Query 038824
Match_columns 187
No_of_seqs 191 out of 1409
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 6.5E-30 2.2E-34 194.1 4.3 103 12-114 2-105 (128)
2 1h89_C C-MYB, MYB proto-oncoge 99.9 8.4E-29 2.9E-33 194.2 4.9 111 5-115 26-137 (159)
3 3zqc_A MYB3; transcription-DNA 99.9 9.6E-27 3.3E-31 177.4 10.6 90 6-95 23-112 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.2E-26 4.2E-31 171.1 9.8 83 6-88 22-104 (107)
5 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.6E-26 5.5E-31 169.5 10.1 80 7-86 26-105 (105)
6 3osg_A MYB21; transcription-DN 99.9 1.5E-25 5E-30 169.8 10.4 79 7-85 32-110 (126)
7 1h8a_C AMV V-MYB, MYB transfor 99.9 1.9E-25 6.6E-30 169.4 9.0 80 7-86 49-128 (128)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 4.8E-24 1.7E-28 167.0 9.0 81 6-86 79-159 (159)
9 2dim_A Cell division cycle 5-l 99.8 2.4E-21 8.2E-26 132.6 7.0 65 32-96 4-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.8 1.2E-21 4.2E-26 135.3 5.6 58 24-82 10-67 (73)
11 1gv2_A C-MYB, MYB proto-oncoge 99.8 3.4E-21 1.2E-25 141.1 3.7 81 34-114 1-82 (105)
12 2din_A Cell division cycle 5-l 99.8 1.9E-20 6.3E-25 126.7 6.8 60 30-90 2-61 (66)
13 3osg_A MYB21; transcription-DN 99.8 5.8E-21 2E-25 144.5 4.2 84 32-115 6-89 (126)
14 2cu7_A KIAA1915 protein; nucle 99.8 4.4E-20 1.5E-24 127.0 7.7 65 31-96 3-67 (72)
15 2k9n_A MYB24; R2R3 domain, DNA 99.8 2.2E-20 7.5E-25 137.5 3.4 78 37-114 1-79 (107)
16 2d9a_A B-MYB, MYB-related prot 99.8 1.2E-19 4.1E-24 120.5 6.0 56 32-87 3-59 (60)
17 3zqc_A MYB3; transcription-DNA 99.8 6E-20 2E-24 139.7 3.8 79 37-115 2-81 (131)
18 1guu_A C-MYB, MYB proto-oncoge 99.8 7.4E-19 2.5E-23 113.4 6.4 50 35-84 1-51 (52)
19 1ity_A TRF1; helix-turn-helix, 99.8 1.5E-18 5.3E-23 118.2 7.7 62 30-91 3-67 (69)
20 1gvd_A MYB proto-oncogene prot 99.8 1E-18 3.5E-23 112.8 6.3 50 35-84 1-51 (52)
21 1x41_A Transcriptional adaptor 99.7 6.3E-18 2.1E-22 112.3 6.3 53 32-84 3-56 (60)
22 1w0t_A Telomeric repeat bindin 99.7 1.8E-17 6.1E-22 107.4 6.7 49 36-84 1-52 (53)
23 2yum_A ZZZ3 protein, zinc fing 99.7 1.2E-17 4.3E-22 115.4 6.2 59 32-90 3-67 (75)
24 3sjm_A Telomeric repeat-bindin 99.7 5.6E-17 1.9E-21 109.2 6.8 52 35-86 9-63 (64)
25 2elk_A SPCC24B10.08C protein; 99.7 1.1E-16 3.8E-21 105.6 6.7 51 32-82 4-56 (58)
26 2ltp_A Nuclear receptor corepr 99.5 6.3E-18 2.1E-22 120.9 0.0 56 30-85 9-64 (89)
27 2juh_A Telomere binding protei 99.6 5.4E-17 1.9E-21 121.9 3.7 82 31-112 11-103 (121)
28 2roh_A RTBP1, telomere binding 99.6 1.4E-15 4.8E-20 114.3 7.2 79 33-111 27-116 (122)
29 2cqr_A RSGI RUH-043, DNAJ homo 99.6 2.8E-15 9.5E-20 103.4 5.8 52 32-83 13-68 (73)
30 1ign_A Protein (RAP1); RAP1,ye 99.6 1.4E-15 4.7E-20 125.5 5.0 70 33-103 4-79 (246)
31 2aje_A Telomere repeat-binding 99.5 1.9E-14 6.5E-19 105.6 7.6 77 32-108 8-95 (105)
32 2yus_A SWI/SNF-related matrix- 99.5 1.2E-14 4.3E-19 101.6 5.0 48 34-81 15-62 (79)
33 2ckx_A NGTRF1, telomere bindin 99.5 6.4E-14 2.2E-18 98.8 7.1 47 38-84 1-52 (83)
34 1x58_A Hypothetical protein 49 99.4 2.6E-13 8.8E-18 90.2 6.2 49 36-84 7-58 (62)
35 2cjj_A Radialis; plant develop 99.4 5.3E-13 1.8E-17 95.9 6.3 50 36-85 7-60 (93)
36 1ign_A Protein (RAP1); RAP1,ye 99.4 1.9E-12 6.6E-17 106.8 8.5 79 7-85 35-200 (246)
37 3hm5_A DNA methyltransferase 1 99.3 1.1E-11 3.7E-16 88.9 7.7 65 22-90 19-88 (93)
38 2dim_A Cell division cycle 5-l 99.3 1.2E-12 4.1E-17 89.0 1.8 41 5-45 29-69 (70)
39 2eqr_A N-COR1, N-COR, nuclear 99.2 4.3E-11 1.5E-15 79.4 6.3 46 37-82 12-57 (61)
40 2cqq_A RSGI RUH-037, DNAJ homo 99.1 1.4E-10 4.9E-15 79.5 6.0 51 34-85 5-59 (72)
41 2iw5_B Protein corest, REST co 98.9 1.2E-09 4.2E-14 89.4 5.6 48 37-84 133-180 (235)
42 2juh_A Telomere binding protei 98.8 9.9E-10 3.4E-14 82.3 2.9 57 5-61 37-103 (121)
43 2roh_A RTBP1, telomere binding 98.8 4.2E-09 1.4E-13 79.0 4.9 53 6-58 52-114 (122)
44 1fex_A TRF2-interacting telome 98.8 8E-09 2.7E-13 68.1 5.1 47 37-83 2-58 (59)
45 1wgx_A KIAA1903 protein; MYB D 98.7 1.8E-08 6.1E-13 69.1 5.0 47 37-83 8-58 (73)
46 1ug2_A 2610100B20RIK gene prod 98.4 3.9E-07 1.3E-11 64.5 5.7 46 39-84 35-83 (95)
47 2yqk_A Arginine-glutamic acid 98.4 1.1E-06 3.7E-11 58.4 7.1 49 32-80 4-53 (63)
48 2lr8_A CAsp8-associated protei 97.7 5.3E-08 1.8E-12 65.4 0.0 44 39-83 16-62 (70)
49 1ity_A TRF1; helix-turn-helix, 98.3 4.9E-07 1.7E-11 60.9 3.3 36 6-41 31-68 (69)
50 1gvd_A MYB proto-oncogene prot 98.3 5.6E-07 1.9E-11 57.2 3.4 28 7-34 25-52 (52)
51 2d9a_A B-MYB, MYB-related prot 98.3 4.8E-07 1.6E-11 59.2 3.1 31 6-36 29-59 (60)
52 4eef_G F-HB80.4, designed hema 98.2 2.9E-07 1E-11 62.8 1.2 43 37-79 20-66 (74)
53 1guu_A C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.8E-11 55.7 3.2 28 7-34 25-52 (52)
54 4iej_A DNA methyltransferase 1 98.1 8.6E-06 2.9E-10 58.0 7.3 61 25-89 22-87 (93)
55 3sjm_A Telomeric repeat-bindin 98.1 2E-06 6.8E-11 57.3 2.7 32 5-36 31-64 (64)
56 4a69_C Nuclear receptor corepr 97.9 2.4E-05 8.2E-10 55.9 6.0 43 38-80 44-86 (94)
57 2ckx_A NGTRF1, telomere bindin 97.9 1.8E-05 6E-10 55.4 5.1 50 5-54 20-79 (83)
58 2xag_B REST corepressor 1; ami 97.8 1.8E-05 6.1E-10 71.4 5.8 47 37-83 380-426 (482)
59 2crg_A Metastasis associated p 97.8 4.8E-05 1.7E-09 51.4 6.4 42 38-79 9-51 (70)
60 2din_A Cell division cycle 5-l 97.7 2.9E-06 9.8E-11 56.5 -1.1 32 7-39 30-61 (66)
61 2yum_A ZZZ3 protein, zinc fing 97.6 1.8E-05 6.1E-10 53.8 2.0 35 6-40 34-68 (75)
62 1x41_A Transcriptional adaptor 97.6 3.4E-05 1.2E-09 50.3 2.5 30 6-35 29-58 (60)
63 2aje_A Telomere repeat-binding 97.6 8.5E-05 2.9E-09 54.1 4.8 52 5-56 33-94 (105)
64 2ebi_A DNA binding protein GT- 97.4 0.00017 5.9E-09 50.1 4.6 48 37-84 4-65 (86)
65 1w0t_A Telomeric repeat bindin 97.4 8.8E-05 3E-09 47.0 2.7 27 6-32 23-51 (53)
66 2elk_A SPCC24B10.08C protein; 97.1 0.00019 6.5E-09 46.5 2.2 26 6-31 30-56 (58)
67 2cu7_A KIAA1915 protein; nucle 97.0 0.00016 5.5E-09 48.7 0.8 31 7-37 30-60 (72)
68 2llk_A Cyclin-D-binding MYB-li 96.4 0.00013 4.5E-09 49.7 -3.1 41 74-114 9-49 (73)
69 2cqr_A RSGI RUH-043, DNAJ homo 96.2 0.0033 1.1E-07 42.6 3.1 28 5-32 41-68 (73)
70 1irz_A ARR10-B; helix-turn-hel 95.7 0.044 1.5E-06 36.2 6.7 47 36-82 6-57 (64)
71 2ltp_A Nuclear receptor corepr 94.3 0.0028 9.6E-08 44.4 0.0 27 7-33 37-63 (89)
72 1ofc_X ISWI protein; nuclear p 95.0 0.032 1.1E-06 47.5 5.5 51 35-85 210-276 (304)
73 2yus_A SWI/SNF-related matrix- 94.8 0.0096 3.3E-07 40.8 1.5 24 7-30 39-62 (79)
74 1ofc_X ISWI protein; nuclear p 94.7 0.065 2.2E-06 45.6 6.7 47 38-84 111-158 (304)
75 2cjj_A Radialis; plant develop 93.7 0.039 1.3E-06 39.0 2.8 27 5-31 31-57 (93)
76 4b4c_A Chromodomain-helicase-D 93.4 0.084 2.9E-06 41.8 4.6 46 38-83 135-195 (211)
77 2y9y_A Imitation switch protei 92.3 0.2 6.7E-06 43.8 5.7 51 36-86 227-293 (374)
78 4b4c_A Chromodomain-helicase-D 92.2 0.21 7.2E-06 39.4 5.4 49 36-84 6-59 (211)
79 2xag_B REST corepressor 1; ami 92.1 0.028 9.5E-07 50.7 0.0 43 38-80 190-232 (482)
80 2xb0_X Chromo domain-containin 91.6 0.14 4.6E-06 42.9 3.8 28 38-65 169-197 (270)
81 1fex_A TRF2-interacting telome 90.5 0.17 6E-06 32.5 2.7 26 7-32 32-58 (59)
82 2ebi_A DNA binding protein GT- 86.8 0.32 1.1E-05 33.1 2.1 20 13-32 45-64 (86)
83 2xb0_X Chromo domain-containin 78.5 6 0.0002 32.8 7.1 48 37-84 3-55 (270)
84 2o8x_A Probable RNA polymerase 72.7 6.1 0.00021 24.5 4.5 43 40-84 16-58 (70)
85 2li6_A SWI/SNF chromatin-remod 71.1 3.9 0.00013 29.3 3.7 39 46-84 52-98 (116)
86 1ku3_A Sigma factor SIGA; heli 70.9 7 0.00024 24.9 4.6 41 43-84 13-57 (73)
87 2y9y_A Imitation switch protei 69.9 9.5 0.00032 33.1 6.4 46 38-83 124-171 (374)
88 2lm1_A Lysine-specific demethy 69.5 10 0.00034 26.5 5.5 39 46-84 47-97 (107)
89 2jrz_A Histone demethylase jar 69.1 8.6 0.00029 27.6 5.1 39 46-84 43-93 (117)
90 2p7v_B Sigma-70, RNA polymeras 65.9 7.7 0.00026 24.3 3.9 41 43-84 8-52 (68)
91 2eqr_A N-COR1, N-COR, nuclear 65.7 3.6 0.00012 26.1 2.2 24 7-30 33-56 (61)
92 2cxy_A BAF250B subunit, HBAF25 65.0 12 0.0004 27.1 5.2 40 46-85 54-105 (125)
93 2eqy_A RBP2 like, jumonji, at 64.3 13 0.00043 26.9 5.2 39 46-84 45-95 (122)
94 1kkx_A Transcription regulator 64.2 5.8 0.0002 28.9 3.4 40 46-85 51-98 (123)
95 1c20_A DEAD ringer protein; DN 63.2 14 0.00047 26.8 5.3 40 46-85 55-107 (128)
96 2kk0_A AT-rich interactive dom 60.5 13 0.00045 27.6 4.9 40 46-85 67-119 (145)
97 3hug_A RNA polymerase sigma fa 59.3 14 0.00049 24.5 4.5 40 43-83 40-79 (92)
98 2rq5_A Protein jumonji; develo 58.8 14 0.00048 26.8 4.6 53 46-101 45-110 (121)
99 2cqq_A RSGI RUH-037, DNAJ homo 57.2 5.4 0.00019 26.4 2.0 26 6-32 32-57 (72)
100 1wgx_A KIAA1903 protein; MYB D 56.6 7.3 0.00025 26.0 2.5 27 6-32 32-58 (73)
101 2jxj_A Histone demethylase jar 54.0 9 0.00031 26.3 2.8 39 46-84 39-89 (96)
102 3ulq_B Transcriptional regulat 51.9 37 0.0013 22.7 5.7 45 37-84 27-71 (90)
103 1x3u_A Transcriptional regulat 50.3 33 0.0011 21.5 5.0 42 40-84 17-58 (79)
104 1tty_A Sigma-A, RNA polymerase 48.8 28 0.00096 22.8 4.6 41 43-84 21-65 (87)
105 3c57_A Two component transcrip 48.4 31 0.0011 23.1 4.8 43 39-84 27-69 (95)
106 1or7_A Sigma-24, RNA polymeras 48.1 31 0.0011 25.3 5.2 33 51-84 151-183 (194)
107 1x58_A Hypothetical protein 49 44.6 20 0.00068 23.1 3.0 26 7-32 29-57 (62)
108 1je8_A Nitrate/nitrite respons 43.5 43 0.0015 21.7 4.8 43 39-84 21-63 (82)
109 1ig6_A MRF-2, modulator recogn 43.4 13 0.00045 26.0 2.3 39 46-84 36-87 (107)
110 2q1z_A RPOE, ECF SIGE; ECF sig 43.3 20 0.00067 26.2 3.4 38 46-84 141-178 (184)
111 3i4p_A Transcriptional regulat 41.8 27 0.00094 25.7 4.0 45 43-88 3-48 (162)
112 1xsv_A Hypothetical UPF0122 pr 41.7 49 0.0017 23.0 5.2 40 43-83 28-67 (113)
113 3hm5_A DNA methyltransferase 1 41.5 6.5 0.00022 27.5 0.3 35 75-113 21-55 (93)
114 2jpc_A SSRB; DNA binding prote 41.4 54 0.0018 19.4 4.8 38 45-84 3-40 (61)
115 2yqf_A Ankyrin-1; death domain 40.3 52 0.0018 22.9 5.1 36 40-76 13-48 (111)
116 1rp3_A RNA polymerase sigma fa 37.2 53 0.0018 24.7 5.1 36 47-83 194-229 (239)
117 1fse_A GERE; helix-turn-helix 36.6 72 0.0025 19.4 5.4 44 38-84 10-53 (74)
118 3mzy_A RNA polymerase sigma-H 36.1 49 0.0017 23.2 4.5 30 53-83 121-150 (164)
119 2jvw_A Uncharacterized protein 36.0 31 0.0011 23.7 3.1 23 45-69 18-40 (88)
120 2rnj_A Response regulator prot 35.5 43 0.0015 22.0 3.8 43 39-84 29-71 (91)
121 2iw5_B Protein corest, REST co 35.3 19 0.00065 29.2 2.2 25 8-32 155-179 (235)
122 2o71_A Death domain-containing 35.1 49 0.0017 23.5 4.3 42 31-76 13-54 (115)
123 2of5_H Leucine-rich repeat and 33.8 46 0.0016 23.6 4.0 31 45-76 13-43 (118)
124 2of5_A Death domain-containing 33.5 47 0.0016 23.6 3.9 42 31-76 13-54 (114)
125 2dbb_A Putative HTH-type trans 32.2 95 0.0032 22.1 5.6 45 43-88 9-54 (151)
126 1s7o_A Hypothetical UPF0122 pr 32.0 82 0.0028 22.0 5.0 42 40-83 23-64 (113)
127 2e1c_A Putative HTH-type trans 31.3 71 0.0024 23.8 4.9 45 43-88 27-72 (171)
128 1p4w_A RCSB; solution structur 30.0 1.3E+02 0.0044 20.4 6.7 45 37-84 32-76 (99)
129 2cyy_A Putative HTH-type trans 28.4 96 0.0033 22.1 5.1 45 43-88 7-52 (151)
130 1wxp_A THO complex subunit 1; 27.3 83 0.0028 21.8 4.3 30 46-76 19-48 (110)
131 1i1g_A Transcriptional regulat 27.1 1.5E+02 0.0052 20.5 5.9 44 44-88 5-49 (141)
132 1tc3_C Protein (TC3 transposas 25.8 86 0.0029 16.9 5.5 37 39-77 5-41 (51)
133 3e7l_A Transcriptional regulat 25.2 1.2E+02 0.0041 18.5 4.6 24 43-66 19-42 (63)
134 1ntc_A Protein (nitrogen regul 24.3 1.5E+02 0.0052 19.5 5.1 33 42-75 50-82 (91)
135 3clo_A Transcriptional regulat 22.5 1.1E+02 0.0039 23.9 4.8 43 39-84 197-239 (258)
136 3cz6_A DNA-binding protein RAP 22.0 55 0.0019 25.1 2.6 28 22-49 98-126 (168)
137 3t72_q RNA polymerase sigma fa 20.5 1.8E+02 0.006 19.8 4.9 40 44-84 23-66 (99)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=6.5e-30 Score=194.06 Aligned_cols=103 Identities=23% Similarity=0.410 Sum_probs=79.9
Q ss_pred hccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 038824 12 VKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90 (187)
Q Consensus 12 ~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~ 90 (187)
...++|||++||++||.++|+|++++++||+|||++|+++|..||. +|..||..|||||+.||++||..+|+|.+.+++
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~ 81 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence 4567899999999999999999999999999999999999999995 799999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCC
Q 038824 91 IDPVTHKPFSQILADYGNIGGLPK 114 (187)
Q Consensus 91 ~t~~~~~~~~~~~~~~g~~~~~~~ 114 (187)
||++|+..+..++..+|+.|+.++
T Consensus 82 WT~eEd~~L~~~~~~~G~~W~~Ia 105 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRLGNRWAEIA 105 (128)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHG
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999887655
No 2
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=8.4e-29 Score=194.21 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=90.2
Q ss_pred chhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 5 PCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 5 ~~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
+..|..+....++|+++||++||.++|+|++++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|+
T Consensus 26 ~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 26 TDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp -----------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 34678888889999999999999999999999999999999999999999995 79999999999999999999999999
Q ss_pred hhhhhCCCCCCCcchHHHHHHHhcCCCCCCCC
Q 038824 84 KKLTEMGIDPVTHKPFSQILADYGNIGGLPKS 115 (187)
Q Consensus 84 ~~~~~~~~t~~~~~~~~~~~~~~g~~~~~~~~ 115 (187)
|.+.+.+||++|+..+.+++..||+.|..++.
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~ 137 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAK 137 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHT
T ss_pred ccccccCCChHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999998875553
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.94 E-value=9.6e-27 Score=177.37 Aligned_cols=90 Identities=36% Similarity=0.594 Sum_probs=84.4
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
..|+.+....+||+++||++||.++|+|.+++++||+|||++|+++|..||++|+.||.+|||||+++|++||+++|++.
T Consensus 23 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 23 QNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCC
Q 038824 86 LTEMGIDPVT 95 (187)
Q Consensus 86 ~~~~~~t~~~ 95 (187)
+....++.+.
T Consensus 103 ~~~~~~~~~~ 112 (131)
T 3zqc_A 103 ISTNSNHKEI 112 (131)
T ss_dssp CCCCTTSCCC
T ss_pred hhcCCCcccc
Confidence 9887765443
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=1.2e-26 Score=171.08 Aligned_cols=83 Identities=27% Similarity=0.554 Sum_probs=78.1
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
..|..+....++|+++||++||.++|+|++++++||+|||++|+++|..||++|..||.+|||||+++|++||+.++++.
T Consensus 22 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 22 KDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp SCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 45778888889999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hhh
Q 038824 86 LTE 88 (187)
Q Consensus 86 ~~~ 88 (187)
.+.
T Consensus 102 ~~~ 104 (107)
T 2k9n_A 102 AKH 104 (107)
T ss_dssp HSS
T ss_pred HHh
Confidence 654
No 5
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.94 E-value=1.6e-26 Score=169.55 Aligned_cols=80 Identities=44% Similarity=0.804 Sum_probs=74.7
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKL 86 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~ 86 (187)
.|+.+....++|+++||++||.++|+|++++++||+|||++|+++|..||++|+.||..|||||+++|++||+.++++++
T Consensus 26 ~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 26 RWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred cHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 47888888999999999999999999999999999999999999999999999999999999999999999999998754
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=1.5e-25 Score=169.83 Aligned_cols=79 Identities=35% Similarity=0.654 Sum_probs=75.8
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
.|+.+....++|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||..|||||+++|++||..++++.
T Consensus 32 ~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 32 DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 5788888999999999999999999999999999999999999999999999999999999999999999999988764
No 7
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.92 E-value=1.9e-25 Score=169.35 Aligned_cols=80 Identities=45% Similarity=0.781 Sum_probs=75.4
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKL 86 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~ 86 (187)
.|+.+....+||+++||++||.++|+|.+++++||+|||++|+++|..||++|+.||++|||||+++|++||+.++++++
T Consensus 49 ~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 49 RWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 57888888999999999999999999999999999999999999999999999999999999999999999999988753
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.90 E-value=4.8e-24 Score=167.04 Aligned_cols=81 Identities=43% Similarity=0.782 Sum_probs=75.8
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
..|..+.+..+|||++||+.||.++|+|.+++++||+|||.+|++++..||++|+.||++|||||+++|++||+.+++++
T Consensus 79 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 79 KRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred ccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 35788888999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred h
Q 038824 86 L 86 (187)
Q Consensus 86 ~ 86 (187)
+
T Consensus 159 ~ 159 (159)
T 1h89_C 159 V 159 (159)
T ss_dssp -
T ss_pred C
Confidence 3
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=132.57 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=63.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCc
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTH 96 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~ 96 (187)
.|.+++++||+|||++|+++|..|| .+|..||..|+|||+.||++||+++|+|.+.+++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5889999999999999999999999 7999999999999999999999999999999999999987
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=135.31 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=47.2
Q ss_pred HHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 038824 24 RLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKL 82 (187)
Q Consensus 24 r~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l 82 (187)
.-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998653
No 11
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.82 E-value=3.4e-21 Score=141.05 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=76.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCCC
Q 038824 34 DLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGL 112 (187)
Q Consensus 34 ~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~~ 112 (187)
+|++++||+|||++|+++|..||. +|..||..|||||+.||+.||..+|.|.+.+++||++|+..+..++..+|+.|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 578999999999999999999995 7999999999999999999999999999999999999999999999999998875
Q ss_pred CC
Q 038824 113 PK 114 (187)
Q Consensus 113 ~~ 114 (187)
++
T Consensus 81 Ia 82 (105)
T 1gv2_A 81 IA 82 (105)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=126.73 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=57.7
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 038824 30 YLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90 (187)
Q Consensus 30 ~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~ 90 (187)
+|+|.+++++||+|||++|+++|..||.+|..||. |+|||++||++||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8999999999999999999988764
No 13
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.81 E-value=5.8e-21 Score=144.49 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=79.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCC
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGG 111 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~ 111 (187)
.+.+++++||+|||++|+++|..||.+|..||..|||||+.||+.||..+|.+.+.+++||++||..+..++..||+.|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 038824 112 LPKS 115 (187)
Q Consensus 112 ~~~~ 115 (187)
.++.
T Consensus 86 ~Ia~ 89 (126)
T 3osg_A 86 IIAK 89 (126)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6553
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.81 E-value=4.4e-20 Score=127.03 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=60.3
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCc
Q 038824 31 LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTH 96 (187)
Q Consensus 31 L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~ 96 (187)
++|.+++++||+|||++|+++|..||.+|..||.+|||||++|||+||+.++++.++. ++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 6899999999999999999999999999999999999999999999999999998777 6666554
No 15
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.79 E-value=2.2e-20 Score=137.51 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCCCCC
Q 038824 37 HESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPK 114 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~~~~ 114 (187)
|++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.|.+.+++||++|+..+..++..||+.|+.++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 579999999999999999995 899999999999999999999999999999999999999999999999999887554
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-19 Score=120.45 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLT 87 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~ 87 (187)
+|.+++++||+|||++|+++|..|| ++|..||.+|+|||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5899999999999999999999999 6999999999999999999999999998763
No 17
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.78 E-value=6e-20 Score=139.69 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCCCCCC
Q 038824 37 HESFTPQEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKS 115 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~~~~~ 115 (187)
||+||+|||++|+++|..|| .+|..||..|||||+.||+.||..+|.+.+.+++||++||..+.+++..+|+.|+.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999 78999999999999999999999999999999999999999999999999999886664
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.76 E-value=7.4e-19 Score=113.37 Aligned_cols=50 Identities=32% Similarity=0.614 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 35 LKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 35 l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
|++++||+|||++|+++|..||. +|..||..|||||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 899999999999999999999999986
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.76 E-value=1.5e-18 Score=118.25 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=57.6
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 038824 30 YLRPDLKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLP--GRTDNDVKNYWNTKLRKKLTEMGI 91 (187)
Q Consensus 30 ~L~P~l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~q~k~rw~~~l~~~~~~~~~ 91 (187)
...|..++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 456788999999999999999999999 79999999999 999999999999999999887654
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.76 E-value=1e-18 Score=112.78 Aligned_cols=50 Identities=32% Similarity=0.694 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 35 LKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 35 l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
|++++||+|||++|+++|..||. +|..||..|+|||+.||++||+++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 67899999999999999999996 699999999999999999999999986
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=6.3e-18 Score=112.32 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
.|.+.+++||+|||++|+++|..|| ++|..||++|+|||+.||++||+.+|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 5789999999999999999999999 7999999999999999999999998864
No 22
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.71 E-value=1.8e-17 Score=107.39 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhh
Q 038824 36 KHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLP--GRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~q~k~rw~~~l~~ 84 (187)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999999874
No 23
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=115.36 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG------SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G------~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~ 90 (187)
+|++++++||+|||++|+++|..|| .+|..||.+|+|||+.||++||+.+|.+.++.+-
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999 6899999999999999999999999998776653
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=5.6e-17 Score=109.20 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhhhh
Q 038824 35 LKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLP--GRTDNDVKNYWNTKLRKKL 86 (187)
Q Consensus 35 l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~q~k~rw~~~l~~~~ 86 (187)
.++++||+|||++|+++|..|| .+|..||+.++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 68999999865 9999999999999998765
No 25
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.67 E-value=1.1e-16 Score=105.62 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHh
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG-SRWSIIAQQLP-GRTDNDVKNYWNTKL 82 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lp-gRt~~q~k~rw~~~l 82 (187)
++.+.+++||+|||++|+++|..|| .+|..||.+|+ |||+.||++||+.++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567789999999999999999999 89999999999 999999999998764
No 26
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.48 E-value=6.3e-18 Score=120.86 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=53.3
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 30 YLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 30 ~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
.+.|.+++++||+|||++|+++|..||.+|..||..|+|||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 57899999999999999999999999999999999999999999999999998863
No 27
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.64 E-value=5.4e-17 Score=121.88 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=71.3
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCCCCcchH
Q 038824 31 LRPDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQ----LPGRTDNDVKNYWNTKLR-----KKLTEM-GIDPVTHKPF 99 (187)
Q Consensus 31 L~P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~----lpgRt~~q~k~rw~~~l~-----~~~~~~-~~t~~~~~~~ 99 (187)
+.+..++++||+|||+.|+++|..||. +|+.|+.. |+|||+.+||+||.++++ |.++++ ++++++...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456788999999999999999999995 99999998 499999999999999999 666665 5555556788
Q ss_pred HHHHHHhcCCCCC
Q 038824 100 SQILADYGNIGGL 112 (187)
Q Consensus 100 ~~~~~~~g~~~~~ 112 (187)
..++..+||.++.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999998764
No 28
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.60 E-value=1.4e-15 Score=114.31 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=69.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhC----CCCCHHHHHHHHHHHh-----hhhhhhCCCCCCC-cchHHH
Q 038824 33 PDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQL----PGRTDNDVKNYWNTKL-----RKKLTEMGIDPVT-HKPFSQ 101 (187)
Q Consensus 33 P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~l----pgRt~~q~k~rw~~~l-----~~~~~~~~~t~~~-~~~~~~ 101 (187)
+.-++++||+|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||.+++ .+.++++.++|++ ...+..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3456789999999999999999995 999999973 9999999999999999 5778888888888 678889
Q ss_pred HHHHhcCCCC
Q 038824 102 ILADYGNIGG 111 (187)
Q Consensus 102 ~~~~~g~~~~ 111 (187)
++..+||...
T Consensus 107 ~h~~~g~~~~ 116 (122)
T 2roh_A 107 AQAYWSVDSS 116 (122)
T ss_dssp HHHHHHSSCS
T ss_pred HHHHHhhHHh
Confidence 9999998654
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=2.8e-15 Score=103.38 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIG----SRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
.+.+.+++||+|||.+|++++..|| .+|..||.+|||||++||++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 689999999999999999999998764
No 30
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.57 E-value=1.4e-15 Score=125.53 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHHH
Q 038824 33 PDLKHESFTPQEEEMIIRLHAAIGSR------WSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQIL 103 (187)
Q Consensus 33 P~l~k~~wT~eED~~Ll~~v~~~G~~------W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~ 103 (187)
+.+++++||+|||++|+++|+++|++ |..||+.|||||++|||+||+.+|++.+... |+..++..+....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~ 79 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDD 79 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhcc
Confidence 56789999999999999999999865 9999999999999999999999999998844 7777766554433
No 31
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.53 E-value=1.9e-14 Score=105.61 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=61.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhC----CCCCHHHHHHHHHHHhh-----hhhhhCCCCCCCcc-hHH
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQL----PGRTDNDVKNYWNTKLR-----KKLTEMGIDPVTHK-PFS 100 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~l----pgRt~~q~k~rw~~~l~-----~~~~~~~~t~~~~~-~~~ 100 (187)
.+..++++||+|||+.|+++|..||. +|+.|+..+ +|||+.+||+||.++++ +.++++.-.|.+-. .+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 45678899999999999999999995 999999965 89999999999999996 66666555555533 266
Q ss_pred HHHHHhcC
Q 038824 101 QILADYGN 108 (187)
Q Consensus 101 ~~~~~~g~ 108 (187)
.+++.+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
No 32
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=101.55 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 038824 34 DLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTK 81 (187)
Q Consensus 34 ~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~ 81 (187)
...+++||+|||++|+++|..||.+|..||.+|++||+.||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999765
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.48 E-value=6.4e-14 Score=98.78 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhhh
Q 038824 38 ESFTPQEEEMIIRLHAAIGS-RWSIIAQQ----LPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~----lpgRt~~q~k~rw~~~l~~ 84 (187)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||.++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999995 99999996 8999999999999999963
No 34
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=2.6e-13 Score=90.20 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHh---hhCCCCCHHHHHHHHHHHhhh
Q 038824 36 KHESFTPQEEEMIIRLHAAIGSRWSIIA---QQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G~~W~~Ia---~~lpgRt~~q~k~rw~~~l~~ 84 (187)
++.+||+|||+.|++.|.+||.+|..|+ .+++|||+..+|++|.++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 578999999999999988764
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.38 E-value=5.3e-13 Score=95.94 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 36 KHESFTPQEEEMIIRLHAAIG----SRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
.+++||.|||.+|++++..|| ++|..||..|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 367999999999999999996 67999999999999999999999987663
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=1.9e-12 Score=106.80 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=71.3
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCC-----------------------------CCCCCHHHHHHHHHHHHH-h-
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLK-----------------------------HESFTPQEEEMIIRLHAA-I- 55 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~-----------------------------k~~wT~eED~~Ll~~v~~-~- 55 (187)
.|..+++.++|||+.|||.||..+|+|.|. +..||.|||..|+..+.. |
T Consensus 35 ~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~ 114 (246)
T 1ign_A 35 LYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFY 114 (246)
T ss_dssp HHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHh
Confidence 388899999999999999999999999997 899999999999998876 2
Q ss_pred ----------------------------------------------------CC----ChHHHhhhCCCCCHHHHHHHHH
Q 038824 56 ----------------------------------------------------GS----RWSIIAQQLPGRTDNDVKNYWN 79 (187)
Q Consensus 56 ----------------------------------------------------G~----~W~~Ia~~lpgRt~~q~k~rw~ 79 (187)
|. .|.+||+.+|+||++++|+||.
T Consensus 115 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyr 194 (246)
T 1ign_A 115 RDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFR 194 (246)
T ss_dssp HHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHH
T ss_pred hhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHH
Confidence 21 6999999999999999999999
Q ss_pred HHhhhh
Q 038824 80 TKLRKK 85 (187)
Q Consensus 80 ~~l~~~ 85 (187)
..|+..
T Consensus 195 Kfl~~~ 200 (246)
T 1ign_A 195 KFLLAY 200 (246)
T ss_dssp HTHHHH
T ss_pred HHHhhc
Confidence 888754
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=88.90 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=59.4
Q ss_pred HHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 038824 22 SCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQL-----PGRTDNDVKNYWNTKLRKKLTEMG 90 (187)
Q Consensus 22 qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~l-----pgRt~~q~k~rw~~~l~~~~~~~~ 90 (187)
=+.++|.++|.| .+||.||+..|++|+..||.+|..|+..+ ++||..++|+||..+.++.+...+
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 367999999988 79999999999999999999999999999 589999999999999988776654
No 38
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=89.05 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=38.0
Q ss_pred chhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHH
Q 038824 5 PCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEE 45 (187)
Q Consensus 5 ~~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED 45 (187)
+..|+.+.....+||++||++||.++|+|.|++++||+|||
T Consensus 29 ~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 29 KNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 34688888889999999999999999999999999999997
No 39
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.3e-11 Score=79.40 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 038824 37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKL 82 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l 82 (187)
.++||+||+.++++++..||.+|..||.+||+||..+|.++|....
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999997544
No 40
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.09 E-value=1.4e-10 Score=79.46 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 34 DLKHESFTPQEEEMIIRLHAAIG----SRWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 34 ~l~k~~wT~eED~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
..+.++||.|||.+|.+++..|+ .+|..||.+| |||..+|++||..+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 5699999998 999999999999887654
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.90 E-value=1.2e-09 Score=89.39 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..+||+||+.++++++..||.+|..||+.+++||..||+++|+.+.++
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999987764
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.85 E-value=9.9e-10 Score=82.29 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=51.3
Q ss_pred chhhHhhhccC----CCCChHHHHHHHHhhhC-----CCCCCC-CCCHHHHHHHHHHHHHhCCChHH
Q 038824 5 PCCDKLNVKKG----LRRCGKSCRLRWTNYLR-----PDLKHE-SFTPQEEEMIIRLHAAIGSRWSI 61 (187)
Q Consensus 5 ~~~~~~~~~~g----~~Rt~~qCr~RW~~~L~-----P~l~k~-~wT~eED~~Ll~~v~~~G~~W~~ 61 (187)
...|..|++.. .+||+.||++||+++|+ |.++++ +|++||+.+|+.++..+|++|+.
T Consensus 37 ~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 37 TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 34577777764 79999999999999999 999999 99999999999999999999976
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.80 E-value=4.2e-09 Score=78.99 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=47.5
Q ss_pred hhhHhhhccC----CCCChHHHHHHHHhhh-----CCCCCCCCCCHHH-HHHHHHHHHHhCCC
Q 038824 6 CCDKLNVKKG----LRRCGKSCRLRWTNYL-----RPDLKHESFTPQE-EEMIIRLHAAIGSR 58 (187)
Q Consensus 6 ~~~~~~~~~g----~~Rt~~qCr~RW~~~L-----~P~l~k~~wT~eE-D~~Ll~~v~~~G~~ 58 (187)
..|+.+++.. .+||+.||++||++++ +|.++++.|+++| +.+|++++..+|++
T Consensus 52 g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 52 GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhhH
Confidence 4577777764 7999999999999999 8999999999999 89999999999964
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.78 E-value=8e-09 Score=68.06 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHHhh-hCCCCCHHHHHHHHHHHhh
Q 038824 37 HESFTPQEEEMIIRLHAAI--------GSR-WSIIAQ-QLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~--------G~~-W~~Ia~-~lpgRt~~q~k~rw~~~l~ 83 (187)
|.+||+|||++|+++|..+ |+. |..+|. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 7999999999999988764
No 45
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=1.8e-08 Score=69.06 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 37 HESFTPQEEEMIIRLHAAIG----SRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
...||.+|+.+|.++...|+ .+|..||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 35899999999999999998 369999999999999999999987754
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.41 E-value=3.9e-07 Score=64.49 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 39 SFTPQEEEMIIRLHAAIGS---RWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~---~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
-||.|||..||..+.+-|. .|..||..|.+|+.+||++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5999999999999999996 799999999999999999999988763
No 47
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=58.38 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=45.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHHH
Q 038824 32 RPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQ-QLPGRTDNDVKNYWNT 80 (187)
Q Consensus 32 ~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~-~lpgRt~~q~k~rw~~ 80 (187)
.|.+...+||+||-.+..+.+..||..|..|++ .++.||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 588899999999999999999999999999999 5899999999998853
No 48
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.70 E-value=5.3e-08 Score=65.36 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 39 SFTPQEEEMIIRLHAAIGS---RWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~---~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
-||.|||..||..+.+-|. .|..||..| +||++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 799999999 9999999999998875
No 49
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.27 E-value=4.9e-07 Score=60.86 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=31.5
Q ss_pred hhhHhhhccCC--CCChHHHHHHHHhhhCCCCCCCCCC
Q 038824 6 CCDKLNVKKGL--RRCGKSCRLRWTNYLRPDLKHESFT 41 (187)
Q Consensus 6 ~~~~~~~~~g~--~Rt~~qCr~RW~~~L~P~l~k~~wT 41 (187)
..|..++.... |||+.||++||.++|+|.|.++..+
T Consensus 31 ~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 31 GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45777888887 9999999999999999999998764
No 50
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.27 E-value=5.6e-07 Score=57.17 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=25.7
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCC
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPD 34 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~ 34 (187)
-|..+.+..+|||++||++||.++|+|+
T Consensus 25 ~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 25 RWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4788888899999999999999999995
No 51
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.26 E-value=4.8e-07 Score=59.18 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCCC
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDLK 36 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~ 36 (187)
-.|..+.+..++||++||++||.++|+|+++
T Consensus 29 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 29 QDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp TCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4688888899999999999999999999986
No 52
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.21 E-value=2.9e-07 Score=62.79 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChHHHhhhCCCCCHHHHHHHHH
Q 038824 37 HESFTPQEEEMIIRLHAAIGS----RWSIIAQQLPGRTDNDVKNYWN 79 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~----~W~~Ia~~lpgRt~~q~k~rw~ 79 (187)
..+||.+|+.++-++...|+. +|..||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 347999999999999999983 7999999999999999999884
No 53
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.17 E-value=1.1e-06 Score=55.70 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.8
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCC
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPD 34 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~ 34 (187)
.|+.+.+..+|||++||+.||.++|+|+
T Consensus 25 ~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 25 DWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp CHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5788888899999999999999999995
No 54
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.12 E-value=8.6e-06 Score=58.04 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=52.0
Q ss_pred HHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCC-----CCCHHHHHHHHHHHhhhhhhhC
Q 038824 25 LRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLP-----GRTDNDVKNYWNTKLRKKLTEM 89 (187)
Q Consensus 25 ~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lp-----gRt~~q~k~rw~~~l~~~~~~~ 89 (187)
+.|..+|. ...||.||...|++|++.|+-+|..|+..+. .||-.++|.||....++.+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44556665 3689999999999999999999999999873 7999999999999988766554
No 55
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.05 E-value=2e-06 Score=57.28 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=26.9
Q ss_pred chhhHhhhccCC--CCChHHHHHHHHhhhCCCCC
Q 038824 5 PCCDKLNVKKGL--RRCGKSCRLRWTNYLRPDLK 36 (187)
Q Consensus 5 ~~~~~~~~~~g~--~Rt~~qCr~RW~~~L~P~l~ 36 (187)
+..|+.+++..+ +||+.||++||.++++|+|+
T Consensus 31 ~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 31 EGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp TTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 456788877644 99999999999999999885
No 56
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.88 E-value=2.4e-05 Score=55.87 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 038824 38 ESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNT 80 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~ 80 (187)
..||+||-.+..+....||.+|..||..||+||..+|-.+|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 4799999999999999999999999999999999999998853
No 57
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.88 E-value=1.8e-05 Score=55.38 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=41.0
Q ss_pred chhhHhhhcc----CCCCChHHHHHHHHhhh-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 038824 5 PCCDKLNVKK----GLRRCGKSCRLRWTNYL-----RPDLKHE-SFTPQEEEMIIRLHAA 54 (187)
Q Consensus 5 ~~~~~~~~~~----g~~Rt~~qCr~RW~~~L-----~P~l~k~-~wT~eED~~Ll~~v~~ 54 (187)
...|+.+++. ..+||+.||++||+++| +|.++++ ++.+++..+++.+++.
T Consensus 20 ~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 20 TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 3457777775 67999999999999998 7887776 7888888999988764
No 58
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.84 E-value=1.8e-05 Score=71.35 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
..+||.||-.++++.+.+||..|..||..+..||..|||++|..+.+
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999975443
No 59
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.82 E-value=4.8e-05 Score=51.36 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHH
Q 038824 38 ESFTPQEEEMIIRLHAAIGSRWSIIAQ-QLPGRTDNDVKNYWN 79 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G~~W~~Ia~-~lpgRt~~q~k~rw~ 79 (187)
.+||+||-.+..+.+..||..|..|++ .+|+||..+|...|.
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 489999999999999999999999999 599999999999986
No 60
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=2.9e-06 Score=56.49 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=27.3
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCCCCC
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHES 39 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~ 39 (187)
.|..+.+ .+|||++||+.||.++|+|.++++.
T Consensus 30 ~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 30 QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 5677777 7789999999999999999887654
No 61
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.8e-05 Score=53.83 Aligned_cols=35 Identities=11% Similarity=-0.160 Sum_probs=31.0
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCCCCCCC
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESF 40 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k~~w 40 (187)
--|..+.....+||++||+.||.+||.+.++.+..
T Consensus 34 ~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 34 RRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57888899999999999999999999998887643
No 62
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.56 E-value=3.4e-05 Score=50.32 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=26.4
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhCCCC
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLRPDL 35 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l 35 (187)
.-|+.+.+..++||++||++||.++|.+..
T Consensus 29 ~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 29 GNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp TCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 458888888999999999999999998753
No 63
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.56 E-value=8.5e-05 Score=54.10 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=43.5
Q ss_pred chhhHhhhccC----CCCChHHHHHHHHhhh-----CCCCCCCCCCHHHHHH-HHHHHHHhC
Q 038824 5 PCCDKLNVKKG----LRRCGKSCRLRWTNYL-----RPDLKHESFTPQEEEM-IIRLHAAIG 56 (187)
Q Consensus 5 ~~~~~~~~~~g----~~Rt~~qCr~RW~~~L-----~P~l~k~~wT~eED~~-Ll~~v~~~G 56 (187)
...|+.|++.. .+||+.+|++||++.+ +|.++++.-+++|-.. ++++++.+|
T Consensus 33 ~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~~ 94 (105)
T 2aje_A 33 TGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWT 94 (105)
T ss_dssp SSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45688888865 7999999999999999 7999999888877666 888887766
No 64
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.40 E-value=0.00017 Score=50.10 Aligned_cols=48 Identities=17% Similarity=0.439 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChHHHhhhC----CCCCHHHHHHHHHHHhhh
Q 038824 37 HESFTPQEEEMIIRLHAAIG----------SRWSIIAQQL----PGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G----------~~W~~Ia~~l----pgRt~~q~k~rw~~~l~~ 84 (187)
...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999987532 1499999987 379999999999988775
No 65
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.39 E-value=8.8e-05 Score=47.04 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=23.2
Q ss_pred hhhHhhhccCC--CCChHHHHHHHHhhhC
Q 038824 6 CCDKLNVKKGL--RRCGKSCRLRWTNYLR 32 (187)
Q Consensus 6 ~~~~~~~~~g~--~Rt~~qCr~RW~~~L~ 32 (187)
..|..+....+ +||+.||++||.++|+
T Consensus 23 ~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 23 GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 45777777777 9999999999999986
No 66
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.13 E-value=0.00019 Score=46.46 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=21.7
Q ss_pred hhhHhhhccCC-CCChHHHHHHHHhhh
Q 038824 6 CCDKLNVKKGL-RRCGKSCRLRWTNYL 31 (187)
Q Consensus 6 ~~~~~~~~~g~-~Rt~~qCr~RW~~~L 31 (187)
--|+.+.+... +||++||++||.+++
T Consensus 30 ~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 30 GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 35777777777 999999999999875
No 67
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.98 E-value=0.00016 Score=48.72 Aligned_cols=31 Identities=13% Similarity=-0.112 Sum_probs=28.2
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCCCCCC
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKH 37 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P~l~k 37 (187)
.|..+.+..+|||+.||+.||.++|++.++.
T Consensus 30 ~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 30 RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6788888999999999999999999998776
No 68
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.37 E-value=0.00013 Score=49.67 Aligned_cols=41 Identities=7% Similarity=-0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCCCCC
Q 038824 74 VKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPK 114 (187)
Q Consensus 74 ~k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~~~~ 114 (187)
+.-||.++|+|.+.+++||++||..+.+++..+|+.|+.++
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA 49 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIG 49 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Confidence 45689999999999999999999999999999999987554
No 69
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.19 E-value=0.0033 Score=42.61 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.7
Q ss_pred chhhHhhhccCCCCChHHHHHHHHhhhC
Q 038824 5 PCCDKLNVKKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 5 ~~~~~~~~~~g~~Rt~~qCr~RW~~~L~ 32 (187)
+-.|..+.+..+|||.+||+.||.+++.
T Consensus 41 ~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 41 SDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4578889999999999999999998764
No 70
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.66 E-value=0.044 Score=36.16 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hHHHhhhC--CCCCHHHHHHHHHHHh
Q 038824 36 KHESFTPQEEEMIIRLHAAIGSR---WSIIAQQL--PGRTDNDVKNYWNTKL 82 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G~~---W~~Ia~~l--pgRt~~q~k~rw~~~l 82 (187)
.+-.||+|.-+..+++|..+|.. +..|.+.| +|.|-.+|+-|.+.+-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999944 78999886 7999999999988653
No 71
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.34 E-value=0.0028 Score=44.40 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=24.1
Q ss_pred hhHhhhccCCCCChHHHHHHHHhhhCC
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNYLRP 33 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~L~P 33 (187)
-|..+....+|||+.||+.||.++|+-
T Consensus 37 ~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 37 NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 478888889999999999999999864
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.99 E-value=0.032 Score=47.46 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----ChHHHhh------------hCCCCCHHHHHHHHHHHhhhh
Q 038824 35 LKHESFTPQEEEMIIRLHAAIGS----RWSIIAQ------------QLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 35 l~k~~wT~eED~~Ll~~v~~~G~----~W~~Ia~------------~lpgRt~~q~k~rw~~~l~~~ 85 (187)
-+...||++||..||-++..||- .|..|.. ++.-||+.+|..|.+++++-.
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 35568999999999999999994 5999972 456799999999999999753
No 73
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.82 E-value=0.0096 Score=40.83 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=21.2
Q ss_pred hhHhhhccCCCCChHHHHHHHHhh
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNY 30 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~ 30 (187)
.|+.+.+...+||+.||+.||.++
T Consensus 39 ~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 39 DWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 477778888899999999999998
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.71 E-value=0.065 Score=45.59 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 38 ESFTPQEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+.||..+....+.++..|| ..|..||..++|+|..+|+.++......
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999 6799999999999999998877665543
No 75
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=93.74 E-value=0.039 Score=38.97 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=23.5
Q ss_pred chhhHhhhccCCCCChHHHHHHHHhhh
Q 038824 5 PCCDKLNVKKGLRRCGKSCRLRWTNYL 31 (187)
Q Consensus 5 ~~~~~~~~~~g~~Rt~~qCr~RW~~~L 31 (187)
+--|..++...+|||.+||+.||.+++
T Consensus 31 ~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 31 PDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp TTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456888888999999999999999864
No 76
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.38 E-value=0.084 Score=41.79 Aligned_cols=46 Identities=9% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHhhh--C------------CCCCHHHHHHHHHHHhh
Q 038824 38 ESFTPQEEEMIIRLHAAIG-SRWSIIAQQ--L------------PGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~--l------------pgRt~~q~k~rw~~~l~ 83 (187)
..||++||..||..+.+|| ++|..|..- | .-+++..+..|-..+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 4699999999999999999 899999862 1 12456678888776665
No 77
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.34 E-value=0.2 Score=43.76 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHHhhh------------CCCCCHHHHHHHHHHHhhhhh
Q 038824 36 KHESFTPQEEEMIIRLHAAIG----SRWSIIAQQ------------LPGRTDNDVKNYWNTKLRKKL 86 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G----~~W~~Ia~~------------lpgRt~~q~k~rw~~~l~~~~ 86 (187)
++..||++||..||-++..|| +.|..|-.. +..||+..|..|..++++-..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 456799999999999999999 359999543 456999999999999997543
No 78
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.20 E-value=0.21 Score=39.42 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CChHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 038824 36 KHESFTPQEEEMIIRLHAAIG---SRWSIIAQQ--LPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 36 ~k~~wT~eED~~Ll~~v~~~G---~~W~~Ia~~--lpgRt~~q~k~rw~~~l~~ 84 (187)
....||..|-..++..+..|| .+|..|+.. |.++|...|+..+...+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999 579999975 7899999999887776654
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.06 E-value=0.028 Score=50.65 Aligned_cols=43 Identities=14% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 038824 38 ESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNT 80 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~ 80 (187)
..||++|..+..+.+..||.+|..|+++||+||-.+|-.+|..
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp -------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 4799999999999999999999999999999999999887654
No 80
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.64 E-value=0.14 Score=42.89 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHhhh
Q 038824 38 ESFTPQEEEMIIRLHAAIG-SRWSIIAQQ 65 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~ 65 (187)
+.|+.+||..||..|.+|| +.|.+|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3599999999999999999 899999853
No 81
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=90.55 E-value=0.17 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.037 Sum_probs=22.0
Q ss_pred hhHhhhc-cCCCCChHHHHHHHHhhhC
Q 038824 7 CDKLNVK-KGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 7 ~~~~~~~-~g~~Rt~~qCr~RW~~~L~ 32 (187)
-||.... +.++||-.|||+||.++|+
T Consensus 32 iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 32 LWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4566666 7999999999999999985
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=86.77 E-value=0.32 Score=33.14 Aligned_cols=20 Identities=35% Similarity=0.825 Sum_probs=16.8
Q ss_pred ccCCCCChHHHHHHHHhhhC
Q 038824 13 KKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 13 ~~g~~Rt~~qCr~RW~~~L~ 32 (187)
.+|..|++.||+.+|.+...
T Consensus 45 ~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 45 EKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp HHHCCCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998543
No 83
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.48 E-value=6 Score=32.85 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 038824 37 HESFTPQEEEMIIRLHAAIG---SRWSIIAQQ--LPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G---~~W~~Ia~~--lpgRt~~q~k~rw~~~l~~ 84 (187)
+++||.-|=..|++.+..|| .+|..|+.. |+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 579999875 7999999999999877664
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=72.69 E-value=6.1 Score=24.49 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 40 FTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 40 wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
.+ +.+..++.++-..|-.+.+||..| |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 455566666667788999999998 77999999877665543
No 85
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=71.12 E-value=3.9 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
-.|..+|...|+ .|..||..|.--.+..++..|..+|-+
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 357777888874 699999997333388999999999876
No 86
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=70.94 E-value=7 Score=24.90 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH----hCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 43 QEEEMIIRLHAA----IGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 43 eED~~Ll~~v~~----~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+.+..++.+.-. .|..+.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 444555555554 577899999998 88999999877666544
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.92 E-value=9.5 Score=33.15 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHhh
Q 038824 38 ESFTPQEEEMIIRLHAAIG-SRWSIIAQQLP-GRTDNDVKNYWNTKLR 83 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G-~~W~~Ia~~lp-gRt~~q~k~rw~~~l~ 83 (187)
+.||.-+-..++.++..|| ..-..||..|. |.|..+|+.+......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 66999999997 9999999965544443
No 88
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=69.54 E-value=10 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPGRT----DNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpgRt----~~q~k~rw~~~l~~ 84 (187)
-.|...|...|+ .|..||..|.--. +.++|..|..+|-+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 467777778873 6999999983222 57899999988876
No 89
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=69.12 E-value=8.6 Score=27.56 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCCC--C--HHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPGR--T--DNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpgR--t--~~q~k~rw~~~l~~ 84 (187)
-.|..+|...|+ .|..||..|.-- + +.++|..|..+|-+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 467778888884 699999998222 2 56899999998876
No 90
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.94 E-value=7.7 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH----HhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 43 QEEEMIIRLHA----AIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 43 eED~~Ll~~v~----~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+.+..++.+.- ..|..+.+||..| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444555544 3477899999998 88999999988766554
No 91
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.71 E-value=3.6 Score=26.10 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=19.1
Q ss_pred hhHhhhccCCCCChHHHHHHHHhh
Q 038824 7 CDKLNVKKGLRRCGKSCRLRWTNY 30 (187)
Q Consensus 7 ~~~~~~~~g~~Rt~~qCr~RW~~~ 30 (187)
.|..+....++||..||+.+|-..
T Consensus 33 ~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 33 NFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 355566888999999999999654
No 92
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=64.97 E-value=12 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCC-C---CHHHHHHHHHHHhhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPG-R---TDNDVKNYWNTKLRKK 85 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpg-R---t~~q~k~rw~~~l~~~ 85 (187)
-.|..+|..+|+ .|.+||..|.- . .+.++|..|..+|.+-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457777778774 69999999822 2 2568999999998873
No 93
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.27 E-value=13 Score=26.91 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCCC--C--HHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPGR--T--DNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpgR--t--~~q~k~rw~~~l~~ 84 (187)
-+|...|...|+ .|..||..|.-- + +..+|..|..+|-+
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 457777888874 699999998221 2 46899999988876
No 94
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=64.22 E-value=5.8 Score=28.90 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQLPGRTDNDVKNYWNTKLRKK 85 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~lpgRt~~q~k~rw~~~l~~~ 85 (187)
-.|..+|...|+ .|..||..|.--.+..+|..|..+|-+-
T Consensus 51 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 51 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp THHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 356677777773 5999999973333999999999999874
No 95
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=63.25 E-value=14 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhC--CCC---CHHHHHHHHHHHhhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQL--PGR---TDNDVKNYWNTKLRKK 85 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~q~k~rw~~~l~~~ 85 (187)
-.|..+|...|+ .|..||..| +.. .+..+|..|..+|.+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457777888874 699999998 332 2579999999999873
No 96
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=60.47 E-value=13 Score=27.64 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhC--CCC---CHHHHHHHHHHHhhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQL--PGR---TDNDVKNYWNTKLRKK 85 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~q~k~rw~~~l~~~ 85 (187)
..|..+|...|+ .|..||..| +.. .+..+|..|..+|-+-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 467778888874 699999998 332 2579999999999873
No 97
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.32 E-value=14 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 43 QEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 43 eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
+.+..++.++-..|-.-.+||..| |-+...|+.+....++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455556666667788899999998 7889999988775544
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=58.81 E-value=14 Score=26.83 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhC--CCC---CHHHHHHHHHHHhhhhhhhCCCCCCCcchHHH
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQL--PGR---TDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQ 101 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~ 101 (187)
-.|..+|...|+ .|..||..| |.- ....+|.+|..+|-+--. +++++...+.+
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~ 110 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEK 110 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHH
Confidence 467777777774 699999998 432 257899999999887432 34444444433
No 99
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=57.21 E-value=5.4 Score=26.36 Aligned_cols=26 Identities=4% Similarity=-0.234 Sum_probs=19.6
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhC
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~ 32 (187)
--|..+.... |||.++|+.||...+.
T Consensus 32 ~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 32 GRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp THHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3456666664 8999999999987654
No 100
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=56.62 E-value=7.3 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=21.7
Q ss_pred hhhHhhhccCCCCChHHHHHHHHhhhC
Q 038824 6 CCDKLNVKKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 6 ~~~~~~~~~g~~Rt~~qCr~RW~~~L~ 32 (187)
=-|..+....+|||..+|+.||...++
T Consensus 32 ~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 32 GFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 346667777788999999999998654
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=54.00 E-value=9 Score=26.26 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHHhC--------CChHHHhhhC--CC--CCHHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIG--------SRWSIIAQQL--PG--RTDNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G--------~~W~~Ia~~l--pg--Rt~~q~k~rw~~~l~~ 84 (187)
-.|..+|...| ..|.+||..| +. -.+.++|..|..+|-+
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 35666777776 3699999987 22 1256889989887765
No 102
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=51.91 E-value=37 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
....|+.|-+.|.-+. .|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3468888877665543 888899999998 78999999988776654
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.31 E-value=33 Score=21.52 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 40 FTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 40 wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555554 454 6778899999999 77999999877665543
No 104
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=48.81 E-value=28 Score=22.85 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH----hCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 43 QEEEMIIRLHAA----IGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 43 eED~~Ll~~v~~----~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+.+..++.+.-. .|-.+.+||..| |-+...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555444 467899999998 88999999877665544
No 105
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.42 E-value=31 Score=23.13 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766666554 4 7788899999998 77999999887665543
No 106
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.08 E-value=31 Score=25.29 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=25.1
Q ss_pred HHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 51 LHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 51 ~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+....|-...+||..| |-+...|+.+....+++
T Consensus 151 l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 151 LRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4344577899999998 78999999988765543
No 107
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=44.58 E-value=20 Score=23.13 Aligned_cols=26 Identities=4% Similarity=-0.120 Sum_probs=21.7
Q ss_pred hhHhhh---ccCCCCChHHHHHHHHhhhC
Q 038824 7 CDKLNV---KKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 7 ~~~~~~---~~g~~Rt~~qCr~RW~~~L~ 32 (187)
.|+.|+ ....+||.....+||++..+
T Consensus 29 ~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 29 HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 577777 46779999999999999654
No 108
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.52 E-value=43 Score=21.70 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777666554 4 6788899999998 78999999877655543
No 109
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.41 E-value=13 Score=25.97 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhC--CCC---CHHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGS--------RWSIIAQQL--PGR---TDNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~q~k~rw~~~l~~ 84 (187)
..|..+|...|+ .|.+||..| +.. .+.+++..|..+|-+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 457777777773 699999997 221 246899999988876
No 110
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=43.29 E-value=20 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 46 EMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 46 ~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..++.+....|-...+||..| |-+...|+.+....+++
T Consensus 141 r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 141 RALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334444455677899999998 78889999988766543
No 111
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.79 E-value=27 Score=25.70 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 038824 43 QEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTE 88 (187)
Q Consensus 43 eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~ 88 (187)
+-|..|+.+....| -.+..||+.+ |=+...|+.|+..+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888877777 5799999998 889999999999888776654
No 112
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.70 E-value=49 Score=23.03 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 43 QEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 43 eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
+.+..++.++...|-...+||..| |-+...|+.+....++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556666667788999999999 7899999987765544
No 113
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=41.49 E-value=6.5 Score=27.49 Aligned_cols=35 Identities=3% Similarity=-0.090 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhhhCCCCCCCcchHHHHHHHhcCCCCCC
Q 038824 75 KNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLP 113 (187)
Q Consensus 75 k~rw~~~l~~~~~~~~~t~~~~~~~~~~~~~~g~~~~~~ 113 (187)
..+|..+|.+ .+||.+|+..|.++...|+..|..+
T Consensus 21 ~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI 55 (93)
T 3hm5_A 21 EQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVI 55 (93)
T ss_dssp HHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeee
Confidence 4578778765 8999999999999999999887643
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.40 E-value=54 Score=19.39 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 45 EEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 45 D~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 46688889999998 78999999987766553
No 115
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=40.27 E-value=52 Score=22.92 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHH
Q 038824 40 FTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN 76 (187)
Q Consensus 40 wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~ 76 (187)
=|..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 367778888888899999999999998 777766654
No 116
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.22 E-value=53 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 47 MIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 47 ~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
.++.++-..|-...+||..| |-+...|+.+....++
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 33334444567899999998 8899999887765544
No 117
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.58 E-value=72 Score=19.42 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 38 ESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 38 ~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..+|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766654 4 6678899999998 77999999877665543
No 118
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.06 E-value=49 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=23.2
Q ss_pred HHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 53 AAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 53 ~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
...|-...+||..| |-+...|+.+....++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34567899999998 7899999988875544
No 119
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=36.02 E-value=31 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCChHHHhhhCCCC
Q 038824 45 EEMIIRLHAAIGSRWSIIAQQLPGR 69 (187)
Q Consensus 45 D~~Ll~~v~~~G~~W~~Ia~~lpgR 69 (187)
+.+|-+||..|| |...+..+.-|
T Consensus 18 E~ilt~Lv~~YG--W~~L~~~i~I~ 40 (88)
T 2jvw_A 18 QKLLTELVEHYG--WEELSYMVNIN 40 (88)
T ss_dssp HHHHHHHHHHTC--HHHHHHHTTSS
T ss_pred HHHHHHHHHHhC--HHHHHhhcccc
Confidence 578999999998 99999987543
No 120
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.46 E-value=43 Score=22.00 Aligned_cols=43 Identities=28% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777666554 4 6788899999999 78999999887655543
No 121
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=35.29 E-value=19 Score=29.23 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=21.4
Q ss_pred hHhhhccCCCCChHHHHHHHHhhhC
Q 038824 8 DKLNVKKGLRRCGKSCRLRWTNYLR 32 (187)
Q Consensus 8 ~~~~~~~g~~Rt~~qCr~RW~~~L~ 32 (187)
|..+.+...+||..||+..|.++.+
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6677777889999999999998864
No 122
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.06 E-value=49 Score=23.49 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=26.7
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHH
Q 038824 31 LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN 76 (187)
Q Consensus 31 L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~ 76 (187)
+.+.+-...=|.+ .|..++...|..|..+|+.| |=++.+|..
T Consensus 13 ~~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 13 IPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp ---CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred CCchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344444445555 45555788999999999998 666665544
No 123
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.81 E-value=46 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.511 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCChHHHhhhCCCCCHHHHHH
Q 038824 45 EEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN 76 (187)
Q Consensus 45 D~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~ 76 (187)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3456667788999999999998 666665544
No 124
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.49 E-value=47 Score=23.58 Aligned_cols=42 Identities=19% Similarity=0.420 Sum_probs=27.7
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHH
Q 038824 31 LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN 76 (187)
Q Consensus 31 L~P~l~k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~ 76 (187)
+.+.+-...=|.++ |..++...|..|..+|+.| |=++.+|..
T Consensus 13 ~~~~~~~~~~t~~~---l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 13 IPSHILNSSPSDRQ---INQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp ---CCTTSCCCHHH---HHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CCchhhcCCCCHHH---HHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 45555555566664 5555788999999999998 666665544
No 125
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.18 E-value=95 Score=22.07 Aligned_cols=45 Identities=7% Similarity=0.128 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 038824 43 QEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTE 88 (187)
Q Consensus 43 eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~ 88 (187)
+-|..|+.+....| -.+.+||+.+ |=+...|..+...+....+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777766 6799999998 779999999998887765544
No 126
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=32.04 E-value=82 Score=21.95 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824 40 FTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83 (187)
Q Consensus 40 wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~ 83 (187)
+++.+ ..++.++...|-.-.+||..+ |-+...|+.+.....+
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 45444 555666667888999999998 8899999988775544
No 127
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.33 E-value=71 Score=23.79 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 038824 43 QEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTE 88 (187)
Q Consensus 43 eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~ 88 (187)
+-|..|+.+....| -.+.+||+.+ |-+...|+.|...+....+.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45667777777777 6799999998 779999999998887765544
No 128
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.98 E-value=1.3e+02 Score=20.35 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45688888877654 3 3788899999998 77999999877665554
No 129
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.44 E-value=96 Score=22.13 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 038824 43 QEEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTE 88 (187)
Q Consensus 43 eED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~ 88 (187)
+-|..|+.+....| -.+.+||+.+ |-+...|..|...+....+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34566777777766 6799999998 779999999998887776544
No 130
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=27.27 E-value=83 Score=21.80 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCChHHHhhhCCCCCHHHHHH
Q 038824 46 EMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN 76 (187)
Q Consensus 46 ~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~ 76 (187)
..|-.+....|..|..+|+.| |=++.+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 444456677899999999998 667766655
No 131
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.07 E-value=1.5e+02 Score=20.49 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 038824 44 EEEMIIRLHAAIG-SRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTE 88 (187)
Q Consensus 44 ED~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~ 88 (187)
-|..|+.+....| -.+.+||+.+ |-+...|..+...+....+..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 3556666666666 5799999999 889999999998887766554
No 132
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.81 E-value=86 Score=16.91 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHH
Q 038824 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNY 77 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~r 77 (187)
..++++-..++.++ .-|....+||+.| |-+...|..+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHH
Confidence 46777777777765 4577899999988 6677766654
No 133
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.24 E-value=1.2e+02 Score=18.46 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCChHHHhhhC
Q 038824 43 QEEEMIIRLHAAIGSRWSIIAQQL 66 (187)
Q Consensus 43 eED~~Ll~~v~~~G~~W~~Ia~~l 66 (187)
-|.+.|.++...+|++....|+.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 477788888899999999999987
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.28 E-value=1.5e+02 Score=19.46 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHH
Q 038824 42 PQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVK 75 (187)
Q Consensus 42 ~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k 75 (187)
.-|.+.|.++...+|++....|+.| |=+...+.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~ 82 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLT 82 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 3477788888899998999999887 54554443
No 135
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.49 E-value=1.1e+02 Score=23.87 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 39 ~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
..++.|-+.| .++ ..|-.-.+||..| |.+...|+.|-...+++
T Consensus 197 ~L~~~erevl-~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKEIL-RCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHHHH-HHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4566555544 455 5788999999999 88999999988766543
No 136
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.00 E-value=55 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHHhhhC-CCCCCCCCCHHHHHHHH
Q 038824 22 SCRLRWTNYLR-PDLKHESFTPQEEEMII 49 (187)
Q Consensus 22 qCr~RW~~~L~-P~l~k~~wT~eED~~Ll 49 (187)
+--+.|..-.. |.-..|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 44556666555 45678999999999886
No 137
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.50 E-value=1.8e+02 Score=19.78 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH----hCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 038824 44 EEEMIIRLHAA----IGSRWSIIAQQLPGRTDNDVKNYWNTKLRK 84 (187)
Q Consensus 44 ED~~Ll~~v~~----~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~ 84 (187)
.+..++.+.-- .|-...+||..| |-+...|+.+-...+++
T Consensus 23 reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 23 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445545332 246799999998 77888888877665543
Done!