILCIS 78 (162)
Q Consensus 38 vvl~f~~~~~cp~C~~~~~~~l~~~~~~~~~~~~~~v~~is 78 (162)
.||.|- |.+.. .+..++++++.++|+ .+++||
T Consensus 84 RVllfs-----~~~~~---~e~~~~a~~L~~~gi-~~v~Vs 115 (172)
T PF10740_consen 84 RVLLFS-----PFSTD---EEAVALAKQLIEQGI-PFVGVS 115 (172)
T ss_dssp EEEEEE-----S-S-----HHHHHHHHHHHHHT---EEEEE
T ss_pred eEEEEe-----CCCCC---HHHHHHHHHHHHCCC-CEEEEE
Confidence 466664 33333 466788889999999 999999
No 424
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.36 E-value=2.5e+02 Score=18.08 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=24.4
Q ss_pred HhHHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 56 VPGFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
-+++.+..+..+++|+ .+++|..+. .+.++..+++.
T Consensus 56 t~e~i~~~~~a~~~g~-~iI~IT~~~--~l~~~~~~~~~ 91 (119)
T cd05017 56 TEETLSAVEQAKERGA-KIVAITSGG--KLLEMAREHGV 91 (119)
T ss_pred CHHHHHHHHHHHHCCC-EEEEEeCCc--hHHHHHHHcCC
Confidence 4556666666777888 888888665 36666666653
No 425
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=20.35 E-value=1e+02 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=19.0
Q ss_pred eCCCCCCCCcCCHhHHHHhHHHHHhC
Q 038822 44 PGDFTPTCSLKHVPGFIEKADELQSK 69 (162)
Q Consensus 44 ~~~~cp~C~~~~~~~l~~~~~~~~~~ 69 (162)
+.++||.|.. -+.+..+.+.+.+.
T Consensus 3 ~~~~c~gc~~--~~~~~~l~~~l~~~ 26 (178)
T cd02008 3 PPGLCPGCPH--RPSFYALRKAFKKD 26 (178)
T ss_pred CCCcCCCCCC--hHHHHHHHHHhcCC
Confidence 4578999998 38888888888753
No 426
>PRK07758 hypothetical protein; Provisional
Probab=20.25 E-value=66 Score=20.69 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.8
Q ss_pred EeeCCCCCCCCc
Q 038822 42 GVPGDFTPTCSL 53 (162)
Q Consensus 42 f~~~~~cp~C~~ 53 (162)
||-++.||.|+.
T Consensus 16 ~~~~~~~~~~~~ 27 (95)
T PRK07758 16 YYKSSDCPTCPT 27 (95)
T ss_pred eeccCCCCCCcc
Confidence 565666777765
No 427
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=20.21 E-value=1.2e+02 Score=17.93 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=15.5
Q ss_pred ceEEEEcCCc-hHHHHcCCcc
Q 038822 97 SVKFLADGSA-KYTHALGLEL 116 (162)
Q Consensus 97 ~~~~l~D~~~-~~~~~~gv~~ 116 (162)
.+-++.||+. ++++++|+..
T Consensus 35 G~~iIidpe~SeIAkrlgi~~ 55 (64)
T COG2093 35 GLLIIIDPEKSEIAKRLGIKI 55 (64)
T ss_pred cEEEEEcCcHHHHHHHhCCCC
Confidence 5677788875 8889998873
No 428
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=20.08 E-value=3.7e+02 Score=19.82 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=26.8
Q ss_pred HHHHhHHHHHhCCCCeEEEEEcCCHHHHHHHHHhCCC
Q 038822 58 GFIEKADELQSKGVDEILCISVNDPFVMKAWAKTFPK 94 (162)
Q Consensus 58 ~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 94 (162)
.-.+...+++++|. .++..+.-+........++.+.
T Consensus 20 ~~~~~i~~l~~~G~-~~~iaTGR~~~~~~~~~~~~~~ 55 (256)
T TIGR00099 20 STKEALAKLREKGI-KVVLATGRPYKEVKNILKELGL 55 (256)
T ss_pred HHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCC
Confidence 34456666777888 7777777778888888888876
No 429
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.03 E-value=32 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.7
Q ss_pred EeeCCCCCCCCcCCHhHHH
Q 038822 42 GVPGDFTPTCSLKHVPGFI 60 (162)
Q Consensus 42 f~~~~~cp~C~~~~~~~l~ 60 (162)
|-+-.-||.|+.. +|+|-
T Consensus 3 FGpei~CPhCRq~-ipALt 20 (161)
T PF09654_consen 3 FGPEIQCPHCRQT-IPALT 20 (161)
T ss_pred cCCcCcCchhhcc-cchhe
Confidence 3455679999997 99864
Done!