Query 038826
Match_columns 572
No_of_seqs 427 out of 3393
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.2E-99 1E-103 884.0 49.9 555 1-561 1-568 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4E-56 8.6E-61 498.0 28.0 371 190-567 161-587 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.5E-43 9.9E-48 354.0 10.5 264 192-459 1-283 (287)
4 PLN03194 putative disease resi 100.0 3.2E-41 7E-46 302.7 15.0 156 6-178 20-178 (187)
5 PF01582 TIR: TIR domain; Int 99.8 1.2E-21 2.5E-26 175.8 4.6 132 15-146 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 1.1E-19 2.3E-24 163.0 11.2 136 12-149 1-138 (140)
7 PRK04841 transcriptional regul 99.6 7.9E-14 1.7E-18 162.9 25.7 291 182-496 9-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.6 7.4E-16 1.6E-20 130.0 3.9 87 15-107 1-87 (102)
9 PRK00411 cdc6 cell division co 99.3 7.5E-11 1.6E-15 124.6 21.2 283 182-475 25-358 (394)
10 TIGR00635 ruvB Holliday juncti 99.3 4.2E-11 9E-16 121.9 15.9 267 187-475 4-289 (305)
11 PF01637 Arch_ATPase: Archaeal 99.3 1.1E-11 2.4E-16 120.5 10.2 194 189-387 1-233 (234)
12 PRK00080 ruvB Holliday junctio 99.3 1.9E-11 4.2E-16 125.4 12.2 269 185-475 23-310 (328)
13 COG2909 MalT ATP-dependent tra 99.2 1.1E-09 2.3E-14 119.0 20.5 292 182-497 14-342 (894)
14 TIGR02928 orc1/cdc6 family rep 99.2 1.2E-09 2.6E-14 114.1 20.3 283 182-475 10-350 (365)
15 TIGR03015 pepcterm_ATPase puta 99.1 2.1E-09 4.5E-14 107.4 17.6 177 210-392 43-242 (269)
16 PF05729 NACHT: NACHT domain 99.1 6E-10 1.3E-14 102.3 11.5 139 211-356 1-162 (166)
17 COG3903 Predicted ATPase [Gene 99.1 7.4E-11 1.6E-15 118.8 5.5 279 209-495 13-316 (414)
18 COG3899 Predicted ATPase [Gene 99.1 1.2E-09 2.5E-14 124.6 15.0 301 188-493 1-386 (849)
19 KOG3678 SARM protein (with ste 98.8 3.1E-08 6.8E-13 99.9 11.2 145 9-183 609-762 (832)
20 COG2256 MGS1 ATPase related to 98.8 5E-08 1.1E-12 98.1 12.3 167 187-382 24-206 (436)
21 PRK13342 recombination factor 98.8 5.9E-08 1.3E-12 102.8 13.5 176 186-390 11-198 (413)
22 PRK06893 DNA replication initi 98.8 3E-08 6.6E-13 96.3 9.8 151 210-389 39-204 (229)
23 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.7E-07 3.6E-12 91.0 10.8 174 187-391 15-204 (226)
24 PF13173 AAA_14: AAA domain 98.6 1.5E-07 3.4E-12 82.6 8.4 118 211-348 3-126 (128)
25 PTZ00112 origin recognition co 98.6 8.5E-07 1.9E-11 97.6 13.9 204 182-392 750-986 (1164)
26 PRK07003 DNA polymerase III su 98.5 1.3E-06 2.9E-11 95.6 15.2 180 186-387 15-220 (830)
27 PF13401 AAA_22: AAA domain; P 98.5 5.1E-07 1.1E-11 79.4 9.7 111 210-326 4-125 (131)
28 PRK12402 replication factor C 98.5 1.4E-06 3.1E-11 89.9 13.3 192 187-386 15-224 (337)
29 cd00009 AAA The AAA+ (ATPases 98.5 4.9E-07 1.1E-11 80.5 8.6 123 190-328 1-131 (151)
30 TIGR01242 26Sp45 26S proteasom 98.5 3.8E-07 8.2E-12 95.1 8.7 173 186-382 121-328 (364)
31 PTZ00202 tuzin; Provisional 98.5 7.3E-07 1.6E-11 91.4 10.2 164 182-356 257-433 (550)
32 PRK14963 DNA polymerase III su 98.5 2.7E-06 5.9E-11 91.6 14.7 190 187-385 14-214 (504)
33 PRK14961 DNA polymerase III su 98.5 2.8E-06 6.1E-11 88.4 14.4 179 185-385 14-217 (363)
34 PF13191 AAA_16: AAA ATPase do 98.5 2E-07 4.3E-12 87.2 5.3 50 188-237 1-51 (185)
35 PRK07471 DNA polymerase III su 98.4 5.7E-06 1.2E-10 85.6 16.3 198 183-388 15-238 (365)
36 PRK14949 DNA polymerase III su 98.4 2.2E-06 4.7E-11 95.7 13.4 178 186-386 15-218 (944)
37 PRK12323 DNA polymerase III su 98.4 1.9E-06 4.1E-11 93.2 11.8 193 186-386 15-223 (700)
38 PRK08903 DnaA regulatory inact 98.4 1.6E-06 3.5E-11 84.2 10.3 173 186-392 17-203 (227)
39 PRK14957 DNA polymerase III su 98.4 3.5E-06 7.6E-11 91.0 12.9 181 185-388 14-221 (546)
40 PRK05564 DNA polymerase III su 98.4 4.6E-06 1E-10 85.1 13.2 175 187-386 4-188 (313)
41 PRK04195 replication factor C 98.4 2.2E-06 4.7E-11 92.7 11.3 177 186-386 13-200 (482)
42 PRK14960 DNA polymerase III su 98.4 3.1E-06 6.7E-11 91.8 12.2 179 185-385 13-216 (702)
43 PLN03025 replication factor C 98.4 2.3E-06 5.1E-11 87.5 10.9 178 187-384 13-196 (319)
44 PF05496 RuvB_N: Holliday junc 98.4 2.1E-06 4.5E-11 81.0 9.5 180 184-393 21-226 (233)
45 PRK13341 recombination factor 98.3 2E-06 4.2E-11 96.3 10.8 167 187-382 28-211 (725)
46 PRK08727 hypothetical protein; 98.3 3.2E-06 7E-11 82.3 10.9 146 211-385 42-201 (233)
47 PRK00440 rfc replication facto 98.3 9.8E-06 2.1E-10 82.9 14.7 180 187-385 17-200 (319)
48 COG1474 CDC6 Cdc6-related prot 98.3 9.3E-06 2E-10 83.9 13.6 279 183-475 13-334 (366)
49 PRK09087 hypothetical protein; 98.3 6.3E-06 1.4E-10 79.7 11.6 139 210-388 44-195 (226)
50 TIGR02397 dnaX_nterm DNA polym 98.3 1E-05 2.3E-10 84.1 14.1 183 185-389 12-219 (355)
51 TIGR00678 holB DNA polymerase 98.3 1.6E-05 3.4E-10 74.9 14.0 149 210-384 14-187 (188)
52 PRK07940 DNA polymerase III su 98.3 8.6E-06 1.9E-10 85.0 12.9 170 188-387 6-212 (394)
53 PRK06645 DNA polymerase III su 98.3 7E-06 1.5E-10 88.2 12.3 184 186-384 20-225 (507)
54 KOG2028 ATPase related to the 98.3 6.1E-06 1.3E-10 81.8 10.7 145 187-355 138-292 (554)
55 PRK14962 DNA polymerase III su 98.3 7E-06 1.5E-10 87.7 12.1 198 186-405 13-240 (472)
56 PF00308 Bac_DnaA: Bacterial d 98.2 9.4E-06 2E-10 78.2 11.5 157 210-386 34-206 (219)
57 PRK09112 DNA polymerase III su 98.2 1.5E-06 3.3E-11 89.4 6.2 196 182-389 18-241 (351)
58 PRK14951 DNA polymerase III su 98.2 1.2E-05 2.6E-10 88.1 13.5 187 185-385 14-222 (618)
59 PRK07994 DNA polymerase III su 98.2 6.5E-06 1.4E-10 90.4 11.1 187 185-385 14-217 (647)
60 PRK14956 DNA polymerase III su 98.2 9.6E-06 2.1E-10 85.6 12.0 185 185-384 16-218 (484)
61 PRK14087 dnaA chromosomal repl 98.2 9.3E-06 2E-10 86.6 11.8 165 210-390 141-321 (450)
62 PRK08691 DNA polymerase III su 98.2 6.4E-06 1.4E-10 90.2 10.7 178 186-386 15-218 (709)
63 PRK14958 DNA polymerase III su 98.2 9.1E-06 2E-10 87.8 11.8 178 186-385 15-217 (509)
64 PRK05642 DNA replication initi 98.2 1.6E-05 3.5E-10 77.5 12.3 150 211-389 46-209 (234)
65 PRK08084 DNA replication initi 98.2 1.4E-05 3E-10 78.0 11.8 149 210-388 45-209 (235)
66 PRK03992 proteasome-activating 98.2 1.1E-05 2.3E-10 84.7 11.8 172 186-382 130-337 (389)
67 PF14516 AAA_35: AAA-like doma 98.2 0.0003 6.4E-09 72.3 21.7 273 182-483 6-322 (331)
68 PRK14964 DNA polymerase III su 98.2 1.7E-05 3.8E-10 84.5 12.7 177 185-383 11-212 (491)
69 cd01128 rho_factor Transcripti 98.1 2.9E-06 6.3E-11 82.9 5.9 87 210-300 16-114 (249)
70 PRK14969 DNA polymerase III su 98.1 1.8E-05 3.9E-10 86.0 12.5 181 186-388 15-221 (527)
71 PRK09376 rho transcription ter 98.1 4E-06 8.6E-11 85.7 6.2 98 198-300 158-267 (416)
72 PRK05896 DNA polymerase III su 98.1 1.8E-05 3.9E-10 85.8 11.4 194 185-390 14-223 (605)
73 PRK07764 DNA polymerase III su 98.1 5.7E-05 1.2E-09 85.8 15.6 186 186-384 14-217 (824)
74 TIGR02903 spore_lon_C ATP-depe 98.1 2.9E-05 6.4E-10 86.0 13.0 201 185-391 152-398 (615)
75 PRK09111 DNA polymerase III su 98.1 3.3E-05 7.1E-10 84.8 12.6 191 185-386 22-231 (598)
76 TIGR02881 spore_V_K stage V sp 98.0 2.3E-05 4.9E-10 77.8 9.8 128 210-358 42-192 (261)
77 PF08937 DUF1863: MTH538 TIR-l 98.0 8.6E-06 1.9E-10 71.6 5.8 88 13-105 1-106 (130)
78 PRK00149 dnaA chromosomal repl 98.0 5.8E-05 1.3E-09 81.0 13.4 178 210-407 148-349 (450)
79 PRK14955 DNA polymerase III su 98.0 2.7E-05 5.9E-10 82.1 10.3 195 185-385 14-225 (397)
80 PRK14088 dnaA chromosomal repl 98.0 7E-05 1.5E-09 79.8 13.3 157 210-385 130-302 (440)
81 PRK14952 DNA polymerase III su 98.0 5.4E-05 1.2E-09 82.7 12.6 191 186-388 12-220 (584)
82 TIGR00362 DnaA chromosomal rep 98.0 7.6E-05 1.6E-09 79.1 13.4 157 210-386 136-308 (405)
83 PRK14970 DNA polymerase III su 98.0 7.5E-05 1.6E-09 78.1 13.1 177 185-383 15-204 (367)
84 PHA02544 44 clamp loader, smal 98.0 4.4E-05 9.6E-10 78.1 11.1 148 185-355 19-171 (316)
85 PRK14959 DNA polymerase III su 98.0 4.8E-05 1E-09 83.0 11.8 192 186-392 15-225 (624)
86 TIGR03689 pup_AAA proteasome A 97.9 3.1E-05 6.7E-10 82.9 8.8 159 187-357 182-378 (512)
87 PRK12422 chromosomal replicati 97.9 0.00018 3.9E-09 76.6 14.3 152 210-381 141-306 (445)
88 PRK14950 DNA polymerase III su 97.9 0.00013 2.8E-09 80.8 13.7 191 186-387 15-220 (585)
89 PRK14953 DNA polymerase III su 97.9 0.00017 3.7E-09 77.6 14.1 174 186-386 15-218 (486)
90 TIGR02639 ClpA ATP-dependent C 97.9 3.6E-05 7.7E-10 87.5 9.4 170 164-357 163-358 (731)
91 TIGR00767 rho transcription te 97.9 2.8E-05 6E-10 80.0 7.4 88 210-301 168-267 (415)
92 TIGR03345 VI_ClpV1 type VI sec 97.9 0.0001 2.2E-09 84.6 12.8 195 165-382 169-390 (852)
93 PRK06305 DNA polymerase III su 97.9 0.00018 3.9E-09 76.8 13.6 181 185-388 15-223 (451)
94 PRK06620 hypothetical protein; 97.9 8.5E-05 1.8E-09 71.2 10.0 133 211-385 45-186 (214)
95 PRK08451 DNA polymerase III su 97.9 0.00019 4.1E-09 77.4 13.6 179 186-386 13-216 (535)
96 PRK07133 DNA polymerase III su 97.9 0.00019 4E-09 79.7 13.6 185 186-388 17-220 (725)
97 PTZ00454 26S protease regulato 97.9 0.00012 2.5E-09 76.8 11.5 176 186-384 144-353 (398)
98 PRK05707 DNA polymerase III su 97.8 0.00036 7.8E-09 71.3 14.8 94 289-388 106-203 (328)
99 PRK08116 hypothetical protein; 97.8 5.4E-05 1.2E-09 75.2 8.1 101 211-326 115-220 (268)
100 PRK14954 DNA polymerase III su 97.8 0.00015 3.2E-09 79.9 12.0 192 185-383 14-223 (620)
101 PF00004 AAA: ATPase family as 97.8 0.00015 3.3E-09 63.4 9.5 23 213-235 1-23 (132)
102 PTZ00361 26 proteosome regulat 97.8 3.5E-05 7.6E-10 81.3 6.2 172 187-382 183-389 (438)
103 smart00382 AAA ATPases associa 97.7 0.00013 2.8E-09 64.1 8.4 35 211-245 3-37 (148)
104 PRK14948 DNA polymerase III su 97.7 0.00038 8.2E-09 77.1 13.8 190 186-386 15-220 (620)
105 PRK14086 dnaA chromosomal repl 97.7 0.00026 5.7E-09 77.0 12.3 156 210-385 314-485 (617)
106 COG1222 RPT1 ATP-dependent 26S 97.7 0.00025 5.4E-09 70.8 11.0 159 209-392 184-371 (406)
107 COG2255 RuvB Holliday junction 97.7 0.00023 4.9E-09 68.9 10.4 261 184-479 23-316 (332)
108 CHL00095 clpC Clp protease ATP 97.7 0.00014 3.1E-09 83.6 10.4 149 187-355 179-352 (821)
109 PRK06647 DNA polymerase III su 97.7 0.00064 1.4E-08 74.4 14.7 188 185-385 14-217 (563)
110 CHL00176 ftsH cell division pr 97.7 0.00026 5.5E-09 78.5 11.2 172 187-381 183-387 (638)
111 PRK10865 protein disaggregatio 97.7 0.00017 3.8E-09 83.0 10.1 66 165-236 160-225 (857)
112 TIGR02880 cbbX_cfxQ probable R 97.7 0.00049 1.1E-08 69.1 12.1 127 212-357 60-208 (284)
113 PRK05563 DNA polymerase III su 97.7 0.00054 1.2E-08 75.2 13.4 188 185-384 14-216 (559)
114 COG1373 Predicted ATPase (AAA+ 97.7 0.00042 9.1E-09 72.9 12.1 221 212-474 39-269 (398)
115 TIGR01241 FtsH_fam ATP-depende 97.6 0.00034 7.4E-09 76.1 11.7 173 187-382 55-260 (495)
116 PRK14971 DNA polymerase III su 97.6 0.00047 1E-08 76.3 12.6 176 186-384 16-218 (614)
117 KOG2543 Origin recognition com 97.6 0.00012 2.6E-09 73.5 7.0 161 186-356 5-192 (438)
118 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00032 7E-09 81.1 11.2 153 187-357 173-349 (852)
119 PRK07399 DNA polymerase III su 97.6 0.00055 1.2E-08 69.5 11.6 191 187-388 4-221 (314)
120 PRK14965 DNA polymerase III su 97.6 0.00032 6.8E-09 77.4 10.6 188 185-388 14-221 (576)
121 COG0593 DnaA ATPase involved i 97.6 0.0003 6.5E-09 72.9 9.2 131 210-359 113-259 (408)
122 PRK08181 transposase; Validate 97.6 0.00019 4.1E-09 71.0 7.5 35 211-245 107-141 (269)
123 PF08357 SEFIR: SEFIR domain; 97.6 9.2E-05 2E-09 66.9 4.8 64 14-77 2-70 (150)
124 CHL00181 cbbX CbbX; Provisiona 97.5 0.0013 2.9E-08 66.0 13.4 130 211-358 60-210 (287)
125 PRK11034 clpA ATP-dependent Cl 97.5 0.00014 3E-09 82.0 6.9 150 187-356 186-361 (758)
126 COG3267 ExeA Type II secretory 97.5 0.0022 4.7E-08 61.5 13.2 177 209-390 50-247 (269)
127 PRK09183 transposase/IS protei 97.5 0.00029 6.2E-09 69.7 7.5 35 211-245 103-137 (259)
128 PF05621 TniB: Bacterial TniB 97.5 0.0013 2.9E-08 65.1 11.8 187 196-386 46-259 (302)
129 TIGR01243 CDC48 AAA family ATP 97.4 0.00045 9.8E-09 78.8 9.5 173 187-382 178-381 (733)
130 PRK06526 transposase; Provisio 97.4 0.00015 3.3E-09 71.3 4.3 36 210-245 98-133 (254)
131 TIGR01243 CDC48 AAA family ATP 97.4 0.00097 2.1E-08 76.1 11.5 172 187-382 453-657 (733)
132 PF01695 IstB_IS21: IstB-like 97.3 0.00019 4.2E-09 66.7 4.1 35 211-245 48-82 (178)
133 PRK07952 DNA replication prote 97.3 0.0016 3.4E-08 63.6 10.5 75 210-300 99-173 (244)
134 PRK08769 DNA polymerase III su 97.3 0.0047 1E-07 62.7 14.2 93 288-388 112-208 (319)
135 PRK10536 hypothetical protein; 97.3 0.00048 1E-08 66.9 6.8 132 188-326 56-212 (262)
136 PRK08118 topology modulation p 97.3 0.00057 1.2E-08 62.9 7.0 34 212-245 3-39 (167)
137 PF05673 DUF815: Protein of un 97.3 0.0045 9.7E-08 59.5 13.0 55 183-237 23-79 (249)
138 PRK06921 hypothetical protein; 97.3 0.00035 7.6E-09 69.3 5.7 36 210-245 117-153 (266)
139 TIGR02640 gas_vesic_GvpN gas v 97.3 0.003 6.4E-08 62.7 12.4 25 211-235 22-46 (262)
140 PRK12377 putative replication 97.3 0.00074 1.6E-08 66.0 7.9 36 210-245 101-136 (248)
141 PRK11331 5-methylcytosine-spec 97.3 0.0002 4.4E-09 74.9 4.1 103 187-301 175-284 (459)
142 PF04665 Pox_A32: Poxvirus A32 97.3 0.00041 8.9E-09 67.0 5.9 34 212-245 15-48 (241)
143 KOG0744 AAA+-type ATPase [Post 97.3 0.0016 3.5E-08 64.1 9.8 78 210-299 177-260 (423)
144 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0012 2.6E-08 70.9 9.9 175 187-382 228-429 (489)
145 COG1484 DnaC DNA replication p 97.3 0.00075 1.6E-08 66.4 7.6 73 210-299 105-177 (254)
146 TIGR02639 ClpA ATP-dependent C 97.3 0.0016 3.4E-08 74.3 11.3 49 187-235 454-509 (731)
147 KOG0989 Replication factor C, 97.3 0.00058 1.2E-08 66.9 6.6 177 185-381 34-223 (346)
148 TIGR00602 rad24 checkpoint pro 97.3 0.00085 1.8E-08 74.0 8.7 51 185-235 82-135 (637)
149 PRK08058 DNA polymerase III su 97.3 0.0028 6E-08 65.1 11.9 144 189-356 7-181 (329)
150 KOG2227 Pre-initiation complex 97.2 0.0031 6.7E-08 65.3 11.8 170 184-357 147-338 (529)
151 PHA00729 NTP-binding motif con 97.2 0.0019 4.1E-08 61.8 9.5 26 210-235 17-42 (226)
152 KOG0741 AAA+-type ATPase [Post 97.2 0.0056 1.2E-07 64.1 13.4 147 209-378 537-704 (744)
153 PRK10865 protein disaggregatio 97.2 0.0024 5.1E-08 73.8 11.8 116 187-311 568-694 (857)
154 TIGR03346 chaperone_ClpB ATP-d 97.2 0.00082 1.8E-08 77.8 7.7 116 187-311 565-691 (852)
155 PRK06871 DNA polymerase III su 97.2 0.012 2.5E-07 60.0 15.1 90 288-384 106-199 (325)
156 TIGR02237 recomb_radB DNA repa 97.2 0.0013 2.9E-08 62.8 7.9 43 203-245 5-47 (209)
157 PRK09361 radB DNA repair and r 97.1 0.0011 2.3E-08 64.3 7.2 47 199-245 12-58 (225)
158 PRK07261 topology modulation p 97.1 0.0021 4.5E-08 59.4 8.3 23 212-234 2-24 (171)
159 PRK08939 primosomal protein Dn 97.1 0.0014 3.1E-08 66.3 7.8 98 210-325 156-259 (306)
160 PRK06835 DNA replication prote 97.1 0.00074 1.6E-08 68.9 5.8 35 211-245 184-218 (329)
161 CHL00095 clpC Clp protease ATP 97.1 0.0014 2.9E-08 75.7 8.1 131 187-326 509-661 (821)
162 PF13207 AAA_17: AAA domain; P 97.0 0.00045 9.9E-09 59.6 3.0 23 212-234 1-23 (121)
163 cd01131 PilT Pilus retraction 97.0 0.0014 3.1E-08 62.1 6.5 111 211-331 2-113 (198)
164 PRK06090 DNA polymerase III su 97.0 0.015 3.4E-07 58.9 14.2 91 288-388 107-201 (319)
165 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0016 3.4E-08 64.2 6.8 90 210-301 69-175 (274)
166 cd01120 RecA-like_NTPases RecA 97.0 0.0027 6E-08 57.4 8.1 34 212-245 1-34 (165)
167 PRK07993 DNA polymerase III su 97.0 0.014 3E-07 60.0 13.9 91 288-385 107-201 (334)
168 TIGR03345 VI_ClpV1 type VI sec 97.0 0.00087 1.9E-08 77.1 5.8 50 187-236 566-622 (852)
169 COG0470 HolB ATPase involved i 97.0 0.0023 5.1E-08 65.4 8.4 137 189-343 3-167 (325)
170 PF13177 DNA_pol3_delta2: DNA 97.0 0.0038 8.1E-08 57.1 8.8 120 210-345 19-162 (162)
171 PF10443 RNA12: RNA12 protein; 97.0 0.12 2.7E-06 53.7 20.5 101 290-394 149-284 (431)
172 PRK13531 regulatory ATPase Rav 97.0 0.0018 3.9E-08 68.6 7.2 45 187-235 20-64 (498)
173 PRK12608 transcription termina 96.9 0.0026 5.6E-08 65.3 8.0 99 198-300 122-231 (380)
174 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0023 4.9E-08 68.1 7.7 151 187-357 190-374 (802)
175 COG0488 Uup ATPase components 96.9 0.054 1.2E-06 58.9 18.4 131 210-343 348-511 (530)
176 PRK06964 DNA polymerase III su 96.9 0.029 6.3E-07 57.5 15.3 89 288-386 131-223 (342)
177 PRK10787 DNA-binding ATP-depen 96.9 0.011 2.4E-07 67.5 13.2 159 187-357 322-506 (784)
178 cd01393 recA_like RecA is a b 96.9 0.0035 7.6E-08 60.6 7.9 45 201-245 10-60 (226)
179 COG0466 Lon ATP-dependent Lon 96.8 0.0016 3.5E-08 70.7 5.8 156 187-357 323-508 (782)
180 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0044 9.6E-08 56.0 7.6 116 211-328 3-139 (159)
181 PLN00020 ribulose bisphosphate 96.8 0.0018 3.8E-08 65.9 5.4 30 209-238 147-176 (413)
182 cd01394 radB RadB. The archaea 96.8 0.0032 7E-08 60.6 7.1 47 199-245 8-54 (218)
183 COG1618 Predicted nucleotide k 96.8 0.0012 2.5E-08 58.8 3.5 37 211-247 6-44 (179)
184 COG0542 clpA ATP-binding subun 96.8 0.0057 1.2E-07 68.2 9.5 118 187-313 491-619 (786)
185 PRK10733 hflB ATP-dependent me 96.7 0.012 2.6E-07 66.0 12.0 128 211-358 186-336 (644)
186 PRK04296 thymidine kinase; Pro 96.7 0.0019 4.2E-08 60.7 4.9 109 211-328 3-117 (190)
187 cd00544 CobU Adenosylcobinamid 96.7 0.0026 5.6E-08 58.5 5.4 78 213-298 2-82 (169)
188 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.008 1.7E-07 53.8 8.5 104 210-332 26-132 (144)
189 PRK05800 cobU adenosylcobinami 96.7 0.0015 3.4E-08 60.1 3.9 78 212-298 3-85 (170)
190 PF13671 AAA_33: AAA domain; P 96.7 0.006 1.3E-07 54.2 7.6 24 212-235 1-24 (143)
191 KOG0730 AAA+-type ATPase [Post 96.7 0.011 2.5E-07 63.7 10.7 131 208-359 466-617 (693)
192 KOG0735 AAA+-type ATPase [Post 96.7 0.023 4.9E-07 61.8 12.8 158 210-388 431-616 (952)
193 TIGR00763 lon ATP-dependent pr 96.6 0.0022 4.8E-08 73.5 5.5 52 187-238 320-375 (775)
194 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0073 1.6E-07 58.8 8.5 46 200-245 9-60 (235)
195 PRK00771 signal recognition pa 96.6 0.024 5.2E-07 60.1 12.8 29 209-237 94-122 (437)
196 PF00158 Sigma54_activat: Sigm 96.6 0.0023 5E-08 58.8 4.5 45 189-233 1-45 (168)
197 PF02562 PhoH: PhoH-like prote 96.6 0.0049 1.1E-07 58.2 6.7 112 210-326 19-155 (205)
198 PRK11034 clpA ATP-dependent Cl 96.6 0.0045 9.7E-08 70.1 7.5 49 187-235 458-513 (758)
199 KOG0728 26S proteasome regulat 96.6 0.016 3.4E-07 55.3 9.8 125 209-357 180-331 (404)
200 cd03214 ABC_Iron-Siderophores_ 96.6 0.013 2.8E-07 54.6 9.4 128 210-341 25-171 (180)
201 KOG0991 Replication factor C, 96.6 0.0054 1.2E-07 57.8 6.7 97 187-302 27-126 (333)
202 smart00763 AAA_PrkA PrkA AAA d 96.6 0.00093 2E-08 68.1 1.5 49 188-236 52-104 (361)
203 PF00448 SRP54: SRP54-type pro 96.5 0.0051 1.1E-07 58.1 6.2 57 210-269 1-57 (196)
204 KOG0733 Nuclear AAA ATPase (VC 96.5 0.02 4.4E-07 61.2 10.8 128 210-358 545-693 (802)
205 PRK08699 DNA polymerase III su 96.5 0.02 4.3E-07 58.6 10.7 87 289-385 113-203 (325)
206 cd01121 Sms Sms (bacterial rad 96.5 0.0092 2E-07 62.0 8.4 95 198-299 70-168 (372)
207 PRK05541 adenylylsulfate kinas 96.5 0.0028 6.1E-08 58.8 4.0 37 209-245 6-42 (176)
208 cd00983 recA RecA is a bacter 96.5 0.0058 1.3E-07 61.9 6.5 92 199-299 43-143 (325)
209 COG1223 Predicted ATPase (AAA+ 96.4 0.018 3.8E-07 55.4 9.0 171 187-381 121-318 (368)
210 PRK09354 recA recombinase A; P 96.4 0.0061 1.3E-07 62.3 6.3 92 199-299 48-148 (349)
211 COG0464 SpoVK ATPases of the A 96.4 0.018 3.9E-07 62.7 10.6 130 209-358 275-424 (494)
212 COG2812 DnaX DNA polymerase II 96.4 0.011 2.4E-07 63.3 8.4 183 187-381 16-213 (515)
213 PRK06217 hypothetical protein; 96.4 0.017 3.6E-07 54.0 8.8 24 212-235 3-26 (183)
214 KOG1969 DNA replication checkp 96.4 0.0099 2.1E-07 64.8 7.9 73 209-301 325-399 (877)
215 PRK06067 flagellar accessory p 96.4 0.0069 1.5E-07 59.0 6.4 47 199-245 14-60 (234)
216 PRK07667 uridine kinase; Provi 96.4 0.0026 5.7E-08 60.0 3.3 38 199-236 6-43 (193)
217 PF14532 Sigma54_activ_2: Sigm 96.4 0.00086 1.9E-08 59.6 -0.1 45 190-234 1-45 (138)
218 TIGR02012 tigrfam_recA protein 96.3 0.0065 1.4E-07 61.5 6.1 90 201-299 45-143 (321)
219 PRK06696 uridine kinase; Valid 96.3 0.0021 4.5E-08 62.2 2.4 28 209-236 21-48 (223)
220 PF13238 AAA_18: AAA domain; P 96.3 0.0027 5.8E-08 55.2 2.9 22 213-234 1-22 (129)
221 KOG2228 Origin recognition com 96.3 0.02 4.4E-07 57.1 9.1 171 186-357 23-219 (408)
222 KOG0731 AAA+-type ATPase conta 96.3 0.016 3.6E-07 64.2 9.4 177 186-385 310-521 (774)
223 cd03216 ABC_Carb_Monos_I This 96.3 0.0088 1.9E-07 54.7 6.2 124 210-341 26-155 (163)
224 cd03247 ABCC_cytochrome_bd The 96.3 0.016 3.5E-07 53.8 8.1 122 210-341 28-169 (178)
225 PRK04132 replication factor C 96.2 0.089 1.9E-06 60.0 14.9 149 218-385 574-728 (846)
226 COG4088 Predicted nucleotide k 96.2 0.0077 1.7E-07 55.8 5.3 27 211-237 2-28 (261)
227 PF01583 APS_kinase: Adenylyls 96.2 0.0048 1E-07 55.6 3.9 35 211-245 3-37 (156)
228 COG2607 Predicted ATPase (AAA+ 96.2 0.021 4.5E-07 54.4 8.1 58 185-242 58-117 (287)
229 PF07726 AAA_3: ATPase family 96.2 0.0039 8.5E-08 53.8 3.1 31 213-243 2-32 (131)
230 PF00485 PRK: Phosphoribulokin 96.2 0.0037 8.1E-08 59.0 3.2 25 212-236 1-25 (194)
231 PF08423 Rad51: Rad51; InterP 96.2 0.0097 2.1E-07 58.7 6.1 64 198-266 26-95 (256)
232 TIGR01817 nifA Nif-specific re 96.1 0.024 5.3E-07 62.4 9.8 51 184-234 193-243 (534)
233 cd03223 ABCD_peroxisomal_ALDP 96.1 0.032 7E-07 51.1 8.9 124 210-341 27-160 (166)
234 TIGR01420 pilT_fam pilus retra 96.1 0.017 3.6E-07 59.8 7.5 110 210-329 122-232 (343)
235 TIGR02858 spore_III_AA stage I 96.1 0.032 6.8E-07 55.4 9.2 115 210-330 111-232 (270)
236 COG0542 clpA ATP-binding subun 96.1 0.0062 1.3E-07 67.9 4.5 151 187-356 170-345 (786)
237 PRK11823 DNA repair protein Ra 96.1 0.021 4.6E-07 61.0 8.5 96 197-299 67-166 (446)
238 cd03228 ABCC_MRP_Like The MRP 96.0 0.044 9.6E-07 50.5 9.6 122 210-341 28-167 (171)
239 PRK10867 signal recognition pa 96.0 0.057 1.2E-06 57.2 11.5 29 209-237 99-127 (433)
240 PRK03839 putative kinase; Prov 96.0 0.0048 1E-07 57.4 3.0 24 212-235 2-25 (180)
241 PRK08233 hypothetical protein; 96.0 0.0052 1.1E-07 57.1 3.2 26 210-235 3-28 (182)
242 TIGR00708 cobA cob(I)alamin ad 96.0 0.03 6.4E-07 51.3 8.0 110 211-327 6-140 (173)
243 PF08433 KTI12: Chromatin asso 96.0 0.0031 6.6E-08 62.6 1.6 35 211-245 2-36 (270)
244 PRK11889 flhF flagellar biosyn 96.0 0.041 8.9E-07 56.9 9.7 37 209-245 240-276 (436)
245 cd03222 ABC_RNaseL_inhibitor T 96.0 0.026 5.6E-07 52.3 7.6 115 210-342 25-146 (177)
246 COG1066 Sms Predicted ATP-depe 96.0 0.029 6.3E-07 57.6 8.4 95 197-299 80-178 (456)
247 PRK06762 hypothetical protein; 95.9 0.0055 1.2E-07 56.2 3.0 24 211-234 3-26 (166)
248 TIGR00959 ffh signal recogniti 95.9 0.1 2.3E-06 55.2 12.8 27 209-235 98-124 (428)
249 PRK00625 shikimate kinase; Pro 95.9 0.0056 1.2E-07 56.5 2.9 24 212-235 2-25 (173)
250 PRK04040 adenylate kinase; Pro 95.9 0.0076 1.7E-07 56.5 3.8 25 211-235 3-27 (188)
251 PRK05480 uridine/cytidine kina 95.9 0.0066 1.4E-07 58.0 3.5 26 209-234 5-30 (209)
252 PRK11608 pspF phage shock prot 95.9 0.012 2.6E-07 60.3 5.6 47 187-233 6-52 (326)
253 KOG0734 AAA+-type ATPase conta 95.9 0.014 3E-07 61.5 5.8 47 187-233 304-360 (752)
254 PRK00131 aroK shikimate kinase 95.9 0.0068 1.5E-07 55.8 3.3 26 210-235 4-29 (175)
255 PTZ00301 uridine kinase; Provi 95.8 0.006 1.3E-07 58.2 2.9 28 210-237 3-30 (210)
256 PLN03187 meiotic recombination 95.8 0.029 6.3E-07 57.5 8.0 64 199-267 115-184 (344)
257 cd03238 ABC_UvrA The excision 95.8 0.043 9.4E-07 50.8 8.5 116 210-341 21-161 (176)
258 TIGR00416 sms DNA repair prote 95.8 0.024 5.2E-07 60.7 7.6 97 196-299 80-180 (454)
259 cd02019 NK Nucleoside/nucleoti 95.8 0.01 2.2E-07 45.7 3.5 23 212-234 1-23 (69)
260 TIGR03574 selen_PSTK L-seryl-t 95.8 0.013 2.8E-07 57.6 5.2 25 212-236 1-25 (249)
261 COG0572 Udk Uridine kinase [Nu 95.8 0.0098 2.1E-07 56.3 4.0 29 209-237 7-35 (218)
262 PF13604 AAA_30: AAA domain; P 95.8 0.017 3.8E-07 54.5 5.7 101 210-325 18-129 (196)
263 cd03246 ABCC_Protease_Secretio 95.8 0.038 8.3E-07 51.0 7.9 123 210-341 28-168 (173)
264 PRK15429 formate hydrogenlyase 95.8 0.018 3.9E-07 65.4 6.8 49 186-234 375-423 (686)
265 PRK15455 PrkA family serine pr 95.7 0.004 8.6E-08 66.9 1.4 50 187-236 76-129 (644)
266 PRK00889 adenylylsulfate kinas 95.7 0.011 2.3E-07 54.8 4.1 36 210-245 4-39 (175)
267 COG4608 AppF ABC-type oligopep 95.7 0.033 7.1E-07 54.3 7.4 123 209-333 38-176 (268)
268 COG0468 RecA RecA/RadA recombi 95.7 0.032 6.9E-07 55.3 7.4 93 202-299 52-151 (279)
269 PRK05973 replicative DNA helic 95.7 0.017 3.6E-07 56.0 5.3 36 210-245 64-99 (237)
270 PRK13947 shikimate kinase; Pro 95.7 0.0079 1.7E-07 55.4 2.9 26 212-237 3-28 (171)
271 TIGR00235 udk uridine kinase. 95.6 0.0096 2.1E-07 56.8 3.3 27 209-235 5-31 (207)
272 KOG1514 Origin recognition com 95.6 0.14 3.1E-06 55.9 12.2 134 185-324 394-546 (767)
273 TIGR01425 SRP54_euk signal rec 95.6 0.033 7.1E-07 58.6 7.4 28 209-236 99-126 (429)
274 TIGR01360 aden_kin_iso1 adenyl 95.6 0.0093 2E-07 55.7 3.0 26 209-234 2-27 (188)
275 cd01125 repA Hexameric Replica 95.6 0.099 2.2E-06 51.0 10.4 23 212-234 3-25 (239)
276 PRK05986 cob(I)alamin adenolsy 95.6 0.049 1.1E-06 50.7 7.7 117 210-327 22-158 (191)
277 COG0563 Adk Adenylate kinase a 95.5 0.02 4.2E-07 53.2 5.0 23 212-234 2-24 (178)
278 cd03232 ABC_PDR_domain2 The pl 95.5 0.062 1.3E-06 50.6 8.5 24 210-233 33-56 (192)
279 PRK06547 hypothetical protein; 95.5 0.011 2.4E-07 54.5 3.3 26 209-234 14-39 (172)
280 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.018 4E-07 52.2 4.7 122 211-341 26-153 (157)
281 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.07 1.5E-06 52.3 9.1 25 210-234 25-49 (246)
282 PF07728 AAA_5: AAA domain (dy 95.5 0.012 2.6E-07 52.1 3.3 22 213-234 2-23 (139)
283 cd03230 ABC_DR_subfamily_A Thi 95.5 0.069 1.5E-06 49.3 8.5 123 210-341 26-168 (173)
284 PRK05022 anaerobic nitric oxid 95.5 0.023 5E-07 62.0 6.1 51 185-235 185-235 (509)
285 cd02027 APSK Adenosine 5'-phos 95.5 0.069 1.5E-06 48.0 8.2 24 212-235 1-24 (149)
286 KOG0743 AAA+-type ATPase [Post 95.5 0.21 4.5E-06 52.1 12.5 150 210-392 235-413 (457)
287 cd03115 SRP The signal recogni 95.5 0.053 1.1E-06 50.0 7.6 34 212-245 2-35 (173)
288 PRK14974 cell division protein 95.4 0.067 1.5E-06 54.7 8.9 29 209-237 139-167 (336)
289 TIGR02238 recomb_DMC1 meiotic 95.4 0.042 9.1E-07 55.8 7.4 65 198-267 84-154 (313)
290 cd00227 CPT Chloramphenicol (C 95.4 0.011 2.5E-07 54.7 3.0 25 211-235 3-27 (175)
291 cd03229 ABC_Class3 This class 95.4 0.037 8E-07 51.4 6.5 35 210-245 26-60 (178)
292 PRK12723 flagellar biosynthesi 95.4 0.11 2.4E-06 54.2 10.6 27 209-235 173-199 (388)
293 PRK03846 adenylylsulfate kinas 95.4 0.016 3.5E-07 54.8 4.2 37 209-245 23-59 (198)
294 COG0467 RAD55 RecA-superfamily 95.4 0.026 5.7E-07 55.9 5.8 44 202-245 15-58 (260)
295 PF00910 RNA_helicase: RNA hel 95.4 0.0075 1.6E-07 50.9 1.6 25 213-237 1-25 (107)
296 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.0096 2.1E-07 55.5 2.4 23 212-234 1-23 (183)
297 TIGR02974 phageshock_pspF psp 95.4 0.023 5.1E-07 58.2 5.5 45 189-233 1-45 (329)
298 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.08 1.7E-06 51.5 8.7 121 211-333 31-205 (254)
299 PRK05703 flhF flagellar biosyn 95.4 0.074 1.6E-06 56.5 9.2 36 210-245 221-258 (424)
300 cd01122 GP4d_helicase GP4d_hel 95.4 0.11 2.4E-06 51.6 10.2 53 209-267 29-82 (271)
301 PRK12724 flagellar biosynthesi 95.3 0.13 2.8E-06 53.9 10.7 25 210-234 223-247 (432)
302 cd02028 UMPK_like Uridine mono 95.3 0.014 3E-07 54.3 3.3 25 212-236 1-25 (179)
303 PRK13543 cytochrome c biogenes 95.3 0.12 2.6E-06 49.5 9.9 24 210-233 37-60 (214)
304 PLN03186 DNA repair protein RA 95.3 0.048 1E-06 56.0 7.4 66 197-267 110-181 (342)
305 TIGR01313 therm_gnt_kin carboh 95.3 0.082 1.8E-06 48.2 8.1 23 213-235 1-23 (163)
306 cd03215 ABC_Carb_Monos_II This 95.2 0.084 1.8E-06 49.2 8.3 35 210-245 26-60 (182)
307 PF00006 ATP-synt_ab: ATP synt 95.2 0.034 7.3E-07 53.2 5.5 83 211-299 16-115 (215)
308 PRK13949 shikimate kinase; Pro 95.2 0.015 3.4E-07 53.4 3.1 24 212-235 3-26 (169)
309 COG0703 AroK Shikimate kinase 95.2 0.03 6.5E-07 51.1 4.8 27 212-238 4-30 (172)
310 PTZ00088 adenylate kinase 1; P 95.2 0.021 4.6E-07 55.2 4.2 23 212-234 8-30 (229)
311 cd02020 CMPK Cytidine monophos 95.2 0.013 2.8E-07 52.2 2.6 23 212-234 1-23 (147)
312 PF00154 RecA: recA bacterial 95.1 0.072 1.6E-06 53.9 7.9 83 209-300 52-142 (322)
313 PF00625 Guanylate_kin: Guanyl 95.1 0.026 5.7E-07 52.6 4.6 36 210-245 2-37 (183)
314 PTZ00494 tuzin-like protein; P 95.1 0.65 1.4E-05 48.6 14.6 163 183-356 367-543 (664)
315 PRK14722 flhF flagellar biosyn 95.1 0.077 1.7E-06 55.0 8.3 36 210-245 137-174 (374)
316 PRK13948 shikimate kinase; Pro 95.1 0.017 3.6E-07 53.8 3.2 28 209-236 9-36 (182)
317 PF03205 MobB: Molybdopterin g 95.1 0.027 5.8E-07 50.1 4.3 35 211-245 1-36 (140)
318 cd02023 UMPK Uridine monophosp 95.1 0.013 2.7E-07 55.5 2.3 23 212-234 1-23 (198)
319 cd02024 NRK1 Nicotinamide ribo 95.1 0.013 2.9E-07 54.7 2.4 23 212-234 1-23 (187)
320 TIGR01069 mutS2 MutS2 family p 95.1 0.011 2.3E-07 67.4 2.1 111 288-408 401-521 (771)
321 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.058 1.2E-06 51.1 6.8 24 210-233 26-49 (200)
322 cd00464 SK Shikimate kinase (S 95.1 0.016 3.4E-07 52.2 2.8 23 213-235 2-24 (154)
323 PF10137 TIR-like: Predicted n 95.1 0.056 1.2E-06 46.8 6.0 59 15-76 2-61 (125)
324 COG1102 Cmk Cytidylate kinase 95.1 0.016 3.5E-07 51.7 2.6 24 212-235 2-25 (179)
325 cd02021 GntK Gluconate kinase 95.0 0.015 3.3E-07 52.2 2.6 23 212-234 1-23 (150)
326 PRK13946 shikimate kinase; Pro 95.0 0.017 3.8E-07 53.9 3.0 26 210-235 10-35 (184)
327 TIGR02322 phosphon_PhnN phosph 95.0 0.017 3.6E-07 53.7 2.9 25 211-235 2-26 (179)
328 PF06745 KaiC: KaiC; InterPro 95.0 0.039 8.4E-07 53.4 5.4 47 199-245 8-55 (226)
329 TIGR03499 FlhF flagellar biosy 95.0 0.094 2E-06 52.6 8.3 37 209-245 193-231 (282)
330 PRK12726 flagellar biosynthesi 95.0 0.13 2.9E-06 53.0 9.3 37 209-245 205-241 (407)
331 TIGR02655 circ_KaiC circadian 94.9 0.037 7.9E-07 60.0 5.5 97 196-299 249-363 (484)
332 KOG1970 Checkpoint RAD17-RFC c 94.9 0.18 4E-06 53.6 10.2 39 196-234 91-134 (634)
333 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.029 6.4E-07 55.5 4.4 48 198-245 24-71 (259)
334 PRK04328 hypothetical protein; 94.9 0.055 1.2E-06 53.2 6.2 47 199-245 12-58 (249)
335 cd03233 ABC_PDR_domain1 The pl 94.9 0.17 3.7E-06 48.0 9.4 26 210-235 33-58 (202)
336 PF13481 AAA_25: AAA domain; P 94.9 0.082 1.8E-06 49.6 7.2 25 211-235 33-57 (193)
337 cd03213 ABCG_EPDR ABCG transpo 94.9 0.15 3.4E-06 47.9 9.0 25 210-234 35-59 (194)
338 cd00071 GMPK Guanosine monopho 94.9 0.019 4.2E-07 50.8 2.7 27 212-238 1-27 (137)
339 COG0003 ArsA Predicted ATPase 94.9 0.033 7.1E-07 56.5 4.6 36 210-245 2-37 (322)
340 cd02025 PanK Pantothenate kina 94.9 0.016 3.4E-07 55.9 2.2 24 212-235 1-24 (220)
341 PRK12339 2-phosphoglycerate ki 94.8 0.023 4.9E-07 53.7 3.2 25 210-234 3-27 (197)
342 PTZ00035 Rad51 protein; Provis 94.8 0.094 2E-06 53.9 8.0 48 198-245 106-159 (337)
343 PRK12678 transcription termina 94.8 0.052 1.1E-06 58.4 6.2 100 199-301 406-515 (672)
344 COG1428 Deoxynucleoside kinase 94.8 0.02 4.4E-07 53.5 2.8 26 210-235 4-29 (216)
345 COG1136 SalX ABC-type antimicr 94.8 0.18 3.8E-06 48.4 9.1 63 277-342 148-216 (226)
346 KOG0652 26S proteasome regulat 94.8 0.34 7.4E-06 46.7 10.9 140 210-373 205-372 (424)
347 COG1936 Predicted nucleotide k 94.8 0.02 4.4E-07 51.8 2.6 20 212-231 2-21 (180)
348 PRK14738 gmk guanylate kinase; 94.8 0.028 6.1E-07 53.6 3.8 32 202-233 5-36 (206)
349 PRK05057 aroK shikimate kinase 94.8 0.025 5.5E-07 52.2 3.4 25 211-235 5-29 (172)
350 TIGR00064 ftsY signal recognit 94.8 0.033 7.2E-07 55.4 4.4 37 209-245 71-107 (272)
351 PRK04301 radA DNA repair and r 94.7 0.048 1E-06 55.7 5.6 58 199-260 91-154 (317)
352 KOG2035 Replication factor C, 94.7 0.37 8.1E-06 47.0 11.0 223 188-426 14-282 (351)
353 PRK09519 recA DNA recombinatio 94.7 0.056 1.2E-06 60.9 6.3 93 198-299 47-148 (790)
354 PRK14530 adenylate kinase; Pro 94.7 0.024 5.1E-07 54.5 3.0 23 212-234 5-27 (215)
355 PF00406 ADK: Adenylate kinase 94.7 0.056 1.2E-06 48.6 5.3 20 215-234 1-20 (151)
356 TIGR02524 dot_icm_DotB Dot/Icm 94.7 0.039 8.5E-07 57.1 4.8 93 210-308 134-231 (358)
357 TIGR00150 HI0065_YjeE ATPase, 94.6 0.015 3.3E-07 50.9 1.4 25 210-234 22-46 (133)
358 PRK13975 thymidylate kinase; P 94.6 0.026 5.7E-07 53.1 3.1 26 211-236 3-28 (196)
359 PRK04182 cytidylate kinase; Pr 94.6 0.027 5.9E-07 52.1 3.1 24 212-235 2-25 (180)
360 PRK10463 hydrogenase nickel in 94.6 0.033 7.1E-07 55.5 3.8 35 209-243 103-137 (290)
361 cd03300 ABC_PotA_N PotA is an 94.6 0.2 4.2E-06 48.7 9.2 25 210-234 26-50 (232)
362 KOG1051 Chaperone HSP104 and r 94.6 0.12 2.6E-06 58.8 8.5 102 188-301 563-672 (898)
363 COG1875 NYN ribonuclease and A 94.6 0.074 1.6E-06 53.8 6.1 23 209-231 244-266 (436)
364 KOG3347 Predicted nucleotide k 94.5 0.025 5.5E-07 49.7 2.5 23 211-233 8-30 (176)
365 KOG1532 GTPase XAB1, interacts 94.5 0.031 6.7E-07 54.1 3.3 32 209-240 18-49 (366)
366 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.036 7.7E-07 54.1 3.9 47 199-245 10-56 (237)
367 PF03266 NTPase_1: NTPase; In 94.5 0.037 7.9E-07 50.9 3.7 24 213-236 2-25 (168)
368 PRK08533 flagellar accessory p 94.5 0.043 9.2E-07 53.3 4.4 48 198-245 12-59 (230)
369 KOG0729 26S proteasome regulat 94.5 0.039 8.4E-07 53.1 3.9 28 209-236 210-237 (435)
370 PRK03731 aroL shikimate kinase 94.5 0.028 6.1E-07 51.7 2.9 24 212-235 4-27 (171)
371 PF13245 AAA_19: Part of AAA d 94.5 0.056 1.2E-06 42.4 4.1 23 210-232 10-32 (76)
372 TIGR03263 guanyl_kin guanylate 94.5 0.026 5.7E-07 52.3 2.7 24 211-234 2-25 (180)
373 cd01124 KaiC KaiC is a circadi 94.5 0.032 6.9E-07 52.0 3.3 33 213-245 2-34 (187)
374 COG3854 SpoIIIAA ncharacterize 94.5 0.14 3E-06 48.6 7.3 108 212-325 139-251 (308)
375 COG2842 Uncharacterized ATPase 94.5 0.21 4.5E-06 49.3 8.9 121 180-309 65-187 (297)
376 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.07 1.5E-06 55.3 6.0 103 210-329 62-169 (362)
377 TIGR02239 recomb_RAD51 DNA rep 94.5 0.1 2.3E-06 53.1 7.2 49 197-245 83-137 (316)
378 PRK15453 phosphoribulokinase; 94.4 0.045 9.8E-07 54.1 4.2 37 209-245 4-40 (290)
379 PRK12727 flagellar biosynthesi 94.4 0.12 2.6E-06 55.6 7.7 36 210-245 350-387 (559)
380 PRK15115 response regulator Gl 94.4 0.084 1.8E-06 56.7 6.8 48 187-234 134-181 (444)
381 PRK09270 nucleoside triphospha 94.4 0.034 7.3E-07 54.0 3.4 29 209-237 32-60 (229)
382 CHL00206 ycf2 Ycf2; Provisiona 94.4 0.36 7.7E-06 58.9 12.1 27 209-235 1629-1655(2281)
383 COG5635 Predicted NTPase (NACH 94.4 0.051 1.1E-06 62.9 5.3 191 210-406 222-446 (824)
384 COG0529 CysC Adenylylsulfate k 94.4 0.048 1E-06 49.5 4.0 37 209-245 22-58 (197)
385 PF12775 AAA_7: P-loop contain 94.4 0.041 8.8E-07 54.8 3.9 25 211-235 34-58 (272)
386 PRK08149 ATP synthase SpaL; Va 94.4 0.11 2.5E-06 54.7 7.3 86 210-300 151-252 (428)
387 COG0465 HflB ATP-dependent Zn 94.4 0.21 4.6E-06 54.5 9.5 175 186-384 149-357 (596)
388 PRK10820 DNA-binding transcrip 94.3 0.059 1.3E-06 59.0 5.4 50 184-233 201-250 (520)
389 PRK10751 molybdopterin-guanine 94.3 0.05 1.1E-06 50.0 4.1 28 209-236 5-32 (173)
390 TIGR03600 phage_DnaB phage rep 94.3 0.55 1.2E-05 50.0 12.7 74 189-269 174-248 (421)
391 cd01129 PulE-GspE PulE/GspE Th 94.3 0.095 2.1E-06 52.0 6.4 90 210-309 80-169 (264)
392 cd00046 DEXDc DEAD-like helica 94.3 0.16 3.5E-06 43.9 7.4 34 212-245 2-37 (144)
393 PRK10078 ribose 1,5-bisphospho 94.3 0.032 6.8E-07 52.2 2.9 25 211-235 3-27 (186)
394 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.045 9.8E-07 53.0 4.1 46 200-245 10-55 (229)
395 PRK14527 adenylate kinase; Pro 94.3 0.035 7.6E-07 52.2 3.2 26 209-234 5-30 (191)
396 TIGR02236 recomb_radA DNA repa 94.3 0.075 1.6E-06 54.1 5.8 58 199-260 84-147 (310)
397 cd03236 ABC_RNaseL_inhibitor_d 94.3 0.22 4.8E-06 49.1 8.9 25 210-234 26-50 (255)
398 COG3640 CooC CO dehydrogenase 94.3 0.058 1.2E-06 51.3 4.4 26 212-237 2-27 (255)
399 COG1124 DppF ABC-type dipeptid 94.3 0.045 9.8E-07 52.4 3.8 23 210-232 33-55 (252)
400 PF02374 ArsA_ATPase: Anion-tr 94.3 0.055 1.2E-06 54.8 4.6 35 211-245 2-36 (305)
401 PRK08972 fliI flagellum-specif 94.3 0.11 2.4E-06 54.7 6.9 87 210-301 162-264 (444)
402 KOG2004 Mitochondrial ATP-depe 94.2 0.02 4.3E-07 62.3 1.5 52 187-238 411-466 (906)
403 PRK00300 gmk guanylate kinase; 94.2 0.033 7.1E-07 52.9 2.8 26 210-235 5-30 (205)
404 PRK08927 fliI flagellum-specif 94.2 0.14 3.1E-06 54.0 7.7 26 210-235 158-183 (442)
405 PRK05922 type III secretion sy 94.2 0.15 3.2E-06 53.9 7.7 26 210-235 157-182 (434)
406 TIGR02173 cyt_kin_arch cytidyl 94.2 0.038 8.3E-07 50.6 3.1 23 212-234 2-24 (171)
407 KOG0727 26S proteasome regulat 94.2 0.029 6.3E-07 53.5 2.2 52 188-239 156-218 (408)
408 PLN02200 adenylate kinase fami 94.2 0.039 8.6E-07 53.6 3.2 25 210-234 43-67 (234)
409 PRK13765 ATP-dependent proteas 94.1 0.027 5.9E-07 62.5 2.3 75 184-267 28-103 (637)
410 cd01672 TMPK Thymidine monopho 94.1 0.084 1.8E-06 49.5 5.4 25 212-236 2-26 (200)
411 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.13 2.7E-06 49.7 6.7 47 199-245 5-51 (224)
412 cd01136 ATPase_flagellum-secre 94.1 0.15 3.2E-06 51.9 7.3 27 210-236 69-95 (326)
413 cd01130 VirB11-like_ATPase Typ 94.1 0.015 3.3E-07 54.4 0.2 91 210-308 25-119 (186)
414 PF10236 DAP3: Mitochondrial r 94.1 1.2 2.5E-05 45.4 13.8 48 338-385 258-306 (309)
415 PRK06002 fliI flagellum-specif 94.1 0.13 2.8E-06 54.4 7.1 86 210-300 165-265 (450)
416 cd01983 Fer4_NifH The Fer4_Nif 94.1 0.046 1E-06 44.4 3.1 25 212-236 1-25 (99)
417 PF13521 AAA_28: AAA domain; P 94.1 0.044 9.6E-07 50.0 3.2 21 213-233 2-22 (163)
418 PRK05439 pantothenate kinase; 94.0 0.036 7.8E-07 55.9 2.7 28 209-236 85-112 (311)
419 KOG0739 AAA+-type ATPase [Post 94.0 0.71 1.5E-05 45.6 11.3 171 187-381 133-334 (439)
420 PF03308 ArgK: ArgK protein; 94.0 0.031 6.8E-07 54.2 2.1 30 208-237 27-56 (266)
421 PRK14493 putative bifunctional 94.0 0.053 1.1E-06 53.9 3.8 34 211-245 2-35 (274)
422 PRK14532 adenylate kinase; Pro 94.0 0.04 8.6E-07 51.6 2.8 22 213-234 3-24 (188)
423 TIGR00455 apsK adenylylsulfate 94.0 0.17 3.7E-06 47.1 7.1 26 210-235 18-43 (184)
424 PRK09280 F0F1 ATP synthase sub 94.0 0.12 2.7E-06 54.8 6.7 88 210-300 144-249 (463)
425 cd01857 HSR1_MMR1 HSR1/MMR1. 94.0 0.46 1E-05 42.1 9.6 22 212-233 85-106 (141)
426 PRK13657 cyclic beta-1,2-gluca 93.9 0.17 3.7E-06 56.5 8.2 24 210-233 361-384 (588)
427 PRK13768 GTPase; Provisional 93.9 0.057 1.2E-06 53.2 4.0 34 211-244 3-36 (253)
428 COG0237 CoaE Dephospho-CoA kin 93.9 0.043 9.3E-07 51.8 2.9 22 211-232 3-24 (201)
429 cd01135 V_A-ATPase_B V/A-type 93.9 0.19 4.2E-06 49.5 7.6 88 210-301 69-178 (276)
430 cd01428 ADK Adenylate kinase ( 93.9 0.04 8.7E-07 51.7 2.7 22 213-234 2-23 (194)
431 PRK06761 hypothetical protein; 93.9 0.068 1.5E-06 53.2 4.4 34 211-244 4-38 (282)
432 TIGR00176 mobB molybdopterin-g 93.9 0.051 1.1E-06 49.2 3.2 32 212-243 1-33 (155)
433 cd01858 NGP_1 NGP-1. Autoanti 93.9 0.21 4.5E-06 45.2 7.3 22 211-232 103-124 (157)
434 PRK07132 DNA polymerase III su 93.9 1.4 3.1E-05 44.4 13.9 153 210-387 18-184 (299)
435 TIGR03522 GldA_ABC_ATP gliding 93.9 0.36 7.8E-06 48.9 9.8 24 210-233 28-51 (301)
436 TIGR00554 panK_bact pantothena 93.8 0.049 1.1E-06 54.5 3.2 27 209-235 61-87 (290)
437 COG2019 AdkA Archaeal adenylat 93.8 0.05 1.1E-06 48.9 2.9 25 210-234 4-28 (189)
438 TIGR00041 DTMP_kinase thymidyl 93.8 0.11 2.4E-06 48.8 5.6 26 211-236 4-29 (195)
439 TIGR00073 hypB hydrogenase acc 93.8 0.062 1.4E-06 51.2 3.9 37 208-245 20-56 (207)
440 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.16 3.5E-06 50.1 6.8 88 210-301 69-173 (274)
441 PRK11174 cysteine/glutathione 93.8 0.19 4E-06 56.2 8.2 26 209-234 375-400 (588)
442 PRK14737 gmk guanylate kinase; 93.8 0.054 1.2E-06 50.7 3.3 26 209-234 3-28 (186)
443 TIGR03498 FliI_clade3 flagella 93.8 0.18 3.9E-06 53.1 7.6 86 210-300 140-241 (418)
444 COG2884 FtsE Predicted ATPase 93.8 0.47 1E-05 43.9 9.1 59 276-334 142-204 (223)
445 COG1763 MobB Molybdopterin-gua 93.8 0.067 1.5E-06 48.5 3.7 36 210-245 2-37 (161)
446 COG0488 Uup ATPase components 93.8 0.23 5E-06 54.0 8.5 61 280-343 162-225 (530)
447 PF08477 Miro: Miro-like prote 93.8 0.048 1E-06 46.5 2.7 21 213-233 2-22 (119)
448 PRK14531 adenylate kinase; Pro 93.7 0.048 1E-06 50.9 2.9 23 212-234 4-26 (183)
449 PF13086 AAA_11: AAA domain; P 93.7 0.092 2E-06 50.5 5.0 23 212-234 19-41 (236)
450 TIGR02655 circ_KaiC circadian 93.7 0.11 2.5E-06 56.3 6.1 45 201-245 12-57 (484)
451 TIGR00390 hslU ATP-dependent p 93.7 0.03 6.5E-07 58.4 1.5 29 210-238 47-75 (441)
452 PRK13409 putative ATPase RIL; 93.7 0.25 5.4E-06 55.0 8.8 25 210-234 365-389 (590)
453 PRK06793 fliI flagellum-specif 93.7 0.27 5.9E-06 51.9 8.6 117 210-333 156-292 (432)
454 PF03029 ATP_bind_1: Conserved 93.7 0.057 1.2E-06 52.6 3.3 23 215-237 1-23 (238)
455 PRK10416 signal recognition pa 93.7 0.083 1.8E-06 53.8 4.6 37 209-245 113-149 (318)
456 PRK10875 recD exonuclease V su 93.6 0.34 7.3E-06 53.8 9.7 25 210-234 167-191 (615)
457 PRK13545 tagH teichoic acids e 93.6 0.3 6.5E-06 52.8 8.9 25 210-234 50-74 (549)
458 PRK13695 putative NTPase; Prov 93.6 0.064 1.4E-06 49.5 3.5 33 212-244 2-35 (174)
459 PRK05537 bifunctional sulfate 93.6 0.043 9.4E-07 60.4 2.7 50 187-236 369-418 (568)
460 cd03285 ABC_MSH2_euk MutS2 hom 93.6 0.029 6.3E-07 54.1 1.1 24 209-232 29-52 (222)
461 PRK12597 F0F1 ATP synthase sub 93.6 0.16 3.4E-06 54.1 6.7 88 210-300 143-248 (461)
462 PF06414 Zeta_toxin: Zeta toxi 93.6 0.12 2.6E-06 48.9 5.3 93 208-308 13-112 (199)
463 smart00072 GuKc Guanylate kina 93.6 0.069 1.5E-06 49.9 3.6 30 210-239 2-31 (184)
464 PRK09825 idnK D-gluconate kina 93.6 0.056 1.2E-06 50.1 3.0 25 211-235 4-28 (176)
465 TIGR01447 recD exodeoxyribonuc 93.6 0.27 5.9E-06 54.4 8.8 26 210-235 160-185 (586)
466 PRK05201 hslU ATP-dependent pr 93.5 0.035 7.5E-07 57.9 1.7 29 210-238 50-78 (443)
467 PF06068 TIP49: TIP49 C-termin 93.5 0.042 9.2E-07 55.9 2.2 59 185-243 22-83 (398)
468 PF09848 DUF2075: Uncharacteri 93.5 0.21 4.6E-06 51.8 7.5 35 211-245 2-38 (352)
469 cd03114 ArgK-like The function 93.5 0.07 1.5E-06 47.9 3.4 26 212-237 1-26 (148)
470 PHA02530 pseT polynucleotide k 93.5 0.056 1.2E-06 54.7 3.1 24 211-234 3-26 (300)
471 cd02022 DPCK Dephospho-coenzym 93.5 0.047 1E-06 50.7 2.3 21 212-232 1-21 (179)
472 COG0714 MoxR-like ATPases [Gen 93.5 0.038 8.1E-07 56.8 1.8 49 188-240 25-73 (329)
473 cd00820 PEPCK_HprK Phosphoenol 93.5 0.062 1.3E-06 45.1 2.7 22 210-231 15-36 (107)
474 PRK10923 glnG nitrogen regulat 93.5 0.077 1.7E-06 57.4 4.3 48 187-234 138-185 (469)
475 COG1703 ArgK Putative periplas 93.5 0.038 8.2E-07 54.4 1.7 36 202-237 43-78 (323)
476 TIGR02788 VirB11 P-type DNA tr 93.5 0.084 1.8E-06 53.7 4.3 108 210-328 144-254 (308)
477 TIGR01287 nifH nitrogenase iro 93.5 0.07 1.5E-06 53.3 3.7 26 211-236 1-26 (275)
478 PRK12338 hypothetical protein; 93.5 0.062 1.3E-06 54.3 3.2 25 210-234 4-28 (319)
479 PHA02244 ATPase-like protein 93.4 0.03 6.5E-07 57.4 1.0 48 185-236 94-145 (383)
480 TIGR01039 atpD ATP synthase, F 93.4 0.19 4.1E-06 53.2 6.9 88 210-300 143-248 (461)
481 cd02034 CooC The accessory pro 93.4 0.083 1.8E-06 45.3 3.5 33 213-245 2-34 (116)
482 TIGR00764 lon_rel lon-related 93.4 0.069 1.5E-06 59.4 3.8 55 187-245 18-73 (608)
483 TIGR03496 FliI_clade1 flagella 93.4 0.2 4.2E-06 52.8 7.0 27 210-236 137-163 (411)
484 PRK01184 hypothetical protein; 93.3 0.059 1.3E-06 50.2 2.8 22 211-233 2-23 (184)
485 KOG0735 AAA+-type ATPase [Post 93.3 0.94 2E-05 49.9 11.9 173 188-384 668-872 (952)
486 PF00005 ABC_tran: ABC transpo 93.3 0.08 1.7E-06 46.5 3.4 26 210-235 11-36 (137)
487 TIGR01351 adk adenylate kinase 93.3 0.059 1.3E-06 51.5 2.7 22 213-234 2-23 (210)
488 KOG0058 Peptide exporter, ABC 93.3 0.066 1.4E-06 58.8 3.3 23 210-232 494-516 (716)
489 COG2274 SunT ABC-type bacterio 93.3 0.33 7.2E-06 54.8 8.9 24 210-233 499-522 (709)
490 PLN02348 phosphoribulokinase 93.3 0.071 1.5E-06 55.2 3.4 29 208-236 47-75 (395)
491 PLN02924 thymidylate kinase 93.2 0.22 4.7E-06 47.9 6.6 28 210-237 16-43 (220)
492 TIGR03497 FliI_clade2 flagella 93.2 0.22 4.8E-06 52.5 7.1 28 209-236 136-163 (413)
493 PF03796 DnaB_C: DnaB-like hel 93.2 0.16 3.6E-06 50.1 5.9 56 210-271 19-75 (259)
494 PLN02318 phosphoribulokinase/u 93.2 0.06 1.3E-06 58.4 2.9 28 207-234 62-89 (656)
495 PRK11388 DNA-binding transcrip 93.2 0.14 3E-06 57.8 5.9 49 186-234 324-372 (638)
496 PRK00279 adk adenylate kinase; 93.2 0.066 1.4E-06 51.3 2.9 23 212-234 2-24 (215)
497 COG0194 Gmk Guanylate kinase [ 93.2 0.096 2.1E-06 48.1 3.7 25 210-234 4-28 (191)
498 PLN02165 adenylate isopentenyl 93.1 0.089 1.9E-06 53.4 3.8 26 210-235 43-68 (334)
499 PRK08472 fliI flagellum-specif 93.1 0.22 4.7E-06 52.7 6.8 26 210-235 157-182 (434)
500 PRK05818 DNA polymerase III su 93.1 9.6 0.00021 37.5 18.2 150 289-455 88-244 (261)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.2e-99 Score=883.97 Aligned_cols=555 Identities=37% Similarity=0.634 Sum_probs=505.4
Q ss_pred CCCCCCCCCCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcCCCCCCCCccHHHHHHhhhcceEEEEeecCcccc
Q 038826 1 MASSSSSCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDEQLKKGDDIPSALLNAIEESKISVIIFSKGYASS 80 (572)
Q Consensus 1 m~~s~~~~~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 80 (572)
||+|||+++.++|||||||||+|+|++|++||+++|.++||++|+|+++++|+.+.+++.+||++|+++|||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 89999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhccCceeeeeeeecCCCcccCCCCchHHHHHHhhhhcCCChhhHhhHHHHHHhhhhhccccccccc
Q 038826 81 TWCLHELVKILECKKRKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDTPQKVHKWRAALTQASNLCGWDSMKIR 160 (572)
Q Consensus 81 ~~c~~El~~~~~~~~~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 160 (572)
+||++||++|++|++..+++|+||||+|+|+|||+|+|.|+++|.+++.+.. .+++++|++||+++++++||++..+.
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecCCCC
Confidence 9999999999999998999999999999999999999999999999877543 46799999999999999999997789
Q ss_pred chHHHHHHHHHhhhhhccCCCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccce
Q 038826 161 TEAELVDEIVKDILKKIHDIPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEG 240 (572)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (572)
+|+++|++|+++|.++++ .+++.+.+.+|||+.++++|..+|..+.+++++|+|+||||+||||||+++|+++..+|++
T Consensus 159 ~E~~~i~~Iv~~v~~~l~-~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLN-LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CHHHHHHHHHHHHHHhhc-cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 999999999999999998 8888888999999999999999998777789999999999999999999999999999999
Q ss_pred EEEEeec--cc---cccc-----c-cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChhhhHHHhc
Q 038826 241 WCFMANV--RE---ESKR-----V-ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTG 309 (572)
Q Consensus 241 ~~wv~~~--~~---~s~~-----~-~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~ 309 (572)
.+|+.+. .. .... . ....++.+++..+.....-.. .....++++++++|+||||||||+..+|+.+..
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~-~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~ 316 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI-YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAG 316 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc-CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHh
Confidence 9988631 11 0000 1 123456666666654432111 123567889999999999999999999999998
Q ss_pred CCCCCCCCcEEEEEeCCchhhhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 310 GLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 310 ~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
...++++||+||||||++.++..+++.++|+|+.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+++|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 88888999999999999999988888899999999999999999999998877777889999999999999999999999
Q ss_pred hHhcCCCHHHHHHHHcCCcCCCcccHHHHHHHhhccCCh-hhHHHHhhhcccCCCCCHHHHHHHHhhc-cchHHHHHHHh
Q 038826 390 SSFYRKSKQHWENALHNPKQISDPDIHDMLKISYDELNY-KEKDLFLDIACFFNGEGRDYVKIILNNR-YLVHYGLNILA 467 (572)
Q Consensus 390 ~~L~~~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~-~~k~~fl~la~fp~~~~~~~l~~~w~~~-~~~~~~l~~L~ 467 (572)
++|++++..+|+.++++++...+.+|..+|++||+.|++ .+|.||+++||||.+.+.+.+..++..+ +.++.+++.|+
T Consensus 397 s~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~ 476 (1153)
T PLN03210 397 SYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLV 476 (1153)
T ss_pred HHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHH
Confidence 999999999999999999988888999999999999987 5999999999999999998887777777 88888999999
Q ss_pred hCCceEeeCCeEEecHHHHHHHHHHHhhhcCCCCCCceEeecccchhhHhhhcCCCCCceEEEEEecCCCeeeccChhhh
Q 038826 468 GKAIITISNNKLQMRDLLQEMGQRVVCHESYKDPGKCSSCLWYHEDVYHVRKKNKGTDSIKGMSLYTSKVSEIHLSSRGF 547 (572)
Q Consensus 468 ~~sLi~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~r~l~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~f 547 (572)
++|||+...+++.||||+|+||++++++++ .+|++++| +|.+.++.+++.++.++..+++|.+|++...++.+.++.|
T Consensus 477 ~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~-l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 477 DKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREF-LVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred hcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCccee-EeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999988899999999999999999987 78999999 9999999999999999999999999999998899999999
Q ss_pred cCCCCCcEEEEecC
Q 038826 548 AKMLNLKLLKFYMH 561 (572)
Q Consensus 548 ~~m~~Lr~L~l~~~ 561 (572)
.+|++||+|+++++
T Consensus 555 ~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 555 KGMRNLLFLKFYTK 568 (1153)
T ss_pred hcCccccEEEEecc
Confidence 99999999999743
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-56 Score=498.04 Aligned_cols=371 Identities=21% Similarity=0.271 Sum_probs=318.4
Q ss_pred cccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh---cccccceEEEEeecccccccccHHHHHHHHHHH
Q 038826 190 VGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ---ISSQFEGWCFMANVREESKRVELVHLRDQIVSQ 266 (572)
Q Consensus 190 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~ 266 (572)
||.+..++.+.+.|..+.. .+++|+||||+||||||++++|+ ++.+|+.++||. +|+.++...++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999997743 89999999999999999999993 778999999999 99999999999999999
Q ss_pred hhCCCCcc----ccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhh-cCCceEEEe
Q 038826 267 ILGESTVE----TSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK-YGVDYVYKV 341 (572)
Q Consensus 267 l~~~~~~~----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~-~~~~~~~~l 341 (572)
++...... .++.+..+.+.|+++|+||||||||+..+|+.+..++|...+||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 88755522 3578889999999999999999999999999999999988889999999999999998 888889999
Q ss_pred cCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCC-CHHHHHHHHcCCcCC-----C--c
Q 038826 342 EGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-SKQHWENALHNPKQI-----S--D 412 (572)
Q Consensus 342 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~--~ 412 (572)
+.|+++|||+||++.+|... ...+..+++|++++++|+|+|||++++|+.|+.| +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998764 3345589999999999999999999999999987 788999999998765 1 3
Q ss_pred ccHHHHHHHhhccCChhhHHHHhhhcccCCCC--CHHHHHHHHhhc-cc------------hHHHHHHHhhCCceEeeC-
Q 038826 413 PDIHDMLKISYDELNYKEKDLFLDIACFFNGE--GRDYVKIILNNR-YL------------VHYGLNILAGKAIITISN- 476 (572)
Q Consensus 413 ~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-~~------------~~~~l~~L~~~sLi~~~~- 476 (572)
+.+..++++||+.||++.|.||+|||+||+++ +++.|+.+|+|+ |. +.+++++|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999997 889999999998 53 345999999999999873
Q ss_pred ----CeEEecHHHHHHHHHHHh-----hhc--------------CCCCCCceEeecccchhhHhhhcCCCCCceEEEEEe
Q 038826 477 ----NKLQMRDLLQEMGQRVVC-----HES--------------YKDPGKCSSCLWYHEDVYHVRKKNKGTDSIKGMSLY 533 (572)
Q Consensus 477 ----~~~~mHdlv~~~a~~i~~-----~e~--------------~~~~~~~~r~l~~~~~~~~~l~~~~~~~~~~~i~l~ 533 (572)
.+|+|||+|||||..++. +|+ ..++ ...|++.........+.....+.+++++.+.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEEEeccchhhccCCCCCCccceEEEe
Confidence 569999999999999998 332 0112 2233366666666666666677778888765
Q ss_pred cCCCeeeccChhhhcCCCCCcEEEEecCCcCCCC
Q 038826 534 TSKVSEIHLSSRGFAKMLNLKLLKFYMHNHFDDL 567 (572)
Q Consensus 534 ~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~ 567 (572)
........++..+|..|+.||||||+.|..+..+
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 5432246778899999999999999876665544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.5e-43 Score=353.95 Aligned_cols=264 Identities=27% Similarity=0.400 Sum_probs=214.1
Q ss_pred cccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh--cccccceEEEEeecccccccccHHHHHHHHHHHhhC
Q 038826 192 LDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ--ISSQFEGWCFMANVREESKRVELVHLRDQIVSQILG 269 (572)
Q Consensus 192 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~ 269 (572)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ ++.+|+.++|+. ++...+...++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 788999999999886667999999999999999999999997 889999999999 67777778999999999987
Q ss_pred CCCc-----cccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCC-ceEEEecC
Q 038826 270 ESTV-----ETSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGV-DYVYKVEG 343 (572)
Q Consensus 270 ~~~~-----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~-~~~~~l~~ 343 (572)
...+ ..+.....+.+.|.++++||||||||+...|+.+...++..+.||+||||||+..++..++. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7431 14567888999999999999999999999998888877777789999999999999877654 67899999
Q ss_pred CChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCC-CHHHHHHHHcCCcCC------CcccH
Q 038826 344 FNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-SKQHWENALHNPKQI------SDPDI 415 (572)
Q Consensus 344 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~------~~~~v 415 (572)
|+.++|++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|..+++++... ....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3345567789999999999999999999999654 667888888764432 24679
Q ss_pred HHHHHHhhccCChhhHHHHhhhcccCCCC--CHHHHHHHHhhc-cch
Q 038826 416 HDMLKISYDELNYKEKDLFLDIACFFNGE--GRDYVKIILNNR-YLV 459 (572)
Q Consensus 416 ~~~l~~Sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-~~~ 459 (572)
..++.+||+.||++.|+||++||+||.++ +.+.++.+|.++ +..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999986 699999999998 543
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=302.68 Aligned_cols=156 Identities=31% Similarity=0.544 Sum_probs=142.3
Q ss_pred CCCCCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhH
Q 038826 6 SSCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCL 84 (572)
Q Consensus 6 ~~~~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 84 (572)
||+.+++|||||||+|+|+|.+|++||+++|+++||+||+|+ ++++|+.+.+.|.+||++|+++|||||++|++|+||+
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 455678899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCceeeeeeeecCCCcccCC-CCchHHHHHHhhhhcCCChhhHhhHHHHHHhhhhhccccccc-ccch
Q 038826 85 HELVKILECKKRKGQIVMPVFYNVDPSDVRNQ-TGSFGDAFVEHENDFRDTPQKVHKWRAALTQASNLCGWDSMK-IRTE 162 (572)
Q Consensus 85 ~El~~~~~~~~~~~~~v~Pify~v~p~~vr~q-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e 162 (572)
+||++|++++ ..|+||||+|+|++||+| .|. ...+++++|+.||++++++.|+.+.. .++|
T Consensus 100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 100 HELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred HHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 9999999874 479999999999999997 332 13478999999999999999997743 5779
Q ss_pred HHHHHHHHHhhhhhcc
Q 038826 163 AELVDEIVKDILKKIH 178 (572)
Q Consensus 163 ~~~i~~i~~~v~~~l~ 178 (572)
+++|++|++.|.+++.
T Consensus 163 ~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 163 SEVVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998875
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.84 E-value=1.2e-21 Score=175.76 Aligned_cols=132 Identities=34% Similarity=0.593 Sum_probs=114.4
Q ss_pred EEecCcccccccchHHHHHHHHhhC--CCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHHHHHH
Q 038826 15 VFLSFRGEDTRNNFTSHLFAAFCRE--KIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHELVKIL 91 (572)
Q Consensus 15 vFis~~~~D~~~~f~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 91 (572)
|||||++.|++..|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|||++|++|+||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444456999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred Hhhhcc--CceeeeeeeecCCCccc-CCCCchHHHHHHhhhhcCCC--hhhHhhHHHHHH
Q 038826 92 ECKKRK--GQIVMPVFYNVDPSDVR-NQTGSFGDAFVEHENDFRDT--PQKVHKWRAALT 146 (572)
Q Consensus 92 ~~~~~~--~~~v~Pify~v~p~~vr-~q~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 146 (572)
++.... ...|+|+||++.+.+++ .+.+.|...+.....-..+. ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 999554 47999999999999999 78888998888877766554 456788988764
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.81 E-value=1.1e-19 Score=162.96 Aligned_cols=136 Identities=39% Similarity=0.700 Sum_probs=114.1
Q ss_pred cccEEecCcc-cccccchHHHHHHHHhhCCCeEEEcCCCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHHHHH
Q 038826 12 KYDVFLSFRG-EDTRNNFTSHLFAAFCREKIKTFIDEQLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHELVKI 90 (572)
Q Consensus 12 ~~dvFis~~~-~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 90 (572)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 4556789999999999999999999844333333 3999999999999999999999999999999999
Q ss_pred HHhhh-ccCceeeeeeeecCCCcccCCCCchHHHHHHhhhhcCCChhhHhhHHHHHHhhh
Q 038826 91 LECKK-RKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDTPQKVHKWRAALTQAS 149 (572)
Q Consensus 91 ~~~~~-~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 149 (572)
+.+.. ....+||||+|+..|+.+..+.+.++.++......+.++..+ ..|++++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 98874 366799999999889889999999999998875555554322 68988887664
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=7.9e-14 Score=162.93 Aligned_cols=291 Identities=11% Similarity=0.109 Sum_probs=187.8
Q ss_pred CCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccc-ccccHHHHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREES-KRVELVHLR 260 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s-~~~~~~~l~ 260 (572)
||..+..+|-|+.-++.+... ...+++.|+|++|.||||++.++.++. +.++|+. .. ...+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHH
Confidence 555667888888766655322 247899999999999999999988643 2688997 43 334556666
Q ss_pred HHHHHHhhCCCCc----c--------ccc---hHHHHHHHhh--cCceEEEEecCCChh------hhHHHhcCCCCCCCC
Q 038826 261 DQIVSQILGESTV----E--------TSI---LPQCIKKRLQ--QMNVCIILDKVDKFG------HSEYLTGGLSRFGHG 317 (572)
Q Consensus 261 ~~il~~l~~~~~~----~--------~~~---~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~g 317 (572)
..++..+...... . ... ....+...+. +.+++|||||+...+ .+..+.... .++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~ 152 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PEN 152 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCC
Confidence 6666666422110 0 011 1222222332 578999999995432 233344333 367
Q ss_pred cEEEEEeCCchhhhh--cC-CceEEEec----CCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 318 SRVIVTTRDKKVLDK--YG-VDYVYKVE----GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 318 s~IIvTTR~~~v~~~--~~-~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
.++|||||...-... .. .....++. +|+.+|+.+||...... .-..+.+.++.+.|+|+|+++..++.
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 789999998432211 10 12344555 89999999999765421 11235578999999999999999887
Q ss_pred HhcCCCHHHHHHHHcCCcCCCcccHHHHHHHh-hccCChhhHHHHhhhcccCCCCCHHHHHHHHhhccchHHHHHHHhhC
Q 038826 391 SFYRKSKQHWENALHNPKQISDPDIHDMLKIS-YDELNYKEKDLFLDIACFFNGEGRDYVKIILNNRYLVHYGLNILAGK 469 (572)
Q Consensus 391 ~L~~~~~~~w~~~l~~l~~~~~~~v~~~l~~S-y~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~~~~~~~~l~~L~~~ 469 (572)
.+...+.. .......+.......+...+.-. ++.||++.+..++.+|+++ .++.+.+..+... -.....+++|.+.
T Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~-~~~~~~L~~l~~~ 304 (903)
T PRK04841 228 SARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE-ENGQMRLEELERQ 304 (903)
T ss_pred HHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC-CcHHHHHHHHHHC
Confidence 77543210 01111112111233466654444 8899999999999999986 6666655555432 3457789999999
Q ss_pred CceEee----CCeEEecHHHHHHHHHHHhhh
Q 038826 470 AIITIS----NNKLQMRDLLQEMGQRVVCHE 496 (572)
Q Consensus 470 sLi~~~----~~~~~mHdlv~~~a~~i~~~e 496 (572)
+++... ...|+.|+|++++.+.....+
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 997643 236999999999999887444
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.58 E-value=7.4e-16 Score=130.02 Aligned_cols=87 Identities=30% Similarity=0.608 Sum_probs=75.2
Q ss_pred EEecCcccccccchHHHHHHHHhhCCCeEEEcCCCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHHHHHHHhh
Q 038826 15 VFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDEQLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHELVKILECK 94 (572)
Q Consensus 15 vFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~ 94 (572)
|||||+++| ..++.+|.+.|+.+|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|+.|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 669999999999999999999999999999999999999999999999999999999999998883
Q ss_pred hccCceeeeeeee
Q 038826 95 KRKGQIVMPVFYN 107 (572)
Q Consensus 95 ~~~~~~v~Pify~ 107 (572)
..+..|+||..+
T Consensus 76 -~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 -KRGKPIIPVRLD 87 (102)
T ss_dssp -CTSESEEEEECS
T ss_pred -HCCCEEEEEEEC
Confidence 344589999844
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=7.5e-11 Score=124.57 Aligned_cols=283 Identities=15% Similarity=0.052 Sum_probs=168.1
Q ss_pred CCCCCCCcccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhccccc--ceEEEEeecccccccccHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMANVREESKRVELV 257 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~s~~~~~~ 257 (572)
+...++.|+||++++++|...|... ......+.|+|++|+|||++++.+++...... -..++++ .....+..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHH
Confidence 3446678999999999999988543 22345678999999999999999999775544 2345554 33344667
Q ss_pred HHHHHHHHHhhCCC-Ccc---ccchHHHHHHHhh--cCceEEEEecCCChh------hhHHHhcCCCCCC-CCcEEEEEe
Q 038826 258 HLRDQIVSQILGES-TVE---TSILPQCIKKRLQ--QMNVCIILDKVDKFG------HSEYLTGGLSRFG-HGSRVIVTT 324 (572)
Q Consensus 258 ~l~~~il~~l~~~~-~~~---~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~-~gs~IIvTT 324 (572)
.++..++.++.+.. +.. .++....+.+.+. +++.+||||+++... .+..+........ .+..+|.++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 88888888887632 211 2344555666664 356899999997642 3444443322211 122356665
Q ss_pred CCchhhhhcC-------CceEEEecCCChhhHHHHHHhhhhcC---CCC-CCchHHHHHHHHHHhCCCchhHHHHhhHh-
Q 038826 325 RDKKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQ---NHC-PGDLLVLSDNVVDYANGSSLALNVLRSSF- 392 (572)
Q Consensus 325 R~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~-~~~~~~~~~~i~~~~~GlPLal~~~g~~L- 392 (572)
....+..... ....+.+++++.++..+++..++-.. ... ++..+.+++......|..+.|+.++-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5543322211 12467899999999999998776321 111 11222233333333466778877664332
Q ss_pred ----cCC---CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccC----CCCCHHHHHHH-------Hh
Q 038826 393 ----YRK---SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF----NGEGRDYVKII-------LN 454 (572)
Q Consensus 393 ----~~~---~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp----~~~~~~~l~~~-------w~ 454 (572)
++. +.+....+++.+ -.....-.+..||.++|..+..++... .......+... ..
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 111 455555555443 123345568899999888877766432 22333333322 11
Q ss_pred hc----cchHHHHHHHhhCCceEee
Q 038826 455 NR----YLVHYGLNILAGKAIITIS 475 (572)
Q Consensus 455 ~~----~~~~~~l~~L~~~sLi~~~ 475 (572)
.. .....+++.|.+.+||...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 10 1124589999999999864
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.31 E-value=4.2e-11 Score=121.92 Aligned_cols=267 Identities=14% Similarity=0.110 Sum_probs=159.7
Q ss_pred CCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
.+|||++..++.|..++... ....+.+.++|++|+|||+||+.+++.....+. .+. .+.......+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS----GPALEKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec----cchhcCchhH-HHH
Confidence 47999999999998888632 123556889999999999999999997754432 111 0100111111 122
Q ss_pred HHHhhCCCC---c----cccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhc--C
Q 038826 264 VSQILGEST---V----ETSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY--G 334 (572)
Q Consensus 264 l~~l~~~~~---~----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~--~ 334 (572)
+..+....- + ......+.+...+.+.+..+|+++..+..++... + .+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~---~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD---L---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec---C---CCeEEEEecCCccccCHHHHhh
Confidence 222221110 0 0112233444455555666666665544433221 1 1355666777765443321 1
Q ss_pred CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcCCcCCCc--
Q 038826 335 VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPKQISD-- 412 (572)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~-- 412 (572)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+. ......+. .....
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~-----~~a~~~~~-~~it~~~ 221 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVR-----DFAQVRGQ-KIINRDI 221 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHH-----HHHHHcCC-CCcCHHH
Confidence 2346789999999999999987743322 22346778999999999977655554321 00001111 11111
Q ss_pred -ccHHHHHHHhhccCChhhHHHHh-hhcccCCC-CCHHHHHHHHhhc-cchHHHHH-HHhhCCceEee
Q 038826 413 -PDIHDMLKISYDELNYKEKDLFL-DIACFFNG-EGRDYVKIILNNR-YLVHYGLN-ILAGKAIITIS 475 (572)
Q Consensus 413 -~~v~~~l~~Sy~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~-~~~~~~l~-~L~~~sLi~~~ 475 (572)
......+...|..|++..+..+. .++.+..+ ...+.+...+... ...+..++ .|++++||...
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 12223356678889998888777 55666544 5778888888777 77788888 69999999754
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=1.1e-11 Score=120.52 Aligned_cols=194 Identities=12% Similarity=0.130 Sum_probs=101.3
Q ss_pred ccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH------HHH
Q 038826 189 LVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL------RDQ 262 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l------~~~ 262 (572)
|+||+.|+++|.+.+..+ ..+.+.|+|+.|+|||+|++++.+.....-..++|+........ .....+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999764 35689999999999999999999987554334555542211110 111111 111
Q ss_pred ----HHHHhhCCCC--------ccccchHHHHHHHhh--cCceEEEEecCCChh-----------hhHHHhcCCCCCCCC
Q 038826 263 ----IVSQILGEST--------VETSILPQCIKKRLQ--QMNVCIILDKVDKFG-----------HSEYLTGGLSRFGHG 317 (572)
Q Consensus 263 ----il~~l~~~~~--------~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~g 317 (572)
+...+..... .........+.+.+. +++++||+||+.... .+..+........ .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-N 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-C
Confidence 1111111110 112223334444443 346999999996544 1222222222222 3
Q ss_pred cEEEEEeCCchhhhh--------cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHH
Q 038826 318 SRVIVTTRDKKVLDK--------YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (572)
Q Consensus 318 s~IIvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 387 (572)
..+++++-...+... .+....+.+++|+.+++++++....-.. ...+...+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444434332 2233459999999999999998865322 11112345679999999999998864
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.29 E-value=1.9e-11 Score=125.43 Aligned_cols=269 Identities=14% Similarity=0.096 Sum_probs=160.5
Q ss_pred CCCCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
...+|+|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....+. ++. ....... .-+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HHHH
Confidence 4468999999999988877632 223567889999999999999999998765432 111 0001111 1112
Q ss_pred HHHHHhhCCCC---c-c---ccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhc-
Q 038826 262 QIVSQILGEST---V-E---TSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY- 333 (572)
Q Consensus 262 ~il~~l~~~~~---~-~---~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~- 333 (572)
.++..+....- + + .....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..|++...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHH
Confidence 22222211110 0 0 11122233344444455555555444332211 11 1345566777755443321
Q ss_pred -CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcCCcCCCc
Q 038826 334 -GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPKQISD 412 (572)
Q Consensus 334 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~ 412 (572)
.....+++++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+ ..|..... -.....
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I~~ 240 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVITK 240 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCCCH
Confidence 12346899999999999999988754322 2234678999999999996555444432 12222111 111111
Q ss_pred ---ccHHHHHHHhhccCChhhHHHHh-hhcccCCC-CCHHHHHHHHhhc-cchHHHHH-HHhhCCceEee
Q 038826 413 ---PDIHDMLKISYDELNYKEKDLFL-DIACFFNG-EGRDYVKIILNNR-YLVHYGLN-ILAGKAIITIS 475 (572)
Q Consensus 413 ---~~v~~~l~~Sy~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~-~~~~~~l~-~L~~~sLi~~~ 475 (572)
......+...+..|++..+..+. .+..|+.+ ...+.+...+... ...++.++ .|++.+||+..
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 23344556678889998888886 66677665 5788888888777 77787888 99999999754
No 13
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.20 E-value=1.1e-09 Score=119.03 Aligned_cols=292 Identities=12% Similarity=0.120 Sum_probs=188.1
Q ss_pred CCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccc-ccccHHHHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREES-KRVELVHLR 260 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s-~~~~~~~l~ 260 (572)
+|..+...|-|..-++.+... .+.|.+.|..++|.|||||+.+... ....-..+.|+. .. .+.+...+.
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHH
Confidence 344456677776655544422 2578999999999999999999988 333445688997 33 356788888
Q ss_pred HHHHHHhhCCCCcc---------------ccchHHHHHHHhh--cCceEEEEecCC---Ch---hhhHHHhcCCCCCCCC
Q 038826 261 DQIVSQILGESTVE---------------TSILPQCIKKRLQ--QMNVCIILDKVD---KF---GHSEYLTGGLSRFGHG 317 (572)
Q Consensus 261 ~~il~~l~~~~~~~---------------~~~~~~~l~~~L~--~kr~LlVLDdv~---~~---~~~~~l~~~~~~~~~g 317 (572)
..++..+..-.++. ...+...+...+. .++.++||||.. ++ ..++.++...| ++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---EN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CC
Confidence 88888887544321 1112223333332 468999999984 22 23555555444 68
Q ss_pred cEEEEEeCCchhhhhcC---CceEEEec----CCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 318 SRVIVTTRDKKVLDKYG---VDYVYKVE----GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 318 s~IIvTTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
-..|||||...-..... .+...++. .++.+|+.++|.... . .+-...-++.+.+..+|.+-|+..++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~--l~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---S--LPLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---C--CCCChHHHHHHHhhcccHHHHHHHHHH
Confidence 89999999874432211 12233443 478999999998764 1 112234578999999999999999888
Q ss_pred HhcCC-CHHHHHHHHcCCcCCCcccHH-HHHHHhhccCChhhHHHHhhhcccCCCCCHHHHHHHHhhccchHHHHHHHhh
Q 038826 391 SFYRK-SKQHWENALHNPKQISDPDIH-DMLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNNRYLVHYGLNILAG 468 (572)
Q Consensus 391 ~L~~~-~~~~w~~~l~~l~~~~~~~v~-~~l~~Sy~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~~~~~~~~l~~L~~ 468 (572)
.+++. +.+.-...+. .. ...+. -..+--++.||+++|..++-+|+++. ++ +.|..-..+.-.....+++|.+
T Consensus 236 a~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~ng~amLe~L~~ 309 (894)
T COG2909 236 ALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEENGQAMLEELER 309 (894)
T ss_pred HccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCCcHHHHHHHHHh
Confidence 88743 3332222111 11 11121 12233468999999999999999852 11 2233322222345567999999
Q ss_pred CCceEee----CCeEEecHHHHHHHHHHHhhhc
Q 038826 469 KAIITIS----NNKLQMRDLLQEMGQRVVCHES 497 (572)
Q Consensus 469 ~sLi~~~----~~~~~mHdlv~~~a~~i~~~e~ 497 (572)
++|+-.. ++.|+.|.|..||.+.-.+.+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9999854 6679999999999998876653
No 14
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=1.2e-09 Score=114.12 Aligned_cols=283 Identities=17% Similarity=0.096 Sum_probs=161.5
Q ss_pred CCCCCCCcccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhcccccc------eEEEEeeccccccc
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE------GWCFMANVREESKR 253 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~wv~~~~~~s~~ 253 (572)
+...++.++||+.++++|...|... ......+.|+|++|+|||++++.+++.+....+ ..+|++ ....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 3445568999999999999998642 223467899999999999999999986543322 245665 3344
Q ss_pred ccHHHHHHHHHHHhhC---CCCc--c-ccchHHHHHHHhh--cCceEEEEecCCChh-----hhHHHhcC--CCCC-CCC
Q 038826 254 VELVHLRDQIVSQILG---ESTV--E-TSILPQCIKKRLQ--QMNVCIILDKVDKFG-----HSEYLTGG--LSRF-GHG 317 (572)
Q Consensus 254 ~~~~~l~~~il~~l~~---~~~~--~-~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~--~~~~-~~g 317 (572)
.+...++..++.++.. ..+. . ..+....+.+.+. +++++||||+++... .+..+... .... +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 4566788888888742 1111 1 1233444555553 467899999997651 13333322 1111 123
Q ss_pred cEEEEEeCCchhhhhcC-------CceEEEecCCChhhHHHHHHhhhh---cCCCCCCchHHHHHHHHHHhCCCch-hHH
Q 038826 318 SRVIVTTRDKKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAF---RQNHCPGDLLVLSDNVVDYANGSSL-ALN 386 (572)
Q Consensus 318 s~IIvTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPL-al~ 386 (572)
..+|.+|.......... ....+.+++.+.++-.+++..++- ......++..+.+.+++....|.|- |+.
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 34455554333221111 124688999999999999988763 1111222223345556667778774 433
Q ss_pred HHhhHh-----cC---CCHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCC----CCCHHHHHHHHh
Q 038826 387 VLRSSF-----YR---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN----GEGRDYVKIILN 454 (572)
Q Consensus 387 ~~g~~L-----~~---~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~----~~~~~~l~~~w~ 454 (572)
++-... .+ -+.+....+.+.+ -.....-++..||.+.+.++..++..-+ .+....+...+.
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 332211 11 1344444443332 1233445677899988877766653221 123333333211
Q ss_pred -hc----------cchHHHHHHHhhCCceEee
Q 038826 455 -NR----------YLVHYGLNILAGKAIITIS 475 (572)
Q Consensus 455 -~~----------~~~~~~l~~L~~~sLi~~~ 475 (572)
.+ .....+++.|...|||...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 1234589999999999975
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=2.1e-09 Score=107.38 Aligned_cols=177 Identities=11% Similarity=0.077 Sum_probs=109.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-ccchHHHHHH----
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-TSILPQCIKK---- 284 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-~~~~~~~l~~---- 284 (572)
...+.|+|++|+|||||++.+++.....--..+|+. ....+..+++..++..++...... .......+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999987653211233443 223456677888887765543211 1112222322
Q ss_pred H-hhcCceEEEEecCCChh--hhHHHh---cCCCCCCCCcEEEEEeCCchhhhhc----------CCceEEEecCCChhh
Q 038826 285 R-LQQMNVCIILDKVDKFG--HSEYLT---GGLSRFGHGSRVIVTTRDKKVLDKY----------GVDYVYKVEGFNYRE 348 (572)
Q Consensus 285 ~-L~~kr~LlVLDdv~~~~--~~~~l~---~~~~~~~~gs~IIvTTR~~~v~~~~----------~~~~~~~l~~L~~~e 348 (572)
. ..+++.+||+||++... .++.+. ...........|++|.... ..... .....+++++|+.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 25678999999998653 344433 2211112233455655432 11111 123467899999999
Q ss_pred HHHHHHhhhhcCC--CCCCchHHHHHHHHHHhCCCchhHHHHhhHh
Q 038826 349 SLEIFCYYAFRQN--HCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (572)
Q Consensus 349 a~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 392 (572)
..+++...+.... ....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887653322 1122235788999999999999999998876
No 16
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=6e-10 Score=102.27 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=84.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccccc------ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHH
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQF------EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKK 284 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~ 284 (572)
|++.|+|.+|+||||+++.++..+.... ...+|+. .+..........+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAP----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhh----hHHHHHH
Confidence 5789999999999999999998654432 3445554 222222222223444443333222111 1112222
Q ss_pred H-hhcCceEEEEecCCChhh-------------hHHHhcCCCCCCCCcEEEEEeCCchh---hhhcCCceEEEecCCChh
Q 038826 285 R-LQQMNVCIILDKVDKFGH-------------SEYLTGGLSRFGHGSRVIVTTRDKKV---LDKYGVDYVYKVEGFNYR 347 (572)
Q Consensus 285 ~-L~~kr~LlVLDdv~~~~~-------------~~~l~~~~~~~~~gs~IIvTTR~~~v---~~~~~~~~~~~l~~L~~~ 347 (572)
. ...++++||+|++++... +..+... ...+++++|||||.... .........+++.+|+++
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 2 256899999999975432 2222222 12468999999998766 223334468999999999
Q ss_pred hHHHHHHhh
Q 038826 348 ESLEIFCYY 356 (572)
Q Consensus 348 ea~~Lf~~~ 356 (572)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999998765
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=7.4e-11 Score=118.84 Aligned_cols=279 Identities=14% Similarity=0.162 Sum_probs=188.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
..|.+.++|.|||||||++-.+.+ +...|...+|+.+...++++.-+..+... .++-..- ..+.....+..+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag---~~gl~~~-~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAG---ALGLHVQ-PGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHh---hcccccc-cchHHHHHHHHHHhh
Confidence 468999999999999999999999 88889888877766665544333322222 2222111 023345567777888
Q ss_pred CceEEEEecCCChh-hhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEecCCChh-hHHHHHHhhhhcCC---CC
Q 038826 289 MNVCIILDKVDKFG-HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYR-ESLEIFCYYAFRQN---HC 363 (572)
Q Consensus 289 kr~LlVLDdv~~~~-~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~---~~ 363 (572)
++.++|+||..... +...+...+....+.-.|+.|+|...... ....+.+++|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999986542 22222222222334556888999664432 3456778888865 79999987764322 12
Q ss_pred CCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcC----CcCC------CcccHHHHHHHhhccCChhhHHH
Q 038826 364 PGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHN----PKQI------SDPDIHDMLKISYDELNYKEKDL 433 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~v~~~l~~Sy~~L~~~~k~~ 433 (572)
.......+.+|.+...|.||+|..+++..+.....+-...|+. +... ........+.+||.-|..-++-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 3344567889999999999999999999988766655444443 2222 12457788999999999999999
Q ss_pred HhhhcccCCCCCHHHHHHHH-hh----c-cchHHHHHHHhhCCceEee----CCeEEecHHHHHHHHHHHhh
Q 038826 434 FLDIACFFNGEGRDYVKIIL-NN----R-YLVHYGLNILAGKAIITIS----NNKLQMRDLLQEMGQRVVCH 495 (572)
Q Consensus 434 fl~la~fp~~~~~~~l~~~w-~~----~-~~~~~~l~~L~~~sLi~~~----~~~~~mHdlv~~~a~~i~~~ 495 (572)
|..++.|...+..+.....- .+ . +.....+..|+++|++... .-+|+.-+-++.++..+..+
T Consensus 245 ~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 245 FGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888655222211 11 2 3455678899999999865 22366667777777666544
No 18
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=124.58 Aligned_cols=301 Identities=12% Similarity=0.147 Sum_probs=179.5
Q ss_pred CccccccccccccccccccCC-CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeec----ccccccccHHHHHHH
Q 038826 188 DLVGLDSHIQRNNSLLCVRLP-DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANV----REESKRVELVHLRDQ 262 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~----~~~s~~~~~~~l~~~ 262 (572)
.++||+.+++.|...+..-.. ...++.+.|..|||||+|+++|...+...+. .++... .....-..+.+..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHH
Confidence 379999999999999886543 3679999999999999999999996655411 111100 000111122233333
Q ss_pred HHHHh-------------------hCCCC--------------------ccccc---------hHHHHHHHh-hcCceEE
Q 038826 263 IVSQI-------------------LGEST--------------------VETSI---------LPQCIKKRL-QQMNVCI 293 (572)
Q Consensus 263 il~~l-------------------~~~~~--------------------~~~~~---------~~~~l~~~L-~~kr~Ll 293 (572)
++.++ +.... +.... ....+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33332 11111 00000 111122222 3469999
Q ss_pred EEecC-C-Chhh---hHHHhcCCC--CC-CCCcEEEEEeCCc--hhhhhcCCceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 294 ILDKV-D-KFGH---SEYLTGGLS--RF-GHGSRVIVTTRDK--KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 294 VLDdv-~-~~~~---~~~l~~~~~--~~-~~gs~IIvTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
|+||+ | |... ++.++.... .. .+..-.+.|.+.. .+.......+.+.+.||+..+...|..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 99999 4 2222 333333322 00 0011122233322 11222224468999999999999998776522122
Q ss_pred CCchHHHHHHHHHHhCCCchhHHHHhhHhcCC-------CHHHHHHHHcCCcCCCc-ccHHHHHHHhhccCChhhHHHHh
Q 038826 364 PGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-------SKQHWENALHNPKQISD-PDIHDMLKISYDELNYKEKDLFL 435 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~v~~~l~~Sy~~L~~~~k~~fl 435 (572)
...+....|+++..|+|+.+..+-..|... +...|..-..++..... +.+-+.+..-.+.||...|..+.
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 234568899999999999999988888542 23345444333333221 33666788899999999999999
Q ss_pred hhcccCCCCCHHHHHHHHhhc--cchHHHHHHHhhCCceEee--------CCeE---EecHHHHHHHHHHH
Q 038826 436 DIACFFNGEGRDYVKIILNNR--YLVHYGLNILAGKAIITIS--------NNKL---QMRDLLQEMGQRVV 493 (572)
Q Consensus 436 ~la~fp~~~~~~~l~~~w~~~--~~~~~~l~~L~~~sLi~~~--------~~~~---~mHdlv~~~a~~i~ 493 (572)
..||+...++.+.|..++... ..+...++.|....++-.. .... -.||++|+.|-...
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 999999999999999998854 3444445555544444311 1112 57888888776554
No 19
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.80 E-value=3.1e-08 Score=99.94 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=104.9
Q ss_pred CCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCccc--------
Q 038826 9 SPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYAS-------- 79 (572)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~-------- 79 (572)
...+.|||||||+. +....++-|.-.|+-+|++||+|- .+..|. +.+.+.+.|..++.+|.|+|||.++
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 35679999999987 455699999899999999999998 777775 5689999999999999999999754
Q ss_pred chhhHHHHHHHHHhhhccCceeeeeeeecCCCcccCCCCchHHHHHHhhhhcCCChhhHhhHHHHHHhhhhhcccccccc
Q 038826 80 STWCLHELVKILECKKRKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDTPQKVHKWRAALTQASNLCGWDSMKI 159 (572)
Q Consensus 80 s~~c~~El~~~~~~~~~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 159 (572)
-.|...|+..+++|+++ |+|||-. +|.- .. +-....+-+..+...+|... ..
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~---------------aFE~-----Pt---~ed~iPnDirmi~kyNGvKW-vH 738 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT---------------AFEF-----PT---KEDQIPNDIRMITKYNGVKW-VH 738 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc---------------cccC-----CC---chhcCcHHHHHHHhccCeee-eh
Confidence 35888899999988853 9999843 1110 00 00011122344555667555 44
Q ss_pred cchHHHHHHHHHhhhhhccCCCCC
Q 038826 160 RTEAELVDEIVKDILKKIHDIPHL 183 (572)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~~ 183 (572)
+.+..-+.+++.-+...+++.+|.
T Consensus 739 dYQdA~maKvvRFitGe~nRttpt 762 (832)
T KOG3678|consen 739 DYQDACMAKVVRFITGELNRTTPT 762 (832)
T ss_pred hhHHHHHHHHHHHHhccccCCCCC
Confidence 566777888888888888744443
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=5e-08 Score=98.05 Aligned_cols=167 Identities=16% Similarity=0.237 Sum_probs=102.1
Q ss_pred CCccccccccc---cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQ---RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
.++||-+.-+. -|..++..+ .+.-..+||++|+||||||+.++......|...-=+ ..++.++.. +
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~-i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLRE-I 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHH-H
Confidence 45666554442 233333322 466677999999999999999999877776542211 122333221 1
Q ss_pred HHHhhCCCCccccchHHHH-HHHhhcCceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEE--EeCCchhhhh---cCC
Q 038826 264 VSQILGESTVETSILPQCI-KKRLQQMNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIV--TTRDKKVLDK---YGV 335 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIv--TTR~~~v~~~---~~~ 335 (572)
+ +.- +....+++.+|.+|.|. +..+-+.|++.+. .|.-|+| ||-|+...-. ...
T Consensus 93 ~---------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 I---------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred H---------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhh
Confidence 1 111 22345889999999995 5566677777665 5776776 6766644211 123
Q ss_pred ceEEEecCCChhhHHHHHHhhhhcCCCC-----CCchHHHHHHHHHHhCCCc
Q 038826 336 DYVYKVEGFNYRESLEIFCYYAFRQNHC-----PGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-----~~~~~~~~~~i~~~~~GlP 382 (572)
..++.+++|+.++-.+++.+-+...... ..-.++....++..++|=-
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 4689999999999999998833221111 1112345667777777743
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=5.9e-08 Score=102.82 Aligned_cols=176 Identities=13% Similarity=0.197 Sum_probs=106.9
Q ss_pred CCCcccccccccc---ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHH
Q 038826 186 SEDLVGLDSHIQR---NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 186 ~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
.+++||.+..+.. +..++... ....+.|+|++|+||||||+.+++.....|.. +. .+ ..+... .+.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~----a~-~~~~~~-ir~ 79 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS----AV-TSGVKD-LRE 79 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee----cc-cccHHH-HHH
Confidence 3579999888777 77777543 45578899999999999999999976554422 21 00 011111 112
Q ss_pred HHHHhhCCCCccccchHHHHHH-HhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE--EeCCchhh--h-hcC
Q 038826 263 IVSQILGESTVETSILPQCIKK-RLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV--TTRDKKVL--D-KYG 334 (572)
Q Consensus 263 il~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv--TTR~~~v~--~-~~~ 334 (572)
++.. ... ...+++.+|++|+++.. .+.+.|+..+. .|..++| ||.+.... . ...
T Consensus 80 ii~~---------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 80 VIEE---------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHH---------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 2111 111 12457889999999754 45556665554 3444544 34443211 1 111
Q ss_pred CceEEEecCCChhhHHHHHHhhhhcCCCCC-CchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 335 VDYVYKVEGFNYRESLEIFCYYAFRQNHCP-GDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
....+.+.+++.++..+++.+.+....... .-..+....+++.|+|.|..+..+..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 226789999999999999987643211111 22346678899999999877654433
No 22
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=3e-08 Score=96.31 Aligned_cols=151 Identities=10% Similarity=0.125 Sum_probs=92.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+.+.|+|.+|+|||+||+.+++....+...+.|+. .... ...... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~-------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA-------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH-------------------HHhhcc-c
Confidence 356899999999999999999998655555667776 2110 000001 111121 2
Q ss_pred ceEEEEecCCCh---hhhHH-HhcCCCCC-CCCcEEEE-EeCC---------chhhhhcCCceEEEecCCChhhHHHHHH
Q 038826 290 NVCIILDKVDKF---GHSEY-LTGGLSRF-GHGSRVIV-TTRD---------KKVLDKYGVDYVYKVEGFNYRESLEIFC 354 (572)
Q Consensus 290 r~LlVLDdv~~~---~~~~~-l~~~~~~~-~~gs~IIv-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (572)
.-+||+||++.. ..|+. +...++.. ..|..+|| |+.. +.+...++....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 348999999853 23332 22212111 23555655 4443 3445555556689999999999999999
Q ss_pred hhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 355 YYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
+.+....- .-.++...-|++.+.|-.-++..+-
T Consensus 172 ~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 98864432 2234667788888887666654433
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=1.7e-07 Score=90.98 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=100.8
Q ss_pred CCccc--cccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVG--LDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vG--R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
++|++ -+..++.+.+++.. ...+.|.|+|.+|+|||+||+.+++.........+++. .+.-. .-...++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~----~~~~~---~~~~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP----LAELA---QADPEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe----HHHHH---HhHHHHH
Confidence 45653 22345566665432 23568999999999999999999987554444456665 21110 0000111
Q ss_pred HHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh---h-hHHHhcCCCC-CCCCcEEEEEeCCch---------hh
Q 038826 265 SQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG---H-SEYLTGGLSR-FGHGSRVIVTTRDKK---------VL 330 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIvTTR~~~---------v~ 330 (572)
..+.+ .-+||+||++... . .+.+...+.. ...+..+|+||+... +.
T Consensus 86 -------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 86 -------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred -------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 11122 2389999996432 1 2233322211 123457889887532 11
Q ss_pred hhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhH
Q 038826 331 DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSS 391 (572)
Q Consensus 331 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 391 (572)
..+.....+++++++.++...++...+-.... .-..+....+++.++|.|..+..+...
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 22222357899999999999998775432221 122456678888899999887766443
No 24
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=1.5e-07 Score=82.60 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=77.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
+++.|.|+.|+|||||+++++++.. .-..+++++ ...... ..... .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~~-~~~~~-------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPRD-RRLAD-------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHHH-HHHhh-------------hh-hHHHHHHhhccCC
Confidence 6899999999999999999998755 334556665 211111 00000 00 2223333333477
Q ss_pred eEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhh------cCCceEEEecCCChhh
Q 038826 291 VCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK------YGVDYVYKVEGFNYRE 348 (572)
Q Consensus 291 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~------~~~~~~~~l~~L~~~e 348 (572)
.+|+||++.....|......+-...++.+|++|+.+...... .|....+++.||+..|
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 899999998888877776655544567899999987766532 1223467899998776
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.55 E-value=8.5e-07 Score=97.63 Aligned_cols=204 Identities=11% Similarity=0.043 Sum_probs=114.9
Q ss_pred CCCCCCCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccc-----cc--eEEEEeeccccc
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----FE--GWCFMANVREES 251 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~wv~~~~~~s 251 (572)
+...++.+.|||+|+++|...|... .....++.|+|.+|.|||++++.+.+++... .+ .+++|. ..
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GM 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CC
Confidence 3445678999999999999888642 2223567899999999999999998865322 22 245565 33
Q ss_pred ccccHHHHHHHHHHHhhCCCCcc---ccchHHHHHHHhh---cCceEEEEecCCChh-----hhHHHhcCCCCCCCCcEE
Q 038826 252 KRVELVHLRDQIVSQILGESTVE---TSILPQCIKKRLQ---QMNVCIILDKVDKFG-----HSEYLTGGLSRFGHGSRV 320 (572)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~---~~~~~~~l~~~L~---~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~I 320 (572)
.-.....++..|..++.+..+.. .......+...+. ....+||||+++... .+-.|..... ..+++|
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKL 903 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKL 903 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeE
Confidence 33456677777777775544421 1122333333331 224589999997432 1222222111 134555
Q ss_pred EE--EeCCc--------hhhhhcCCceEEEecCCChhhHHHHHHhhhhcCCC--CCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 321 IV--TTRDK--------KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH--CPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 321 Iv--TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
+| .|..- .+...++. ..+..+|.+.++-.+++..++-.... .+..++-+|+.++...|..=.||.++
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 44 33221 12222222 23566899999999999988743211 11122233344444445556666655
Q ss_pred hhHh
Q 038826 389 RSSF 392 (572)
Q Consensus 389 g~~L 392 (572)
-...
T Consensus 983 RrAg 986 (1164)
T PTZ00112 983 RKAF 986 (1164)
T ss_pred HHHH
Confidence 4443
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.3e-06 Score=95.62 Aligned_cols=180 Identities=11% Similarity=0.045 Sum_probs=108.7
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv 244 (572)
..++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... |...+++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 3579999999999998887552 24567799999999999999998865321 1111222
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIv 322 (572)
+ .+...++..+ +.++.... ..-..++.-++|||+++... .++.|+..+.......++|+
T Consensus 94 D----Aas~rgVDdI-ReLIe~a~--------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 94 D----AASNRGVDEM-AALLERAV--------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred c----ccccccHHHH-HHHHHHHH--------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 1 1111111111 11111100 00012345688999997553 46667666555456778888
Q ss_pred EeCCchh-hhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc-hhHHH
Q 038826 323 TTRDKKV-LDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNV 387 (572)
Q Consensus 323 TTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 387 (572)
||.+..- .... .....+.++.++.++..+.+.+.+-.... .-..+....|++.++|.. -||..
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7776533 2221 12357899999999999999877633221 223456788889998854 45554
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=5.1e-07 Score=79.42 Aligned_cols=111 Identities=13% Similarity=0.182 Sum_probs=76.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-----cceEEEEeecccccccccHHHHHHHHHHHhhCCCCc-c-ccchHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-----FEGWCFMANVREESKRVELVHLRDQIVSQILGESTV-E-TSILPQCI 282 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~-~-~~~~~~~l 282 (572)
.+.+.|+|.+|+|||++++.+++..... -..++|+. .....+...+...++..+...... . ...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4689999999999999999999976543 34566887 555568899999999999877653 2 45555677
Q ss_pred HHHhhcCc-eEEEEecCCCh---hhhHHHhcCCCCCCCCcEEEEEeCC
Q 038826 283 KKRLQQMN-VCIILDKVDKF---GHSEYLTGGLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 283 ~~~L~~kr-~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIvTTR~ 326 (572)
.+.+...+ .+||+|+++.. ..++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77776655 59999999654 33444443333 567778877664
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=1.4e-06 Score=89.86 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=104.5
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-c-eEEEEeecccccccc--cHHHHH--
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-E-GWCFMANVREESKRV--ELVHLR-- 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~wv~~~~~~s~~~--~~~~l~-- 260 (572)
.+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+.... . ..+.++ .+... ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~----~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN----VADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec----hhhhhhcchhhhhcC
Confidence 57899999999998888654 344688999999999999999998764332 2 223443 11100 000000
Q ss_pred HHHHHHhhCC--CCcc-ccchHHHHHHHh-----hcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEEEEeCCc-hh
Q 038826 261 DQIVSQILGE--STVE-TSILPQCIKKRL-----QQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDK-KV 329 (572)
Q Consensus 261 ~~il~~l~~~--~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIvTTR~~-~v 329 (572)
......+... .... .+.....++... ...+-+||+||++... ....+...+......+++|+||.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 0000000000 0000 011111111111 1334589999997542 2333433333333457788777543 22
Q ss_pred hhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 330 LDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
.... .....+++.+++.++..+.+...+-..... -..+....+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2221 123568889999999988888765432221 234567888888888765543
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=4.9e-07 Score=80.52 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=69.0
Q ss_pred cccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhC
Q 038826 190 VGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILG 269 (572)
Q Consensus 190 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~ 269 (572)
+|++..++.+...+... ..+.+.|+|.+|+|||+|++.+++.....-..++++. .............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN----ASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe----hhhhhhhhHHHHHhhhh---
Confidence 36777777777777643 3467889999999999999999997653334455554 22111111111000000
Q ss_pred CCCccccchHHHHHHHhhcCceEEEEecCCCh-----hhhHHHhcCCCCC---CCCcEEEEEeCCch
Q 038826 270 ESTVETSILPQCIKKRLQQMNVCIILDKVDKF-----GHSEYLTGGLSRF---GHGSRVIVTTRDKK 328 (572)
Q Consensus 270 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gs~IIvTTR~~~ 328 (572)
............++.+||+||++.. ..+..+....... ..+..||+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999853 2233333332221 35788888887653
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.48 E-value=3.8e-07 Score=95.11 Aligned_cols=173 Identities=21% Similarity=0.239 Sum_probs=99.2
Q ss_pred CCCccccccccccccccccccC-----------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRL-----------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV 254 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~ 254 (572)
...+.|+++.++++.+.+...- ...+-+.|+|++|+|||+||+++++.....|-.+ ..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---------~~-- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---------VG-- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---------ch--
Confidence 3467888888888877654211 1245689999999999999999999876554221 10
Q ss_pred cHHHHHHHHHHHhhCCCCccccchHHHHHHH-hhcCceEEEEecCCChh----------------hhHHHhcCCCCC--C
Q 038826 255 ELVHLRDQIVSQILGESTVETSILPQCIKKR-LQQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--G 315 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 315 (572)
..+..... +. .......+.+. -...+.+|+||+++... .+..++..+... .
T Consensus 190 --~~l~~~~~----g~----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 --SELVRKYI----GE----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred --HHHHHHhh----hH----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 01111110 00 00111111112 23467899999996431 122333222211 2
Q ss_pred CCcEEEEEeCCchh-----hhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 316 HGSRVIVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 316 ~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
.+..||.||..... ......+..+.++..+.++..++|..++.+..... +. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cC--CHHHHHHHcCCCC
Confidence 46678888875432 22122456889999999999999998874433221 11 1356777777764
No 31
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=7.3e-07 Score=91.40 Aligned_cols=164 Identities=9% Similarity=-0.015 Sum_probs=102.0
Q ss_pred CCCCCCCccccccccccccccccccCC-CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVRLP-DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
.|.+...|+||+.++..|...|...+. ..+++.|+|++|+|||||++.+..... ...++.|. . +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp----r--g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV----R--GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC----C--CHHHHH
Confidence 466778999999999999999975432 356899999999999999999997654 22444422 2 678999
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHh-----h-cCceEEEEecC--CChhh-hHHHhcCCCCCCCCcEEEEEeCCchhhh
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRL-----Q-QMNVCIILDKV--DKFGH-SEYLTGGLSRFGHGSRVIVTTRDKKVLD 331 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVLDdv--~~~~~-~~~l~~~~~~~~~gs~IIvTTR~~~v~~ 331 (572)
..++..++.+......++...+.+.+ . +++.+||+-=- .+..- ..+. ..+.+...-|+|++---.+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 99999998643322223333333332 2 56666665422 22111 1111 11222234678887655443322
Q ss_pred hc---CCceEEEecCCChhhHHHHHHhh
Q 038826 332 KY---GVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 332 ~~---~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
.. ..-..|.+++++.++|.+.-...
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 12247889999999998765443
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.7e-06 Score=91.62 Aligned_cols=190 Identities=13% Similarity=0.001 Sum_probs=108.5
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc--ccceEEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS--QFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
++++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...||.+.. . ..+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s----c-~~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES----C-LAVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh----h-HHHhcCCCCce
Confidence 468998888888877776542 2456799999999999999999986532 23334444310 0 00000000000
Q ss_pred HHhhCCCCccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeC-Cchhhhhc-CC
Q 038826 265 SQILGESTVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTR-DKKVLDKY-GV 335 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR-~~~v~~~~-~~ 335 (572)
..+..... ..-...+.+.+.+ .+++-++|+|+++.. ..++.|+..+......+.+|++|. ...+.... ..
T Consensus 88 ~el~~~~~-~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 88 LEIDAASN-NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred EEeccccc-CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00000000 0000111122222 245669999999744 446667666654445555555554 33332222 12
Q ss_pred ceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 336 DYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
...+++.+++.++..+.+.+.+-..+.. -..+.+..|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3578999999999999998876433321 23456788999999988544
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.8e-06 Score=88.39 Aligned_cols=179 Identities=14% Similarity=0.102 Sum_probs=107.1
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc---------------------ceEEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF---------------------EGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~w 243 (572)
.-.+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.+.... ....+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 34578999999998888886542 245678999999999999999998653211 11111
Q ss_pred EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEE
Q 038826 244 MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 244 v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~II 321 (572)
+. .+....+.. .+.++..+... -..+++-++|+|+++... .++.++..+.......++|
T Consensus 93 ~~----~~~~~~v~~-ir~i~~~~~~~--------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 93 ID----AASRTKVEE-MREILDNIYYS--------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred ec----ccccCCHHH-HHHHHHHHhcC--------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11 000011111 11111111000 012345699999997554 4666666655545566777
Q ss_pred EEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 322 VTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 322 vTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
++|.+. .+.... +....+++.+++.++..+.+...+-..+. .-..+.+..|++.++|.|-.+
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 766543 333221 12357899999999999888776533221 122356778899999987643
No 34
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=2e-07 Score=87.21 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=35.1
Q ss_pred Cccccccccccccccccc-cCCCceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 188 DLVGLDSHIQRNNSLLCV-RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.||||+++++++...|.. .....+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 22347899999999999999999999977666
No 35
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=5.7e-06 Score=85.64 Aligned_cols=198 Identities=12% Similarity=-0.039 Sum_probs=109.6
Q ss_pred CCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-c-cceEEEEeecccccccccHHHHH
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-Q-FEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
|....+++|-+...+.+.+.+..+. -...+.++|+.|+||||+|..+++.+-. . ........... .....+.....
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChHH
Confidence 3445689999998888888887652 2456889999999999999999985421 1 00000000000 00000000111
Q ss_pred HHHHHHhhC-----------CC----CccccchHHHHHHHh-----hcCceEEEEecCCC--hhhhHHHhcCCCCCCCCc
Q 038826 261 DQIVSQILG-----------ES----TVETSILPQCIKKRL-----QQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGS 318 (572)
Q Consensus 261 ~~il~~l~~-----------~~----~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs 318 (572)
+.+...... .. ..+.-+.++.+.+.+ .+.+-++|+|+++. ......|+..+.....++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111110000 00 001001122333333 24567999999964 344555655554444567
Q ss_pred EEEEEeCCch-hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 319 RVIVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 319 ~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
.+|++|.+.. +.... .....+.+.+++.++..+++..... .. ..+....++..++|.|+....+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~---~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DL---PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 7777776653 32221 1235889999999999999987531 11 1122367899999999865444
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.2e-06 Score=95.72 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=109.3
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-c--------------------ceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-F--------------------EGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f--------------------~~~~wv 244 (572)
..++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... . ..++++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3579999999998888886542 24456899999999999999999975432 1 011111
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHH-HHhhcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIK-KRLQQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~II 321 (572)
. .+....+.. .+.+... +. .-..+++-++|+|++.. .+..+.|+..+.......++|
T Consensus 94 d----Aas~~kVDd-IReLie~---------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 94 D----AASRTKVDD-TRELLDN---------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred c----cccccCHHH-HHHHHHH---------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1 000011111 1122111 11 11245677999999964 455677776665544566666
Q ss_pred EEeCC-chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 322 VTTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 322 vTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
++|.+ ..+.... .....|++++|+.++..+.+.+.+-... ..-..+.+..|++.++|.|--+.
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 65544 4443221 1236899999999999988887653221 22234567889999999885433
No 37
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.9e-06 Score=93.22 Aligned_cols=193 Identities=9% Similarity=-0.015 Sum_probs=108.1
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-ceEEEEeecccccccccHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-EGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-..- +..--+ .+...+.-.....|.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACTEID 88 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHHHHH
Confidence 3579999999999988887553 245678999999999999999998653210 000000 000000011111111
Q ss_pred HHhhCCCCcc---ccchHHHHHH---H-----hhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe-CCchhh
Q 038826 265 SQILGESTVE---TSILPQCIKK---R-----LQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKKVL 330 (572)
Q Consensus 265 ~~l~~~~~~~---~~~~~~~l~~---~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT-R~~~v~ 330 (572)
..-......+ ....++.+++ . ..++.-++|+|+++.. ...+.|+..+.....++++|++| ....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0000000000 0011111111 1 1345669999999744 45777777666545566655554 444443
Q ss_pred hhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 331 DKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 331 ~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
.... ....+.++.++.++..+.+.+.+-.... ....+..+.|++.++|.|.-..
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 2221 2257899999999999888876532221 1223456788999999886443
No 38
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.40 E-value=1.6e-06 Score=84.23 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=95.6
Q ss_pred CCCcc-cccccc-ccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLV-GLDSHI-QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~v-GR~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
.++|+ |...+. ..+.++.. .....+.+.|+|..|+|||+||..+++.....-....+++ ... +...+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~------~~~~~ 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS------PLLAF 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH------hHHHH
Confidence 34555 544333 33333333 1223467889999999999999999986533323345554 111 00000
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCC-CCCc-EEEEEeCCchhhh--------
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRF-GHGS-RVIVTTRDKKVLD-------- 331 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs-~IIvTTR~~~v~~-------- 331 (572)
.. ....-+||+||++... ..+.+...+... ..+. .+|+|++......
T Consensus 86 --------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 00 1123478999996432 222232222111 1233 4666666432211
Q ss_pred hcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHh
Q 038826 332 KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (572)
Q Consensus 332 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 392 (572)
.+.....+++++++.++-..++.+.+-... ..-.++....+++.+.|.+..+..+-..|
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222236889999999887777765442222 22234677888889999999887666654
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.5e-06 Score=91.02 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=107.2
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~w 243 (572)
...+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+... |...++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 34578999998888888886542 24567899999999999999999854321 112222
Q ss_pred EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHH-HhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEE
Q 038826 244 MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKK-RLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRV 320 (572)
Q Consensus 244 v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (572)
+. .....++.++ +.++. .+.. -..+++-++|+|+++.. ...+.|+..+......+.+
T Consensus 93 id----aas~~gvd~i-r~ii~---------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 93 ID----AASRTGVEET-KEILD---------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred ee----cccccCHHHH-HHHHH---------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22 1111111111 11111 1111 12356679999999743 4566666666554456656
Q ss_pred EE-EeCCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 321 IV-TTRDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 321 Iv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
|+ ||....+.... .....+++.+++.++..+.+.+.+-..+ ..-..+....|++.++|-+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 64 54433333221 1236889999999998877776543222 12234556788889998654 44444
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=4.6e-06 Score=85.12 Aligned_cols=175 Identities=12% Similarity=0.118 Sum_probs=108.2
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc------cccceEEEEeecccccccccHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS------SQFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
.+++|-+...+.+.+.+..+. -.....++|+.|+||||+|+.+++.+- .+.+...|... ......+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHHH-
Confidence 357787777788888776442 245778999999999999999998542 23343334320 0112222222
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEEEeCCchhh-hhc-CCc
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DKY-GVD 336 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~-~~~-~~~ 336 (572)
+.+...+.... ..+++-++|+|+++ +...++.|+..+....+++.+|++|.+.... ... ...
T Consensus 79 r~~~~~~~~~p--------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 79 RNIIEEVNKKP--------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHHHhcCc--------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 22222221110 12345566777764 5566788887777767789998888765432 111 123
Q ss_pred eEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 337 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
..+++.+++.++....+.+.. .. ...+.+..++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKY-ND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHh-cC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 688999999999988776543 11 113446788999999887554
No 41
>PRK04195 replication factor C large subunit; Provisional
Probab=98.36 E-value=2.2e-06 Score=92.73 Aligned_cols=177 Identities=12% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCCccccccccccccccccccC--CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRL--PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
-.+++|.+..++.+..|+.... ...+.+.|+|++|+||||+|+.+++.+. |+. +-++ .+..... .....+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~~-~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRTA-DVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----ccccccH-HHHHHH
Confidence 3579999999999999986432 1267899999999999999999999864 322 2222 2222211 222222
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh------hhHHHhcCCCCCCCCcEEEEEeCCch-hhh-hc-C
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG------HSEYLTGGLSRFGHGSRVIVTTRDKK-VLD-KY-G 334 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~-~~-~ 334 (572)
+........ ....++-+||+|+++... .+..+...+. ..++.||+|+.+.. ... .. .
T Consensus 85 i~~~~~~~s------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 85 AGEAATSGS------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HHHhhccCc------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhc
Confidence 222111100 011367799999997542 2444444333 13345666664321 111 11 1
Q ss_pred CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 335 VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
....+++.+++.++....+...+...... -..+....|++.++|-.-.+.
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33578899999999988888766433321 224667888888888655543
No 42
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.1e-06 Score=91.80 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=107.6
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc---------------------ceEEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF---------------------EGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~w 243 (572)
...++||.+...+.|.+++..+. -...+.++|..|+||||+|+.+++.+-... ...+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 34589999999999998887553 246789999999999999999998653211 11112
Q ss_pred EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE
Q 038826 244 MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 244 v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (572)
+. .+...++..+ +.++.... ..-..+++-++|+|+++.. ...+.|+..+.....+.++|
T Consensus 92 ID----AAs~~~VddI-Reli~~~~--------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 92 ID----AASRTKVEDT-RELLDNVP--------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred ec----ccccCCHHHH-HHHHHHHh--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 21 1111111111 11111100 0011356678999999744 45566665555444566777
Q ss_pred EEeCCch-hhhh-cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 322 VTTRDKK-VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 322 vTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
++|.+.. +... ......+++.+++.++..+.+.+.+-..+. .-..+....|++.++|-+-.+
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 7776532 2211 122367899999999999888876633221 223456778888888876443
No 43
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=2.3e-06 Score=87.50 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=101.8
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc-ccccce-EEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI-SSQFEG-WCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~-~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
.+++|.+..++.|..++..+ ..+-+.++|++|+||||+|..+++.+ ...|.. .+-+. .+...+... .+.++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~-vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDV-VRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHH-HHHHH
Confidence 57889888888877776643 34457799999999999999999875 333332 11122 222222222 22222
Q ss_pred HHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEE
Q 038826 265 SQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYK 340 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~ 340 (572)
......... .-.++.-++|+|+++.. ...+.|...+...+..+++|+++... .+.... .....++
T Consensus 86 ~~~~~~~~~-----------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 86 KMFAQKKVT-----------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHHHhcccc-----------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 221110000 00134669999999754 23344443333334567777766432 222111 1124788
Q ss_pred ecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 341 VEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 341 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+++++.++..+.+...+-..+.. -..+....|++.++|-.-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 99999999988888776432221 1245677888888876533
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=2.1e-06 Score=81.01 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=97.2
Q ss_pred CCCCCccccccccccccccccc---cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHH
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCV---RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..-++|||-+..++.+.-++.. ..+...-+.+||++|+||||||.-+++.....|. +... .......++..+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k~~dl~~i- 95 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEKAGDLAAI- 95 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--SCHHHHHH-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhhHHHHHHH-
Confidence 3457899999988877655542 2234677899999999999999999998887764 2221 001111122221
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCC--hhhhHHHhcCCCCC--------C-----------CCcE
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDK--FGHSEYLTGGLSRF--------G-----------HGSR 319 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~--------~-----------~gs~ 319 (572)
+.. + +++-+|.+|.+.. ..+-+.|.+.+..+ + +-+-
T Consensus 96 ---l~~-------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 96 ---LTN-------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---HHT----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---HHh-------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111 1 1344666787743 23333333222111 1 1233
Q ss_pred EEEEeCCchhhhhcC--CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhc
Q 038826 320 VIVTTRDKKVLDKYG--VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFY 393 (572)
Q Consensus 320 IIvTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~ 393 (572)
|=.|||...+..... ..-+.+++..+.+|-.++..+.+..-. .+-.++.+.+|++.|.|-|--..-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 456888765543332 234568999999999999987763222 223457899999999999976555444443
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.35 E-value=2e-06 Score=96.25 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=95.9
Q ss_pred CCccccccccc---cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQ---RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
++|+|.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++.....|. .+. .+ ..++..+ +.+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln----a~-~~~i~di-r~~ 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN----AV-LAGVKDL-RAE 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh----hh-hhhhHHH-HHH
Confidence 57899888775 355555433 4556789999999999999999997765542 122 10 0111111 111
Q ss_pred HHHhhCCCCccccchHHHHHHHh--hcCceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEEE--eCCch--hhhhc-C
Q 038826 264 VSQILGESTVETSILPQCIKKRL--QQMNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIVT--TRDKK--VLDKY-G 334 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIvT--TR~~~--v~~~~-~ 334 (572)
+ ....+.+ .+++.+|||||++ +..+.+.|+..+. .|..++|+ |.+.. +.... .
T Consensus 97 i---------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 V---------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred H---------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhc
Confidence 1 1111111 2456799999996 4455666665443 35555553 44431 11111 1
Q ss_pred CceEEEecCCChhhHHHHHHhhhhc-----CCCCCCchHHHHHHHHHHhCCCc
Q 038826 335 VDYVYKVEGFNYRESLEIFCYYAFR-----QNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
....+.+++|+.++...++.+.+-. +.....-..+....|++.+.|..
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 2357899999999999998876531 01111222455677777777753
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=3.2e-06 Score=82.29 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=86.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
..+.|+|.+|+|||+|+.++++....+...+.|+. ..+ ....+. ..+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~~------~~~~~~---------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQA------AAGRLR---------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HHH------hhhhHH---------------HHH-HHH-hcC
Confidence 46999999999999999999987655544566776 211 111111 001 111 123
Q ss_pred eEEEEecCCChh---hhH-HHhcCCCC-CCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHHHhh
Q 038826 291 VCIILDKVDKFG---HSE-YLTGGLSR-FGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 291 ~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
-+||+||+.... .+. .+...+.. ...|..||+||+.. .+...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996321 122 22221111 12466799999853 12222223458899999999999999987
Q ss_pred hhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 357 AFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 357 a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+.... ..-.++...-|++.++|-.-.+
T Consensus 175 a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 75432 1223456677777777654443
No 47
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=9.8e-06 Score=82.93 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=103.9
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQ 266 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~ 266 (572)
.+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++..........++... .+...... .....+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN--ASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec--cccccchH-HHHHHHHH
Confidence 46899999999999888654 344579999999999999999998753321111222200 11111111 11111111
Q ss_pred hhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEEec
Q 038826 267 ILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVE 342 (572)
Q Consensus 267 l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~ 342 (572)
+....+ .....+-++++|+++.. +....+...+......+.+|+++... .+.... .....++++
T Consensus 92 ~~~~~~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 92 FARTAP------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HHhcCC------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 111100 00123568999998643 23344444444344566777776432 221111 122468899
Q ss_pred CCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 343 GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 343 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+++.++....+...+-..+. .-..+.+..+++.++|.+--+
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 99999998888877643322 122456788899999887654
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.3e-06 Score=83.93 Aligned_cols=279 Identities=17% Similarity=0.152 Sum_probs=158.3
Q ss_pred CCCCCCccccccccccccccccccC--CCceEEEEeecCcchHhHHHHHHHhhcccccce--EEEEeecccccccccHHH
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCVRL--PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEG--WCFMANVREESKRVELVH 258 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~s~~~~~~~ 258 (572)
...++.+.+|+.+++++...|...- ..+.-+.|+|.+|+|||+.++.+.+++...... .++|+ +.......+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHH
Confidence 3445569999999999998876421 123348899999999999999999987666432 57777 555678888
Q ss_pred HHHHHHHHhhCCCC-cc-ccchHHHHHHHhh--cCceEEEEecCCChh-----hhHHHhcCCCCCCCCcEE--EEEeCCc
Q 038826 259 LRDQIVSQILGEST-VE-TSILPQCIKKRLQ--QMNVCIILDKVDKFG-----HSEYLTGGLSRFGHGSRV--IVTTRDK 327 (572)
Q Consensus 259 l~~~il~~l~~~~~-~~-~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~I--IvTTR~~ 327 (572)
++..|+..++.... .. ..+....+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 99999998863332 12 3445555666653 478999999997432 222333222222 3433 3333333
Q ss_pred hhh--------hhcCCceEEEecCCChhhHHHHHHhhh---hcCCCCCCchHHHHHHHHHHhC-CCchhHHHHhhHh--c
Q 038826 328 KVL--------DKYGVDYVYKVEGFNYRESLEIFCYYA---FRQNHCPGDLLVLSDNVVDYAN-GSSLALNVLRSSF--Y 393 (572)
Q Consensus 328 ~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~L--~ 393 (572)
... ...+.. .+..+|-+.+|-.+.+..++ |......++.-+++..++..-+ --=.||..+-... .
T Consensus 167 ~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 222 222222 36678888888888887765 3334444444444444444444 4444554433322 1
Q ss_pred C-----C-CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCCCCCHHHHHHHHhh----c-c---ch
Q 038826 394 R-----K-SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNN----R-Y---LV 459 (572)
Q Consensus 394 ~-----~-~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~----~-~---~~ 459 (572)
. + +.+.-..+.... -.....-....|+.+.|-.+..+..--.+.....+-..... . . ..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 0 112111111110 11223334678888877766555443233433333332221 1 2 23
Q ss_pred HHHHHHHhhCCceEee
Q 038826 460 HYGLNILAGKAIITIS 475 (572)
Q Consensus 460 ~~~l~~L~~~sLi~~~ 475 (572)
.+.+++|...++|...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3578888888888865
No 49
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=6.3e-06 Score=79.70 Aligned_cols=139 Identities=10% Similarity=0.016 Sum_probs=86.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+.+.|+|..|+|||+|++.+++... ..+++ . ..+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~----~------~~~~~~~~~~-------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH----P------NEIGSDAANA-------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec----H------HHcchHHHHh-------------------hhc-
Confidence 35689999999999999998887542 22554 1 0111111111 111
Q ss_pred ceEEEEecCCCh----hhhHHHhcCCCCCCCCcEEEEEeCC---------chhhhhcCCceEEEecCCChhhHHHHHHhh
Q 038826 290 NVCIILDKVDKF----GHSEYLTGGLSRFGHGSRVIVTTRD---------KKVLDKYGVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 290 r~LlVLDdv~~~----~~~~~l~~~~~~~~~gs~IIvTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
-+|++||+... +.+-.+...+. ..|..||+|++. +.+...+....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999532 22322332222 246779999873 333344445578999999999999999988
Q ss_pred hhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 357 AFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 357 a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
+-... ..-.+++..-|++.+.|..-++..+
T Consensus 166 ~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQ--LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcC--CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 74322 1223567788888888877776543
No 50
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.29 E-value=1e-05 Score=84.10 Aligned_cols=183 Identities=13% Similarity=-0.004 Sum_probs=108.4
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc----c-----------------ceEEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ----F-----------------EGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f-----------------~~~~w 243 (572)
.-.+++|.+..++.+.+.+..+. -...+.++|.+|+||||+|+.++..+... + ....+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 33578999999999998886542 24578899999999999999998864321 1 11122
Q ss_pred EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE
Q 038826 244 MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 244 v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (572)
+. ........ -.+.++..+... -..+++-++|+|+++.. ...+.++..+......+.+|
T Consensus 91 ~~----~~~~~~~~-~~~~l~~~~~~~--------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 91 ID----AASNNGVD-DIREILDNVKYA--------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred ee----ccccCCHH-HHHHHHHHHhcC--------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 22 01001111 111121111100 01234558999999654 44556665554444566766
Q ss_pred EEeCCch-hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 322 VTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 322 vTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
++|.+.. +.... .....+++.+++.++..+.+...+-..... -..+.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 7765443 22221 123578889999999888888766433221 124667888999999887664433
No 51
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=1.6e-05 Score=74.87 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEEEeecccccccccHHHHHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCFMANVREESKRVELVHLRDQIVSQIL 268 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~ 268 (572)
...+.++|..|+||||+|+.+...+-.. ++...++.. ......... .+.++..+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~~~~-i~~i~~~~~ 89 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIKVDQ-VRELVEFLS 89 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCCHHH-HHHHHHHHc
Confidence 3678899999999999999998875321 212222220 000111111 111111111
Q ss_pred CCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEEecCC
Q 038826 269 GESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGF 344 (572)
Q Consensus 269 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L 344 (572)
.. -..+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+.... .....+++.++
T Consensus 90 ~~--------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 90 RT--------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred cC--------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCC
Confidence 00 01245668999999654 34666666665555567777777654 222211 12358999999
Q ss_pred ChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 345 NYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 345 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+.++..+.+.+. + -..+.+..+++.++|.|..
T Consensus 156 ~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 156 SEEALLQWLIRQ--G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCccc
Confidence 999998888776 1 1145688999999998863
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=8.6e-06 Score=85.03 Aligned_cols=170 Identities=9% Similarity=-0.023 Sum_probs=100.8
Q ss_pred CccccccccccccccccccCC--------CceEEEEeecCcchHhHHHHHHHhhccccc--------------------c
Q 038826 188 DLVGLDSHIQRNNSLLCVRLP--------DFQMVRTWSMSGISKTDIAGAIFNQISSQF--------------------E 239 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--------------------~ 239 (572)
+++|-+..++.|.+.+..+.. -...+.++|+.|+|||++|+.+++.+-... +
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 567777777777777765421 245688999999999999999988543221 1
Q ss_pred eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCC
Q 038826 240 GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLS 312 (572)
Q Consensus 240 ~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~ 312 (572)
...++.- ......+.+ .+.+.+.+ .+++-++|+|+++.. .....|+..+.
T Consensus 86 D~~~i~~---~~~~i~i~~--------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 86 DVRVVAP---EGLSIGVDE--------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CEEEecc---ccccCCHHH--------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 1112210 000011111 11222222 234558888999754 34455665555
Q ss_pred CCCCCcEEEEEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHH
Q 038826 313 RFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (572)
Q Consensus 313 ~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 387 (572)
...+++.+|++|.+. .+.... .....+.+++++.++..+.+.... + -..+.+..++..++|.|.....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~------~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G------VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C------CCHHHHHHHHHHcCCCHHHHHH
Confidence 445567677666654 333222 123688999999999988887432 1 1134577889999999975433
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=7e-06 Score=88.17 Aligned_cols=184 Identities=15% Similarity=0.059 Sum_probs=105.5
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccc-------eEEEEeecccccccccHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE-------GWCFMANVREESKRVELVH 258 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~wv~~~~~~s~~~~~~~ 258 (572)
..+++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-..-. ..|-.+ .
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C------------~ 86 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC------------T 86 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC------------h
Confidence 3578998888888877665442 2457889999999999999999986532110 000010 0
Q ss_pred HHHHHHHHhhCCCCcc---ccchHHHHHHH--------hhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE-Ee
Q 038826 259 LRDQIVSQILGESTVE---TSILPQCIKKR--------LQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV-TT 324 (572)
Q Consensus 259 l~~~il~~l~~~~~~~---~~~~~~~l~~~--------L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv-TT 324 (572)
....+.......-... .......+++. ..+++-++|+|+++.. ..++.|+..+....+.+.+|+ ||
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 0001100000000000 00011111111 2346678999999754 456777766554445666554 55
Q ss_pred CCchhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 325 RDKKVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 325 R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+...+..... ....+++.+++.++..+.+...+-..+. .-..+....|++.++|.+--
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 5555543321 2357899999999999999887743321 12245567888899887643
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.26 E-value=6.1e-06 Score=81.82 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCcccccccccc---ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQR---NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
.+.||-+..+.+ |.+++.+ +....+.+||++|+||||||+.++..-+.+- ..||. .|....-.+=.+.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDI 209 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHH
Confidence 567777666554 2222332 3577788999999999999999998654432 45565 33222222222233
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEE--EeCCchhhhh---cCCc
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIV--TTRDKKVLDK---YGVD 336 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIv--TTR~~~v~~~---~~~~ 336 (572)
+++.. -...+.++|.+|.+|.|. +..+-+.+++.. .+|.-++| ||-|+..... ....
T Consensus 210 fe~aq-------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 210 FEQAQ-------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HHHHH-------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhcc
Confidence 22211 112356789999999995 445555565544 36776665 7777644211 1233
Q ss_pred eEEEecCCChhhHHHHHHh
Q 038826 337 YVYKVEGFNYRESLEIFCY 355 (572)
Q Consensus 337 ~~~~l~~L~~~ea~~Lf~~ 355 (572)
.++-++.|+.++-..++.+
T Consensus 274 ~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ceeEeccCCHHHHHHHHHH
Confidence 6889999999999888876
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=7e-06 Score=87.74 Aligned_cols=198 Identities=13% Similarity=0.021 Sum_probs=112.1
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc----c-----------------ceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ----F-----------------EGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f-----------------~~~~wv 244 (572)
-.++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... + .....+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 3579999888777777766442 23567899999999999999998864321 1 011122
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv 322 (572)
. .+...++..+ +.+...... .-..+++-++|+|+++.. ...+.|+..+......+.+|+
T Consensus 92 ~----aa~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 92 D----AASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred e----CcccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 1111111111 111111100 001245679999999643 345666665554334455554
Q ss_pred EeCC-chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhC-CCchhHHHHhhHhc---C-C
Q 038826 323 TTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN-GSSLALNVLRSSFY---R-K 395 (572)
Q Consensus 323 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~L~---~-~ 395 (572)
+|.+ ..+.... .....+++.+++.++....+.+.+...+. .-..+....|++.++ +++.++..+-.... + -
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~I 230 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKI 230 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 4443 3332222 12368899999999988888877643221 122456778888775 45677776655332 1 2
Q ss_pred CHHHHHHHHc
Q 038826 396 SKQHWENALH 405 (572)
Q Consensus 396 ~~~~w~~~l~ 405 (572)
+.+....++.
T Consensus 231 t~e~V~~~l~ 240 (472)
T PRK14962 231 TLETVHEALG 240 (472)
T ss_pred CHHHHHHHHc
Confidence 5555555554
No 56
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=9.4e-06 Score=78.18 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc--eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE--GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|..|+|||.|.+++++.+...++ .+++++ ..++...+...+.. .....+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~-------~~~~~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD-------GEIEEFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT-------TSHHHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc-------ccchhhhhhhh
Confidence 456889999999999999999998766544 355665 33444444444432 22334555555
Q ss_pred cCceEEEEecCCChh---hhHH-HhcCCCC-CCCCcEEEEEeCCchh---------hhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKFG---HSEY-LTGGLSR-FGHGSRVIVTTRDKKV---------LDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~---~~~~-l~~~~~~-~~~gs~IIvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
+ -=+|++||++... .|+. +...+.. ...|.+||+|++...- ...+...-++++++++.++-.+++
T Consensus 97 ~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 S-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp T-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred c-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 3 4488999996432 1221 1111110 1247789999964311 222234558999999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
.+.+-...-. -.++++.-|++.+.+..-.|.
T Consensus 176 ~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 176 QKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 9887543322 224566667776665544443
No 57
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.5e-06 Score=89.38 Aligned_cols=196 Identities=12% Similarity=0.009 Sum_probs=113.0
Q ss_pred CCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc----cceEEEEeecccccccccHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ----FEGWCFMANVREESKRVELV 257 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~wv~~~~~~s~~~~~~ 257 (572)
.|.....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+++.+-.. +...... ...+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 45566789999999999988887653 24578899999999999999999865432 1111000 001111
Q ss_pred HHHHHHHHH-------hhCC---C----C-ccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCC
Q 038826 258 HLRDQIVSQ-------ILGE---S----T-VETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFG 315 (572)
Q Consensus 258 ~l~~~il~~-------l~~~---~----~-~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 315 (572)
...+.+... +..+ . . .+.-+.++.+.+.+ .+++-++|+|+++.. ...+.|+..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 122222211 0000 0 0 01111222333333 245679999999744 34555555444433
Q ss_pred CCcEEEEEe-CCchhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 316 HGSRVIVTT-RDKKVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 316 ~gs~IIvTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
.++.+|++| +...+..... ....+.+.+++.++..+++...... . . -..+.+..+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455555444 4333332221 2258999999999999999874311 1 1 224457789999999998655443
No 58
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.2e-05 Score=88.06 Aligned_cols=187 Identities=14% Similarity=0.058 Sum_probs=106.9
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-c---ceEEEEeecccccccccHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-F---EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f---~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..+++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-.. - .+.. ....+.-...
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~--------~~pCg~C~~C 84 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT--------ATPCGVCQAC 84 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC--------CCCCCccHHH
Confidence 34578998888888888887552 24577899999999999999998854321 0 0000 0011111111
Q ss_pred HHHHHHhhCCCCcc------ccchHHHHHHHh--------hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe
Q 038826 261 DQIVSQILGESTVE------TSILPQCIKKRL--------QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT 324 (572)
Q Consensus 261 ~~il~~l~~~~~~~------~~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT 324 (572)
+.+.. +...+. .....+.+++.+ .++.-++|+|+|+.. ...+.|+..+......+++|++|
T Consensus 85 ~~i~~---g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 85 RDIDS---GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHc---CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 11110 000000 011122222222 234558999999743 45667776665544566666555
Q ss_pred -CCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 325 -RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 325 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
....+.... .....+++++++.++..+.+.+.+-..+.. -..+....|++.++|-+--+
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 433333221 123688999999999988888766332221 22456788888998876444
No 59
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=6.5e-06 Score=90.40 Aligned_cols=187 Identities=11% Similarity=0.018 Sum_probs=106.4
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
...++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.... .. ....+.-...+.+.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHHHH
Confidence 34679999998888888887542 2345789999999999999999986533210 00 00001111111111
Q ss_pred HH-------hhCCCCcc-ccchHHHHHHH-----hhcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCC-ch
Q 038826 265 SQ-------ILGESTVE-TSILPQCIKKR-----LQQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD-KK 328 (572)
Q Consensus 265 ~~-------l~~~~~~~-~~~~~~~l~~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~-~~ 328 (572)
.. +.... .. .++ .+.+.+. ..+++-++|+|+++. ....+.|+..+......+++|++|.+ ..
T Consensus 84 ~g~~~D~ieidaas-~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 84 QGRFVDLIEIDAAS-RTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred cCCCCCceeecccc-cCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 00 00000 00 011 1111111 235667999999974 34566666555544456655555444 44
Q ss_pred hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 329 VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+.... .....|.+++|+.++..+.+.+..-... .....+....|++.++|.+--+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 43221 1236899999999999988887652222 1123455678899999977643
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=9.6e-06 Score=85.60 Aligned_cols=185 Identities=13% Similarity=-0.040 Sum_probs=106.4
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccc---eEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE---GWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
...++||-+..+..|..++..+. -...+.++|..|+||||+|+.+++.+...-. ..|..+ .. ..
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~s----C~ 82 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TS----CL 82 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cH----HH
Confidence 33578999888888888887552 1346789999999999999999996543211 011111 00 01
Q ss_pred HHHHHhhCCCCcc---ccc---hHHHHHHH-----hhcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEE-EeCCc
Q 038826 262 QIVSQILGESTVE---TSI---LPQCIKKR-----LQQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIV-TTRDK 327 (572)
Q Consensus 262 ~il~~l~~~~~~~---~~~---~~~~l~~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIv-TTR~~ 327 (572)
.+.......-..+ ... ..+.+.+. ..++.-++|+|+++. .+.++.|+..+........+|+ ||...
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 1111000000000 000 11112111 234667999999974 4557777766654444555554 44444
Q ss_pred hhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 328 KVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 328 ~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
.+..... ....|.+.+++.++..+.+.+.+-..+ ..-..+....|++.++|-+--
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 4432221 225789999999998888877653322 122345678899999998743
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=9.3e-06 Score=86.60 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=100.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc--ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|..|+|||+|++++++.+.... ..++++. ...+...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-----~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-----KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-----hHHHHHHHHhc
Confidence 35688999999999999999999665432 2344554 2345555555443210 12233334443
Q ss_pred cCceEEEEecCCChh----hhHHHhcCCCC-CCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
..-+||+||+.... ..+.+...+.. ...|..||+|+... .+...+...-++++++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34488999995321 12222222111 12455788887643 22222334457889999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
.+++-.......-.++...-|++.++|.|-.+..+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9887432211123357888999999999988765553
No 62
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=6.4e-06 Score=90.17 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=104.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc---------------------ceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF---------------------EGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~wv 244 (572)
..++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-..- ...+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3589999999999999887542 245789999999999999999988543211 011111
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHH-HhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKK-RLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~II 321 (572)
. .+...++.. .+.++.. ... -..+++-++|+|+++... ..+.|+..+......+++|
T Consensus 94 d----aAs~~gVd~-IRelle~---------------a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 94 D----AASNTGIDN-IREVLEN---------------AQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred e----ccccCCHHH-HHHHHHH---------------HHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 1 011111110 1111110 000 012456799999997543 3445554444333456677
Q ss_pred EEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 322 VTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 322 vTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
++|.+. .+.... +....+.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+.-+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 666543 232211 12246788899999998888876633221 1234567889999998875443
No 63
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=9.1e-06 Score=87.81 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=104.3
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv 244 (572)
..++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. |..++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3579999999999999887542 24567899999999999999999854221 1112222
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIv 322 (572)
. .+....+.++ +.++..+... -..++.-++|+|+++. ....+.|+..+......+++|+
T Consensus 94 d----aas~~~v~~i-R~l~~~~~~~--------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 94 D----AASRTKVEDT-RELLDNIPYA--------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred c----ccccCCHHHH-HHHHHHHhhc--------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 2 1111222221 1122111100 0124566899999974 3456666655554445676666
Q ss_pred EeCC-chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 323 TTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 323 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+|.+ ..+.... .....+++++++.++....+...+-..+.. -..+....|++.++|-+--+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 5543 3332221 122568899999988777666554322211 22345678888888877543
No 64
>PRK05642 DNA replication initiation factor; Validated
Probab=98.20 E-value=1.6e-05 Score=77.45 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=88.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
..+.|+|..|+|||.|++.+++.+...-..++|++ .. ++... ...+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~~------~~~~~----------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----LA------ELLDR----------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----HH------HHHhh----------------hHHHHHhhhhCC
Confidence 56889999999999999999987654434567776 21 11110 011222233222
Q ss_pred eEEEEecCCCh---hhhHH-HhcCCCC-CCCCcEEEEEeCCchh---------hhhcCCceEEEecCCChhhHHHHHHhh
Q 038826 291 VCIILDKVDKF---GHSEY-LTGGLSR-FGHGSRVIVTTRDKKV---------LDKYGVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 291 ~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IIvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
+||+||+... ..|+. +...++. ...|..+|+||+...- ...+....++++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999522 23322 2222211 1246789998875322 112223467899999999999999866
Q ss_pred hhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 357 AFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 357 a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
+....- .-.+++..-|++.+.|-.-.+..+-
T Consensus 179 a~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRGL--HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 644321 1224667777777777655554433
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=1.4e-05 Score=78.01 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+.+.|+|++|+|||+|+..+++.....-..+.++. ..... .... .+.+.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~~-------------------~~~~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFVP-------------------EVLEGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhhH-------------------HHHHHhhh-
Confidence 457899999999999999999987654444556665 21100 0000 11111111
Q ss_pred ceEEEEecCCCh---hhhHH----HhcCCCCCCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHH
Q 038826 290 NVCIILDKVDKF---GHSEY----LTGGLSRFGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 290 r~LlVLDdv~~~---~~~~~----l~~~~~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
--+|++||+... ..|+. +...... ..+.++|+||+.. .+...+....++++++++.++-.+++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 237899999643 22322 2221111 1224799999855 22333444568999999999999998
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
.+++.... ..-.+++..-|++.+.|-.-++..+
T Consensus 177 ~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 177 QLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 87664322 2223566777888887765555433
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.20 E-value=1.1e-05 Score=84.73 Aligned_cols=172 Identities=20% Similarity=0.254 Sum_probs=97.1
Q ss_pred CCCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV 254 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~ 254 (572)
...+.|++..++++.+.+... -...+-|.++|++|+|||++|+++++.....| +. ++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~----v~~-- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IR----VVG-- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EE----eeh--
Confidence 356889999998888765321 12356789999999999999999999765432 22 110
Q ss_pred cHHHHHHHHHHHhhCCCCccccchHHHHHH-HhhcCceEEEEecCCChh------------h----hHHHhcCCCCC--C
Q 038826 255 ELVHLRDQIVSQILGESTVETSILPQCIKK-RLQQMNVCIILDKVDKFG------------H----SEYLTGGLSRF--G 315 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~--~ 315 (572)
..+. ....+. .......+.+ .-...+.+|+||+++... . +..++..+... .
T Consensus 199 --~~l~----~~~~g~----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 --SELV----QKFIGE----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred --HHHh----Hhhccc----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 111111 0111111212 223467899999997431 1 22233222211 2
Q ss_pred CCcEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCC-CchHHHHHHHHHHhCCCc
Q 038826 316 HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCP-GDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 316 ~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 382 (572)
.+..||.||........ ...+..+++++.+.++-.++|..+..+..... .+ ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 35567777765433221 12456799999999999999988764332211 12 355666666653
No 67
>PF14516 AAA_35: AAA-like domain
Probab=98.18 E-value=0.0003 Score=72.29 Aligned_cols=273 Identities=10% Similarity=0.111 Sum_probs=148.6
Q ss_pred CCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeecccccc--cccHHH
Q 038826 182 HLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESK--RVELVH 258 (572)
Q Consensus 182 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~--~~~~~~ 258 (572)
.+.+.+..|+|...-+++.+.|... -..+.|.|+-.+|||+|...+.+.... .|. +++++ +..+.. ..+...
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEE-eecCCCcccCCHHH
Confidence 4556667889986566666666542 258999999999999999999887654 444 34554 222221 235555
Q ss_pred HHHHHHHHhhCCCC---cc----------ccchHHHHHHHh---hcCceEEEEecCCChhh----hHHHhcCCC------
Q 038826 259 LRDQIVSQILGEST---VE----------TSILPQCIKKRL---QQMNVCIILDKVDKFGH----SEYLTGGLS------ 312 (572)
Q Consensus 259 l~~~il~~l~~~~~---~~----------~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~----~~~l~~~~~------ 312 (572)
+++.++..+...-. +. .......+.+.+ .+++.+|++|+++..-. .+.+.+.+.
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 56555555433221 10 122333444443 25799999999974321 122222111
Q ss_pred -CCC-CCc--EEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch
Q 038826 313 -RFG-HGS--RVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 313 -~~~-~gs--~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 383 (572)
... ... -|++.+........ ......++|++++.+|...|..++-.. -.....++|...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHH
Confidence 000 011 22222221111111 123457889999999999998876421 112238899999999999
Q ss_pred hHHHHhhHhcCC--CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCCCC-CHHHHHHHHhhc---c
Q 038826 384 ALNVLRSSFYRK--SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNGE-GRDYVKIILNNR---Y 457 (572)
Q Consensus 384 al~~~g~~L~~~--~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~-~~~~l~~~w~~~---~ 457 (572)
-+..++..+... +.++....-..... .| +++.+.+...+- +.. -.+.+..++.+. .
T Consensus 235 Lv~~~~~~l~~~~~~~~~l~~~a~~~~~------------~~---~~hL~~l~~~L~---~~~~L~~~~~~il~~~~~~~ 296 (331)
T PF14516_consen 235 LVQKACYLLVEEQITLEQLLEEAITDNG------------IY---NDHLDRLLDRLQ---QNPELLEAYQQILFSGEPVD 296 (331)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhcc------------cH---HHHHHHHHHHHc---cCHHHHHHHHHHHhCCCCcc
Confidence 999999998653 32221111000000 01 123333333331 111 122233344332 1
Q ss_pred chHHHHHHHhhCCceEeeCCeEEecH
Q 038826 458 LVHYGLNILAGKAIITISNNKLQMRD 483 (572)
Q Consensus 458 ~~~~~l~~L~~~sLi~~~~~~~~mHd 483 (572)
........|...|||...+|.+.++-
T Consensus 297 ~~~~~~~~L~~~GLV~~~~~~~~~~n 322 (331)
T PF14516_consen 297 LDSDDIYKLESLGLVKRDGNQLEVRN 322 (331)
T ss_pred cChHHHHHHHHCCeEEEeCCEEEEEc
Confidence 22345778999999999988776653
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.7e-05 Score=84.50 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=105.5
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~w 243 (572)
...++||-+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..+-.. +..++.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34578999888888877776542 24578899999999999999998743211 122233
Q ss_pred EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE
Q 038826 244 MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 244 v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (572)
++ .+...++.++. .++...... -..+++-++|+|+++.. ...+.|+..+....+.+++|
T Consensus 90 id----aas~~~vddIR-~Iie~~~~~--------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 90 ID----AASNTSVDDIK-VILENSCYL--------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred Ee----cccCCCHHHHH-HHHHHHHhc--------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 33 12122222211 121111000 01245668999999643 44666666555545666666
Q ss_pred EEe-CCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch
Q 038826 322 VTT-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 322 vTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 383 (572)
++| ..+.+.... .....+++.+++.++..+.+.+.+-..+. .-..+....|++.++|-+-
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 655 334443322 12367899999999998888877643322 1223556788888888765
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.15 E-value=2.9e-06 Score=82.92 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeeccccccc--ccHHHHHHHHHH-----HhhCCCCc-c--ccch
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESKR--VELVHLRDQIVS-----QILGESTV-E--TSIL 278 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~~--~~~~~l~~~il~-----~l~~~~~~-~--~~~~ 278 (572)
...++|+|.+|+|||||++.+++.+.. +|+..+|+. ++.. .++.++++.+.. ....+... . ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~----vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVL----LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEE----EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 457899999999999999999997643 689999998 4444 688899988833 32221111 1 1122
Q ss_pred HHHHHHH-hhcCceEEEEecCCC
Q 038826 279 PQCIKKR-LQQMNVCIILDKVDK 300 (572)
Q Consensus 279 ~~~l~~~-L~~kr~LlVLDdv~~ 300 (572)
....+.. -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2223222 247899999999954
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1.8e-05 Score=86.02 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=104.8
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv 244 (572)
..+++|-+..++.+.+++..+. -...+.++|..|+||||+|+.+++.+-.. |...+++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3578999998888888887542 23567899999999999999999865321 1111122
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIv 322 (572)
. .+....+..+ +.++...... -..+++-++|+|+++... ..+.|+..+......+.+|+
T Consensus 94 ~----~~~~~~vd~i-r~l~~~~~~~--------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 94 D----AASNTQVDAM-RELLDNAQYA--------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred e----ccccCCHHHH-HHHHHHHhhC--------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 1 0111111111 1111111000 013456799999997543 35566655554445666665
Q ss_pred EeCC-chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 323 TTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 323 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
+|.+ ..+.... .....+++++++.++..+.+.+.+-..+. .-..+....|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5543 3333221 11257889999999988887765532221 1234556788899999775 44443
No 71
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.12 E-value=4e-06 Score=85.66 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=63.3
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeecccccccc--cHHHHHHHHHHHhhCCCCcc
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESKRV--ELVHLRDQIVSQILGESTVE 274 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~~~--~~~~l~~~il~~l~~~~~~~ 274 (572)
.+.+.+..-. .-+..+|+|++|+||||||+.+|+.+.. +|+..+|+. ++... ++.++++.+...+.....+.
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~Vv----LIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVL----LIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEE----EeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 4455554322 3457889999999999999999997644 799999998 44444 77888888864322221111
Q ss_pred --------ccchHHHHHHH-hhcCceEEEEecCCC
Q 038826 275 --------TSILPQCIKKR-LQQMNVCIILDKVDK 300 (572)
Q Consensus 275 --------~~~~~~~l~~~-L~~kr~LlVLDdv~~ 300 (572)
.....+..+.. -.++++||++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11112222222 257899999999953
No 72
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=1.8e-05 Score=85.82 Aligned_cols=194 Identities=15% Similarity=0.024 Sum_probs=105.5
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
.-.+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. ....+.-...+.+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-----~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-----GDCCNSCSVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-----CCCCcccHHHHHHH
Confidence 34579999999998888876542 246788999999999999999998653211 110 00001111111111
Q ss_pred HHhhCCCCcc---ccchHHHHH---HH-----hhcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEe-CCchhh
Q 038826 265 SQILGESTVE---TSILPQCIK---KR-----LQQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTT-RDKKVL 330 (572)
Q Consensus 265 ~~l~~~~~~~---~~~~~~~l~---~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTT-R~~~v~ 330 (572)
......-... .......++ +. ..+++-++|+|+++. ......|+..+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1000000000 000111111 11 112344799999964 344556665544333455555544 433333
Q ss_pred hh-cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc-hhHHHHhh
Q 038826 331 DK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLRS 390 (572)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~ 390 (572)
.. ......+++.+++.++....+...+-..+. .-..+.+..+++.++|-+ .|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 112357899999999998888876533221 122455778899999855 45444443
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.7e-05 Score=85.77 Aligned_cols=186 Identities=11% Similarity=-0.059 Sum_probs=104.7
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
..++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-...... ....+.-...+.+..
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------STPCGECDSCVALAP 83 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------CCCCcccHHHHHHHc
Confidence 3578999988888888887542 235688999999999999999998653211000 000000000111110
Q ss_pred HhhCCCCcc------ccchH---HHHHHH-----hhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe-CCch
Q 038826 266 QILGESTVE------TSILP---QCIKKR-----LQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKK 328 (572)
Q Consensus 266 ~l~~~~~~~------~~~~~---~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT-R~~~ 328 (572)
.-.... ++ ....+ +.+++. ..+++-++|+|+++.. ...+.|+..+......+.+|++| ....
T Consensus 84 g~~~~~-dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 84 GGPGSL-DVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCCC-cEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 000000 00 00011 112211 2345568899999744 45666666666555566666555 4444
Q ss_pred hhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 329 VLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 329 v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+...+. ....|++..++.++..+.+.+..-.... .-..+....|++.++|-+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 443321 3468899999999988888765422221 12234567888999997743
No 74
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=2.9e-05 Score=86.01 Aligned_cols=201 Identities=15% Similarity=0.089 Sum_probs=110.1
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc--cc---ceEEEEe-ecccccccccHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS--QF---EGWCFMA-NVREESKRVELVH 258 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~wv~-~~~~~s~~~~~~~ 258 (572)
..+.++|++..+..+.+.+... ....+.|+|.+|+||||||+.+++..+. .+ ...-|+. +.... ..+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~d~~~ 227 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RWDPRE 227 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cCCHHH
Confidence 3457999999988887766433 3457999999999999999999875421 11 1122332 01000 111111
Q ss_pred HHHHH---------------HHHhhCCC------------------C-ccccchHHHHHHHhhcCceEEEEecCCCh--h
Q 038826 259 LRDQI---------------VSQILGES------------------T-VETSILPQCIKKRLQQMNVCIILDKVDKF--G 302 (572)
Q Consensus 259 l~~~i---------------l~~l~~~~------------------~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~ 302 (572)
+...+ +...+... . ......+..+.+.+..++++++.|+.|.. .
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 11111 11111000 0 00223455667777777777776666543 2
Q ss_pred hhHHHhcCCCCCCCCcEEEE--EeCCchhhh-hc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHh
Q 038826 303 HSEYLTGGLSRFGHGSRVIV--TTRDKKVLD-KY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYA 378 (572)
Q Consensus 303 ~~~~l~~~~~~~~~gs~IIv--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 378 (572)
.|+.+...+....+...+++ ||++..... .. .....+.+.+++.++.++++.+.+-..... -..++...|.+++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~ys 385 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARYT 385 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHCC
Confidence 35555544443344444555 566543211 11 122467889999999999999876432211 1234556666666
Q ss_pred CCCchhHHHHhhH
Q 038826 379 NGSSLALNVLRSS 391 (572)
Q Consensus 379 ~GlPLal~~~g~~ 391 (572)
..-+-|+..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 5556777766544
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.3e-05 Score=84.81 Aligned_cols=191 Identities=13% Similarity=-0.009 Sum_probs=108.3
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccc----eEEEEeecccccccccHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE----GWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~wv~~~~~~s~~~~~~~l~ 260 (572)
...+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.... +..+- ..+.-...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVGEHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCcccHHH
Confidence 34689999999999998887552 2457889999999999999999986543221 00000 00000111
Q ss_pred HHHHHHhhCCCCcc---ccchHHHHH---HHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe-CC
Q 038826 261 DQIVSQILGESTVE---TSILPQCIK---KRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RD 326 (572)
Q Consensus 261 ~~il~~l~~~~~~~---~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT-R~ 326 (572)
+.+.......-... .....+.++ +.+ .+++-++|+|+++.. ...+.|+..+......+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 11111100000000 001111111 111 234568999999644 34666665555444566666544 44
Q ss_pred chhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 327 KKVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 327 ~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
..+..... ....+++..++.++....+.+.+-.... .-..+....|++.++|-+.-+.
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 44433221 2357899999999998888876633221 1223567888899999876543
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.04 E-value=2.3e-05 Score=77.84 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=70.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc--cceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ--FEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
..-+.++|++|+||||+|+.+++.+... .....++. ++. ..+ .....+ +....+++.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~----~~l----~~~~~g-------~~~~~~~~~~~ 102 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER----ADL----VGEYIG-------HTAQKTREVIK 102 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH----HHh----hhhhcc-------chHHHHHHHHH
Confidence 4568899999999999999998864321 11112222 111 111 111111 11111222221
Q ss_pred -cCceEEEEecCCC----------hhhhHHHhcCCCCCCCCcEEEEEeCCchh----------hhhcCCceEEEecCCCh
Q 038826 288 -QMNVCIILDKVDK----------FGHSEYLTGGLSRFGHGSRVIVTTRDKKV----------LDKYGVDYVYKVEGFNY 346 (572)
Q Consensus 288 -~kr~LlVLDdv~~----------~~~~~~l~~~~~~~~~gs~IIvTTR~~~v----------~~~~~~~~~~~l~~L~~ 346 (572)
...-+|++|+++. .+.++.++..+........+|+++..... ... ....+++++++.
T Consensus 103 ~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~ 180 (261)
T TIGR02881 103 KALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTV 180 (261)
T ss_pred hccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCH
Confidence 1235889999964 23455566555443344455666543322 111 234688999999
Q ss_pred hhHHHHHHhhhh
Q 038826 347 RESLEIFCYYAF 358 (572)
Q Consensus 347 ~ea~~Lf~~~a~ 358 (572)
++-.+++.+.+-
T Consensus 181 ~el~~Il~~~~~ 192 (261)
T TIGR02881 181 EELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999887763
No 77
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.02 E-value=8.6e-06 Score=71.63 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=46.3
Q ss_pred ccEEecCcccccccchHHHHHHHHhhC-------CCeE----------EEcC-CCCCCCCccHHHHHHhhhcceEEEEee
Q 038826 13 YDVFLSFRGEDTRNNFTSHLFAAFCRE-------KIKT----------FIDE-QLKKGDDIPSALLNAIEESKISVIIFS 74 (572)
Q Consensus 13 ~dvFis~~~~D~~~~f~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 74 (572)
+.|||||++.|.. .....|...+... .+.. +.+. +......+...|.++|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999854 2677777777663 2211 1112 223345788999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHhhhccCceeeeee
Q 038826 75 KGYASSTWCLHELVKILECKKRKGQIVMPVF 105 (572)
Q Consensus 75 ~~y~~s~~c~~El~~~~~~~~~~~~~v~Pif 105 (572)
++-..|.|+.+|+..+++ .+..|+-|-
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998775 334466553
No 78
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.02 E-value=5.8e-05 Score=81.02 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=103.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc--eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE--GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|.+|+|||+|++++++.+..+++ .++++. ...+...+...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~-------~~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN-------TMEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC-------cHHHHHHHHh
Confidence 456899999999999999999998776653 345555 122233333333211 1233444444
Q ss_pred cCceEEEEecCCChh----hhHHHhcCCCC-CCCCcEEEEEeCCch---------hhhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDKK---------VLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
+.-+|||||++... ..+.+...+.. ...|..||+||.... +...+....++++++++.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34589999996321 11222221110 113556888876531 1223333457899999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHH----HhhH--hcCC--CHHHHHHHHcCC
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV----LRSS--FYRK--SKQHWENALHNP 407 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~----~g~~--L~~~--~~~~w~~~l~~l 407 (572)
.+.+-... ..-.+++...|++.+.|..-.|.- +..+ +.++ +....+.++..+
T Consensus 290 ~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 98874322 122346778888888887664432 2221 1222 566666666654
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=2.7e-05 Score=82.06 Aligned_cols=195 Identities=10% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc--cceEEEEeecccccccccHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ--FEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
...+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... +...-|.... ....+.-...+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~ 89 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRD 89 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHH
Confidence 34678998888888888877542 23458899999999999999999865331 1111111000 000111111111
Q ss_pred HHHHhhCC-----C-CccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe-CCch
Q 038826 263 IVSQILGE-----S-TVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKK 328 (572)
Q Consensus 263 il~~l~~~-----~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT-R~~~ 328 (572)
+....... . ....-+....+.+.+ .+.+-++|+|+++.. ..++.++..+....+.+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 11100000 0 000001111122222 234568899999744 35666666655544566666555 4344
Q ss_pred hhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 329 VLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 329 v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+..... ....+++.+++.++..+.+...+-... ..-..+.+..++..++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 433211 124688999999998887776652221 1123466889999999977533
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=7e-05 Score=79.81 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=92.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc--eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE--GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|.+|+|||+||+++++.+...++ .++|++ ..++...+...+... ....+++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~-------~~~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG-------KLNEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc-------cHHHHHHHHH
Confidence 446899999999999999999998766543 355665 123444444444221 1223344444
Q ss_pred cCceEEEEecCCCh---hhh-HHHhcCCCC-CCCCcEEEEEeC-Cchhh--------hhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKF---GHS-EYLTGGLSR-FGHGSRVIVTTR-DKKVL--------DKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IIvTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
...-+|++||+... ... +.+...+.. ...|..||+||. .+.-. ..+...-++++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 45668999999632 111 122211110 123557888885 32221 12223457889999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
.+.+-.... .-.+++...|++.+.|.--.|
T Consensus 273 ~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG--ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC--CCCHHHHHHHHhccccCHHHH
Confidence 888743221 122456778888877754444
No 81
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=5.4e-05 Score=82.73 Aligned_cols=191 Identities=14% Similarity=0.004 Sum_probs=106.4
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+...... . ....+.-...+.+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~--------~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGP-T--------ATPCGVCESCVALAP 81 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC-C--------CCcccccHHHHHhhc
Confidence 3579999999999988887542 24467899999999999999999865421100 0 000000011111110
Q ss_pred HhhCCCC--cc---ccchHH---HHHHHh-----hcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEe-CCchh
Q 038826 266 QILGEST--VE---TSILPQ---CIKKRL-----QQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTT-RDKKV 329 (572)
Q Consensus 266 ~l~~~~~--~~---~~~~~~---~l~~~L-----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTT-R~~~v 329 (572)
.-....+ .+ ....++ .+.+.+ .+++-++|+|++.. ....+.|+..+......+.+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000000 00 000111 111111 24556899999963 445666666665544566655544 44444
Q ss_pred hhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 330 LDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
.... .....+++.+++.++..+.+.+.+-..+. .-..+....|++.++|-+- |+..+
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4322 12368999999999988888776533221 1223456778888888764 44443
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.99 E-value=7.6e-05 Score=79.09 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=92.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc--eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE--GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|.+|+|||+|++++++.+....+ .++++. ...+...+...+... ....+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~-------~~~~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN-------KMEEFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC-------CHHHHHHHHH
Confidence 456889999999999999999998765543 345554 122333344443221 1223344443
Q ss_pred cCceEEEEecCCChh---h-hHHHhcCCCC-CCCCcEEEEEeCCc-h--------hhhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKFG---H-SEYLTGGLSR-FGHGSRVIVTTRDK-K--------VLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIvTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
+ .-+|||||++... . .+.+...+.. ...|..+|+||... . +...+....++++++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 3 3488999996421 1 1222221111 12355688887642 1 1222223357889999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
.+.+-.... .-.+++...|++.+.|.+-.|.
T Consensus 278 ~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 988744322 1225677888888888766544
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=7.5e-05 Score=78.09 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=102.7
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc--------cceEEE-Eeeccccccccc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ--------FEGWCF-MANVREESKRVE 255 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~w-v~~~~~~s~~~~ 255 (572)
.-.+++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+++.+... |...+. +. .....+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~ 89 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----AASNNS 89 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec----cccCCC
Confidence 33578999999988888887542 24588899999999999999998865331 211111 11 011111
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEe-CCchhhhh
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKKVLDK 332 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTT-R~~~v~~~ 332 (572)
...+ ..++..+... -..+++-++++|+++.. ..++.++..+......+.+|++| ....+...
T Consensus 90 ~~~i-~~l~~~~~~~--------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 90 VDDI-RNLIDQVRIP--------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHH-HHHHHHHhhc--------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111 1222111000 01234558999999643 33556654444333455555555 33333222
Q ss_pred c-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch
Q 038826 333 Y-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 333 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 383 (572)
. .....++.++++.++....+...+...+.. -..+.+..++..++|-+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 1 123578999999999888888766433321 224667888888888655
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=4.4e-05 Score=78.05 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
...+++|.+...+.+..++..+. -..++.++|.+|+||||+|+.+++..... ...++ .+. .....+ +..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~~~~i-~~~l 88 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CRIDFV-RNRL 88 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-ccHHHH-HHHH
Confidence 34678999999888888887532 25677789999999999999999876432 22333 122 111111 1111
Q ss_pred HHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh---hhhHHHhcCCCCCCCCcEEEEEeCCchhh-hhc-CCceEE
Q 038826 265 SQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF---GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DKY-GVDYVY 339 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIvTTR~~~v~-~~~-~~~~~~ 339 (572)
....... .+.+.+-+||+|+++.. +..+.+...+.....++++|+||...... ... .....+
T Consensus 89 ~~~~~~~-------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 89 TRFASTV-------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred HHHHHhh-------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 1110000 01134568999999754 22223333233334677888888654221 111 122466
Q ss_pred EecCCChhhHHHHHHh
Q 038826 340 KVEGFNYRESLEIFCY 355 (572)
Q Consensus 340 ~l~~L~~~ea~~Lf~~ 355 (572)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777778777766554
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=4.8e-05 Score=82.98 Aligned_cols=192 Identities=9% Similarity=-0.004 Sum_probs=108.8
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
..+++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-..... . ....+.-...+.+..
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~----~-----~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAP----T-----GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCC----C-----CCCCcccHHHHHHhc
Confidence 3578898887777877776542 24678899999999999999999865321100 0 000000011111110
Q ss_pred HhhCCCCcc------ccc---hHHHHHHH-----hhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-ch
Q 038826 266 QILGESTVE------TSI---LPQCIKKR-----LQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KK 328 (572)
Q Consensus 266 ~l~~~~~~~------~~~---~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~ 328 (572)
. ...+. ... ..+.+.+. ..+++-++|+|+++.. ...+.|+..+........+|++|.+ ..
T Consensus 85 g---~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 85 G---MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred C---CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 0 00000 000 01112111 2345679999999654 4466666665543345556665544 44
Q ss_pred hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc-hhHHHHhhHh
Q 038826 329 VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLRSSF 392 (572)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L 392 (572)
+.... .....+++++++.++..+.+...+..... .-..+.+..|++.++|-+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43221 12247889999999999888876543221 123456788889999854 6777765544
No 86
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.92 E-value=3.1e-05 Score=82.92 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=88.0
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhccccc-----ceEEEEeecccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-----EGWCFMANVREE 250 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~wv~~~~~~ 250 (572)
..+.|.+..++++.+.+... -...+-+.++|++|+|||++|+++++.+...+ ....|+. +
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----I 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----c
Confidence 45778888888777665321 12345689999999999999999999765542 2334443 2
Q ss_pred cccccHHHHHHHHHHHhhCCCCccccchHHHHHHH-hhcCceEEEEecCCChh---------h-----hHHHhcCCCCCC
Q 038826 251 SKRVELVHLRDQIVSQILGESTVETSILPQCIKKR-LQQMNVCIILDKVDKFG---------H-----SEYLTGGLSRFG 315 (572)
Q Consensus 251 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l~~~~~~~~ 315 (572)
... . ++....+.............++. ..+++++|+||+++... + +..++..+....
T Consensus 258 ~~~----e----Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 258 KGP----E----LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred cch----h----hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 110 0 11000000000001111112221 13478999999997321 1 234444333222
Q ss_pred --CCcEEEEEeCCchhhh-----hcCCceEEEecCCChhhHHHHHHhhh
Q 038826 316 --HGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 316 --~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.+..||.||-...... ....+..++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3444555664433221 11345678999999999999998875
No 87
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00018 Score=76.60 Aligned_cols=152 Identities=9% Similarity=0.109 Sum_probs=86.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
...+.|+|..|+|||+|++.+++.+......++++. ...+...+...+... ....+++.+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~-------~~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG-------EMQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc-------hHHHHHHHcc-c
Confidence 356889999999999999999997755444456665 122333444333211 1223333333 3
Q ss_pred ceEEEEecCCChh----hhHHHhcCCCC-CCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHHHh
Q 038826 290 NVCIILDKVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIFCY 355 (572)
Q Consensus 290 r~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (572)
.-+|++||+.... ..+.+...+.. ...|..||+||... .+...+...-++++.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588899985321 11122211110 11356788888542 1222233346889999999999999988
Q ss_pred hhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 356 YAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
++-.... .-..++..-|+..+.+.
T Consensus 283 k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 7743221 11234555566665544
No 88
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00013 Score=80.79 Aligned_cols=191 Identities=13% Similarity=0.023 Sum_probs=107.3
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
-.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+....... .....+.....+.+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHHhc
Confidence 3589999998888888876542 245678999999999999999998653211000 0001111122222221
Q ss_pred HhhCCC------CccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-chhhh
Q 038826 266 QILGES------TVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKVLD 331 (572)
Q Consensus 266 ~l~~~~------~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~v~~ 331 (572)
...... ....-+..+.+.+.+ .+++-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 110000 000000111122221 234668999999643 4466666555544456666665543 33332
Q ss_pred hc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHH
Q 038826 332 KY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (572)
Q Consensus 332 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 387 (572)
.. .....+++..++.++....+...+...+.. -..+.+..+++.++|.+..+..
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 123467888999998888887766432211 2245678899999998865443
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00017 Score=77.56 Aligned_cols=174 Identities=10% Similarity=0.004 Sum_probs=102.5
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc---------------------cceEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ---------------------FEGWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv 244 (572)
-.+++|-+..++.+.+.+..+. -...+.++|..|+||||+|+.++..+-.. |.....+
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3578899998888888887542 24567889999999999999998865321 0111111
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCC
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHG 317 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (572)
. .+...++. ..+.+.+.+ .+++-++|+|+++.. ...+.|+..+....+.
T Consensus 94 d----aas~~gvd--------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 94 D----AASNRGID--------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred e----CccCCCHH--------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1 00001111 111222222 245669999999644 3455565555444445
Q ss_pred cEEEEEe-CCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 318 SRVIVTT-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 318 s~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
..+|++| +...+.... .....+++.+++.++....+...+-..+. .-..+.+..+++.++|.+..+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 5555544 433333221 12357889999999988888776533221 1223567788888998765443
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.90 E-value=3.6e-05 Score=87.51 Aligned_cols=170 Identities=17% Similarity=0.212 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----c
Q 038826 164 ELVDEIVKDILKKIHDIPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----F 238 (572)
Q Consensus 164 ~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f 238 (572)
..+++...++..+.. +..-+.++||+.+++.+.+.|.... ..-+.++|.+|+|||++|+.+++++... +
T Consensus 163 ~~l~~~~~~l~~~~r----~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 163 DALEKYTVDLTEKAK----NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred hHHHHHhhhHHHHHh----cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 345554444444433 2233479999999999998887553 3346799999999999999999975332 1
Q ss_pred -ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCCh-----------hhhH
Q 038826 239 -EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKF-----------GHSE 305 (572)
Q Consensus 239 -~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~~~ 305 (572)
...+|..+. ..+. ... ......++....+.+.+ ..++.+|++|++... +.-+
T Consensus 237 ~~~~~~~~~~---------~~l~----a~~--~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 237 KNAKIYSLDM---------GSLL----AGT--KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred cCCeEEEecH---------HHHh----hhc--cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 233443311 1111 000 00000111112222222 346889999999622 1122
Q ss_pred HHhcCCCCCCCC-cEEEEEeCCchhhhh-------cCCceEEEecCCChhhHHHHHHhhh
Q 038826 306 YLTGGLSRFGHG-SRVIVTTRDKKVLDK-------YGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 306 ~l~~~~~~~~~g-s~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.|.+.+. .| -++|-+|..+..... ......+++++++.++..+++....
T Consensus 302 ~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3334333 23 344544443221110 0123578999999999999998654
No 91
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.89 E-value=2.8e-05 Score=79.96 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=60.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccc--cccHHHHHHHHHHHhhCCCCcc--------ccch
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESK--RVELVHLRDQIVSQILGESTVE--------TSIL 278 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~--~~~~~~l~~~il~~l~~~~~~~--------~~~~ 278 (572)
-+.++|+|.+|+|||||++.+++.+..+ |+..+|+. +.. ..++.++++.++..+.....+. ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~Vl----LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVL----LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEE----EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 4689999999999999999999976554 99899998 443 3688899988854433222211 1122
Q ss_pred HHHHHHH-hhcCceEEEEecCCCh
Q 038826 279 PQCIKKR-LQQMNVCIILDKVDKF 301 (572)
Q Consensus 279 ~~~l~~~-L~~kr~LlVLDdv~~~ 301 (572)
.+..+.. -.+++++|++|.+...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 2222222 2578999999999643
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.88 E-value=0.0001 Score=84.58 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc------
Q 038826 165 LVDEIVKDILKKIHDIPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF------ 238 (572)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------ 238 (572)
.+++...++..+.. +..-+.++||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 169 ~l~~~~~~L~~~~r----~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQAR----EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHhc----CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 44444444444332 2334589999999999998887553 23456999999999999999999764331
Q ss_pred ceEEEEeeccccc-ccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCCh-------hhhH---H
Q 038826 239 EGWCFMANVREES-KRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKF-------GHSE---Y 306 (572)
Q Consensus 239 ~~~~wv~~~~~~s-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-------~~~~---~ 306 (572)
...+|..+..... .......+ ...+...+.+.- .+++.+|++|++... .+.+ .
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~---------------e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~ 307 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEF---------------ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANL 307 (852)
T ss_pred CCeEEEeehhhhhcccccchHH---------------HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHH
Confidence 1233332221110 00000000 111122222221 246899999998532 1111 2
Q ss_pred HhcCCCCCCCCcEEEEEeCCchhhhh-------cCCceEEEecCCChhhHHHHHHhhhhc--CCCCCCchHHHHHHHHHH
Q 038826 307 LTGGLSRFGHGSRVIVTTRDKKVLDK-------YGVDYVYKVEGFNYRESLEIFCYYAFR--QNHCPGDLLVLSDNVVDY 377 (572)
Q Consensus 307 l~~~~~~~~~gs~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~i~~~ 377 (572)
|.+.+. ...-++|-||..+..... .....++.|++++.++..+++....-. ......-..+....+++.
T Consensus 308 Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 308 LKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 334332 123456655554322111 012358999999999999997543311 111111123445566666
Q ss_pred hCCCc
Q 038826 378 ANGSS 382 (572)
Q Consensus 378 ~~GlP 382 (572)
+.+..
T Consensus 386 s~ryi 390 (852)
T TIGR03345 386 SHRYI 390 (852)
T ss_pred ccccc
Confidence 65543
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00018 Score=76.82 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=104.3
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----c-c----------------eEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----F-E----------------GWC 242 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~----------------~~~ 242 (572)
.-.+++|.+..++.+.+.+..+. -...+.++|..|+||||+|+.+++.+-.. . . ...
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 34689999999988888886542 24568899999999999999999864321 0 0 011
Q ss_pred EEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHH-HHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcE
Q 038826 243 FMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIK-KRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSR 319 (572)
Q Consensus 243 wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (572)
++. .....++..+. .+. +.+. .-..+.+-++|+|+++.. ...+.|+..+......+.
T Consensus 94 ~i~----g~~~~gid~ir-~i~---------------~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 94 EID----GASHRGIEDIR-QIN---------------ETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred Eee----ccccCCHHHHH-HHH---------------HHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 111 00000111110 111 1110 011255678999999643 345555555554445666
Q ss_pred EEEEeC-Cchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 320 VIVTTR-DKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 320 IIvTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
+|++|. ...+.... .....+++.+++.++....+...+-..+ ..-..+.+..+++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666653 33332221 1235789999999998888877653222 11234567888999988654 44443
No 94
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=8.5e-05 Score=71.22 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=77.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~~~~-------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DIFFN-------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hhhhc-------------------h-------hHH-hcC
Confidence 56899999999999999998775432 2222 00000 0 001 123
Q ss_pred eEEEEecCCChhh--hHHHhcCCCCCCCCcEEEEEeCCchh-------hhhcCCceEEEecCCChhhHHHHHHhhhhcCC
Q 038826 291 VCIILDKVDKFGH--SEYLTGGLSRFGHGSRVIVTTRDKKV-------LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN 361 (572)
Q Consensus 291 ~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIvTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 361 (572)
-+|++||+....+ +-.+...+. ..|..||+|++.... ...+...-++++++++.++-..++.+.+-...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999964322 222222222 246789999875422 22233345799999999998888877663221
Q ss_pred CCCCchHHHHHHHHHHhCCCchhH
Q 038826 362 HCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
..-.+++.+-|++.+.|---.+
T Consensus 165 --l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred --CCCCHHHHHHHHHHccCCHHHH
Confidence 1122456667777766654443
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00019 Score=77.42 Aligned_cols=179 Identities=13% Similarity=0.025 Sum_probs=104.9
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-ccc--------------------eEEEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QFE--------------------GWCFM 244 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~--------------------~~~wv 244 (572)
-.+++|-+...+.+...+..+. -.....++|..|+||||+|+.+++.+-. ... .++.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3578998888888888886542 2456789999999999999999886421 110 11111
Q ss_pred eecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE
Q 038826 245 ANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 245 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv 322 (572)
. .+...++..+. .++...... -..+++-++|+|+++.. +..+.|+..+....+.+++|+
T Consensus 92 d----aas~~gId~IR-elie~~~~~--------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 92 D----AASNRGIDDIR-ELIEQTKYK--------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred c----cccccCHHHHH-HHHHHHhhC--------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 1 11111121111 111110000 00134568999999744 445666655554445677777
Q ss_pred EeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 323 TTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 323 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
+|.+. .+.... .....+++.+++.++..+.+...+-..+. .-..+.+..|++.++|-+--+.
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHH
Confidence 66553 222111 12357899999999998888766533222 1224567889999999885443
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00019 Score=79.67 Aligned_cols=185 Identities=15% Similarity=0.041 Sum_probs=104.4
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-..-....+-. .+ -....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p--------C~---~C~~~-- 82 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP--------CQ---ECIEN-- 82 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc--------hh---HHHHh--
Confidence 3578998888888888887542 2456789999999999999999986432110000000 00 00000
Q ss_pred HhhCCCCcc---------ccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE-EEeCCch
Q 038826 266 QILGESTVE---------TSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI-VTTRDKK 328 (572)
Q Consensus 266 ~l~~~~~~~---------~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II-vTTR~~~ 328 (572)
. +...+. .....+.+.+.+ .+++-++|+|+++.. ..+..|+..+......+.+| +|+....
T Consensus 83 -~-~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 83 -V-NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred -h-cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0 000000 000112222222 245669999999643 45666665555444455544 5555444
Q ss_pred hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 329 VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
+.... .....+++.+++.++..+.+...+-..+. .-..+.+..+++.++|-+- |+..+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44321 22358899999999998888775532221 1223457788999988654 44433
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.85 E-value=0.00012 Score=76.79 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV 254 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~ 254 (572)
-.++.|.+..+++|.+.+... -...+-|.++|++|+|||+||+++++.....|- .+. .+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~----~s--- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV----GS--- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe----hH---
Confidence 346778888877776655321 123567999999999999999999997654432 121 00
Q ss_pred cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCCC--CC
Q 038826 255 ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--GH 316 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~ 316 (572)
.+. ....+.. .......+.......+.+|++|+++... .+..++..+... ..
T Consensus 214 ---~l~----~k~~ge~---~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 ---EFV----QKYLGEG---PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred ---HHH----HHhcchh---HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 1111110 0111122222334578999999986320 122233322211 23
Q ss_pred CcEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 317 GSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 317 gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+..||+||........ ...+..++++..+.++..++|..+.-+.. ...+. ...++++.+.|+.-|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dv--d~~~la~~t~g~sga 353 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEV--DLEDFVSRPEKISAA 353 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCccc--CHHHHHHHcCCCCHH
Confidence 5678888875543321 12456789999999988888876643222 11111 134566666666443
No 98
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00036 Score=71.28 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=60.3
Q ss_pred CceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCC
Q 038826 289 MNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCP 364 (572)
Q Consensus 289 kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 364 (572)
++-++|+|+++. ....+.|+..+.....++.+|+||.+. .+.... .....+.+.+++.+++.+.+.... +.
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc----
Confidence 344557799974 445666665555444677777777765 333222 123578999999999998887653 11
Q ss_pred CchHHHHHHHHHHhCCCchhHHHH
Q 038826 365 GDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 365 ~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
...+.+..++..++|.|+....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999755433
No 99
>PRK08116 hypothetical protein; Validated
Probab=97.82 E-value=5.4e-05 Score=75.18 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=57.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
..+.|+|.+|+|||.||.++++.+..+...+++++ ...++..+........ ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~----~~~~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG----KEDENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc----cccHHHHHHHhcCCC
Confidence 35889999999999999999998765544556665 2334444443332211 111223344444444
Q ss_pred eEEEEecCC--Chhhh--HHHhcCCCC-CCCCcEEEEEeCC
Q 038826 291 VCIILDKVD--KFGHS--EYLTGGLSR-FGHGSRVIVTTRD 326 (572)
Q Consensus 291 ~LlVLDdv~--~~~~~--~~l~~~~~~-~~~gs~IIvTTR~ 326 (572)
||||||+. ....| +.+...+.. ...+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999993 22222 222222211 1245678999864
No 100
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00015 Score=79.90 Aligned_cols=192 Identities=10% Similarity=0.016 Sum_probs=104.7
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc--cceEEEEeecccccccccHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ--FEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
...++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. .+.-.|.... ....+.-...+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~---~~~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV---TEPCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc---CCCCccCHHHHH
Confidence 34679999888888888876542 23568899999999999999999865321 1101111100 001111111111
Q ss_pred HHHHhhCC-----C-Ccc-ccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE-EeCCc
Q 038826 263 IVSQILGE-----S-TVE-TSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV-TTRDK 327 (572)
Q Consensus 263 il~~l~~~-----~-~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv-TTR~~ 327 (572)
+...-... . ... .++. ..+.+.+ .+.+-++|+|+++.. ...+.|+..+......+.+|+ |++..
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~I-r~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDI-RQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HhccCCCCeEEecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11100000 0 000 0111 1112222 244568899999754 346666666554444555554 44444
Q ss_pred hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch
Q 038826 328 KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 328 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 383 (572)
.+.... .....+++.+++.++....+.+.+-.... .-..+.+..+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 443322 23468999999999988777765532221 1224567889999999544
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.78 E-value=0.00015 Score=63.45 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEeecCcchHhHHHHHHHhhcc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
|.|+|.+|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 102
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=3.5e-05 Score=81.29 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=95.9
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
.++.|.+..++++.+.+... -...+-|.++|.+|+|||+||+.+++.....|-. +. .+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~----~se--- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV----GSE--- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee----cch---
Confidence 45788998888887766421 1234578899999999999999999987655421 21 010
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCCC--CCC
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--GHG 317 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~g 317 (572)
+.. ...+.. .......+.....+.+.+|+||+++... .+..++..+..+ ..+
T Consensus 253 ---L~~----k~~Ge~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 ---LIQ----KYLGDG---PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred ---hhh----hhcchH---HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 110 000100 0011112222234567899999975220 112222222211 235
Q ss_pred cEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCC-CCCchHHHHHHHHHHhCCCc
Q 038826 318 SRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 318 s~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 382 (572)
..||+||........ ...+..++++..+.++..++|..+...-.- ...+ ...++..+.|+-
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 678888775443322 124567899999999999999877533221 1112 345555665544
No 103
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.74 E-value=0.00013 Score=64.11 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.+.|+|.+|+||||+|+.++.........++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999997766554455554
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00038 Score=77.07 Aligned_cols=190 Identities=12% Similarity=-0.000 Sum_probs=104.7
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-ceEEEEeecccccccccHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-EGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
-..++|.+...+.|..++..+. -...+.++|..|+||||+|+.+++.+-... .... ....+.-...+.+.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCRAIA 85 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHHHHh
Confidence 3578999988888888887542 235678999999999999999999653321 1000 00011111122221
Q ss_pred HHhhCCCCcc---ccchHHHHHHH---h-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-chhh
Q 038826 265 SQILGESTVE---TSILPQCIKKR---L-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKVL 330 (572)
Q Consensus 265 ~~l~~~~~~~---~~~~~~~l~~~---L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~v~ 330 (572)
.......... .....+.+++. + .+++-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 1110000000 00111122221 1 244568999999754 4566666655544445555554443 3333
Q ss_pred hhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHH
Q 038826 331 DKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 331 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
... .....+++..++.++....+.+.+-..... -..+.+..|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 221 123577888999988887777665332211 123557888999999776443
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00026 Score=76.96 Aligned_cols=156 Identities=9% Similarity=0.169 Sum_probs=90.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc--ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|..|+|||.|+.++++.....+ ..++++. ...+...+...+.. .....+++.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~-------~~~~~f~~~y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD-------GKGDSFRRRYR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh-------ccHHHHHHHhh
Confidence 34589999999999999999999765543 2345665 22333334333321 11223344443
Q ss_pred cCceEEEEecCCCh---hhh-HHHhcCCCC-CCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKF---GHS-EYLTGGLSR-FGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
. -=+|||||+... +.+ +.|...++. ...|..|||||... .+...+...-+++|++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347889999532 111 112211111 12356788988753 22233344568899999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
.+++-...- .--+++++-|++.+.+..-.|
T Consensus 456 ~kka~~r~l--~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQL--NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCC--CCCHHHHHHHHHhccCCHHHH
Confidence 988743321 122456666776666554333
No 106
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00025 Score=70.81 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=92.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh-
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ- 287 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~- 287 (572)
.++=|.+||++|.|||-||++++++....| +. +.. . +++....++ ...+.+.+.+.-+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Ir----vvg---S-----ElVqKYiGE----GaRlVRelF~lAre 242 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IR----VVG---S-----ELVQKYIGE----GARLVRELFELARE 242 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceE-----EE----ecc---H-----HHHHHHhcc----chHHHHHHHHHHhh
Confidence 466789999999999999999999877655 33 111 1 122222122 1233344444443
Q ss_pred cCceEEEEecCCChh----------------hhHHHhcCCCCCC--CCcEEEEEeCCchhhh-----hcCCceEEEecCC
Q 038826 288 QMNVCIILDKVDKFG----------------HSEYLTGGLSRFG--HGSRVIVTTRDKKVLD-----KYGVDYVYKVEGF 344 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L 344 (572)
+.+..|.+|.++... .+-+|+..+.-|. .+.|||..|-..+++. .-..+..++++.-
T Consensus 243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCC
Confidence 458999999996321 1333444554443 3568888776554432 2235678889866
Q ss_pred ChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCchh----HHHHhhHh
Q 038826 345 NYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLA----LNVLRSSF 392 (572)
Q Consensus 345 ~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLa----l~~~g~~L 392 (572)
+.+.-.++|.-|+-.-. ...-+ .+.+++.|.|.-=| +.+=|+++
T Consensus 323 d~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 323 DEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 66666778877763322 12223 34566667766533 44445544
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00023 Score=68.94 Aligned_cols=261 Identities=13% Similarity=0.113 Sum_probs=137.9
Q ss_pred CCCCCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHH
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..-.+|||-++..++|.-.+... ...+--|.++|++|.||||||.-+++.+..++...- ..-.....++..++
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts----Gp~leK~gDlaaiL 98 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS----GPALEKPGDLAAIL 98 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc----cccccChhhHHHHH
Confidence 34468999998888887666532 123668999999999999999999998766543210 00011112222221
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh-hhHH-HhcCCCC--------CC-----------CCcE
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG-HSEY-LTGGLSR--------FG-----------HGSR 319 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-~~~~-l~~~~~~--------~~-----------~gs~ 319 (572)
..+ .+ .=+|.+|.+.... ..+. +.+.+.. .+ +-+-
T Consensus 99 ----t~L---e~-----------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 ----TNL---EE-----------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ----hcC---Cc-----------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 111 11 1133344442110 0111 1111100 11 2233
Q ss_pred EEEEeCCchhhhhcC--CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCH
Q 038826 320 VIVTTRDKKVLDKYG--VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSK 397 (572)
Q Consensus 320 IIvTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~ 397 (572)
|=.|||.-.+..... ..-+.+++.-+.+|-.+...+.+.--+ .+-.++.+.+|+++..|-|--..-+-+.++.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD--- 229 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD--- 229 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH---
Confidence 446888655433221 334677888888998888888763211 1223466889999999999754433333322
Q ss_pred HHHHHHHcCC--cCCCcccHHHHHHHhhccCChhhHHHHhhhcccCCC--CCHHHHHHHHhhc-cchHH-HHHHHhhCCc
Q 038826 398 QHWENALHNP--KQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNG--EGRDYVKIILNNR-YLVHY-GLNILAGKAI 471 (572)
Q Consensus 398 ~~w~~~l~~l--~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~--~~~~~l~~~w~~~-~~~~~-~l~~L~~~sL 471 (572)
+..+-..- .....+.....|.+-=..|+.-.++.+..+.-.+.| ...+.+......+ ...++ +=--|++.+|
T Consensus 230 --fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gf 307 (332)
T COG2255 230 --FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGF 307 (332)
T ss_pred --HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhch
Confidence 22221110 000012233334444455666666666655544422 4566666655554 33333 3335888899
Q ss_pred eEee-CCeE
Q 038826 472 ITIS-NNKL 479 (572)
Q Consensus 472 i~~~-~~~~ 479 (572)
|+.. .|++
T Consensus 308 i~RTpRGR~ 316 (332)
T COG2255 308 IQRTPRGRI 316 (332)
T ss_pred hhhCCCcce
Confidence 9877 5553
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.00014 Score=83.62 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=84.1
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----c-ceEEEEeecccccccccHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----F-EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..++||+++++++.+.|.... ..-+.++|.+|+|||++|+.+++++... . ...+|.-+.. .+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~---------~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG---------LLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH---------HHh
Confidence 468999999999999998653 2345699999999999999999875421 1 2334443211 111
Q ss_pred HHHHHHhhCCCC--ccccchHHHHHHHhhcCceEEEEecCCChh---------hhHH-HhcCCCCCCCCcEEEEEeCCch
Q 038826 261 DQIVSQILGEST--VETSILPQCIKKRLQQMNVCIILDKVDKFG---------HSEY-LTGGLSRFGHGSRVIVTTRDKK 328 (572)
Q Consensus 261 ~~il~~l~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~~~~-l~~~~~~~~~gs~IIvTTR~~~ 328 (572)
.+... +..+.+...+.+.-..++.+|++|++.... +... |.+.+. ...-++|.+|..+.
T Consensus 248 -------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHH
Confidence 01110 001112222222223568899999994211 1222 323322 12245565555443
Q ss_pred hhhh-------cCCceEEEecCCChhhHHHHHHh
Q 038826 329 VLDK-------YGVDYVYKVEGFNYRESLEIFCY 355 (572)
Q Consensus 329 v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 355 (572)
.... .....++.++..+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3111 11235678888898888888764
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00064 Score=74.40 Aligned_cols=188 Identities=12% Similarity=0.023 Sum_probs=105.8
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----cceEEEEeecccccc--cccHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----FEGWCFMANVREESK--RVELV 257 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~wv~~~~~~s~--~~~~~ 257 (572)
.-.+++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.. +++.. ...++++.. ..++.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLDVI 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCCeE
Confidence 33578998888888888887542 24578899999999999999999865321 11100 000000000 00000
Q ss_pred HHHHHHHHHhhCCCCccccchHHHHHHH-----hhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-chh
Q 038826 258 HLRDQIVSQILGESTVETSILPQCIKKR-----LQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKV 329 (572)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~v 329 (572)
. +.+......++ ...+.+. ..+++-++|+|++... ..++.|+..+....+.+.+|++|.+ ..+
T Consensus 92 ~--------idgas~~~vdd-Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 92 E--------IDGASNTSVQD-VRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred E--------ecCcccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 0 00000000001 1111111 1345668999999644 4567777666655556666665543 333
Q ss_pred hhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 330 LDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
.... .....++..+++.++-.+.+...+...+. .-..+.+..|++.++|.+-.+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3221 12356899999999988888776643322 123456777888888877533
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=97.67 E-value=0.00026 Score=78.50 Aligned_cols=172 Identities=18% Similarity=0.156 Sum_probs=95.4
Q ss_pred CCccccccccccccccc---cccC-------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLL---CVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
.+++|.++..+++.+.+ .... ...+-|.++|++|+|||+||+.+++..... |+. ++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is~---- 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----ISG---- 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----ccH----
Confidence 46778777666554443 2211 124568999999999999999999865322 222 111
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCCCC--CCCc
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLSRF--GHGS 318 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gs 318 (572)
..+.... .+.. .......+.....+.+++|++|+++.. ..+..++..+..+ ..+.
T Consensus 250 s~f~~~~----~g~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 250 SEFVEMF----VGVG---AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHHHh----hhhh---HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 0111100 0000 111222334444567899999999633 1133444333222 2355
Q ss_pred EEEEEeCCchhhh-----hcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 319 RVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 319 ~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
.||.||....... ....+..+.++..+.++-.++|+.++-... .........+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCC
Confidence 6666665543322 112456788999999999999988763311 11123356677777773
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.00017 Score=82.99 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 165 LVDEIVKDILKKIHDIPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.+++...+...+.. +..-+.++||+.++..+.+.|.... ..-+.++|.+|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r----~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAE----QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHh----cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 44444444444332 2233469999999999999887653 334669999999999999999997643
No 112
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00049 Score=69.05 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=70.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc-c-ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh-c
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ-F-EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ-Q 288 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~-~ 288 (572)
-+.++|.+|+|||++|+.+++.+... + ....|+. ++. .. ++..+.+... ..+.+.+. -
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~~----l~~~~~g~~~-------~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----DD----LVGQYIGHTA-------PKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----HH----HhHhhcccch-------HHHHHHHHHc
Confidence 57899999999999998888754322 1 1112333 221 11 2222222111 11122221 1
Q ss_pred CceEEEEecCCCh-----------hhhHHHhcCCCCCCCCcEEEEEeCCchhhhhc--------CCceEEEecCCChhhH
Q 038826 289 MNVCIILDKVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY--------GVDYVYKVEGFNYRES 349 (572)
Q Consensus 289 kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~--------~~~~~~~l~~L~~~ea 349 (572)
..-+|+||++... +..+.|...+.....+.+||+++-.+..-..+ .....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468999999622 22344555544444566777776543221111 1245789999999999
Q ss_pred HHHHHhhh
Q 038826 350 LEIFCYYA 357 (572)
Q Consensus 350 ~~Lf~~~a 357 (572)
.+++...+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99988765
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00054 Score=75.22 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=103.5
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
...+++|.+...+.+.+.+..+. -...+.++|..|+||||+|+.+++.+-..-.. ...+.+.-...+.+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~---------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP---------DGEPCNECEICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---------CCCCCCccHHHHHHh
Confidence 34689999999999988887643 24567889999999999999998854221000 000001111111111
Q ss_pred HHhhCCCCcc---ccchHH---HHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE-EeCCchhh
Q 038826 265 SQILGESTVE---TSILPQ---CIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV-TTRDKKVL 330 (572)
Q Consensus 265 ~~l~~~~~~~---~~~~~~---~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv-TTR~~~v~ 330 (572)
......-..+ ...... .+.+.. .+++-++|+|+++.. ..+..|+..+......+.+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1100000000 001111 222221 345668899999744 456666655554334555554 44444333
Q ss_pred hhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 331 DKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 331 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
... .....++..+++.++..+.+...+-..+.. -..+.+..|++.++|-+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 221 123568889999999888887766332211 1235567788888886653
No 114
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00042 Score=72.88 Aligned_cols=221 Identities=15% Similarity=0.093 Sum_probs=121.3
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCce
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNV 291 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~ 291 (572)
++.|.|+-++||||+++.+.....+. .+++...........+.+..... .+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~-------------------~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY-------------------IELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH-------------------HHhhccCCc
Confidence 89999999999999997777765444 55554211111111111111111 111111778
Q ss_pred EEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhh------cCCceEEEecCCChhhHHHHHHhhhhcCCCCCC
Q 038826 292 CIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK------YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPG 365 (572)
Q Consensus 292 LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 365 (572)
+|+||.|.....|+..+..+...++. +|++|+-+...... .|....+++-||+..|-..+-...+ . ..
T Consensus 97 yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~-~~ 170 (398)
T COG1373 97 YIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E-PS 170 (398)
T ss_pred eEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c-hh
Confidence 99999999999999888777665555 88888877655322 1334678999999998876543111 0 00
Q ss_pred chHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcCCcCCCcccHHHHHHHhh-ccCChhhHHHHhhhccc-CCC
Q 038826 366 DLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPKQISDPDIHDMLKISY-DELNYKEKDLFLDIACF-FNG 443 (572)
Q Consensus 366 ~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy-~~L~~~~k~~fl~la~f-p~~ 443 (572)
... ..-+-.-..||.|-++..-...-. .......++. ..+.+..- ... ...++.+.+++.. ++.
T Consensus 171 ~~~-~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~~~~~~-~~~k~i~~~l~~~~g~~ 236 (398)
T COG1373 171 KLE-LLFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERGKIENA-DLMKRILRFLASNIGSP 236 (398)
T ss_pred HHH-HHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHcCcccH-HHHHHHHHHHHhhcCCc
Confidence 111 122233457999998754322111 0011111111 01111110 011 2445555555444 445
Q ss_pred CCHHHHHHHHh-hc-cchHHHHHHHhhCCceEe
Q 038826 444 EGRDYVKIILN-NR-YLVHYGLNILAGKAIITI 474 (572)
Q Consensus 444 ~~~~~l~~~w~-~~-~~~~~~l~~L~~~sLi~~ 474 (572)
++.+.+...+. -. -....+++-|.+.-++..
T Consensus 237 ~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 237 ISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred cCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 67777777773 33 455667777777777764
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.65 E-value=0.00034 Score=76.08 Aligned_cols=173 Identities=20% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCcccccccccccccccc---c-------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLLC---V-------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
.+++|.+...+++.+.+. . +....+-+.++|++|+|||+||+.+++.....| +. ++ .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~----~ 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS----G 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----H
Confidence 456777666555443332 1 111245688999999999999999998653322 22 11 1
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCCC--CCCc
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--GHGS 318 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs 318 (572)
..+.. ...+.. ...+...+.......+.+|++|+++... .+..++..+... ..+.
T Consensus 122 ~~~~~----~~~g~~---~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 122 SDFVE----MFVGVG---ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHHHH----HHhccc---HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11111 111110 1112222333334567899999995421 122333333211 2344
Q ss_pred EEEEEeCCchh-----hhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 319 RVIVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 319 ~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
.||.||..... ......+..++++..+.++-.++|..+.-..... . ......+++.+.|..
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 56666654332 1112355678899999988899988765332211 1 112457777777744
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00047 Score=76.30 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=104.3
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----------------------cceEE
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----------------------FEGWC 242 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~~~~ 242 (572)
-.+++|-+...+.|...+..+. -...+.++|..|+||||+|+.++..+-.. |+ ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~ 93 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IH 93 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eE
Confidence 3578999988888888887542 24568899999999999999988865311 11 11
Q ss_pred EEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEE
Q 038826 243 FMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRV 320 (572)
Q Consensus 243 wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (572)
.+. .+....+..+. .++..+... -..+++-++|+|+++.. ...+.|+..+.....++.+
T Consensus 94 ~ld----~~~~~~vd~Ir-~li~~~~~~--------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 94 ELD----AASNNSVDDIR-NLIEQVRIP--------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred Eec----ccccCCHHHHH-HHHHHHhhC--------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 111 11111111111 111111000 01234558899999744 4466666655544456666
Q ss_pred EE-EeCCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 321 IV-TTRDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 321 Iv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
|+ ||....+.... ....++++.+++.++....+.+.+-..+. .-..+.+..|++.++|-.--
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 55 44545444332 22357899999999998888876533221 12235678888999886543
No 117
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00012 Score=73.50 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=103.3
Q ss_pred CCCccccccccccccccccccCCC-ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPD-FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
.+.|.+|+.++..+..++...+.. +..|-|+|-.|.|||.+.+++.+.... ..+|++ .-+.+....+...|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 457899999999999999876654 455689999999999999999986522 347998 677889999999999
Q ss_pred HHhh-CCCC-cc-------ccchHHHHHH--Hhh--cCceEEEEecCCChhhhHH-----Hh---cCCCCCCCCcEEEEE
Q 038826 265 SQIL-GEST-VE-------TSILPQCIKK--RLQ--QMNVCIILDKVDKFGHSEY-----LT---GGLSRFGHGSRVIVT 323 (572)
Q Consensus 265 ~~l~-~~~~-~~-------~~~~~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~-----l~---~~~~~~~~gs~IIvT 323 (572)
...+ ...+ .. .......+.+ ... ++.++|||||++...+.+. +. ..++ -+.. +|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEEE
Confidence 9885 2222 11 1122233333 122 3589999999976544322 11 1122 1233 3444
Q ss_pred eCCc---hhhhhcCCce--EEEecCCChhhHHHHHHhh
Q 038826 324 TRDK---KVLDKYGVDY--VYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 324 TR~~---~v~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 356 (572)
+-.. .....+|... ++..+.-+.+|-.+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4322 2222234333 4556778888888887654
No 118
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00032 Score=81.06 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=84.3
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc------ceEEEEeecccccccccHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF------EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
+.++||+.++..+...|.... ..-+.++|.+|+|||++|..+++++...+ ...+|..+. ..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~---------~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM---------GALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH---------HHHh
Confidence 469999999999999887653 23456899999999999999999764432 223333211 1111
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhh-cCceEEEEecCCChh----------hhHHHhcCCCCCCCCcEEEEEeCCchh
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQ-QMNVCIILDKVDKFG----------HSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~gs~IIvTTR~~~v 329 (572)
. ..... .+....+...+.+.-+ +++.+|++|++.... ..+.|.+.+. . ..-++|-+|..+..
T Consensus 242 a----~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~-g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 242 A----GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-R-GELHCIGATTLDEY 314 (852)
T ss_pred h----cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-c-CceEEEEeCcHHHH
Confidence 0 00000 0001112222222212 368999999996331 1222333322 1 12345544443332
Q ss_pred hhh-------cCCceEEEecCCChhhHHHHHHhhh
Q 038826 330 LDK-------YGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 330 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
... ......+.++..+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 110 1123467899999999999887553
No 119
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00055 Score=69.55 Aligned_cols=191 Identities=9% Similarity=0.036 Sum_probs=107.4
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc---------------cccceEEEEeeccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS---------------SQFEGWCFMANVREES 251 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---------------~~f~~~~wv~~~~~~s 251 (572)
.+++|-+...+.+.+.+..+. -.....++|..|+||+++|..+++.+- ..++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 367888888888888886552 246899999999999999999988532 123444555411000
Q ss_pred ccccHHHHHHHHHHHhh--CCC-CccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE
Q 038826 252 KRVELVHLRDQIVSQIL--GES-TVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 252 ~~~~~~~l~~~il~~l~--~~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (572)
+.. .+-...+...+ ... ..+.-+.++.+.+.+ .+.+-++|+|+++.. ...+.|+..+.... .+.+|
T Consensus 82 ~g~---~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGK---LITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccc---ccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000 00000011111 000 011111223344443 245678999999754 34555555544433 34455
Q ss_pred -EEeCCchhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 322 -VTTRDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 322 -vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
+|+....+.... .....+++.+++.++..+.+...... . ........++..++|.|.....+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~---~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--E---ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--c---cchhHHHHHHHHcCCCHHHHHHH
Confidence 444444444332 23368899999999999999876421 1 11111357889999999765443
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00032 Score=77.36 Aligned_cols=188 Identities=14% Similarity=0.072 Sum_probs=102.1
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
...++||-+...+.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.. ... ....+.-.....+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~----------~~~c~~c~~c~~i 82 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT----------AEPCNVCPPCVEI 82 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC----------CCCCCccHHHHHH
Confidence 34589999988888888886542 24567899999999999999998864321 100 0000000111111
Q ss_pred HHHhhCCCCcc------ccc---hHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE-EeCC
Q 038826 264 VSQILGESTVE------TSI---LPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV-TTRD 326 (572)
Q Consensus 264 l~~l~~~~~~~------~~~---~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv-TTR~ 326 (572)
.. +...+. ... -.+.+.+.+ .+++-++|+|+++.. ...+.|+..+......+.+|+ ||..
T Consensus 83 ~~---g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 83 TE---GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred hc---CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 00 000000 000 111222222 234558899999644 345566655544444666655 5444
Q ss_pred chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc-hhHHHH
Q 038826 327 KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVL 388 (572)
Q Consensus 327 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 388 (572)
..+.... .....+++.+++.++....+...+-..+. .-..+....|++.++|-. .|+..+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444322 12346788899998888777765422221 122355677888888854 444444
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0003 Score=72.88 Aligned_cols=131 Identities=13% Similarity=0.106 Sum_probs=82.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
...+.|||..|.|||.|++++.+......+....+. + ........++..+.. ......++.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~-------~~~~~Fk~~y--~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD-------NEMEKFKEKY--S 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh-------hhHHHHHHhh--c
Confidence 567999999999999999999998877776433333 1 123333333333322 2344455555 3
Q ss_pred ceEEEEecCCChh-------hhHHHhcCCCCCCCCcEEEEEeCCc---------hhhhhcCCceEEEecCCChhhHHHHH
Q 038826 290 NVCIILDKVDKFG-------HSEYLTGGLSRFGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 290 r~LlVLDdv~~~~-------~~~~l~~~~~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
-=++++||++-.. .+-.+...+. ..|..||+|++.. .+...+...-++++.+++.+.....+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 3488899995321 1111222222 2345899998643 22333445568999999999999999
Q ss_pred Hhhhhc
Q 038826 354 CYYAFR 359 (572)
Q Consensus 354 ~~~a~~ 359 (572)
.+++-.
T Consensus 254 ~kka~~ 259 (408)
T COG0593 254 RKKAED 259 (408)
T ss_pred HHHHHh
Confidence 987643
No 122
>PRK08181 transposase; Validated
Probab=97.57 E-value=0.00019 Score=71.04 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=28.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-+.|+|.+|+|||.||..+++....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999987655444556665
No 123
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.56 E-value=9.2e-05 Score=66.85 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=54.9
Q ss_pred cEEecCccccc-ccchHHHHHHHHhhC-CCeEEEcC-CCCC--CCCccHHHHHHhhhcceEEEEeecCc
Q 038826 14 DVFLSFRGEDT-RNNFTSHLFAAFCRE-KIKTFIDE-QLKK--GDDIPSALLNAIEESKISVIIFSKGY 77 (572)
Q Consensus 14 dvFis~~~~D~-~~~f~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 77 (572)
-|||||++... ....|..|++.|+.. |+.|.+|. +... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999999543 235799999999999 99999998 7744 77889999999999999999999655
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.55 E-value=0.0013 Score=65.96 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=72.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-c-ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-F-EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
..+.++|.+|+||||+|+.+++..... + ...-|+. ++ ... +.....+... ......+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~~---~~~~~~l~~---a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHTA---PKTKEVLKK---A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccch---HHHHHHHHH---c
Confidence 357899999999999999998854221 1 1112333 22 111 2222212111 011111221 1
Q ss_pred CceEEEEecCCCh-----------hhhHHHhcCCCCCCCCcEEEEEeCCchhhhh--------cCCceEEEecCCChhhH
Q 038826 289 MNVCIILDKVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK--------YGVDYVYKVEGFNYRES 349 (572)
Q Consensus 289 kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea 349 (572)
..-+|++|++... +..+.|...+.....+.+||+++..+.+... -.....+.+++++.+|-
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 3359999999642 2344455544444456777777754332110 01345789999999999
Q ss_pred HHHHHhhhh
Q 038826 350 LEIFCYYAF 358 (572)
Q Consensus 350 ~~Lf~~~a~ 358 (572)
.+++...+-
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 999887763
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00014 Score=82.00 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=83.7
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-----c-ceEEEEeecccccccccHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-----F-EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++... + +..+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHHH-
Confidence 369999999999999888643 2345689999999999999999864322 1 2333332 11111
Q ss_pred HHHHHHhhCCCC-ccccchHHHHHHHh-hcCceEEEEecCCCh----------hhhHH-HhcCCCCCCCCcEEEEEeCCc
Q 038826 261 DQIVSQILGEST-VETSILPQCIKKRL-QQMNVCIILDKVDKF----------GHSEY-LTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 261 ~~il~~l~~~~~-~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~~~~-l~~~~~~~~~gs~IIvTTR~~ 327 (572)
+ .+... ...+.....+.+.+ +..+.+|++|++... .+... +.+.+. ...-++|-+|..+
T Consensus 254 ---l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQ 325 (758)
T ss_pred ---h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChH
Confidence 1 01100 00111222222222 346789999999632 11221 223222 1233455444433
Q ss_pred hhhhh-------cCCceEEEecCCChhhHHHHHHhh
Q 038826 328 KVLDK-------YGVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 328 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
..... ......+.+++++.++..+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 32110 012357899999999999998854
No 126
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0022 Score=61.51 Aligned_cols=177 Identities=10% Similarity=0.017 Sum_probs=102.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCC-cc---ccchHHHHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGEST-VE---TSILPQCIKK 284 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~-~~---~~~~~~~l~~ 284 (572)
+.+++.++|.-|.|||.+++......-+.=-.++.+. ....+...+...++..+..... .. .++....+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 4569999999999999999955554333222233333 3456677788888888877322 11 2333334443
Q ss_pred Hh-hcCc-eEEEEecCCCh--hhhHHHh---cCCCCCCCCcEEEEEeCCc-------hhhhhcC-CceE-EEecCCChhh
Q 038826 285 RL-QQMN-VCIILDKVDKF--GHSEYLT---GGLSRFGHGSRVIVTTRDK-------KVLDKYG-VDYV-YKVEGFNYRE 348 (572)
Q Consensus 285 ~L-~~kr-~LlVLDdv~~~--~~~~~l~---~~~~~~~~gs~IIvTTR~~-------~v~~~~~-~~~~-~~l~~L~~~e 348 (572)
.. ++++ ..++.|+..+. +.++.+. ..-...+.--+|+.--..+ .+....+ ...+ |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4566 89999998533 3343332 2211111111233322111 0011111 1234 8999999998
Q ss_pred HHHHHHhhhhcCCCCCCc-hHHHHHHHHHHhCCCchhHHHHhh
Q 038826 349 SLEIFCYYAFRQNHCPGD-LLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 349 a~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
...++..+.-+...+.+- ..+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888877665443322222 245678899999999999987764
No 127
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.00029 Score=69.68 Aligned_cols=35 Identities=20% Similarity=0.069 Sum_probs=25.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..+.|+|.+|+|||+||..+++.....-..+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999999886433333344554
No 128
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.46 E-value=0.0013 Score=65.07 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=106.3
Q ss_pred cccccccccccC-CCceEEEEeecCcchHhHHHHHHHhhcccccc------eEEEEeecccccccccHHHHHHHHHHHhh
Q 038826 196 IQRNNSLLCVRL-PDFQMVRTWSMSGISKTDIAGAIFNQISSQFE------GWCFMANVREESKRVELVHLRDQIVSQIL 268 (572)
Q Consensus 196 ~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~wv~~~~~~s~~~~~~~l~~~il~~l~ 268 (572)
++.|.++|..+. ...+-+.|+|.+|+|||++++.+.......++ .++.+. .-..++...+...|+..++
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhC
Confidence 444555555433 23567899999999999999999986544332 244454 5567899999999999998
Q ss_pred CCCCc-c-ccchHHHHHHHhhc-CceEEEEecCCCh-----hhhHHHhcCCCCCC---CCcEEEEEeCCchhhhhcC---
Q 038826 269 GESTV-E-TSILPQCIKKRLQQ-MNVCIILDKVDKF-----GHSEYLTGGLSRFG---HGSRVIVTTRDKKVLDKYG--- 334 (572)
Q Consensus 269 ~~~~~-~-~~~~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~---~gs~IIvTTR~~~v~~~~~--- 334 (572)
.+... . ...........++. +--+||+|.+.+. .+-..++..+...+ .=+-|.+-|++..-+-..+
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 87652 1 33333444445544 4458999999653 11111211111111 2334556665432221111
Q ss_pred --CceEEEecCCChhhH-HHHHHhhh--hcCC-CCCCchHHHHHHHHHHhCCCchhHH
Q 038826 335 --VDYVYKVEGFNYRES-LEIFCYYA--FRQN-HCPGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 335 --~~~~~~l~~L~~~ea-~~Lf~~~a--~~~~-~~~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
-..++.++.-..++- ..|+.... +.-. ...-...+++..|...++|+.=-+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 124566666655443 44443221 1111 1122346789999999999865443
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.44 E-value=0.00045 Score=78.81 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=91.2
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
+++.|.+..++.+.+++... -...+-|.++|.+|+|||+||+.+++.....| +.+. .+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~----~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN----GP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe----cH----
Confidence 45788888888887765321 12246788999999999999999999765433 2222 00
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh-------------hhHHHhcCCCCC-CCCcEEE
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG-------------HSEYLTGGLSRF-GHGSRVI 321 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~gs~II 321 (572)
.+ .....+. ....+...+.....+.+.+|++|+++... ....|...+... ..+..++
T Consensus 247 --~i----~~~~~g~---~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 --EI----MSKYYGE---SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred --HH----hcccccH---HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 00 0000000 01112222333335567899999985321 122333322211 2233344
Q ss_pred E-EeCCch-hhhh----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 322 V-TTRDKK-VLDK----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 322 v-TTR~~~-v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
| ||.... +-.. ......+.+...+.++-.+++..+.-+ ..... ......+++.+.|..
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcc--ccCHHHHHHhCCCCC
Confidence 4 443322 1111 113456788888888888888755421 11111 112456777777764
No 130
>PRK06526 transposase; Provisional
Probab=97.40 E-value=0.00015 Score=71.30 Aligned_cols=36 Identities=17% Similarity=-0.003 Sum_probs=26.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..-+.|+|.+|+|||+||..+.+.....-..+.|+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 346889999999999999999886543322344443
No 131
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.39 E-value=0.00097 Score=76.10 Aligned_cols=172 Identities=20% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..+.|.+...+.|.+.+.. +....+-|.++|++|+|||+||+++++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~------~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR------G--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 4567877777766655432 112245688999999999999999999765443 1121 0
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--------------hhhHHHhcCCCCC--CCCcE
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--------------GHSEYLTGGLSRF--GHGSR 319 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~~--~~gs~ 319 (572)
. .++....+.. ...+...+...-...+.+|++|+++.. ..+..++..+... ..+.-
T Consensus 521 -~----~l~~~~vGes---e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 521 -P----EILSKWVGES---EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -H----HHhhcccCcH---HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 0 1111111110 011112222223456799999998632 1123343333311 23445
Q ss_pred EEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCC-CCCchHHHHHHHHHHhCCCc
Q 038826 320 VIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 320 IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 382 (572)
||.||........ -..+..+.++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 6666655433221 135578889999999999998765422211 1112 355667777654
No 132
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=0.00019 Score=66.66 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=26.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-+.|+|.+|+|||.||.++++....+-..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45889999999999999999986544434456776
No 133
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.0016 Score=63.58 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=45.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
...+.++|.+|+|||+||.++++.+...-..++++. ..++...+-.... .. +.....+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~-~~----~~~~~~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFS-NS----ETSEEQLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHh-hc----cccHHHHHHHhc-c
Confidence 347889999999999999999997655545566665 2233333322221 10 111223334454 3
Q ss_pred ceEEEEecCCC
Q 038826 290 NVCIILDKVDK 300 (572)
Q Consensus 290 r~LlVLDdv~~ 300 (572)
.=|||+||+..
T Consensus 163 ~dlLvIDDig~ 173 (244)
T PRK07952 163 VDLLVIDEIGV 173 (244)
T ss_pred CCEEEEeCCCC
Confidence 45888999953
No 134
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0047 Score=62.68 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=60.2
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-chhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++-++|+|+++.. ..-..|+..+.....++.+|++|.+ ..+..... ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 45568999999754 3455555555544467777777664 34433321 23578899999999988886531 1
Q ss_pred CCchHHHHHHHHHHhCCCchhHHHH
Q 038826 364 PGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
....+..++..++|.|+....+
T Consensus 187 ---~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 ---SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1223667899999999866443
No 135
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.00048 Score=66.87 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=71.1
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh-c-ccccceEEEEeecccccc-----cccHHHHH
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ-I-SSQFEGWCFMANVREESK-----RVELVHLR 260 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~wv~~~~~~s~-----~~~~~~l~ 260 (572)
.+.+|......+...|.. ...|.+.|.+|.|||+||.+++.. + ...|..++-..-.-...+ +.+..+-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 456677777777776653 248999999999999999998874 3 445665444431111111 11221111
Q ss_pred ----HHHHHHhh---CCCC-c-cc----cchHHHHHHHhhcCc---eEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE
Q 038826 261 ----DQIVSQIL---GEST-V-ET----SILPQCIKKRLQQMN---VCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 261 ----~~il~~l~---~~~~-~-~~----~~~~~~l~~~L~~kr---~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv 322 (572)
.-+...+. +... + .. ....-.--.+++++. -+||+|.+.+. .+...++.. .+.+|++|+
T Consensus 132 ~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~ 208 (262)
T PRK10536 132 APYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEE
Confidence 11111111 1000 0 00 000000123456654 49999999754 455666644 458999999
Q ss_pred EeCC
Q 038826 323 TTRD 326 (572)
Q Consensus 323 TTR~ 326 (572)
|--.
T Consensus 209 ~GD~ 212 (262)
T PRK10536 209 NGDI 212 (262)
T ss_pred eCCh
Confidence 8653
No 136
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.00057 Score=62.85 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=27.2
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc---cccceEEEEe
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS---SQFEGWCFMA 245 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~wv~ 245 (572)
.|.|+|++|+||||||+.+++... -+|+..+|-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 588999999999999999999754 3466666543
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.30 E-value=0.0045 Score=59.54 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCCCCCccccccccccccccccc--cCCCceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCV--RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
+...+.++|.|.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34456799999988877543321 11135568899999999999999999976554
No 138
>PRK06921 hypothetical protein; Provisional
Probab=97.30 E-value=0.00035 Score=69.31 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=29.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (572)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 3568899999999999999999987654 45567776
No 139
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.30 E-value=0.003 Score=62.71 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+.|.|.|.+|+|||+||+.+++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999998553
No 140
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00074 Score=66.02 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=29.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...+.|+|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356889999999999999999998766555567776
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.30 E-value=0.0002 Score=74.91 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc--ccceEEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS--QFEGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
.++++.+..++.+...|... +.|.++|++|+|||++|+.+++.+.. .+..+.|+. ++...+...+...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccC
Confidence 35777788888888777643 46888999999999999999997643 466777887 666666555543221
Q ss_pred HHhhCCCCcc--cc-chHHHHHHHhh--cCceEEEEecCCCh
Q 038826 265 SQILGESTVE--TS-ILPQCIKKRLQ--QMNVCIILDKVDKF 301 (572)
Q Consensus 265 ~~l~~~~~~~--~~-~~~~~l~~~L~--~kr~LlVLDdv~~~ 301 (572)
...... .. -..+.++.... +++++||+|+++..
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 111111 11 12223333322 46899999999644
No 142
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.29 E-value=0.00041 Score=66.96 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++|+|..|+|||||...+.......|+.++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999998889998777775
No 143
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0016 Score=64.13 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=49.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh----cccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ----ISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKR 285 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~----~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~ 285 (572)
-|+|.++|++|.|||+|+++++++ ..+.|....-+. + +-..++.+..+.- .+......+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsES----gKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSES----GKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhh----hhHHHHHHHHHHHH
Confidence 479999999999999999999995 344566555554 2 2334444443332 22234455566666
Q ss_pred hhcCce--EEEEecCC
Q 038826 286 LQQMNV--CIILDKVD 299 (572)
Q Consensus 286 L~~kr~--LlVLDdv~ 299 (572)
+..+.. .+.+|.|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 666553 44578885
No 144
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.28 E-value=0.0012 Score=70.88 Aligned_cols=175 Identities=19% Similarity=0.090 Sum_probs=90.1
Q ss_pred CCccccccccccccccc---cc-----cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHH
Q 038826 187 EDLVGLDSHIQRNNSLL---CV-----RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVH 258 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~ 258 (572)
..+.|.+...+.+.... .. +-...+-|.++|++|+|||.+|+.+++.....|- -+. . ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~---~l~----~------~~ 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL---RLD----V------GK 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---EEE----h------HH
Confidence 45677766555444321 10 1123567899999999999999999997543321 111 0 00
Q ss_pred HHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--------------hhHHHhcCCCCCCCCcEEEEEe
Q 038826 259 LRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--------------HSEYLTGGLSRFGHGSRVIVTT 324 (572)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~~~gs~IIvTT 324 (572)
+.....+.. ...+...+...-...+++|++|+++..- .+..++..+.....+.-||.||
T Consensus 295 ----l~~~~vGes---e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 ----LFGGIVGES---ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----hcccccChH---HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 111111100 0111112222223578999999996321 0122222222223344456677
Q ss_pred CCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 325 RDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 325 R~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
.+.... .....+..+.++..+.++-.++|..+.-+..... ........+++.+.|..
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 554321 2223567889999999999999987764322111 00112345666666554
No 145
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00075 Score=66.44 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=46.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
..-+.++|.+|+|||.||.++.+.+...--.+.|+. ..++..++...... ......+.+.++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~------~~~~~~l~~~l~~- 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDE------GRLEEKLLRELKK- 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc------CchHHHHHHHhhc-
Confidence 346889999999999999999998774334566776 33444444433322 1122233333322
Q ss_pred ceEEEEecCC
Q 038826 290 NVCIILDKVD 299 (572)
Q Consensus 290 r~LlVLDdv~ 299 (572)
-=||||||+-
T Consensus 168 ~dlLIiDDlG 177 (254)
T COG1484 168 VDLLIIDDIG 177 (254)
T ss_pred CCEEEEeccc
Confidence 3389999994
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.27 E-value=0.0016 Score=74.29 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCcccccccccccccccccc------CC-CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR------LP-DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++|-+..++.+.+.+... .+ ...++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46788888888877766531 11 234688999999999999999998763
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.27 E-value=0.00058 Score=66.89 Aligned_cols=177 Identities=15% Similarity=0.123 Sum_probs=105.0
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc--cccceEEEEeecccccccccHHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS--SQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
...+++|-+..++.|.+.+.. ........+|++|.|||+.|+.++..+- +-|++.+-=.+ +|..-+..-.-..
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr~K 108 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVREK 108 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchhhh
Confidence 345788888888888888776 2567889999999999999999998643 23554332111 2222221100000
Q ss_pred HHHHhhCCCCccccchHHHHHHHh---h---cCc-eEEEEecCCCh--hhhHHHhcCCCCCCCCcEEE-EEeCCchhhhh
Q 038826 263 IVSQILGESTVETSILPQCIKKRL---Q---QMN-VCIILDKVDKF--GHSEYLTGGLSRFGHGSRVI-VTTRDKKVLDK 332 (572)
Q Consensus 263 il~~l~~~~~~~~~~~~~~l~~~L---~---~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II-vTTR~~~v~~~ 332 (572)
+ .....+.-.. . -++ -.+|||+++.. +.|..+...+..+...++.| ||+--..+...
T Consensus 109 i-------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 109 I-------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred h-------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0 0000000000 0 122 47899999865 56888887777666666655 44433322221
Q ss_pred cC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 333 YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 333 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
.. .-..|..++|..++...-+...+-..+. +-..+..+.|++.++|-
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGD 223 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCc
Confidence 11 1245788999999998888888744332 23345677888888773
No 148
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.00085 Score=73.98 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCCCccccccccccccccccccC---CCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRL---PDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+++|-+..++++..+|.... ...+++.|+|++|+||||+++.++..+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34578898888888888876533 2346799999999999999999998654
No 149
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0028 Score=65.11 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=81.2
Q ss_pred ccc-cccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-c--------------------cceEEEEee
Q 038826 189 LVG-LDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-Q--------------------FEGWCFMAN 246 (572)
Q Consensus 189 ~vG-R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~--------------------f~~~~wv~~ 246 (572)
++| -+..++.+.+.+..+. -.....++|+.|+||||+|+.+++.+-. . ++...++.-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 444 3344455555554331 2457799999999999999999885422 1 111112210
Q ss_pred cccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcE
Q 038826 247 VREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSR 319 (572)
Q Consensus 247 ~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (572)
......+ +.++.+.+.+ .+.+-++|+|+++.. ...+.|+..+.....++.
T Consensus 86 ---~~~~i~i--------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 86 ---DGQSIKK--------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred ---ccccCCH--------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 0000011 1111122222 234557899999744 345666666665556777
Q ss_pred EEEEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhh
Q 038826 320 VIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 320 IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
+|++|.+. .+.... .....+++.+++.++..+.+...
T Consensus 143 ~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 143 AILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77777654 333222 13367899999999998887653
No 150
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.0031 Score=65.26 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=102.5
Q ss_pred CCCCCcccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhcccccce--EEEEeecccccccccHHHH
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEG--WCFMANVREESKRVELVHL 259 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~s~~~~~~~l 259 (572)
..+..++||+.|+..+.+++... .+..+-+-|.|-+|.|||.+...++.+....... ++.++ ...-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHH
Confidence 34568999999999999998753 3456788899999999999999999876665543 46665 2222445566
Q ss_pred HHHHHHHhhCCCC--ccccchHHHHHHHhhc--CceEEEEecCCChhh--hHHHhcCCCCC-CCCcEEEEEeCCc-----
Q 038826 260 RDQIVSQILGEST--VETSILPQCIKKRLQQ--MNVCIILDKVDKFGH--SEYLTGGLSRF-GHGSRVIVTTRDK----- 327 (572)
Q Consensus 260 ~~~il~~l~~~~~--~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IIvTTR~~----- 327 (572)
+..|...+..... ....+..+.+.+.... ..+|+|||.++.... -..+...+.|. -+++++|+----.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 6666666522111 1122334455555544 368999999864321 11111111111 1355555432111
Q ss_pred -hhhhhc----C-CceEEEecCCChhhHHHHHHhhh
Q 038826 328 -KVLDKY----G-VDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 328 -~v~~~~----~-~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
..+... . ....+..+|-+.++-.++|..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111 1 23467788999999999999876
No 151
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.0019 Score=61.76 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.|+|.+|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999998753
No 152
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0056 Score=64.14 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=83.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
....+.+.|++|+|||+||..++.. ..|+.+--++ ...--++.+..+ ............+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaK-------------c~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAK-------------CAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHH-------------HHHHHHHHHHhhcC
Confidence 4667889999999999999999864 5677544443 100000000000 00111222333345
Q ss_pred CceEEEEecCCChhh------------hHHHh---cCCCCCCCCcEEEEEeCCchhhhhcC----CceEEEecCCCh-hh
Q 038826 289 MNVCIILDKVDKFGH------------SEYLT---GGLSRFGHGSRVIVTTRDKKVLDKYG----VDYVYKVEGFNY-RE 348 (572)
Q Consensus 289 kr~LlVLDdv~~~~~------------~~~l~---~~~~~~~~gs~IIvTTR~~~v~~~~~----~~~~~~l~~L~~-~e 348 (572)
.--.||+||+...-+ ++.|+ ...|..+..--|+-||-...++..|+ ....++|+.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 567899999964433 23332 22232233334556788888888887 346789999987 77
Q ss_pred HHHHHHhhh-hcCCCCCCchHHHHHHHHHHh
Q 038826 349 SLEIFCYYA-FRQNHCPGDLLVLSDNVVDYA 378 (572)
Q Consensus 349 a~~Lf~~~a-~~~~~~~~~~~~~~~~i~~~~ 378 (572)
..+.++..- |. +...+.++.+...+|
T Consensus 678 ~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 777776542 22 223344555555554
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.20 E-value=0.0024 Score=73.77 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCcccccccccccccccccc-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..++|.+..++.+...+... .....++.++|+.|+|||+||+.+++.....-...+.+. .+. +.-
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id----~se-~~~--- 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID----MSE-FME--- 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE----hHH-hhh---
Confidence 46889888888887776532 112357889999999999999999986533333334443 221 111
Q ss_pred HHHHHHHhhCCCCcc-ccchHHHHHHHhhcC-ceEEEEecCC--ChhhhHHHhcCC
Q 038826 260 RDQIVSQILGESTVE-TSILPQCIKKRLQQM-NVCIILDKVD--KFGHSEYLTGGL 311 (572)
Q Consensus 260 ~~~il~~l~~~~~~~-~~~~~~~l~~~L~~k-r~LlVLDdv~--~~~~~~~l~~~~ 311 (572)
......+.+..+.. .......+.+.++.+ .-+|+||++. +.+.+..|+..+
T Consensus 640 -~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 640 -KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred -hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 11122233332211 111112234444333 3699999997 344455554433
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.16 E-value=0.00082 Score=77.76 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCccccccccccccccccccC------C-CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRL------P-DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..++|.+..++.+...+.... . ...++.++|++|+|||++|+.++......-...+.++ .+..... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d----~s~~~~~-~- 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID----MSEYMEK-H- 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chhhccc-c-
Confidence 468999998888888776421 1 2457889999999999999999986544333334443 2221111 1
Q ss_pred HHHHHHHhhCCCCcc-ccchHHHHHHHhhcC-ceEEEEecCCCh--hhhHHHhcCC
Q 038826 260 RDQIVSQILGESTVE-TSILPQCIKKRLQQM-NVCIILDKVDKF--GHSEYLTGGL 311 (572)
Q Consensus 260 ~~~il~~l~~~~~~~-~~~~~~~l~~~L~~k-r~LlVLDdv~~~--~~~~~l~~~~ 311 (572)
....+.+..+.. .......+.+.++.+ ..+|+||+++.. +.+..|+..+
T Consensus 639 ---~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 639 ---SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred ---hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 112222222211 111112333444333 348999999743 4455555443
No 155
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.012 Score=59.96 Aligned_cols=90 Identities=8% Similarity=0.020 Sum_probs=60.3
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++=++|+|+++.. .....|+..+....+++.+|++|.+. .+..... .-..+.+.+++.++..+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 45568889999754 44666666666555677777777654 4443321 235789999999999988876531
Q ss_pred CCchHHHHHHHHHHhCCCchh
Q 038826 364 PGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLa 384 (572)
. ....+...+..++|.|+.
T Consensus 181 ~--~~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 181 A--EISEILTALRINYGRPLL 199 (325)
T ss_pred c--ChHHHHHHHHHcCCCHHH
Confidence 1 112356778899999963
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.16 E-value=0.0013 Score=62.78 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=33.8
Q ss_pred ccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 203 LCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 203 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|..+-..-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4333344679999999999999999998886655556789998
No 157
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.14 E-value=0.0011 Score=64.27 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=35.3
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33444433334579999999999999999999886655556788987
No 158
>PRK07261 topology modulation protein; Provisional
Probab=97.10 E-value=0.0021 Score=59.41 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 159
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.10 E-value=0.0014 Score=66.29 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=55.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+-+.|+|..|+|||.||.++++.+...-..+.|+. + ..+...+....... ...+ ..+.++ +
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~------~~l~~~lk~~~~~~------~~~~-~l~~l~-~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----F------PEFIRELKNSISDG------SVKE-KIDAVK-E 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----H------HHHHHHHHHHHhcC------cHHH-HHHHhc-C
Confidence 356889999999999999999998655444456665 2 23344443333211 1112 222232 4
Q ss_pred ceEEEEecCCC--hhhhH--HHhcCC-CCC-CCCcEEEEEeC
Q 038826 290 NVCIILDKVDK--FGHSE--YLTGGL-SRF-GHGSRVIVTTR 325 (572)
Q Consensus 290 r~LlVLDdv~~--~~~~~--~l~~~~-~~~-~~gs~IIvTTR 325 (572)
-=||||||+.. ...|. .++..+ ... ..+-.+|+||-
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 55899999942 23332 233222 111 13445788876
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.00074 Score=68.87 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=28.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-+.++|.+|+|||+||.++++.+...-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999997655444567776
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.06 E-value=0.0014 Score=75.71 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=71.6
Q ss_pred CCcccccccccccccccccc-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..++|-+..++.+.+.+... ......+.++|+.|+|||+||+.+++.+-..-...+-++ ..+..+......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~- 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK- 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH-
Confidence 56889888888887766421 112346779999999999999999987543323333333 111111111111
Q ss_pred HHHHHHHhhCCCCcc-ccchHHHHHHHhhcCc-eEEEEecCCCh--hhhHHHhcCCCCC-----------CCCcEEEEEe
Q 038826 260 RDQIVSQILGESTVE-TSILPQCIKKRLQQMN-VCIILDKVDKF--GHSEYLTGGLSRF-----------GHGSRVIVTT 324 (572)
Q Consensus 260 ~~~il~~l~~~~~~~-~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~-----------~~gs~IIvTT 324 (572)
+.+..+.. .......+.+.++.++ .+++||+++.. +.++.|+..+..+ ..++-||+||
T Consensus 587 -------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 587 -------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred -------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 12222211 1111223455555555 58899999743 4455555544321 1345567776
Q ss_pred CC
Q 038826 325 RD 326 (572)
Q Consensus 325 R~ 326 (572)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 162
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.02 E-value=0.00045 Score=59.61 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=21.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 163
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.01 E-value=0.0014 Score=62.06 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=63.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEE-EeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCF-MANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w-v~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+|.|+|..|+||||++..+...+.......++ +.+-.+ ..... ...++.+. +.........+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E----~~~~~-~~~~i~q~--~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE----FVHES-KRSLINQR--EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc----ccccC-ccceeeec--ccCCCccCHHHHHHHHhcCC
Confidence 478999999999999999988876544443333 331100 00000 00011000 00000233556677778777
Q ss_pred ceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhh
Q 038826 290 NVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD 331 (572)
Q Consensus 290 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~ 331 (572)
+=++++|.+.+.+.+...+.... .|..++.|+-...+..
T Consensus 75 pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcHHH
Confidence 88999999988776665443322 4556777776655543
No 164
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.015 Score=58.91 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=60.6
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++-++|+|+++.. .....|+..+....+++.+|++|.+. .+..... .-..+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 34558899999744 45666666665555677777766654 4443322 23578999999999998886531 1
Q ss_pred CCchHHHHHHHHHHhCCCchhHHHH
Q 038826 364 PGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
. .+..++..++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999999976544
No 165
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.00 E-value=0.0016 Score=64.23 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=56.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhC--------CCCcc------c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILG--------ESTVE------T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~--------~~~~~------~ 275 (572)
-+.++|.|.+|+||||||+.+++.++.+|+..+++..+++ ....+.++.+.+...-.. ..++. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4579999999999999999999998878877676664433 233445555555432111 11110 0
Q ss_pred cchHHHHHHHh--h-cCceEEEEecCCCh
Q 038826 276 SILPQCIKKRL--Q-QMNVCIILDKVDKF 301 (572)
Q Consensus 276 ~~~~~~l~~~L--~-~kr~LlVLDdv~~~ 301 (572)
....-.+.+++ + ++.+|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11122344555 3 88999999999543
No 166
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.0027 Score=57.41 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++.|+|.+|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987655445667776
No 167
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.014 Score=59.96 Aligned_cols=91 Identities=9% Similarity=-0.035 Sum_probs=60.0
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++=++|+|+++.. ..-..|+..+.....++.+|++|.+. .+.... .....+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 45668999999744 45666666665555677777777654 444332 123467899999999988876532 1
Q ss_pred CCchHHHHHHHHHHhCCCchhH
Q 038826 364 PGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal 385 (572)
...+.+..++..++|.|...
T Consensus 182 --~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 --MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 11233678899999999643
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.00 E-value=0.00087 Score=77.09 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCccccccccccccccccc-------cCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-------RLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..++|-+..++.+.+.+.. +.....++.++|++|+|||.||+.++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4678888888888776642 1222457899999999999999999887543
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0023 Score=65.42 Aligned_cols=137 Identities=17% Similarity=0.134 Sum_probs=74.2
Q ss_pred ccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc---------------------ceEEEEeec
Q 038826 189 LVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF---------------------EGWCFMANV 247 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~wv~~~ 247 (572)
++|-+....++..+..........+.++|++|+||||+|.++++.+.... +.+..+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec--
Confidence 44555555555555553322234589999999999999999999755332 2233333
Q ss_pred cccccccc---HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE
Q 038826 248 REESKRVE---LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV 322 (572)
Q Consensus 248 ~~~s~~~~---~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv 322 (572)
.+.... ..+..+.+........ ..++.-++++|+++.. +....++..+......+.+|+
T Consensus 81 --~s~~~~~~i~~~~vr~~~~~~~~~~--------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 81 --PSDLRKIDIIVEQVRELAEFLSESP--------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred --ccccCCCcchHHHHHHHHHHhccCC--------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 222111 1222222222211110 0245679999999854 335555555555557888888
Q ss_pred EeCCc-hhhhhcC-CceEEEecC
Q 038826 323 TTRDK-KVLDKYG-VDYVYKVEG 343 (572)
Q Consensus 323 TTR~~-~v~~~~~-~~~~~~l~~ 343 (572)
+|... .+..... ....+.+.+
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EcCChhhccchhhhcceeeecCC
Confidence 87743 3332221 223555655
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.98 E-value=0.0038 Score=57.10 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=61.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc--------------------ccceEEEEeecccccccccHHHHHHHHHHHhhC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS--------------------QFEGWCFMANVREESKRVELVHLRDQIVSQILG 269 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~ 269 (572)
...+.++|..|+||+++|..+++.+-. .++...|+.... ........++. .+...+..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~~~~i~i~~ir-~i~~~~~~ 96 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-KKKSIKIDQIR-EIIEFLSL 96 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT-SSSSBSHHHHH-HHHHHCTS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc-ccchhhHHHHH-HHHHHHHH
Confidence 457889999999999999999885322 123334443000 00011222222 22222211
Q ss_pred CCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCchh-hhhc-CCceEEEecCCC
Q 038826 270 ESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKV-LDKY-GVDYVYKVEGFN 345 (572)
Q Consensus 270 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~v-~~~~-~~~~~~~l~~L~ 345 (572)
.. ..++.=++|+||++.. +....|+..+.....++++|++|.+..- .... .....+.+.+|+
T Consensus 97 ~~--------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 97 SP--------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S---------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred HH--------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 11 1234568999999753 4566666555555578999988887643 2221 122456666653
No 171
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.98 E-value=0.12 Score=53.73 Aligned_cols=101 Identities=11% Similarity=-0.022 Sum_probs=63.8
Q ss_pred ceEEEEecCCCh-----------hhhHHHhcCCCCCCCCcEEEEEeCCchhhhh----c--CCceEEEecCCChhhHHHH
Q 038826 290 NVCIILDKVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK----Y--GVDYVYKVEGFNYRESLEI 352 (572)
Q Consensus 290 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~L 352 (572)
+-+||+||.... .+|...+.. .+=.+||++|-+...... + .+.+.+.+...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 669999998422 123333221 234578888877654432 2 2446778999999999999
Q ss_pred HHhhhhcCCCC-------------C-----CchHHHHHHHHHHhCCCchhHHHHhhHhcC
Q 038826 353 FCYYAFRQNHC-------------P-----GDLLVLSDNVVDYANGSSLALNVLRSSFYR 394 (572)
Q Consensus 353 f~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 394 (572)
...+.-..... . .....-....+..+||=-+-|..+++.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 88776332110 0 123334566778888888888888887754
No 172
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.96 E-value=0.0018 Score=68.57 Aligned_cols=45 Identities=18% Similarity=0.022 Sum_probs=38.0
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++||++.++.+...+..+ .-|.|.|.+|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 46899999999888777654 3588999999999999999998654
No 173
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0026 Score=65.27 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=60.3
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-ceE-EEEeecccccccccHHHHHHHHHHHhhCCCCcc-
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-EGW-CFMANVREESKRVELVHLRDQIVSQILGESTVE- 274 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~-~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~- 274 (572)
++.+.+..-. .-+.++|+|.+|+|||||++.+++.+..+. +.. +|+. + ......+.++.+.+...+.....+.
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l-I--gER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL-I--DERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE-e--cCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3555555322 235678999999999999999999776554 332 3333 2 1234577788888877665433211
Q ss_pred ------ccchHHHHHHHh--hcCceEEEEecCCC
Q 038826 275 ------TSILPQCIKKRL--QQMNVCIILDKVDK 300 (572)
Q Consensus 275 ------~~~~~~~l~~~L--~~kr~LlVLDdv~~ 300 (572)
.........+++ .+++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111111222222 57899999999953
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0023 Score=68.14 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCccccccccccccccccccC----------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRL----------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
..+=|.++.+.++.+++..-. ...+-|.++|++|+|||.||+++++...--| +. ++
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----is----- 255 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----IS----- 255 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ec-----
Confidence 467788988888877664311 2367789999999999999999999765433 22 11
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh-------------hhHHHhcCCCCC------CCC
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG-------------HSEYLTGGLSRF------GHG 317 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~------~~g 317 (572)
.-.+++.+.+... +.+-+...+.....++++++|+++-.. .+.+|+..+... +.+
T Consensus 256 ---ApeivSGvSGESE---kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 256 ---APEIVSGVSGESE---KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---chhhhcccCcccH---HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 1123333333321 122223333445679999999997321 133344333221 223
Q ss_pred cEEEE-EeCCchhh---hhcC-CceEEEecCCChhhHHHHHHhhh
Q 038826 318 SRVIV-TTRDKKVL---DKYG-VDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 318 s~IIv-TTR~~~v~---~~~~-~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
--||- |+|-..+- ...| .++.+.+.--++..-.+++...+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 22332 55544332 2222 45677787777776666666554
No 175
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.93 E-value=0.054 Score=58.88 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=68.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc---cc-----eEEEEeecc-ccc----------ccc-c-HHHHHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ---FE-----GWCFMANVR-EES----------KRV-E-LVHLRDQIVSQIL 268 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-----~~~wv~~~~-~~s----------~~~-~-~~~l~~~il~~l~ 268 (572)
-..|+|+|..|+|||||.+.+....... .. .+.++.--. ... ..+ + ...-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3579999999999999999996643222 10 112222000 000 000 1 0233333343333
Q ss_pred CCCCcc---------ccchHHHHHHHhhcCceEEEEecCCCh---hhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCc
Q 038826 269 GESTVE---------TSILPQCIKKRLQQMNVCIILDKVDKF---GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVD 336 (572)
Q Consensus 269 ~~~~~~---------~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~ 336 (572)
-..+.. .+...-.+...+-.++-+||||.=.|. +..+.|...+..+ +|+ ||+.|-++...... +.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~v-a~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRV-AT 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhh-cc
Confidence 222211 122222344555678889999976533 3333333333322 254 88889999887776 35
Q ss_pred eEEEecC
Q 038826 337 YVYKVEG 343 (572)
Q Consensus 337 ~~~~l~~ 343 (572)
+++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 6666664
No 176
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.029 Score=57.51 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=57.9
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCC-chhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++-++|+|+++.. .....|+..+....+++.+|++|.+ ..+.... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34558889999744 4566676666655567766665555 4444332 223678999999999998887641 1
Q ss_pred CCchHHHHHHHHHHhCCCchhHH
Q 038826 364 PGDLLVLSDNVVDYANGSSLALN 386 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~ 386 (572)
. . ...++..++|.|+...
T Consensus 206 ~-~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 A-D----ADALLAEAGGAPLAAL 223 (342)
T ss_pred C-h----HHHHHHHcCCCHHHHH
Confidence 1 1 2335778899997543
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.88 E-value=0.011 Score=67.46 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=85.2
Q ss_pred CCcccccccccccccccccc----CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVR----LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
...+|.++..+.|.++|... .....++.++|++|+||||+|+.++......|-.+-+ +...+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-------~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-------GGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-------CCCCCHHHhccc
Confidence 46899999999998887632 1234689999999999999999999876554432221 111111111100
Q ss_pred HHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChhh------hHHHhcCCCC---------------CCCCcEEE
Q 038826 263 IVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFGH------SEYLTGGLSR---------------FGHGSRVI 321 (572)
Q Consensus 263 il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~---------------~~~gs~II 321 (572)
- ....+.. .......+... ...+-+++||.++.... ...|+..+.. .-.+.-+|
T Consensus 395 ~-~~~~g~~---~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 395 R-RTYIGSM---PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred h-hccCCCC---CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0 0000000 11222222221 22345789999963321 2334333221 01234444
Q ss_pred EEeCCchhhhh-cCCceEEEecCCChhhHHHHHHhhh
Q 038826 322 VTTRDKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 322 vTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.|+....+... .+...++++.+++.+|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55543322111 1123578899999999888877665
No 178
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0035 Score=60.62 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.9
Q ss_pred ccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc------ceEEEEe
Q 038826 201 SLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF------EGWCFMA 245 (572)
Q Consensus 201 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~ 245 (572)
.+|..+-..-.++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34433333457999999999999999999887544344 5678887
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0016 Score=70.66 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=88.0
Q ss_pred CCccccccccccccccccccC----CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRL----PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
.+=+|.++-.++|.+.|.-.. -+-++++++|++|||||.|++.+++-+...|-... +-.++.. ..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDE---AE------- 391 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDE---AE------- 391 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccH---HH-------
Confidence 456899999999998886431 23579999999999999999999998777664311 1111111 11
Q ss_pred HHHHhhCCCCccccchHHHHHHH---hhcCceEEEEecCCChh------hhHHHhcCCCC------------CC-CCcE-
Q 038826 263 IVSQILGESTVETSILPQCIKKR---LQQMNVCIILDKVDKFG------HSEYLTGGLSR------------FG-HGSR- 319 (572)
Q Consensus 263 il~~l~~~~~~~~~~~~~~l~~~---L~~kr~LlVLDdv~~~~------~~~~l~~~~~~------------~~-~gs~- 319 (572)
+-++...........+-+. .+.++-|++||.++... --.+|+..++. .. .=|.
T Consensus 392 ----IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 392 ----IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 1111111111222222222 24467899999997331 11122221110 00 0133
Q ss_pred EEEEeCCc-h-h-hhhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 320 VIVTTRDK-K-V-LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 320 IIvTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
+.|||-|. + + ...+...+++++.+-+++|-.+.-.++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44555543 1 1 1222344789999999999888877765
No 180
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.82 E-value=0.0044 Score=56.03 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=59.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHh-----hC------CCC-cc---c
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQI-----LG------EST-VE---T 275 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l-----~~------~~~-~~---~ 275 (572)
..|-|++-.|.||||+|...+-+...+=..+.++.-.+. ....+-..+++.+ ..+ +. ... +. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888889999999999888765444333344321111 1122333333333 000 00 000 00 1
Q ss_pred cchHHHHHHHhhc-CceEEEEecCCCh-----hhhHHHhcCCCCCCCCcEEEEEeCCch
Q 038826 276 SILPQCIKKRLQQ-MNVCIILDKVDKF-----GHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (572)
Q Consensus 276 ~~~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IIvTTR~~~ 328 (572)
....+..++.+.. .-=|||||++-.. -..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1223334444444 4459999998422 122333333333335778999999864
No 181
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.80 E-value=0.0018 Score=65.89 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=26.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
.++.++|||++|+|||.+|+.+++.....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 467899999999999999999999876553
No 182
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.0032 Score=60.56 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=34.6
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|..+|..+-..-.++.|+|.+|+||||||.+++.....+-..++|+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444433334678999999999999999999887654445677886
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0012 Score=58.78 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=28.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-cce-EEEEeec
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-FEG-WCFMANV 247 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~wv~~~ 247 (572)
--|+|+||+|+||||+++.+++.++.. |.. .+|..-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 458999999999999999999987665 664 3444433
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0057 Score=68.21 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCccccccccccccccccc-------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCV-------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..++|-+..+..+.+.+.. ++.........|+.|||||-||++++..+-+.=+..+-++ .|+ + .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----MSE-y----~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----MSE-Y----M 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----hHH-H----H
Confidence 4688888888877666543 2233567788999999999999999997543323334443 222 1 1
Q ss_pred HHHHHHHhhCCCCcc-ccchHHHHHHHhhcCce-EEEEecCC--ChhhhHHHhcCCCC
Q 038826 260 RDQIVSQILGESTVE-TSILPQCIKKRLQQMNV-CIILDKVD--KFGHSEYLTGGLSR 313 (572)
Q Consensus 260 ~~~il~~l~~~~~~~-~~~~~~~l~~~L~~kr~-LlVLDdv~--~~~~~~~l~~~~~~ 313 (572)
-+.-++.+-+..+.. ..+-...|-+..+.++| +|.||.|. +++.++-|+..+..
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 223334444555532 22224456677778877 77899996 45566666665543
No 185
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.74 E-value=0.012 Score=65.98 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=71.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
+-|.|+|.+|+|||++|+.++......| +.+. .+ .+.. ...+.. .......+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~~------~~~~----~~~g~~---~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----GS------DFVE----MFVGVG---ASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----hH------HhHH----hhhccc---HHHHHHHHHHHHhcCC
Confidence 3488999999999999999998765443 1222 11 1110 000100 1111222233334568
Q ss_pred eEEEEecCCChh----------------hhHHHhcCCCCC--CCCcEEEEEeCCchhhhh-----cCCceEEEecCCChh
Q 038826 291 VCIILDKVDKFG----------------HSEYLTGGLSRF--GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYR 347 (572)
Q Consensus 291 ~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ 347 (572)
++|++|+++... .+..++..+..+ ..+.-+|.||...+.... -..+..+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999996431 133343333322 234445557765543221 124567888888888
Q ss_pred hHHHHHHhhhh
Q 038826 348 ESLEIFCYYAF 358 (572)
Q Consensus 348 ea~~Lf~~~a~ 358 (572)
+-.+++..+.-
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888887653
No 186
>PRK04296 thymidine kinase; Provisional
Probab=96.74 E-value=0.0019 Score=60.69 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=59.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc----ccchHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE----TSILPQCIKKRL 286 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~----~~~~~~~l~~~L 286 (572)
.++.|+|..|.||||+|..++.+...+...++.+... ...... ...++..++...... ..+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 4678999999999999999998765554444444200 011111 112333332211110 1223333333 2
Q ss_pred hcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCCch
Q 038826 287 QQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (572)
Q Consensus 287 ~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~~~ 328 (572)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 33556999999953 333444443322 35788999999854
No 187
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.71 E-value=0.0026 Score=58.51 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=46.7
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-ccchHHHHHHHhhc--C
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-TSILPQCIKKRLQQ--M 289 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-~~~~~~~l~~~L~~--k 289 (572)
+.|.|.+|+|||++|.+++.. ....++++. .+...+. ++.+.+........... ..+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999999865 223566665 3333433 45555555433332222 22333445555532 2
Q ss_pred ceEEEEecC
Q 038826 290 NVCIILDKV 298 (572)
Q Consensus 290 r~LlVLDdv 298 (572)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347899987
No 188
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.008 Score=53.75 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=57.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
-.+++|.|..|.|||||++.+...... ..+.+++.....+.--+. +. . .+...-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~-----------lS---~--G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ-----------LS---G--GEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc-----------CC---H--HHHHHHHHHHHHhcC
Confidence 468999999999999999999875432 344555542111111010 00 0 111222345556667
Q ss_pred ceEEEEecCC---ChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhh
Q 038826 290 NVCIILDKVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK 332 (572)
Q Consensus 290 r~LlVLDdv~---~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~ 332 (572)
+-+++||+-. |....+.+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7899999884 333223332222211 2468888877655543
No 189
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.71 E-value=0.0015 Score=60.08 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=45.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-----ccchHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-----TSILPQCIKKRL 286 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-----~~~~~~~l~~~L 286 (572)
++.|.|.+|+||||+|..++.+... ..+++. +....-.++.+.+........... ...+...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 5889999999999999999876432 234443 222334456666655544333221 223444444433
Q ss_pred hcCceEEEEecC
Q 038826 287 QQMNVCIILDKV 298 (572)
Q Consensus 287 ~~kr~LlVLDdv 298 (572)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337888887
No 190
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.69 E-value=0.006 Score=54.20 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=21.2
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 191
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.011 Score=63.69 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=73.6
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHH-HHHh
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCI-KKRL 286 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l-~~~L 286 (572)
+..+-|..+|+||+|||++|+++++.-...|-.+ .. ..+++...++. +.....+ ++.-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg--------pEL~sk~vGeS----Er~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG--------PELFSKYVGES----ERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC--------HHHHHHhcCch----HHHHHHHHHHHh
Confidence 4577899999999999999999999766665332 00 01111111111 1111111 1222
Q ss_pred hcCceEEEEecCCChh-------------hhHHHhcCCCCCCCCcEEEE---EeCCchhhhh-c---CCceEEEecCCCh
Q 038826 287 QQMNVCIILDKVDKFG-------------HSEYLTGGLSRFGHGSRVIV---TTRDKKVLDK-Y---GVDYVYKVEGFNY 346 (572)
Q Consensus 287 ~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~IIv---TTR~~~v~~~-~---~~~~~~~l~~L~~ 346 (572)
+-.+.+|.||.++... .+..|+..++-......|+| |-|...+-.. + ..+..+.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 3346888888886321 24445554443333323333 3343333111 1 2567788888888
Q ss_pred hhHHHHHHhhhhc
Q 038826 347 RESLEIFCYYAFR 359 (572)
Q Consensus 347 ~ea~~Lf~~~a~~ 359 (572)
+.-.++|..++-+
T Consensus 605 ~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 605 EARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHHhc
Confidence 8889999988743
No 192
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.023 Score=61.82 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=82.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
..-|.|.|..|+|||+||+++++.+... +-.+.+++ +.. .....+.++++.+- ....+.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~-l~~~~~e~iQk~l~---------------~vfse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CST-LDGSSLEKIQKFLN---------------NVFSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chh-ccchhHHHHHHHHH---------------HHHHHHHhh
Confidence 4568899999999999999999976533 33444444 111 11223444443332 224455677
Q ss_pred CceEEEEecCCChh--------h-------hHHHh----cCCCCCCCCc--EEEEEeCCchhh-----hhcCCceEEEec
Q 038826 289 MNVCIILDKVDKFG--------H-------SEYLT----GGLSRFGHGS--RVIVTTRDKKVL-----DKYGVDYVYKVE 342 (572)
Q Consensus 289 kr~LlVLDdv~~~~--------~-------~~~l~----~~~~~~~~gs--~IIvTTR~~~v~-----~~~~~~~~~~l~ 342 (572)
.+-+|||||++... + +..++ ..+. ..+. .+|.|.....-. ...-...+..++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 89999999996211 1 11111 1111 1233 344454432221 111234567888
Q ss_pred CCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC-chhHHHH
Q 038826 343 GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVL 388 (572)
Q Consensus 343 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 388 (572)
.+...+-.++++... ...... ...+...-+..+|+|. |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 888887777776543 211111 1112223367777663 5444443
No 193
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.65 E-value=0.0022 Score=73.46 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCcccccccccccccccccc----CCCceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR----LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
...+|.+...+.+.+++... .....++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35778888888877765421 12345799999999999999999999876554
No 194
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.65 E-value=0.0073 Score=58.77 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=32.4
Q ss_pred cccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc------cceEEEEe
Q 038826 200 NSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ------FEGWCFMA 245 (572)
Q Consensus 200 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~ 245 (572)
...|..+-..-.++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 9 DELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred HhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 33444333345789999999999999999987543211 25788997
No 195
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.65 E-value=0.024 Score=60.10 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+.+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998866544
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.63 E-value=0.0023 Score=58.81 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=32.5
Q ss_pred ccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 189 LVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+||.+..++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777777777776654333356779999999999999999984
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.62 E-value=0.0049 Score=58.24 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=54.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh--cccccceEEEEeeccccccc--ccHHHHH-------HHHHHHhhCCCCccccch
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ--ISSQFEGWCFMANVREESKR--VELVHLR-------DQIVSQILGESTVETSIL 278 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~wv~~~~~~s~~--~~~~~l~-------~~il~~l~~~~~~~~~~~ 278 (572)
..++.+.|++|.|||.||.+.+-+ ....|+.++++...-++.+. +-...+. ..+...+..-.. .+..
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~--~~~~ 96 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFG--KEKL 96 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS---TTCH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhC--hHhH
Confidence 458999999999999999888763 24678888887644222111 1111111 111111111000 0111
Q ss_pred HHHHH---------HHhhcC---ceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCC
Q 038826 279 PQCIK---------KRLQQM---NVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 279 ~~~l~---------~~L~~k---r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~ 326 (572)
...+. ..++++ +.+||+|++.+ ..++..++... +.||++|++--.
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 11111 123443 56999999954 46788877654 579999998653
No 198
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0045 Score=70.09 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCcccccccccccccccccc-------CCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-------LPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++|-+..++.|...+... ......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789888888887776521 11245789999999999999999998764
No 199
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.016 Score=55.26 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=73.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh--
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-- 286 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-- 286 (572)
+++-+.++|++|.|||-||+++++.. .+.|+. +|.. ++.+..+ .+..+.+++..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-----~c~fir----vsgs----elvqk~i-----------gegsrmvrelfvm 235 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VSGS----ELVQKYI-----------GEGSRMVRELFVM 235 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----echH----HHHHHHh-----------hhhHHHHHHHHHH
Confidence 45678899999999999999998743 344555 4331 2222221 12233333332
Q ss_pred --hcCceEEEEecCCChh----------------hhHHHhcCCCCC--CCCcEEEEEeCCchhhhh-----cCCceEEEe
Q 038826 287 --QQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--GHGSRVIVTTRDKKVLDK-----YGVDYVYKV 341 (572)
Q Consensus 287 --~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~~-----~~~~~~~~l 341 (572)
.+.+-+|..|.+++.. ..-.++..+..+ ..+.+||..|-.-+++.. -..+..++.
T Consensus 236 arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkief 315 (404)
T KOG0728|consen 236 AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 315 (404)
T ss_pred HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccC
Confidence 3567889999986431 012234444433 356788876654444322 224566778
Q ss_pred cCCChhhHHHHHHhhh
Q 038826 342 EGFNYRESLEIFCYYA 357 (572)
Q Consensus 342 ~~L~~~ea~~Lf~~~a 357 (572)
++-+++.-.+++.-+.
T Consensus 316 p~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 316 PPPNEEARLDILKIHS 331 (404)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 8877777777777554
No 200
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.60 E-value=0.013 Score=54.58 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=66.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHH------HHHHHHHHhhCCC-----C-cc--c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVH------LRDQIVSQILGES-----T-VE--T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~------l~~~il~~l~~~~-----~-~~--~ 275 (572)
-.+++|.|..|.|||||.+.++..... ..+.+++.+. .+.. .+... ...+++..++... . .. .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~-~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGK-DLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCE-ECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 458999999999999999999875433 3445555421 1111 11111 1111333332211 1 11 2
Q ss_pred cchHHHHHHHhhcCceEEEEecCC---ChhhhHHHhcCCCCC-CC-CcEEEEEeCCchhhhhcCCceEEEe
Q 038826 276 SILPQCIKKRLQQMNVCIILDKVD---KFGHSEYLTGGLSRF-GH-GSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 276 ~~~~~~l~~~L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~-gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
+...-.+.+.+...+-+++||+-. |....+.+...+... .. +..||++|.+......+ .+.++.+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 222233555667788899999984 222233332222211 12 56788888876654332 2344443
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.0054 Score=57.80 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-cc-ceEEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QF-EGWCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f-~~~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
.++||-++-++.+.-.-.++ +.+-+.|.||+|+||||-+..+++.+-+ .| +++.=++ +|+..++.-+...|-
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRNKIK 100 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHHHHH
Confidence 36888888888776555544 4677889999999999999999986433 33 3333343 444444333333322
Q ss_pred HHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCChh
Q 038826 265 SQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKFG 302 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~ 302 (572)
......- .| .++.-.+|||.+++..
T Consensus 101 ~FAQ~kv-------------~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 101 MFAQKKV-------------TLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHhhc-------------cCCCCceeEEEeeccchhh
Confidence 1111100 01 2445588999998763
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.56 E-value=0.00093 Score=68.14 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=41.2
Q ss_pred CccccccccccccccccccC----CCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 188 DLVGLDSHIQRNNSLLCVRL----PDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.++|.++.++++.+++.... ...++++|+|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999886532 23678999999999999999999986543
No 203
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.52 E-value=0.0051 Score=58.06 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=35.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILG 269 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~ 269 (572)
+++|.++|+.|+||||.+..++.+...+-..+..++. .....+..+-++...+.++-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~---D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA---DTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE---STSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC---CCCCccHHHHHHHHHHHhcc
Confidence 4689999999999999998888765544334555551 01122334444555555543
No 204
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.02 Score=61.21 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=77.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-hc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-QQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~ 288 (572)
..-|.+||++|+|||-||++++|.-+-+|-. +- .+ .++....++ .+..++.+.++- ..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFis---------VK-GP-------ELlNkYVGE----SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFIS---------VK-GP-------ELLNKYVGE----SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEe---------ec-CH-------HHHHHHhhh----HHHHHHHHHHHhhcC
Confidence 4468899999999999999999987776532 11 11 122221121 122333333333 45
Q ss_pred CceEEEEecCCCh-------------hhhHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCCceEEEecCCChhh
Q 038826 289 MNVCIILDKVDKF-------------GHSEYLTGGLSRF--GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRE 348 (572)
Q Consensus 289 kr~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~e 348 (572)
.+++|.||.++.. ..+.+|+..+.-. ..|--||-.|-.+++.. --..+...-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 6899999999632 1245565555422 24556666554444422 11245677788888999
Q ss_pred HHHHHHhhhh
Q 038826 349 SLEIFCYYAF 358 (572)
Q Consensus 349 a~~Lf~~~a~ 358 (572)
-.++++...-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999987764
No 205
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.02 Score=58.56 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=48.1
Q ss_pred CceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhhhcC-CceEEEecCCChhhHHHHHHhhhhcCCCCC
Q 038826 289 MNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKYG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCP 364 (572)
Q Consensus 289 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 364 (572)
++-++|+|+++.. .....++..+.....++.+|++|.+.. +..... ....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 3445566888643 333444433333334566777777653 332221 23578899999999988886531 11
Q ss_pred CchHHHHHHHHHHhCCCchhH
Q 038826 365 GDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 365 ~~~~~~~~~i~~~~~GlPLal 385 (572)
.. ...+..++|-|+..
T Consensus 188 -~~----~~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 -EP----EERLAFHSGAPLFD 203 (325)
T ss_pred -cH----HHHHHHhCCChhhh
Confidence 11 11235688988643
No 206
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.49 E-value=0.0092 Score=62.01 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=55.4
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc---
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE--- 274 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--- 274 (572)
++...|..+-..-.++.|.|.+|+|||||+.+++......-..++|+. .. ....++... +..++....+.
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs----~E--Es~~qi~~R-a~rlg~~~~~l~l~ 142 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS----GE--ESPEQIKLR-ADRLGISTENLYLL 142 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----CC--cCHHHHHHH-HHHcCCCcccEEEE
Confidence 344445443334568999999999999999999987655545677876 21 122332221 23333222222
Q ss_pred ccchHHHHHHHh-hcCceEEEEecCC
Q 038826 275 TSILPQCIKKRL-QQMNVCIILDKVD 299 (572)
Q Consensus 275 ~~~~~~~l~~~L-~~kr~LlVLDdv~ 299 (572)
.+...+.+.+.+ ..+.-+||+|.+.
T Consensus 143 ~e~~le~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 143 AETNLEDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred ccCcHHHHHHHHHhcCCcEEEEcchH
Confidence 222334444444 3467789999983
No 207
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0028 Score=58.76 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=31.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...+|.+.|+.|+||||+|+.+++.+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999998877777777774
No 208
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.0058 Score=61.92 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=53.4
Q ss_pred cccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC-------
Q 038826 199 NNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE------- 270 (572)
Q Consensus 199 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~------- 270 (572)
|..+|. .+-..-+++-|+|.+|+||||||.+++......-..++|++ ....++.. .+..++..
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId----~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID----AEHALDPV-----YAKKLGVDLDNLLIS 113 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC----ccccHHHH-----HHHHcCCCHHHheec
Confidence 333444 33334678999999999999999998876555556678887 33333322 22222221
Q ss_pred CCccccchHHHHHHHhh-cCceEEEEecCC
Q 038826 271 STVETSILPQCIKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 271 ~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~ 299 (572)
.+...++....+...++ +..-|||+|-|-
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 11112333444444443 356689999873
No 209
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.43 E-value=0.018 Score=55.36 Aligned_cols=171 Identities=17% Similarity=0.140 Sum_probs=94.6
Q ss_pred CCccccccccc---cccccccccC----CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQ---RNNSLLCVRL----PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~---~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
+++||-+.... -|.+.|..+. ..++-|..+|++|.|||.+|+++++..+.-|- -+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk----------a--- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK----------A--- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec----------h---
Confidence 46777665543 2344554432 34788999999999999999999997554321 121 0
Q ss_pred HHHHHHHhhCCCCccccchHHHHH-HHhhcCceEEEEecCCCh--------------hhhHHHhcCCCC--CCCCcEEEE
Q 038826 260 RDQIVSQILGESTVETSILPQCIK-KRLQQMNVCIILDKVDKF--------------GHSEYLTGGLSR--FGHGSRVIV 322 (572)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~--~~~gs~IIv 322 (572)
.+++....+. ....+..+- +.-+.-++++.+|.++-. +....|+..+.. .+.|...|-
T Consensus 185 -t~liGehVGd----gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 185 -TELIGEHVGD----GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHHHhhh----HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1122111111 111122222 222446899999988632 234555544442 234655566
Q ss_pred EeCCchhhhhc---CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 323 TTRDKKVLDKY---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 323 TTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
.|-+..++... ...+.++...-+.+|-.+++..++-.-.-+. ..-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 66655554321 2345677777888999999988873322111 11145566666664
No 210
>PRK09354 recA recombinase A; Provisional
Probab=96.42 E-value=0.0061 Score=62.30 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred cccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCC------
Q 038826 199 NNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGES------ 271 (572)
Q Consensus 199 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~------ 271 (572)
|..+|. .+-..-+++-|+|.+|+||||||.+++......-..++|+. ....++.. .+..++...
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId----~E~s~~~~-----~a~~lGvdld~lli~ 118 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID----AEHALDPV-----YAKKLGVDIDNLLVS 118 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchHHH-----HHHHcCCCHHHeEEe
Confidence 334454 33344678999999999999999998876555556778997 33333331 233332221
Q ss_pred -CccccchHHHHHHHhh-cCceEEEEecCC
Q 038826 272 -TVETSILPQCIKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 272 -~~~~~~~~~~l~~~L~-~kr~LlVLDdv~ 299 (572)
++..++....+...++ +..-|||+|-|-
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1112333444444443 356689999984
No 211
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.018 Score=62.71 Aligned_cols=130 Identities=24% Similarity=0.183 Sum_probs=75.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
..+.+.++|++|.|||.||+++++.....|-.+-.-. ++....+.. ............+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~-----------------l~sk~vGes---ek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE-----------------LLSKWVGES---EKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH-----------------HhccccchH---HHHHHHHHHHHHcC
Confidence 3568999999999999999999997666554322111 111111110 11122223333356
Q ss_pred CceEEEEecCCCh-------------hhhHHHhcCCCCCC--CCcEEEEEeCCchhhhh-----cCCceEEEecCCChhh
Q 038826 289 MNVCIILDKVDKF-------------GHSEYLTGGLSRFG--HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRE 348 (572)
Q Consensus 289 kr~LlVLDdv~~~-------------~~~~~l~~~~~~~~--~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~e 348 (572)
.++.|.+|.++.. .....++..+.... .+..||-||-....... ...+..+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 7899999999622 12334444333222 23344555544433321 1345688899999999
Q ss_pred HHHHHHhhhh
Q 038826 349 SLEIFCYYAF 358 (572)
Q Consensus 349 a~~Lf~~~a~ 358 (572)
..+.|..+.-
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 212
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.011 Score=63.28 Aligned_cols=183 Identities=13% Similarity=0.049 Sum_probs=103.3
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQ 266 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~ 266 (572)
.++||-+.....|...+..+. -..-....|.-|+||||+|+-++..+-..=. . ...+.+.-...+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~----~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG-----P----TAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-----C----CCCcchhhhhhHhhhcC
Confidence 577999998888888887653 1345668999999999999999884311100 0 11111111222222211
Q ss_pred hhCCCCcc---ccchHHHHHHHh--------hcCceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhh
Q 038826 267 ILGESTVE---TSILPQCIKKRL--------QQMNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDK 332 (572)
Q Consensus 267 l~~~~~~~---~~~~~~~l~~~L--------~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~ 332 (572)
-...--++ ....++.+++.. .++.=+.|+|.|. +...+..|+..+.........|+.|.+. .+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00000000 222333333333 2445588999995 5567888887776555566666655554 33322
Q ss_pred -cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 333 -YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
......|.++.++.++-...+...+-... -.-..+....|++..+|.
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGS 213 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCC
Confidence 22336789999999988777776653222 122334455666666663
No 213
>PRK06217 hypothetical protein; Validated
Probab=96.39 E-value=0.017 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.280 Sum_probs=21.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|.|.+|+||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=0.0099 Score=64.76 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=49.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh--
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-- 286 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-- 286 (572)
.-++..++|++|.||||||.-++++-. |. ++=|+ +|+.-....+-..|...+..+.. +
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~-------------l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSV-------------LDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhccc-------------ccc
Confidence 468999999999999999999998632 32 33344 56655666665555554433321 2
Q ss_pred hcCceEEEEecCCCh
Q 038826 287 QQMNVCIILDKVDKF 301 (572)
Q Consensus 287 ~~kr~LlVLDdv~~~ 301 (572)
.+++..||+|.++-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 257889999999744
No 215
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.38 E-value=0.0069 Score=59.00 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=33.3
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+..+|..+-..-.++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 33444444344679999999999999999998764333445677887
No 216
>PRK07667 uridine kinase; Provisional
Probab=96.38 E-value=0.0026 Score=59.97 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=28.6
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+.+.+........+|+|.|.+|+||||+|..+...+..
T Consensus 6 ~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 6 LINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444433344679999999999999999999987654
No 217
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.36 E-value=0.00086 Score=59.57 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=30.9
Q ss_pred cccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 190 VGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 190 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
||....++++.+.+..-......|.|+|..|+||+++|+.+++.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 466666666666665433334568899999999999999888743
No 218
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.35 E-value=0.0065 Score=61.54 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=52.5
Q ss_pred cccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCc------
Q 038826 201 SLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTV------ 273 (572)
Q Consensus 201 ~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~------ 273 (572)
.+|. .+-..-+++-|+|.+|+||||||.+++......-..++|++ .....+.. .+..++....+
T Consensus 45 ~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId----~E~~~~~~-----~a~~lGvd~~~l~v~~p 115 (321)
T TIGR02012 45 LALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID----AEHALDPV-----YARKLGVDIDNLLVSQP 115 (321)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc----ccchhHHH-----HHHHcCCCHHHeEEecC
Confidence 3443 33344679999999999999999998876554455677887 33322221 22333221111
Q ss_pred -cccchHHHHHHHhh-cCceEEEEecCC
Q 038826 274 -ETSILPQCIKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 274 -~~~~~~~~l~~~L~-~kr~LlVLDdv~ 299 (572)
..++....+...++ +..-+||+|.|.
T Consensus 116 ~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 116 DTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred CCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 12333444444443 456799999984
No 219
>PRK06696 uridine kinase; Validated
Probab=96.34 E-value=0.0021 Score=62.20 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=24.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+|+|.|.+|+||||||+.++..+..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987654
No 220
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.34 E-value=0.0027 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 221
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.33 E-value=0.02 Score=57.06 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=92.9
Q ss_pred CCCccccccccccccccccccC--CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccc--cccccHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRL--PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREE--SKRVELVHLRD 261 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~--s~~~~~~~l~~ 261 (572)
-..++|-.++.+.+..++.... .+..-|.|+|+.|.|||+|.-....+. ..|.-...+...... ++...+..+.+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 3579999999999998886521 234568899999999999987666542 222222222211111 12223344444
Q ss_pred HHHHHhhCCCCcc--ccchHHHHHHHhhc------CceEEEEecCCChhh------hHHHhc-CCCCCCCCcEEEEEeCC
Q 038826 262 QIVSQILGESTVE--TSILPQCIKKRLQQ------MNVCIILDKVDKFGH------SEYLTG-GLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 262 ~il~~l~~~~~~~--~~~~~~~l~~~L~~------kr~LlVLDdv~~~~~------~~~l~~-~~~~~~~gs~IIvTTR~ 326 (572)
++..++....... ..+....+-..|+. -+++.|+|.++-... +-.+.. .-....|-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 4443333221111 23334444445532 368899998863211 111111 11123456777899997
Q ss_pred chh-------hhhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 327 KKV-------LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 327 ~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
... -....-..++-++.++-++-..++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 533 1222222356667788888888887654
No 222
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.016 Score=64.21 Aligned_cols=177 Identities=18% Similarity=0.121 Sum_probs=103.4
Q ss_pred CCCccccccc---cccccccccccC-------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSH---IQRNNSLLCVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~---~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
-.++.|-++. ++++++.|..+. .-++=+.++|++|.|||-||++++-.-. +-|+. +|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS-- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS-- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH--
Confidence 3567887764 455566666542 1266788999999999999999987532 22333 2211
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHH-HHHhhcCceEEEEecCCCh-----------------hhhHHHhcCCCCCCCC
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCI-KKRLQQMNVCIILDKVDKF-----------------GHSEYLTGGLSRFGHG 317 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~~~g 317 (572)
+++..+.+.. ...++.+ ...-.+.++++.+|+++.. ..+.+|+..++-+..+
T Consensus 379 ------EFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ------EFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ------HHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1111111111 1111112 1222346788888887522 1366676666655444
Q ss_pred cEE--EEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 318 SRV--IVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 318 s~I--IvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
..| |-+|...++... -..+..+.++.-+.....++|..|+-...-. .+..+++. |+...-|++=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 433 335555544332 2256778899889999999999887443322 34456666 888888887553
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.30 E-value=0.0088 Score=54.73 Aligned_cols=124 Identities=16% Similarity=0.055 Sum_probs=63.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc--ccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE--TSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--~~~~~~~l~~~L~ 287 (572)
-.+++|.|..|.|||||.+.++..... ..+.+++.+. .+.. .+.....+. .+.- ..+. .+...-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~~-~~~~~~~~~---~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVSF-ASPRDARRA---GIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECCc-CCHHHHHhc---CeEE-EEecCHHHHHHHHHHHHHh
Confidence 358999999999999999999875432 3455666421 1111 111111100 0000 0001 1222233455566
Q ss_pred cCceEEEEecCC---ChhhhHHHhcCCCCC-CCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 288 QMNVCIILDKVD---KFGHSEYLTGGLSRF-GHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 288 ~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
..+-+++||+.. |....+.+...+... ..|..||++|.+....... .+.++.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 778899999984 222222222222111 2366788888887644332 2344444
No 224
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.016 Score=53.77 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=62.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhh--CCC------------C-cc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQIL--GES------------T-VE 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~--~~~------------~-~~ 274 (572)
-.+++|.|..|.|||||++.++..... ..+.+++... .. ......+-..+. .+. . ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~------~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PV------SDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EH------HHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 358999999999999999999875432 2344444311 00 000000000000 000 0 11
Q ss_pred --ccchHHHHHHHhhcCceEEEEecCCC---hhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 275 --TSILPQCIKKRLQQMNVCIILDKVDK---FGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 275 --~~~~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
.+...-.+.+.+..++-+++||+..+ ....+.+...+.....+..||++|.+...... .++++.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12222334555667788999999853 22222222222111235678888888776643 4555554
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.24 E-value=0.089 Score=60.04 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=89.4
Q ss_pred cCcchHhHHHHHHHhhcc-cccc-eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEE
Q 038826 218 MSGISKTDIAGAIFNQIS-SQFE-GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIIL 295 (572)
Q Consensus 218 ~gGiGKTtLA~~~~~~~~-~~f~-~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVL 295 (572)
+.++||||+|..+++++- +.+. ..+-++ .|+..+...+. +++.......+ . -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~--~----------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKP--I----------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCC--c----------CCCCCEEEEE
Confidence 668999999999999863 3332 345555 44433444333 33333221111 0 0124579999
Q ss_pred ecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHH
Q 038826 296 DKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLS 371 (572)
Q Consensus 296 Ddv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 371 (572)
|+++.. +....|+..+......+++|++|.+. .+.... .....+.+.+++.++-.+.+...+-...- .-..+..
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~L 714 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGL 714 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHHH
Confidence 999855 45666666665545677777665543 333222 12368899999999888887766532221 1124567
Q ss_pred HHHHHHhCCCchhH
Q 038826 372 DNVVDYANGSSLAL 385 (572)
Q Consensus 372 ~~i~~~~~GlPLal 385 (572)
..|++.++|-+-..
T Consensus 715 ~~Ia~~s~GDlR~A 728 (846)
T PRK04132 715 QAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHcCCCHHHH
Confidence 89999999987544
No 226
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0077 Score=55.82 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
+.|.+.|.+|+||||+|++++..++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999865544
No 227
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.23 E-value=0.0048 Score=55.58 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=30.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.+|-|+|++|+||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999887777777776
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.21 E-value=0.021 Score=54.37 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=41.4
Q ss_pred CCCCccccccccccccccccc--cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEE
Q 038826 185 NSEDLVGLDSHIQRNNSLLCV--RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWC 242 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 242 (572)
.-..++|.|...+.+.+-... ......-|.+||.-|.|||.|.+++.+.+.......+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 345789988877766543221 1112456889999999999999999998877766533
No 229
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.21 E-value=0.0039 Score=53.76 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=21.9
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEE
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCF 243 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 243 (572)
|.|+|.+|+||||+|+.++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888875433
No 230
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.18 E-value=0.0037 Score=58.98 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+|+|.|.+|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999997654
No 231
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.15 E-value=0.0097 Score=58.72 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhh--cccc----cceEEEEeecccccccccHHHHHHHHHHH
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ--ISSQ----FEGWCFMANVREESKRVELVHLRDQIVSQ 266 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~----f~~~~wv~~~~~~s~~~~~~~l~~~il~~ 266 (572)
.|.+.|..+-..-.+.=|+|.+|+|||+||.+++-. +... =..++|++ ....+....+. +++..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERLQ-QIAER 95 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHHH-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHHH-HHhhc
Confidence 344444333223458889999999999999887643 2222 23588998 44456666554 44444
No 232
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.14 E-value=0.024 Score=62.35 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999888876544334467899999999999999998853
No 233
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.09 E-value=0.032 Score=51.14 Aligned_cols=124 Identities=18% Similarity=0.085 Sum_probs=63.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecc---ccccccc--HHHHHHHHHHHhhCCCCcc--ccchHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVR---EESKRVE--LVHLRDQIVSQILGESTVE--TSILPQCI 282 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~---~~s~~~~--~~~l~~~il~~l~~~~~~~--~~~~~~~l 282 (572)
-.+++|+|..|.|||||++.++...... .+.+++...+ -+.+... ...+.+.+... ..... .+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 4589999999999999999998854322 2222222100 0111111 11223332210 11122 22233345
Q ss_pred HHHhhcCceEEEEecCC---ChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 283 KKRLQQMNVCIILDKVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 283 ~~~L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
.+.+..++-+++||+-. |....+.+...+... +..||++|.+...... .++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 56666778899999874 222222222222212 3568888877665432 4455544
No 234
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.06 E-value=0.017 Score=59.76 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=64.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-ccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-TSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-~~~~~~~l~~~L~~ 288 (572)
...|.|.|..|+||||+...+.+.+.......++.. .++ .+.........+....... .......++..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp--~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDP--IEYVHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCC--hhhhccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 368999999999999999998887665544444442 111 1111000000000000000 23456677888888
Q ss_pred CceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchh
Q 038826 289 MNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (572)
Q Consensus 289 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v 329 (572)
.+=.|++|.+.+.+.+...+... ..|..++.|.-....
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 99999999998887766544322 235556666554443
No 235
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.06 E-value=0.032 Score=55.38 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=64.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCC----Ccccc--chHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGES----TVETS--ILPQCIK 283 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~----~~~~~--~~~~~l~ 283 (572)
..-++|.|..|.|||||.+.++..+... .+.+++.. .++.......++...+ ..+.... .+..+ ....-+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHHh-cccccccccccccccccchHHHHHH
Confidence 4678999999999999999999876543 33444431 1111111112222111 0010000 01111 1122233
Q ss_pred HHh-hcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhh
Q 038826 284 KRL-QQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL 330 (572)
Q Consensus 284 ~~L-~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~ 330 (572)
..+ ...+=++++|.+...+.+..+...+. .|..+|+||-+..+.
T Consensus 188 ~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 333 35788999999988777777665543 477899999876653
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0062 Score=67.94 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=84.7
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-ccc-----eEEEEeecccccccccHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QFE-----GWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~-----~~~wv~~~~~~s~~~~~~~l~ 260 (572)
..++||+.|++++.+.|.....+- -.++|-+|||||+++.-++.++-. .-+ ..++-- ++..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL---------D~g~L- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL---------DLGSL- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe---------cHHHH-
Confidence 468999999999999998754332 236799999999999999987533 222 112221 11111
Q ss_pred HHHHHHhhCCCC--ccccchHHHHHHHhhcCceEEEEecCCC-----------hhhhHHHhcCCCCCCCCcEEEEEeCCc
Q 038826 261 DQIVSQILGEST--VETSILPQCIKKRLQQMNVCIILDKVDK-----------FGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 261 ~~il~~l~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gs~IIvTTR~~ 327 (572)
+.+..- +..+.+...+.+.-+..+..|.+|.+.. .+.-.-|.+.+.. +.--.|=.||-++
T Consensus 238 ------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~E 310 (786)
T COG0542 238 ------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDE 310 (786)
T ss_pred ------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHH
Confidence 111111 1122233333333334589999999842 2222334444432 2222344566544
Q ss_pred hh--hh----hcCCceEEEecCCChhhHHHHHHhh
Q 038826 328 KV--LD----KYGVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 328 ~v--~~----~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
.- .. .....+.+.|...+.+++...++-.
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 21 00 0113467889999999999888743
No 237
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.05 E-value=0.021 Score=61.04 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=55.2
Q ss_pred ccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc--
Q 038826 197 QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-- 274 (572)
Q Consensus 197 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-- 274 (572)
.++...|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+. .. ....++... +..++....+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs----~E--es~~qi~~r-a~rlg~~~~~l~~ 139 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS----GE--ESASQIKLR-AERLGLPSDNLYL 139 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----cc--ccHHHHHHH-HHHcCCChhcEEE
Confidence 3444455444334568999999999999999999887654434567776 22 223333222 33333222212
Q ss_pred -ccchHHHHHHHh-hcCceEEEEecCC
Q 038826 275 -TSILPQCIKKRL-QQMNVCIILDKVD 299 (572)
Q Consensus 275 -~~~~~~~l~~~L-~~kr~LlVLDdv~ 299 (572)
.+.....+.+.+ ..+.-++|+|.+.
T Consensus 140 ~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 140 LAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred eCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 122233444444 3466789999984
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.044 Score=50.46 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=63.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCc----------c--ccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTV----------E--TSI 277 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~----------~--~~~ 277 (572)
-.+++|.|..|.|||||.+.++..... ..+.+++... .... .........+ ..+ ..... . .+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~-~~~~-~~~~~~~~~i-~~~-~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGV-DLRD-LDLESLRKNI-AYV-PQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCE-Ehhh-cCHHHHHhhE-EEE-cCCchhccchHHHHhhCHHHH
Confidence 458999999999999999999885432 3444555421 0100 0011110000 000 00000 0 111
Q ss_pred hHHHHHHHhhcCceEEEEecCCC---hh---hhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 278 LPQCIKKRLQQMNVCIILDKVDK---FG---HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 278 ~~~~l~~~L~~kr~LlVLDdv~~---~~---~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
..-.+.+.+..++-+++||+-.. .. .+..++..+. .+..||++|.+...... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12234555667788999999742 22 2333333332 34678888888766543 4455544
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=96.04 E-value=0.057 Score=57.16 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+.+|.++|.+|+||||+|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999988888765444
No 240
>PRK03839 putative kinase; Provisional
Probab=96.02 E-value=0.0048 Score=57.44 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 241
>PRK08233 hypothetical protein; Provisional
Probab=96.01 E-value=0.0052 Score=57.12 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998654
No 242
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.99 E-value=0.03 Score=51.34 Aligned_cols=110 Identities=14% Similarity=-0.013 Sum_probs=58.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-cceE--EEEeecccccccccHHHHHHHHHHHhh--CCC------C-cc----
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-FEGW--CFMANVREESKRVELVHLRDQIVSQIL--GES------T-VE---- 274 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~--~wv~~~~~~s~~~~~~~l~~~il~~l~--~~~------~-~~---- 274 (572)
..|-|++-.|.||||.|..++-+...+ +... -|+. -....+-..++..+.-.+. +.. + +.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK----g~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIK----GAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec----CCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 577788889999999999888764443 3321 2443 1112233333333200000 000 0 00
Q ss_pred ccchHHHHHHHhhcC-ceEEEEecCC--------ChhhhHHHhcCCCCCCCCcEEEEEeCCc
Q 038826 275 TSILPQCIKKRLQQM-NVCIILDKVD--------KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 275 ~~~~~~~l~~~L~~k-r~LlVLDdv~--------~~~~~~~l~~~~~~~~~gs~IIvTTR~~ 327 (572)
........++.+... -=|||||.+. +.+++-.++.. ..++..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 122333445555444 4599999984 23334444433 33678999999986
No 243
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.99 E-value=0.0031 Score=62.58 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=22.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.|.|+|.+|+||||+|+++...+...=..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999986655322344443
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.041 Score=56.90 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.++|+|+|.+|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999886543322344454
No 245
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.97 E-value=0.026 Score=52.34 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=59.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeec--ccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANV--REESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~--~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
-.+++|.|..|.|||||.+.++.-... ..+.+++... .-+.+... + ...+...-.+.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~-----------L-----SgGq~qrv~laral~ 87 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID-----------L-----SGGELQRVAIAAALL 87 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC-----------C-----CHHHHHHHHHHHHHh
Confidence 358999999999999999998875432 2233333311 00111111 0 001222233455566
Q ss_pred cCceEEEEecCC---ChhhhHHHhcCCCCC--CCCcEEEEEeCCchhhhhcCCceEEEec
Q 038826 288 QMNVCIILDKVD---KFGHSEYLTGGLSRF--GHGSRVIVTTRDKKVLDKYGVDYVYKVE 342 (572)
Q Consensus 288 ~kr~LlVLDdv~---~~~~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~~~~~~~~~~l~ 342 (572)
.++-+++||+-. |....+.+...+... ..+..||++|.+......+ .+.++.+.
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 778899999874 222222222211111 1225678888776655433 23455444
No 246
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.029 Score=57.55 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=58.6
Q ss_pred ccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc--
Q 038826 197 QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-- 274 (572)
Q Consensus 197 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-- 274 (572)
.++...|..+--.-.+|.|-|-+|||||||..+++.++..+. .+.+|+ ...+..++. --+..++...++.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~Qik-lRA~RL~~~~~~l~l 151 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIK-LRADRLGLPTNNLYL 151 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHH-HHHHHhCCCccceEE
Confidence 344444443322346899999999999999999999887766 778886 223333332 2223444333322
Q ss_pred -ccchHHHHHHHh-hcCceEEEEecCC
Q 038826 275 -TSILPQCIKKRL-QQMNVCIILDKVD 299 (572)
Q Consensus 275 -~~~~~~~l~~~L-~~kr~LlVLDdv~ 299 (572)
.+.-.+.+.+.+ ..++-|+|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 333344444444 4678899999984
No 247
>PRK06762 hypothetical protein; Provisional
Probab=95.95 E-value=0.0055 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 248
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.1 Score=55.15 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+.++.++|.+|+||||+|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988887653
No 249
>PRK00625 shikimate kinase; Provisional
Probab=95.90 E-value=0.0056 Score=56.55 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|+||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 250
>PRK04040 adenylate kinase; Provisional
Probab=95.90 E-value=0.0076 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 251
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.89 E-value=0.0066 Score=57.99 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 252
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.88 E-value=0.012 Score=60.30 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=38.1
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..++|....++++.+.+..-...-.-|.|+|-.|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999998888887654433456889999999999999998763
No 253
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.014 Score=61.45 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCcccccc---ccccccccccccC------CC-ceEEEEeecCcchHhHHHHHHHhh
Q 038826 187 EDLVGLDS---HIQRNNSLLCVRL------PD-FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 187 ~~~vGR~~---~~~~l~~~L~~~~------~~-~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+++-|-|+ |+++|+++|..+. .+ ++-|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 35566664 5667777887653 12 667899999999999999999875
No 254
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.87 E-value=0.0068 Score=55.79 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 255
>PTZ00301 uridine kinase; Provisional
Probab=95.84 E-value=0.006 Score=58.16 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..+|+|.|.+|+||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 256
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.84 E-value=0.029 Score=57.55 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=41.0
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHh--hcccc----cceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFN--QISSQ----FEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~----f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
|..+|..+-..-.++-|+|.+|+|||+|+.+++- ..... -..++|++ ....+...++.+ ++..+
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP-IAERF 184 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH-HHHHc
Confidence 4444544433457888999999999999988764 22211 24678998 555566666554 34443
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.83 E-value=0.043 Score=50.80 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=60.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh---c--ccc---cc--eEEEEeecccccccccHHHHHHHHHHHhhCCC---C-c--
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ---I--SSQ---FE--GWCFMANVREESKRVELVHLRDQIVSQILGES---T-V-- 273 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~---~--~~~---f~--~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~---~-~-- 273 (572)
-.+++|+|..|+|||||.+.+... + ... |. ...|+. + .+.+..+.... . .
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~------q--------~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID------Q--------LQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh------H--------HHHHHHcCCCccccCCCcC
Confidence 468999999999999999988631 1 100 10 122221 1 23444443221 1 1
Q ss_pred -c--ccchHHHHHHHhhcC--ceEEEEecCC---ChhhhHHHhcCCCCC-CCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 274 -E--TSILPQCIKKRLQQM--NVCIILDKVD---KFGHSEYLTGGLSRF-GHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 274 -~--~~~~~~~l~~~L~~k--r~LlVLDdv~---~~~~~~~l~~~~~~~-~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
. .+...-.+.+.+..+ +-+++||+.. +....+.+...+... ..|..||++|.+...... .+.++.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 112222344455566 7788999874 222222222222111 136678888888776542 4555555
No 258
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.82 E-value=0.024 Score=60.67 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=55.3
Q ss_pred cccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-
Q 038826 196 IQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE- 274 (572)
Q Consensus 196 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~- 274 (572)
+.++..+|..+-..-.++.|.|.+|+|||||+.+++......-..++|+. .. ....++... +..++-...+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs----~E--Es~~qi~~r-a~rlg~~~~~l~ 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS----GE--ESLQQIKMR-AIRLGLPEPNLY 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE----Cc--CCHHHHHHH-HHHcCCChHHeE
Confidence 34455555544344578999999999999999999876544434577876 21 122332221 12222211111
Q ss_pred --ccchHHHHHHHhhc-CceEEEEecCC
Q 038826 275 --TSILPQCIKKRLQQ-MNVCIILDKVD 299 (572)
Q Consensus 275 --~~~~~~~l~~~L~~-kr~LlVLDdv~ 299 (572)
.+.....+.+.+.. +.-++|+|.+.
T Consensus 153 ~~~e~~~~~I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 153 VLSETNWEQICANIEEENPQACVIDSIQ 180 (454)
T ss_pred EcCCCCHHHHHHHHHhcCCcEEEEecch
Confidence 22233445555433 56789999884
No 259
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.79 E-value=0.01 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|.|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 260
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.79 E-value=0.013 Score=57.64 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+|.++|++|+||||+|+.++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 261
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0098 Score=56.26 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=26.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999988766
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.77 E-value=0.017 Score=54.52 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=51.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh---
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL--- 286 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L--- 286 (572)
-+++.|.|.+|.||||+...+...+...-..++++. ...... ..+....+..... +...+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT~~Aa----~~L~~~~~~~a~T----i~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PTNKAA----KELREKTGIEAQT----IHSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SSHHHH----HHHHHHHTS-EEE----HHHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----CcHHHH----HHHHHhhCcchhh----HHHHHhcCCccc
Confidence 368889999999999999998876555433344443 111122 2222222211100 000000000
Q ss_pred ------hcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeC
Q 038826 287 ------QQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTR 325 (572)
Q Consensus 287 ------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR 325 (572)
..++-+||+|++.- ...+..+...... .|+++|+.--
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345999999963 3456666655542 4778876543
No 263
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.76 E-value=0.038 Score=51.00 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=62.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCc----------c--ccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTV----------E--TSI 277 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~----------~--~~~ 277 (572)
-.+++|+|..|.|||||.+.++..... ..+.+++... ... ..........+. .+ .+... . .+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~-~~~~~~~~~~i~-~~-~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGA-DIS-QWDPNELGDHVG-YL-PQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCE-Ecc-cCCHHHHHhheE-EE-CCCCccccCcHHHHCcCHHHH
Confidence 358999999999999999999875432 2344444311 011 011111111110 00 00000 0 111
Q ss_pred hHHHHHHHhhcCceEEEEecCC---Chhh---hHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 278 LPQCIKKRLQQMNVCIILDKVD---KFGH---SEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 278 ~~~~l~~~L~~kr~LlVLDdv~---~~~~---~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
..-.+.+.+..++-+++||+.. |... +..++..+. ..|..||++|.+..... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 2223445566677799999984 2222 222222222 23667888888776654 3 4555554
No 264
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.75 E-value=0.018 Score=65.36 Aligned_cols=49 Identities=18% Similarity=0.092 Sum_probs=38.7
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...++|+...++.+.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3479999998888877666433334568899999999999999998853
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.75 E-value=0.004 Score=66.95 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCccccccccccccccccc----cCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV----RLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.+++|.++.++++.+.|.. -...-+++.++|++|+||||||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3689999999999998832 2334679999999999999999999985443
No 266
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.73 E-value=0.011 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.066 Sum_probs=27.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..+|.|+|++|+||||+|+.++......-..+.++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 468999999999999999999987643322345554
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.72 E-value=0.033 Score=54.32 Aligned_cols=123 Identities=13% Similarity=0.009 Sum_probs=68.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEee-cccccccccHHHHHHHHHHHhhCCCC-------cc-ccchH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMAN-VREESKRVELVHLRDQIVSQILGEST-------VE-TSILP 279 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~-~~~~s~~~~~~~l~~~il~~l~~~~~-------~~-~~~~~ 279 (572)
+-.+++|+|-+|+|||||++.+..-.......+.|-.. +...+ .....+-..+++...+.... +. ..+.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 34689999999999999999999855544333333210 00011 22233344455555443322 11 22222
Q ss_pred -HHHHHHhhcCceEEEEecCCChh------hhHHHhcCCCCCCCCcEEEEEeCCchhhhhc
Q 038826 280 -QCIKKRLQQMNVCIILDKVDKFG------HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY 333 (572)
Q Consensus 280 -~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~ 333 (572)
-.+.+.|.-++-|+|.|..-+.- +.-.++..+. ...|-..+.-|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 24566778899999999875332 2222222222 12355677777777776655
No 268
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.032 Score=55.32 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=54.9
Q ss_pred cccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHH----hhCCCCccccc
Q 038826 202 LLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQ----ILGESTVETSI 277 (572)
Q Consensus 202 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~----l~~~~~~~~~~ 277 (572)
.|..+-..-+++=|+|+.|+||||+|.+++-.....-..++|++ ....+++..+.. +... +.-..+...++
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~ 126 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQ 126 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCCCCHHHHHH-HHHhhhcceeEecCCCHHH
Confidence 33333344678889999999999999998776555555889998 445566655443 3333 11111111122
Q ss_pred ---hHHHHHHHhhcCceEEEEecCC
Q 038826 278 ---LPQCIKKRLQQMNVCIILDKVD 299 (572)
Q Consensus 278 ---~~~~l~~~L~~kr~LlVLDdv~ 299 (572)
....+......+--|+|+|.+-
T Consensus 127 q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 127 QLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCc
Confidence 2223333333345699999984
No 269
>PRK05973 replicative DNA helicase; Provisional
Probab=95.68 E-value=0.017 Score=56.01 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=27.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.++.|.|.+|+|||++|.+++.....+-..++++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998875433444556665
No 270
>PRK13947 shikimate kinase; Provisional
Probab=95.66 E-value=0.0079 Score=55.36 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999986543
No 271
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.59 E-value=0.0096 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|+|.+|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999999999999988654
No 272
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.58 E-value=0.14 Score=55.85 Aligned_cols=134 Identities=12% Similarity=0.140 Sum_probs=85.5
Q ss_pred CCCCcccccccccccccccccc--C-CCceEEEEeecCcchHhHHHHHHHhhcc-----c---ccceEEEEeeccccccc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR--L-PDFQMVRTWSMSGISKTDIAGAIFNQIS-----S---QFEGWCFMANVREESKR 253 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~---~f~~~~wv~~~~~~s~~ 253 (572)
.+..+-+||.|..+|...+..- . .....+-|.|.+|.|||.+...|.+.+. . .|+ .+.|+ .-.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN----gm~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN----GLRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc----ceee
Confidence 5567889999999998887642 1 2245888999999999999999988432 1 243 24454 2334
Q ss_pred ccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh-----cCceEEEEecCCChhh--hHHHhcCCCCC-CCCcEEEEEe
Q 038826 254 VELVHLRDQIVSQILGESTVETSILPQCIKKRLQ-----QMNVCIILDKVDKFGH--SEYLTGGLSRF-GHGSRVIVTT 324 (572)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IIvTT 324 (572)
....+++..|...+.+.... .....+.+..+.. .+.++|++|+++..-. -+-+...+.|. .++++++|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~-~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVT-WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCccc-HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 46888888898888776542 2334445555553 3568888998864321 12222333333 3577766543
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.58 E-value=0.033 Score=58.65 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=23.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+|.++|.+|+||||+|..++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999988875543
No 274
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.56 E-value=0.0093 Score=55.70 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=23.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 275
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.56 E-value=0.099 Score=51.02 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=19.9
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+..|+|+||+|||+||..++-.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999988754
No 276
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.56 E-value=0.049 Score=50.67 Aligned_cols=117 Identities=12% Similarity=-0.015 Sum_probs=59.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHH--HHh-hCCC------C-cc----c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIV--SQI-LGES------T-VE----T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il--~~l-~~~~------~-~~----~ 275 (572)
...|-|+|-.|-||||.|...+-+...+=-.+..+.-.+ -....+-..++..+- ... .+.. + +. .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK-g~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK-GAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec-CCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 457889999999999999988876444322222222111 111223333333210 000 0000 0 00 1
Q ss_pred cchHHHHHHHhhc-CceEEEEecCCCh-----hhhHHHhcCCCCCCCCcEEEEEeCCc
Q 038826 276 SILPQCIKKRLQQ-MNVCIILDKVDKF-----GHSEYLTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 276 ~~~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IIvTTR~~ 327 (572)
.......++.+.. +-=|||||.+-.. -..+.+...+.....+..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233444555544 4559999998421 12233333333334678999999976
No 277
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.02 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999973
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.062 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 279
>PRK06547 hypothetical protein; Provisional
Probab=95.53 E-value=0.011 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|.|.+|+||||+|+.+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998863
No 280
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.018 Score=52.17 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=63.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc--ccchHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE--TSILPQCIKKRLQQ 288 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--~~~~~~~l~~~L~~ 288 (572)
.+++|+|..|.|||||.+.++..+.. ..+.+++... .+.. ......... +.-. .+. .+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~-~~~~~~~~~----i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK-LPLEELRRR----IGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc-CCHHHHHhc----eEEE-eeCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999886543 4555666521 1110 011111111 1000 001 12222334555566
Q ss_pred CceEEEEecCC---ChhhhHHHhcCCCCC-CCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 289 MNVCIILDKVD---KFGHSEYLTGGLSRF-GHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 289 kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
.+-+++||+.. |......+...+... ..+..+|++|.+....... .++++.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 78899999984 222222222221111 1246788888877666553 3445544
No 281
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.50 E-value=0.07 Score=52.34 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||.+.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998743
No 282
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.49 E-value=0.012 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
|.|+|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999977
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.069 Score=49.27 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=62.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCc------------c--c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTV------------E--T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~------------~--~ 275 (572)
-.+++|+|..|.|||||.+.++..... ..+.+++.+. .... .. ......+. -+ .+... . .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~-~~-~~~~~~i~-~~-~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGK-DIKK-EP-EEVKRRIG-YL-PEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-Eccc-ch-HhhhccEE-EE-ecCCccccCCcHHHHhhcCHH
Confidence 458999999999999999999875432 3455555421 0110 00 00000000 00 00000 0 1
Q ss_pred cchHHHHHHHhhcCceEEEEecCCC---hhh---hHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEe
Q 038826 276 SILPQCIKKRLQQMNVCIILDKVDK---FGH---SEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (572)
Q Consensus 276 ~~~~~~l~~~L~~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 341 (572)
+...-.+.+.+..++-+++||+-.. ... +..++..+. ..|..||++|.+......+ .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 1122234556677888999999842 222 222222222 1356788888887665533 3344444
No 284
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.48 E-value=0.023 Score=62.04 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=41.7
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 346799999999998888876544455788999999999999999988543
No 285
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.46 E-value=0.069 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998654
No 286
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.21 Score=52.06 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=79.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
-|--.++|++|.|||++..++++.+. |+ ++.-.+.++..+.+ ++.++.. ...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~n~d----Lr~LL~~--------------------t~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKLDSD----LRHLLLA--------------------TPN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccCcHH----HHHHHHh--------------------CCC
Confidence 35678999999999999999999653 33 22222222222222 2222211 223
Q ss_pred ceEEEEecCCChh--------------------hhHHHhcCCC--CCCC-CcEEEE-EeCCchhhhh-----cCCceEEE
Q 038826 290 NVCIILDKVDKFG--------------------HSEYLTGGLS--RFGH-GSRVIV-TTRDKKVLDK-----YGVDYVYK 340 (572)
Q Consensus 290 r~LlVLDdv~~~~--------------------~~~~l~~~~~--~~~~-gs~IIv-TTR~~~v~~~-----~~~~~~~~ 340 (572)
+-+||+.|++..- .+..|+..+. |.+. +-|||| ||-..+-+.. -..+--+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 5677777775220 1222444333 1122 236654 6654433221 11233455
Q ss_pred ecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHh
Q 038826 341 VEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (572)
Q Consensus 341 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 392 (572)
+.-=+.+.-..|+.+.. +... ...++.+|.+...|.-++=..++..|
T Consensus 367 mgyCtf~~fK~La~nYL-~~~~----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYL-GIEE----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCCCCHHHHHHHHHHhc-CCCC----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 66677777777777765 2222 23456667666677766666666554
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.45 E-value=0.053 Score=50.00 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++.++|++|+||||++..++......-..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999887654422333443
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=95.44 E-value=0.067 Score=54.73 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=24.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
+..+|.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999988888765543
No 289
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.44 E-value=0.042 Score=55.82 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=41.6
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHh--hccc----ccceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFN--QISS----QFEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~----~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
.|..+|..+-..-.++-|+|.+|+|||+||.+++- .... .=..++|++ ....+...++.+ ++..+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIRA-IAERF 154 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHHH-HHHHc
Confidence 34445554434457889999999999999988764 2221 124678998 455566666653 34443
No 290
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.43 E-value=0.011 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988643
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.037 Score=51.35 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=26.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.+++|.|..|.|||||++.++.... .+.+.+.+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 60 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILID 60 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 35899999999999999999986433 234555554
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.11 Score=54.24 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887654
No 293
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.42 E-value=0.016 Score=54.80 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=28.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...+|.|+|++|+||||||+.+...+...-...+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4579999999999999999999987644333345554
No 294
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.42 E-value=0.026 Score=55.87 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=36.1
Q ss_pred cccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 202 LLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 202 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.|..+-..-+++.|+|.+|+|||++|.++..+.......++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33333345679999999999999999999998777788899997
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.40 E-value=0.0075 Score=50.94 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEeecCcchHhHHHHHHHhhcccc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
|-|+|.+|+|||+||..++..+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999988865544
No 296
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.39 E-value=0.0096 Score=55.48 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.9
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 297
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.39 E-value=0.023 Score=58.22 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=33.2
Q ss_pred ccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 189 LVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
++|....++++.+.+..-...-.-|.|+|-.|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 466666666666666543333446889999999999999999874
No 298
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.08 Score=51.54 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=68.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-------------c---ceEEEEeecccccccc--cH----------------
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-------------F---EGWCFMANVREESKRV--EL---------------- 256 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-------------f---~~~~wv~~~~~~s~~~--~~---------------- 256 (572)
..++|+|+.|.|||||.+.+.--++.. . ..+.||..-..+...+ .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999998732211 1 1345555221111111 11
Q ss_pred ------HHHHHHHHHHhhCCCC---cc-----ccchHHHHHHHhhcCceEEEEecCC------ChhhhHHHhcCCCCCCC
Q 038826 257 ------VHLRDQIVSQILGEST---VE-----TSILPQCIKKRLQQMNVCIILDKVD------KFGHSEYLTGGLSRFGH 316 (572)
Q Consensus 257 ------~~l~~~il~~l~~~~~---~~-----~~~~~~~l~~~L~~kr~LlVLDdv~------~~~~~~~l~~~~~~~~~ 316 (572)
.+.....++.++...- .+ .+...-.+.+.|..++=|++||.-- ....+-.++..+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 1233344444333221 11 1222335667788899999999752 22234444444442 3
Q ss_pred CcEEEEEeCCchhhhhc
Q 038826 317 GSRVIVTTRDKKVLDKY 333 (572)
Q Consensus 317 gs~IIvTTR~~~v~~~~ 333 (572)
|+.||+.|-+-.....+
T Consensus 189 g~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 189 GKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CCEEEEEeCCcHHhHhh
Confidence 88899999987665543
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.36 E-value=0.074 Score=56.46 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=27.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc--cccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS--SQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (572)
.+++.++|++|+||||++..++.... ..-..+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999998887654 3334456665
No 300
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.36 E-value=0.11 Score=51.64 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=36.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
.-.++.|.|.+|+||||++.+++.....+ -..++|+. .. ....++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~E--~~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----LE--EPVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----cc--cCHHHHHHHHHHHH
Confidence 34588999999999999999988865444 45677876 22 23455555555443
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.13 Score=53.86 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..++.++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 302
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.34 E-value=0.014 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.0
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 303
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.33 E-value=0.12 Score=49.48 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||.+.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 304
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.31 E-value=0.048 Score=56.01 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=41.6
Q ss_pred ccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc--ccc----cceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 197 QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI--SSQ----FEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 197 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~--~~~----f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
..|..+|..+-..-.++-|+|.+|+|||+||..++-.. ... -..++|++ ....+...++. +++..+
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId----tE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----TEGTFRPQRLI-QIAERF 181 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE----CCCCccHHHHH-HHHHHc
Confidence 34445555443446788899999999999998877532 111 12688998 45555665553 344443
No 305
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.25 E-value=0.082 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEeecCcchHhHHHHHHHhhcc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
|.|+|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 306
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.23 E-value=0.084 Score=49.15 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=25.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.+++|.|..|.|||||.+.++..... ..+.+++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~ 60 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLD 60 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 358999999999999999999875432 23344443
No 307
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.20 E-value=0.034 Score=53.16 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=48.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc-cccHHHHHHHHHHHhhCCC--------Ccc------c
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK-RVELVHLRDQIVSQILGES--------TVE------T 275 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~~~--------~~~------~ 275 (572)
+.++|.|.+|+|||+|+..+.+...... ++++- +.+ ...+.++.+.+...-.... ++. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d~--~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDADV--VVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTTE--EEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccccc--eeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 5789999999999999999998765332 24444 322 3455566655543311110 000 0
Q ss_pred cchHHHHHHHh--hcCceEEEEecCC
Q 038826 276 SILPQCIKKRL--QQMNVCIILDKVD 299 (572)
Q Consensus 276 ~~~~~~l~~~L--~~kr~LlVLDdv~ 299 (572)
....-.+.+++ .++.+|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 00111223333 5899999999984
No 308
>PRK13949 shikimate kinase; Provisional
Probab=95.19 E-value=0.015 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|+|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 309
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.19 E-value=0.03 Score=51.05 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.3
Q ss_pred EEEEeecCcchHhHHHHHHHhhccccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
-|.++||.|+||||+.+.+++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998766554
No 310
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.18 E-value=0.021 Score=55.21 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 311
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.18 E-value=0.013 Score=52.16 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=21.1
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|.|.|.+|+||||+|+.++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 312
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.072 Score=53.93 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=49.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-------ccchHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-------TSILPQC 281 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~~~~ 281 (572)
.-+++-|+|..|+||||||.++.......-..++|++ .....+. ..+..++...+.. .++....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID----~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID----AEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE----SSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec----Ccccchh-----hHHHhcCccccceEEecCCcHHHHHHH
Confidence 3579999999999999999998887655556788998 3333333 3333443332221 2334444
Q ss_pred HHHHhhc-CceEEEEecCCC
Q 038826 282 IKKRLQQ-MNVCIILDKVDK 300 (572)
Q Consensus 282 l~~~L~~-kr~LlVLDdv~~ 300 (572)
+...++. .--++|+|-|-.
T Consensus 123 ~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT
T ss_pred HHHHhhcccccEEEEecCcc
Confidence 4555543 345889999853
No 313
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.14 E-value=0.026 Score=52.60 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++|.|+|+.|+|||||+..+.......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 478999999999999999999999888887555554
No 314
>PTZ00494 tuzin-like protein; Provisional
Probab=95.14 E-value=0.65 Score=48.58 Aligned_cols=163 Identities=8% Similarity=-0.063 Sum_probs=96.3
Q ss_pred CCCCCCccccccccccccccccccC-CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCVRL-PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
+.....+|.|+.|-.-+.+.|.+.. ..++++.+.|.-|.||++|.+....+- --..++|+ +. +.++.++
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD----VR---g~EDtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD----VG---GTEDTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE----ec---CCcchHH
Confidence 4567789999999888888887643 458999999999999999998776542 22356776 32 2344566
Q ss_pred HHHHHhhCCCCcc-------ccchHHHHHHHhhcCceEEEEecC--CChhh-hHHHhcCCCCCCCCcEEEEEeCCchhhh
Q 038826 262 QIVSQILGESTVE-------TSILPQCIKKRLQQMNVCIILDKV--DKFGH-SEYLTGGLSRFGHGSRVIVTTRDKKVLD 331 (572)
Q Consensus 262 ~il~~l~~~~~~~-------~~~~~~~l~~~L~~kr~LlVLDdv--~~~~~-~~~l~~~~~~~~~gs~IIvTTR~~~v~~ 331 (572)
.+++.++-+..+. ..+....-+....++.-+|||-=- .+..- ..+.. .+.+...-|+|++---.+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 7777776655433 222222233334455556665322 22111 11110 1112234677877554443322
Q ss_pred hc---CCceEEEecCCChhhHHHHHHhh
Q 038826 332 KY---GVDYVYKVEGFNYRESLEIFCYY 356 (572)
Q Consensus 332 ~~---~~~~~~~l~~L~~~ea~~Lf~~~ 356 (572)
.. ..-..|.+++++.++|.+.-...
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhcc
Confidence 11 12257889999999998765543
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.077 Score=54.96 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc--ceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~ 245 (572)
..+++++|+.|+||||++..++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999999999998654333 3455554
No 316
>PRK13948 shikimate kinase; Provisional
Probab=95.13 E-value=0.017 Score=53.80 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=24.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..+.|.++||.|+||||+++.++++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999987643
No 317
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.12 E-value=0.027 Score=50.10 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=26.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc-cccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS-SQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (572)
++|.|+|..|+|||||++.+.+.+. ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999865 4466555555
No 318
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.11 E-value=0.013 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 319
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.10 E-value=0.013 Score=54.67 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 320
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.10 E-value=0.011 Score=67.40 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=56.7
Q ss_pred cCceEEEEecCCC---hhhhH----HHhcCCCCCCCCcEEEEEeCCchhhhhcCCc-eE--EEecCCChhhHHHHHHhhh
Q 038826 288 QMNVCIILDKVDK---FGHSE----YLTGGLSRFGHGSRVIVTTRDKKVLDKYGVD-YV--YKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 288 ~kr~LlVLDdv~~---~~~~~----~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~-~~--~~l~~L~~~ea~~Lf~~~a 357 (572)
..+-|++||.... ...-. .++..+. ..|+.+|+||-...+....... .+ ..+. ++. +... +..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4789999999853 22222 2222222 2478899999987764322111 11 1111 111 1111 11111
Q ss_pred hcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcCCc
Q 038826 358 FRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPK 408 (572)
Q Consensus 358 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~ 408 (572)
..+.+. ...|-.|++++ |+|-.+..-|..+.+....+...++++|.
T Consensus 476 -~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 -LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111121 23466777766 88888888777775544445555555543
No 321
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.10 E-value=0.058 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998875
No 322
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.09 E-value=0.016 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEeecCcchHhHHHHHHHhhcc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998753
No 323
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.09 E-value=0.056 Score=46.77 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=50.5
Q ss_pred EEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecC
Q 038826 15 VFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKG 76 (572)
Q Consensus 15 vFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 76 (572)
|||.|. .| ...+..+...|+..|+.+.+=. ....|..+.+.+.+.+.+++.+|++++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899988 55 4589999999998888876444 66889999999999999999999999985
No 324
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.016 Score=51.73 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|-|.+|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999754
No 325
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.05 E-value=0.015 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998863
No 326
>PRK13946 shikimate kinase; Provisional
Probab=95.04 E-value=0.017 Score=53.92 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+.|.++|++|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999873
No 327
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.03 E-value=0.017 Score=53.69 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++.|+|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 328
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.00 E-value=0.039 Score=53.38 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=32.1
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (572)
|.++|..+-..-.++.|.|.+|+|||+||.+++..-..+ =+.++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 334443333345799999999999999999988754444 45677776
No 329
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.99 E-value=0.094 Score=52.58 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=27.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc-c-ceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ-F-EGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~wv~ 245 (572)
+.++++|+|.+|+||||++..++.....+ - ..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999999999999999988865433 1 3445554
No 330
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.13 Score=52.98 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.+++.|+|+.|+||||++..++.....+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999998876543333456665
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.92 E-value=0.037 Score=60.03 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=58.6
Q ss_pred cccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCc--
Q 038826 196 IQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTV-- 273 (572)
Q Consensus 196 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~-- 273 (572)
+..+.++|..+-..-.++.|.|.+|+|||||+.+++.....+-+.++++. -..+..++.... ..++-...+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s------~eEs~~~i~~~~-~~lg~~~~~~~ 321 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA------YEESRAQLLRNA-YSWGIDFEEME 321 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE------eeCCHHHHHHHH-HHcCCChHHHh
Confidence 34555666655445679999999999999999999886554545566665 223344444442 222211100
Q ss_pred ----c-----------ccchHHHHHHHhhc-CceEEEEecCC
Q 038826 274 ----E-----------TSILPQCIKKRLQQ-MNVCIILDKVD 299 (572)
Q Consensus 274 ----~-----------~~~~~~~l~~~L~~-kr~LlVLDdv~ 299 (572)
. .+.....+.+.+.. +.-++|+|.+.
T Consensus 322 ~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 322 QQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred hCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0 13445555555544 55688999885
No 332
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.91 E-value=0.18 Score=53.59 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=29.1
Q ss_pred ccccccccc-----ccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 196 IQRNNSLLC-----VRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 196 ~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++..||. .+.-+.+++.|+|++|+||||..+.++...
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 445555555 233356799999999999999999888753
No 333
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.91 E-value=0.029 Score=55.47 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=33.8
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++.+.+..+-..-.++.|.|.+|+|||+||.+++.....+=..++|+.
T Consensus 24 ~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 24 KIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 444444444334678999999999999999998775433345677776
No 334
>PRK04328 hypothetical protein; Provisional
Probab=94.89 E-value=0.055 Score=53.21 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=33.0
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|.++|..+-..-.++.|.|.+|+|||+||.++.......-+.++|+.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444443334578999999999999999998765333345677776
No 335
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.17 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-.+++|+|..|+|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 46899999999999999999887544
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.88 E-value=0.082 Score=49.56 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++.|.|.+|+||||++..++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999887543
No 337
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.87 E-value=0.15 Score=47.92 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 338
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.87 E-value=0.019 Score=50.83 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=22.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhccccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
.|+|+|+.|+|||||++.+.......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 339
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.86 E-value=0.033 Score=56.50 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.+++...|.|||||||+|.+.+-........+.-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998776655555455554
No 340
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.86 E-value=0.016 Score=55.88 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 341
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.85 E-value=0.023 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 342
>PTZ00035 Rad51 protein; Provisional
Probab=94.84 E-value=0.094 Score=53.91 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=32.5
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc------cccceEEEEe
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS------SQFEGWCFMA 245 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~wv~ 245 (572)
.|..+|..+-..-.++.|+|.+|+|||||+..++-... ..-..++|++
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 34445554444467899999999999999988875322 1123466887
No 343
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.84 E-value=0.052 Score=58.45 Aligned_cols=100 Identities=20% Similarity=0.170 Sum_probs=54.3
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-ceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc---
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-EGWCFMANVREESKRVELVHLRDQIVSQILGESTVE--- 274 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--- 274 (572)
++++|..-. .-+..+|+|.+|+|||||++.+++.+...+ +..+++..+.+ ....+..+.+.+-..+.....+.
T Consensus 406 vIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE--RpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 406 VIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE--RPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC--chhhHHHHHHhccceEEEECCCCCHH
Confidence 444444322 345788999999999999999999765433 33444443322 12233334333311111111110
Q ss_pred ----ccchHHHHHHHh--hcCceEEEEecCCCh
Q 038826 275 ----TSILPQCIKKRL--QQMNVCIILDKVDKF 301 (572)
Q Consensus 275 ----~~~~~~~l~~~L--~~kr~LlVLDdv~~~ 301 (572)
.....-.+.+++ .++.+||++|++...
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 122223344455 578999999999543
No 344
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.02 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.82 E-value=0.18 Score=48.38 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=39.1
Q ss_pred chHHHHHHHhhcCceEEEEecCC------ChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEec
Q 038826 277 ILPQCIKKRLQQMNVCIILDKVD------KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVE 342 (572)
Q Consensus 277 ~~~~~l~~~L~~kr~LlVLDdv~------~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~ 342 (572)
+..-.+.+.|...+-+|+.|.=. +...+-.++..+. ...|..||+.|-+..++..+ +.++.+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 33345667788888999999752 1222333332221 12477899999999999864 4555543
No 346
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.34 Score=46.70 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=72.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh---
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL--- 286 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L--- 286 (572)
++-|..+|++|.|||-+|++.+.+....|-.. . .+ ++.... ..+.+..++...
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL---------A-gP-------QLVQMf-------IGdGAkLVRDAFaLA 260 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQTNATFLKL---------A-GP-------QLVQMF-------IGDGAKLVRDAFALA 260 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHhccchHHHh---------c-ch-------HHHhhh-------hcchHHHHHHHHHHh
Confidence 56788999999999999999988765544210 0 00 111111 122333333322
Q ss_pred h-cCceEEEEecCCCh-------h---------hhHHHhcCCCCCCC--CcEEEEEeCCchh-----hhhcCCceEEEec
Q 038826 287 Q-QMNVCIILDKVDKF-------G---------HSEYLTGGLSRFGH--GSRVIVTTRDKKV-----LDKYGVDYVYKVE 342 (572)
Q Consensus 287 ~-~kr~LlVLDdv~~~-------~---------~~~~l~~~~~~~~~--gs~IIvTTR~~~v-----~~~~~~~~~~~l~ 342 (572)
+ ..+.+|.+|.++-. + ..-.++..+..+++ ..+||..|-.-++ ..+-..+..++.+
T Consensus 261 KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP 340 (424)
T KOG0652|consen 261 KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFP 340 (424)
T ss_pred hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCC
Confidence 2 35788888887521 1 12224445554443 4567766544333 2232344556665
Q ss_pred CCChhhHHHHHHhhhhcCC-CCCCchHHHHHH
Q 038826 343 GFNYRESLEIFCYYAFRQN-HCPGDLLVLSDN 373 (572)
Q Consensus 343 ~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~ 373 (572)
--+++.-..+++-++-.-. .+.-.++++++.
T Consensus 341 ~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 341 HPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 5555544555555543322 334456655543
No 347
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.02 Score=51.77 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEeecCcchHhHHHHHHH
Q 038826 212 MVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~ 231 (572)
.|+|+|.||+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 348
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.80 E-value=0.028 Score=53.58 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=25.2
Q ss_pred cccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 202 LLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 202 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
|+..+....+.|.|+|++|+|||||+..+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444445788999999999999999998754
No 349
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.79 E-value=0.025 Score=52.21 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..|.|+|+.|.||||||+.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.78 E-value=0.033 Score=55.45 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=28.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.+++.++|.+|+||||++..++..+...-..+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999998886655434455554
No 351
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.74 E-value=0.048 Score=55.70 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=38.1
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc------cceEEEEeecccccccccHHHHH
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ------FEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
+.++|..+-..-.++-|+|.+|+|||+||.+++...... =..++|++ ....+....+.
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~----te~~f~~~rl~ 154 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID----TEGTFRPERIE 154 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe----CCCCcCHHHHH
Confidence 333444333346788999999999999999988643211 13688998 44445555554
No 352
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=0.37 Score=47.02 Aligned_cols=223 Identities=14% Similarity=0.178 Sum_probs=116.8
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc------ccceEEEEeeccc------ccccc-
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS------QFEGWCFMANVRE------ESKRV- 254 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~~~~~------~s~~~- 254 (572)
.+.++++.-+.+.+.... ++.+-..++|+.|.||-|.+..+.+++.+ +-+...|....+. ++.+.
T Consensus 14 ~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 466666666666665552 25778899999999999999888885433 2344555552221 11111
Q ss_pred ----------cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCce-EEEEecCCCh--hhhHHHhcCCCCCCCCcEEE
Q 038826 255 ----------ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNV-CIILDKVDKF--GHSEYLTGGLSRFGHGSRVI 321 (572)
Q Consensus 255 ----------~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (572)
.-.-+.+.++........ + +.-..+.| ++|+-.+++. +.-..|..........+|+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~q---------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQ---------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcc---------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 111222333333322211 0 00012233 5566666532 22233333333344677877
Q ss_pred EEe----CCchhhhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHHhhH-hcC-
Q 038826 322 VTT----RDKKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRSS-FYR- 394 (572)
Q Consensus 322 vTT----R~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~~-L~~- 394 (572)
+.. |.-....+ ..-.+.++..+++|-...+++..-..+-..+ .+++.+|+++++|.-- ||-++-.. +..
T Consensus 162 l~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 643 32111111 1135788999999999999887644442222 6789999999988643 33222211 111
Q ss_pred --------CCHHHHHHHHcCC-----cCCCcccHHHHHHHhhccC
Q 038826 395 --------KSKQHWENALHNP-----KQISDPDIHDMLKISYDEL 426 (572)
Q Consensus 395 --------~~~~~w~~~l~~l-----~~~~~~~v~~~l~~Sy~~L 426 (572)
-+..+|+-++.++ .+..+..+.++=..-|+-|
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1355788877763 2233344444444445443
No 353
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.69 E-value=0.056 Score=60.93 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=55.8
Q ss_pred ccccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc--
Q 038826 198 RNNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-- 274 (572)
Q Consensus 198 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-- 274 (572)
.|..+|. .+-..-+++-|+|.+|+||||||.+++......-..++|+. ....++. ..+..++....+.
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E~t~~~-----~~A~~lGvDl~~llv 117 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AEHALDP-----DYAKKLGVDTDSLLV 117 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchhH-----HHHHHcCCChhHeEE
Confidence 3444554 33344678999999999999999887665433445678887 3333332 2444444332211
Q ss_pred -----ccchHHHHHHHhh-cCceEEEEecCC
Q 038826 275 -----TSILPQCIKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 275 -----~~~~~~~l~~~L~-~kr~LlVLDdv~ 299 (572)
.+.....+...+. ++.-|||+|-+.
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2334444444443 356789999984
No 354
>PRK14530 adenylate kinase; Provisional
Probab=94.69 E-value=0.024 Score=54.47 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=21.1
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|+|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 355
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.68 E-value=0.056 Score=48.61 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=18.4
Q ss_pred EeecCcchHhHHHHHHHhhc
Q 038826 215 TWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 215 I~G~gGiGKTtLA~~~~~~~ 234 (572)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999874
No 356
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.68 E-value=0.039 Score=57.10 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=54.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc---eEEEEeecccccccccHHHHHH--HHHHHhhCCCCccccchHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE---GWCFMANVREESKRVELVHLRD--QIVSQILGESTVETSILPQCIKK 284 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~s~~~~~~~l~~--~il~~l~~~~~~~~~~~~~~l~~ 284 (572)
-..|.|+|..|+||||++..+.+.+....+ .++.+.+.-+ .....+.. ..+.+. ............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~~~~v~Q~--~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETISASVCQS--EIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccccccceeeee--eccccccCHHHHHHH
Confidence 468999999999999999999886644332 2344442211 11111100 000000 000002245566778
Q ss_pred HhhcCceEEEEecCCChhhhHHHh
Q 038826 285 RLQQMNVCIILDKVDKFGHSEYLT 308 (572)
Q Consensus 285 ~L~~kr~LlVLDdv~~~~~~~~l~ 308 (572)
.|+..+-.+++..+.+.+..+..+
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 888889999999998887765444
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.65 E-value=0.015 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+|.+.|.-|.|||||++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999864
No 358
>PRK13975 thymidylate kinase; Provisional
Probab=94.64 E-value=0.026 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 359
>PRK04182 cytidylate kinase; Provisional
Probab=94.61 E-value=0.027 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.9
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.60 E-value=0.033 Score=55.46 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=28.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEE
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCF 243 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 243 (572)
+..+|.|.|.+|+|||||...+.+.+.......+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 57899999999999999999999987666544333
No 361
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.2 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998743
No 362
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.12 Score=58.76 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=63.8
Q ss_pred CccccccccccccccccccC------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 188 DLVGLDSHIQRNNSLLCVRL------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
.++|-++.+..|.+.+.... ...-...+.|+.|+|||-||++++.-+.+..+..+-++ .+ +...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----ms------e~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----MS------EFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----hh------hhhh
Confidence 34555555555544443211 13456789999999999999999998866666655554 22 2222
Q ss_pred HHHHHhhCCCCcc-ccchHHHHHHHhhcCce-EEEEecCCCh
Q 038826 262 QIVSQILGESTVE-TSILPQCIKKRLQQMNV-CIILDKVDKF 301 (572)
Q Consensus 262 ~il~~l~~~~~~~-~~~~~~~l~~~L~~kr~-LlVLDdv~~~ 301 (572)
...+.+..+.. ..+....+.+.++.+++ +|.||||+..
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 33443443333 44555678888888876 6669999754
No 363
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.56 E-value=0.074 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.0
Q ss_pred CceEEEEeecCcchHhHHHHHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~ 231 (572)
++..|.+.|.+|.|||-||.+..
T Consensus 244 dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 244 DIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCeEEeeccCCccHhHHHHHHH
Confidence 57899999999999999987644
No 364
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.025 Score=49.68 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+-|.|+|.+|+||||||.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 45889999999999999999964
No 365
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.54 E-value=0.031 Score=54.08 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=26.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccce
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEG 240 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (572)
....|.++||+|+||||..+.++..+...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688899999999999999998876665543
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.53 E-value=0.036 Score=54.12 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=33.9
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|.++|..+-..-.++.|.|.+|+|||+||.++.......-+.++|+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 33445444445679999999999999999988765334456677876
No 367
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.53 E-value=0.037 Score=50.86 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.2
Q ss_pred EEEeecCcchHhHHHHHHHhhccc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
|.|+|.+|+|||||.+.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999987643
No 368
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.53 E-value=0.043 Score=53.28 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=31.3
Q ss_pred cccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 198 RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 198 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.+.+.|..+-....++.|.|.+|+||||||.+++.....+-..++++.
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 344444433334569999999999999999777665422224456665
No 369
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.039 Score=53.11 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.++-|.++|++|.|||-+|++++|+...
T Consensus 210 ppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 4567889999999999999999998655
No 370
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.51 E-value=0.028 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|+|++|+||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 371
>PF13245 AAA_19: Part of AAA domain
Probab=94.49 E-value=0.056 Score=42.44 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=17.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+++.|.|.+|.|||+++.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788899999999965554443
No 372
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.49 E-value=0.026 Score=52.34 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999854
No 373
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.48 E-value=0.032 Score=52.02 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=26.1
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.|.|.+|+|||+||.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999998876444445567776
No 374
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.14 Score=48.57 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=55.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc---ccc-e-EEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS---QFE-G-WCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL 286 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~-~-~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L 286 (572)
-..|.|++|+|||||.+.+++-++. +|. . ++-++.-+++.. .....-+..+...+.--.+ .-+....+...-
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVld~--cpk~~gmmmaIr 215 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLDP--CPKAEGMMMAIR 215 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhhhhhccc--chHHHHHHHHHH
Confidence 3678999999999999999885443 343 2 333331111111 0000001111111110000 001111111122
Q ss_pred hcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeC
Q 038826 287 QQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTR 325 (572)
Q Consensus 287 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR 325 (572)
...+=++|.|.+-..++...++..+. .|-++|.|..
T Consensus 216 sm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaH 251 (308)
T COG3854 216 SMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAH 251 (308)
T ss_pred hcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeec
Confidence 34577999999988887777766554 5877777664
No 375
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.47 E-value=0.21 Score=49.30 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 180 IPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 180 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..+....+.|+|-..- +++..++......-+.+.|+|+.|+|||+-++.+++... ..+-+. .+..+....+
T Consensus 65 ~~~~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p----~~~l~~----~~p~~~a~~~ 135 (297)
T COG2842 65 AALEKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP----NALLIE----ADPSYTALVL 135 (297)
T ss_pred cccccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc----cceeec----CChhhHHHHH
Confidence 3445566778875442 223334443332345889999999999999999988643 223333 4556666667
Q ss_pred HHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhc
Q 038826 260 RDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTG 309 (572)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~ 309 (572)
...++.................+..++.+..-+++.|+.+.. ..++.+..
T Consensus 136 i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~ 187 (297)
T COG2842 136 ILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRR 187 (297)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHH
Confidence 767766666554432344555666667888889999988653 34444443
No 376
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.45 E-value=0.07 Score=55.27 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=57.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
++=+-|||..|.|||.|+-.+|+.+...-...+..+ .-...+.+.+-. +.+ .......+.+.+.++
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~-~~~-----~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQ-LRG-----QDDPLPQVADELAKE 127 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHH-HhC-----CCccHHHHHHHHHhc
Confidence 567889999999999999999996543222222222 011222222221 111 122344556667777
Q ss_pred ceEEEEecCC--Chh---hhHHHhcCCCCCCCCcEEEEEeCCchh
Q 038826 290 NVCIILDKVD--KFG---HSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (572)
Q Consensus 290 r~LlVLDdv~--~~~---~~~~l~~~~~~~~~gs~IIvTTR~~~v 329 (572)
..||+||.+. |.. .+..|...+- ..|. +||+|-|...
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPP 169 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCCh
Confidence 8899999873 332 3454544332 3455 6666665533
No 377
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.45 E-value=0.1 Score=53.09 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=33.2
Q ss_pred ccccccccccCCCceEEEEeecCcchHhHHHHHHHhh--ccccc----ceEEEEe
Q 038826 197 QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ--ISSQF----EGWCFMA 245 (572)
Q Consensus 197 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f----~~~~wv~ 245 (572)
..+..+|..+-..-.++.|+|.+|+||||||..++.. ..... ..++|++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 3444455544445679999999999999999988752 21111 2568887
No 378
>PRK15453 phosphoribulokinase; Provisional
Probab=94.42 E-value=0.045 Score=54.06 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=27.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+..+|+|.|.+|+||||+|+.+.+.++..-...+.++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 4679999999999999999999876543222334444
No 379
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.12 Score=55.61 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=26.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc--ceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~ 245 (572)
.++|+|+|.+|+||||++..++..+.... ..+..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 57999999999999999999887654332 3344444
No 380
>PRK15115 response regulator GlrR; Provisional
Probab=94.41 E-value=0.084 Score=56.66 Aligned_cols=48 Identities=23% Similarity=0.057 Sum_probs=32.8
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..++|....+.++.+....-......|.|.|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357787766665554433222223457799999999999999988743
No 381
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.40 E-value=0.034 Score=53.95 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=25.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
...+|+|.|.+|.|||||++.+...++..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 46799999999999999999999866544
No 382
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.38 E-value=0.36 Score=58.91 Aligned_cols=27 Identities=4% Similarity=-0.044 Sum_probs=23.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+-|.++|++|.|||.||+++|....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356789999999999999999998643
No 383
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.38 E-value=0.051 Score=62.88 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=94.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc-cc---ceEEEEe--ecccccccccHHHHHHHHHHHhhCCCCccccchHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS-QF---EGWCFMA--NVREESKRVELVHLRDQIVSQILGESTVETSILPQCIK 283 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f---~~~~wv~--~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~ 283 (572)
..-+.|+|-+|.||||+...++-.... .+ +..+|+. ..........-..+..-+...+..... .........
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~ 299 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI--AKQLIEAHQ 299 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC--cchhhHHHH
Confidence 346889999999999999988774322 22 2233333 111111100000222222222222221 222333336
Q ss_pred HHhhcCceEEEEecCCChh---------hhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEecCCChhhHHH---
Q 038826 284 KRLQQMNVCIILDKVDKFG---------HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYRESLE--- 351 (572)
Q Consensus 284 ~~L~~kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~--- 351 (572)
++++..++|+.+|.++... .+..+.+.+ +.+++|+|+|....-........+++..+.++.-..
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 7889999999999987542 133333333 378999999876554333223344555554443221
Q ss_pred -----HHHhhhhcCCCCC-CchH-H---HHHHHHHHhCCCchhHHHHhhHhc------CCCHHHHHHHHcC
Q 038826 352 -----IFCYYAFRQNHCP-GDLL-V---LSDNVVDYANGSSLALNVLRSSFY------RKSKQHWENALHN 406 (572)
Q Consensus 352 -----Lf~~~a~~~~~~~-~~~~-~---~~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~ 406 (572)
.+....++..... ..+. . -...-++.....|+.|.+.+..-. ....+-|+.+++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1222222222111 0011 0 122334455888999888774332 1234555555554
No 384
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.048 Score=49.51 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=29.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+..+|-++|++|.||||+|.+++.++......+.-++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3568999999999999999999998766655444443
No 385
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.37 E-value=0.041 Score=54.81 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+-|.++|..|+|||++++.+.....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 5678999999999999999887543
No 386
>PRK08149 ATP synthase SpaL; Validated
Probab=94.37 E-value=0.11 Score=54.65 Aligned_cols=86 Identities=12% Similarity=0.245 Sum_probs=47.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc------c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE------T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~------~ 275 (572)
-..++|+|..|+|||||+..++..... +..++.. + .-...++..+....+...... .++. .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~-I--g~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL-I--GERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE-E--eeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 458999999999999999988875332 2222221 1 112334555555555432211 1100 0
Q ss_pred cchHHHHHHHh--hcCceEEEEecCCC
Q 038826 276 SILPQCIKKRL--QQMNVCIILDKVDK 300 (572)
Q Consensus 276 ~~~~~~l~~~L--~~kr~LlVLDdv~~ 300 (572)
......+.+++ +++++||++||+..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11122233333 57899999999954
No 387
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.21 Score=54.46 Aligned_cols=175 Identities=21% Similarity=0.154 Sum_probs=93.1
Q ss_pred CCCcccccccccc---ccccccccC-------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSHIQR---NNSLLCVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~~~~---l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..+..|.++..++ +++.|..+. .-++-|.++|++|.|||.||++++....--|- . .|.. +
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-----~----iSGS-~ 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-----S----ISGS-D 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce-----e----ccch-h
Confidence 3567787765554 444555432 12567899999999999999999986443321 1 1110 0
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCCCCCC--C
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLSRFGH--G 317 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~--g 317 (572)
..+ ...+.. ....-....+..++-+++|++|.++.. ..+.+++...+-++. |
T Consensus 219 FVe-------mfVGvG---AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 219 FVE-------MFVGVG---ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred hhh-------hhcCCC---cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 111 111100 011122333444566899999988632 135566666655553 3
Q ss_pred cEEEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCchh
Q 038826 318 SRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 318 s~IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
-.||..|-.++|. ..-..+..+.++..+...-.+.+.-++-... .+.-++ ..|++.+-|.-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 2333233333333 2223456677777776777777776653322 111122 2377778777665
No 388
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.34 E-value=0.059 Score=58.99 Aligned_cols=50 Identities=10% Similarity=-0.084 Sum_probs=37.5
Q ss_pred CCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.....++|....++++.+.+..-...-..|.|+|-.|+||+++|+.+.+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34467999998888877766532222345889999999999999997664
No 389
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.34 E-value=0.05 Score=50.02 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3569999999999999999999987654
No 390
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.33 E-value=0.55 Score=50.04 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=47.5
Q ss_pred ccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc-cccceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 189 LVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS-SQFEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++.... .+-..++|++ -..+..++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4455555555555554 323346889999999999999999986543 2223455664 3346677777777655
Q ss_pred hC
Q 038826 268 LG 269 (572)
Q Consensus 268 ~~ 269 (572)
.+
T Consensus 247 ~~ 248 (421)
T TIGR03600 247 SG 248 (421)
T ss_pred cC
Confidence 43
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.33 E-value=0.095 Score=51.97 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=54.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
..+|.|.|..|+||||++..+.+.+...-..++.+.+..+.. +..+ .++... .+........++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~~-----~q~~v~-~~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPGI-----NQVQVN-EKAGLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCCc-----eEEEeC-CcCCcCHHHHHHHHhccC
Confidence 358999999999999999988876643223445554322211 1000 000000 000224567778888888
Q ss_pred ceEEEEecCCChhhhHHHhc
Q 038826 290 NVCIILDKVDKFGHSEYLTG 309 (572)
Q Consensus 290 r~LlVLDdv~~~~~~~~l~~ 309 (572)
+=.|+++++.+.+....+..
T Consensus 150 PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 150 PDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred CCEEEeccCCCHHHHHHHHH
Confidence 89999999998876555443
No 392
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.33 E-value=0.16 Score=43.87 Aligned_cols=34 Identities=18% Similarity=-0.091 Sum_probs=25.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc--ccceEEEEe
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS--QFEGWCFMA 245 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~ 245 (572)
.+.|.|..|.|||+.+..+...... ....++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4679999999999999887775432 345666665
No 393
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.33 E-value=0.032 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=21.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+.|+|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3788999999999999999987543
No 394
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.32 E-value=0.045 Score=53.00 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=32.2
Q ss_pred cccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 200 NSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 200 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++|..+-..-..+.|.|.+|+||||||.+++......-..++|+.
T Consensus 10 D~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 10 DKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred HHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344333334578999999999999999987764333445678887
No 395
>PRK14527 adenylate kinase; Provisional
Probab=94.32 E-value=0.035 Score=52.18 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|.|+|.+|+||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 396
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.31 E-value=0.075 Score=54.12 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=38.2
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc------ccceEEEEeecccccccccHHHHH
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS------QFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
+..+|..+-..-.++-|+|.+|+||||||.+++..... .=..++|++ ....+....+.
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~----te~~f~~~rl~ 147 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID----TENTFRPERIM 147 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE----CCCCCCHHHHH
Confidence 33444433334578899999999999999998765321 112688998 44445555544
No 397
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.29 E-value=0.22 Score=49.12 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|.|||||.+.++--.
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999988743
No 398
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.28 E-value=0.058 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.|+|+|-||+||||+|..++.++.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977655443
No 399
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.045 Score=52.35 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-.+++|+|.+|+|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999886
No 400
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.25 E-value=0.055 Score=54.84 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=25.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+++.+.|-||+||||+|.+.+-.....=..++-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 68899999999999999887775544433344444
No 401
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.25 E-value=0.11 Score=54.70 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=48.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc------c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE------T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~------~ 275 (572)
-..++|.|..|+|||||++.++..... +.+++. .+++ ....+.++.+.++..-... .++. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGE--R~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGE--RGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcC--ChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 457999999999999999999875433 344443 2222 1223444544443321110 0000 0
Q ss_pred cchHHHHHHHh--hcCceEEEEecCCCh
Q 038826 276 SILPQCIKKRL--QQMNVCIILDKVDKF 301 (572)
Q Consensus 276 ~~~~~~l~~~L--~~kr~LlVLDdv~~~ 301 (572)
....-.+.+++ +++++||++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 01111233444 578999999999543
No 402
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.02 Score=62.33 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.3
Q ss_pred CCcccccccccccccccccc----CCCceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR----LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
++=+|+++-.++|.+++.-. +.+-+++..+|++|||||.+|+.++.-+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45689999999998887642 33468999999999999999999999766554
No 403
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.22 E-value=0.033 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|+|++|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998643
No 404
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.20 E-value=0.14 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-..++|+|..|+|||||++.+++...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987654
No 405
>PRK05922 type III secretion system ATPase; Validated
Probab=94.18 E-value=0.15 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-..++|.|..|+|||||.+.++....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~ 182 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK 182 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC
Confidence 35799999999999999999987543
No 406
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.18 E-value=0.038 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|+|.|..|+||||+|+.+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 407
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.029 Score=53.53 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=36.0
Q ss_pred Ccccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccc
Q 038826 188 DLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE 239 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (572)
++=|.+-..+++.+....+ -+.++-|.++|++|.|||.||+++++.....|-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 3445555555555443321 134678999999999999999999997666553
No 408
>PLN02200 adenylate kinase family protein
Probab=94.15 E-value=0.039 Score=53.62 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|.|.|++|+||||+|+.++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998764
No 409
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.13 E-value=0.027 Score=62.45 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=53.7
Q ss_pred CCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeecccccccccHHHHHHH
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
..-+.++|.+..++.|...+... +.+.++|.+|+||||+|+.+++.+.. .++..+|+.+ ...+...+.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~~ 98 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIRT 98 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHHH
Confidence 33457899888888777666543 46889999999999999999987643 3577888874 33455555555
Q ss_pred HHHHh
Q 038826 263 IVSQI 267 (572)
Q Consensus 263 il~~l 267 (572)
++..+
T Consensus 99 v~~~~ 103 (637)
T PRK13765 99 VPAGK 103 (637)
T ss_pred HHHhc
Confidence 55443
No 410
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.12 E-value=0.084 Score=49.52 Aligned_cols=25 Identities=12% Similarity=0.249 Sum_probs=22.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.12 E-value=0.13 Score=49.72 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=32.2
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.+.|..+-..-.++.|.|.+|+|||++|.+++.....+=..++|++
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33344333334578999999999999999998875433334566776
No 412
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.10 E-value=0.15 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-..++|.|..|+|||||.+.++.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~ 95 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA 95 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC
Confidence 457899999999999999998886543
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.09 E-value=0.015 Score=54.44 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhh-CCCC-c-c-ccchHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQIL-GEST-V-E-TSILPQCIKKR 285 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~-~~~~-~-~-~~~~~~~l~~~ 285 (572)
...++|+|..|+|||||++.+...+... ...+-+.+..+..... .... ++. .... . . .....+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4689999999999999999998865432 2333333221111000 0000 000 0000 0 0 12345566677
Q ss_pred hhcCceEEEEecCCChhhhHHHh
Q 038826 286 LQQMNVCIILDKVDKFGHSEYLT 308 (572)
Q Consensus 286 L~~kr~LlVLDdv~~~~~~~~l~ 308 (572)
++..+=.++++.+.+.+.+..+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 77778889999998877665443
No 414
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.08 E-value=1.2 Score=45.37 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=33.3
Q ss_pred EEEecCCChhhHHHHHHhhhhcCCCCC-CchHHHHHHHHHHhCCCchhH
Q 038826 338 VYKVEGFNYRESLEIFCYYAFRQNHCP-GDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 338 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 385 (572)
+++|++++.+|+..++...+-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763332221 233445666666679998654
No 415
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.13 Score=54.41 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=47.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC-------CCcc------cc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE-------STVE------TS 276 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~------~~ 276 (572)
-..++|+|..|+|||||++.++..... ..+++++.. ....++..+....+...... .++. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liG----ergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVG----ERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-Ceeeeeecc----cCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 458999999999999999888764332 234445431 12233444433333332111 1110 11
Q ss_pred chHHHHHHHh--hcCceEEEEecCCC
Q 038826 277 ILPQCIKKRL--QQMNVCIILDKVDK 300 (572)
Q Consensus 277 ~~~~~l~~~L--~~kr~LlVLDdv~~ 300 (572)
...-.+.+++ +++.+|+++||+..
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1112233443 47899999999954
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.08 E-value=0.046 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999987654
No 417
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.07 E-value=0.044 Score=49.97 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=17.8
Q ss_pred EEEeecCcchHhHHHHHHHhh
Q 038826 213 VRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~ 233 (572)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 418
>PRK05439 pantothenate kinase; Provisional
Probab=94.01 E-value=0.036 Score=55.93 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=24.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..-+|+|.|.+|+||||+|+.+...+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999998885543
No 419
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.71 Score=45.55 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=87.7
Q ss_pred CCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
+.+-|.|...+.|.+..-. .....+-|.++|++|.||+-||++|+...... |+. +|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFS----vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFS----VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEE----eehH---
Confidence 4567777777766554321 22236789999999999999999999864432 232 3321
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCCh---------hhhH----HHhcCCC---CCCCCcE
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKF---------GHSE----YLTGGLS---RFGHGSR 319 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~---------~~~~----~l~~~~~---~~~~gs~ 319 (572)
+ +++.-.++ .+.+...|.+.- .+|+-+|.+|.++.. +.-. .++...+ ....|.-
T Consensus 201 -D----LvSKWmGE----SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 201 -D----LVSKWMGE----SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred -H----HHHHHhcc----HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 1 12221121 223333344333 468889999999632 1111 1222222 2233555
Q ss_pred EEEEeCCchhhhhc---CCceEEEecCCChhhHH-HHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 320 VIVTTRDKKVLDKY---GVDYVYKVEGFNYRESL-EIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 320 IIvTTR~~~v~~~~---~~~~~~~l~~L~~~ea~-~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
||-.|-.+-++.+. .....+-+ ||++..|. .+|.-+. +.. +..--+.-.+++.++..|.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl-G~t-p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL-GDT-PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc-CCC-ccccchhhHHHHHhhcCCC
Confidence 55566665554332 12222223 45555554 4555554 222 2212223345666666664
No 420
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.99 E-value=0.031 Score=54.17 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=23.7
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+..+|+|+|.||+|||||..++...+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 356799999999999999999988865543
No 421
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.99 E-value=0.053 Score=53.92 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=28.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++|+|+|.+|+|||||+..+...++.+. .+.-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999877766 455554
No 422
>PRK14532 adenylate kinase; Provisional
Probab=93.98 E-value=0.04 Score=51.58 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=20.0
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
|.|.|++|+||||+|+.++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 423
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.98 E-value=0.17 Score=47.08 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++.|.|.+|+||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998654
No 424
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.98 E-value=0.12 Score=54.76 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=50.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc-eEEEEeecccccccccHHHHHHHHHHHhhCC--------CCc-c-----
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE-GWCFMANVREESKRVELVHLRDQIVSQILGE--------STV-E----- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~-~----- 274 (572)
-+.++|.|.+|+|||||+..++.....+.+ .++++- +++ ....+.++.+.+...-... .++ .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~l-iGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG-VGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-ecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 457999999999999999998876544433 333332 222 2334555555555431111 010 0
Q ss_pred ccchHHHHHHHh---hcCceEEEEecCCC
Q 038826 275 TSILPQCIKKRL---QQMNVCIILDKVDK 300 (572)
Q Consensus 275 ~~~~~~~l~~~L---~~kr~LlVLDdv~~ 300 (572)
.....-.+.+++ +++++||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 011122344555 67899999999953
No 425
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.96 E-value=0.46 Score=42.07 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=19.4
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+.++|.+|+|||||...+..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999888753
No 426
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.94 E-value=0.17 Score=56.49 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998763
No 427
>PRK13768 GTPase; Provisional
Probab=93.94 E-value=0.057 Score=53.21 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=25.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEE
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFM 244 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (572)
.++.|.|.||+||||++..+.......-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5789999999999999988887554432333443
No 428
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.93 E-value=0.043 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+|+|+|+.|+||||+|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 429
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.93 E-value=0.19 Score=49.55 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc----cccceEEEEeecccccc-cccHHHHHHHHHHHhhCCC--------Ccc--
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS----SQFEGWCFMANVREESK-RVELVHLRDQIVSQILGES--------TVE-- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~~~--------~~~-- 274 (572)
-+.++|.|-.|+|||+|+..++++.. .+-+.++++- +.+ .....++...+...-.... ++.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 45789999999999999999887643 2234555554 333 3345555555544311110 000
Q ss_pred ----ccchHHHHHHHh--h-cCceEEEEecCCCh
Q 038826 275 ----TSILPQCIKKRL--Q-QMNVCIILDKVDKF 301 (572)
Q Consensus 275 ----~~~~~~~l~~~L--~-~kr~LlVLDdv~~~ 301 (572)
..-..-.+.+++ + ++++|+++||+...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 011112344444 2 68999999999543
No 430
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.91 E-value=0.04 Score=51.70 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=20.2
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 431
>PRK06761 hypothetical protein; Provisional
Probab=93.91 E-value=0.068 Score=53.20 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=26.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-cceEEEE
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFM 244 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv 244 (572)
++|.|.|++|+||||+|+.+++.+... ++..++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEe
Confidence 579999999999999999999986543 3433333
No 432
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.90 E-value=0.051 Score=49.22 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=25.2
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc-cceEEE
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCF 243 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w 243 (572)
+++|+|..|+|||||+..+...++.+ +...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 57899999999999999999976554 444333
No 433
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.90 E-value=0.21 Score=45.20 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..|+++|++|+|||||...+..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhc
Confidence 4678999999999999999876
No 434
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=1.4 Score=44.35 Aligned_cols=153 Identities=11% Similarity=0.013 Sum_probs=85.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc---------ccc-eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS---------QFE-GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILP 279 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~---------~f~-~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~ 279 (572)
..+..++|..|+||+++|..+++.+-. ..+ ...+++. ......+.++. .+...+.-..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~Ir-~l~~~~~~~~-------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSEFL-SAINKLYFSS-------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHHHH-HHHHHhccCC--------
Confidence 467889999999999999999987511 111 2222220 01112222222 2222221110
Q ss_pred HHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCCceEEEecCCChhhHHHHHHh
Q 038826 280 QCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRVIVTTRD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCY 355 (572)
Q Consensus 280 ~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 355 (572)
.-.+.+=++|+|+++... ....|+..+....+++.+|++|.+ ..+... ......+++.+++.++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 001466788899986543 355566655555567777765544 444433 22346889999999998877765
Q ss_pred hhhcCCCCCCchHHHHHHHHHHhCCCchhHHH
Q 038826 356 YAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (572)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 387 (572)
.. .+ ++.+..++...+|.=-|+..
T Consensus 161 ~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 31 11 23355566666663344444
No 435
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.88 E-value=0.36 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|.|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 436
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.82 E-value=0.049 Score=54.53 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=22.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+.+|+|.|..|+||||+|+.+...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999988766543
No 437
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.05 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998877755
No 438
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.82 E-value=0.11 Score=48.78 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..|+|.|..|+||||+|+.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999987654
No 439
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.82 E-value=0.062 Score=51.20 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+++++|+++|..|+|||||..++.+...... .+..+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~-~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEV-KIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCC-eEEEEE
Confidence 3689999999999999999999988654333 334443
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.82 E-value=0.16 Score=50.11 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=47.2
Q ss_pred ceEEEEeecCcchHhHHH-HHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc-cc---
Q 038826 210 FQMVRTWSMSGISKTDIA-GAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE-TS--- 276 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~-~~--- 276 (572)
-+.++|.|.+|+|||+|| ..+.++.. -+.++.+..+++ ......++.+.+...-... .++. ..
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~~--~~v~~V~~~iGe--r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQKG--KKVYCIYVAIGQ--KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhcC--CCeEEEEEeccc--chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457999999999999996 55655432 344433332222 2234555555555321111 1100 00
Q ss_pred --chHHHHHHHh--hcCceEEEEecCCCh
Q 038826 277 --ILPQCIKKRL--QQMNVCIILDKVDKF 301 (572)
Q Consensus 277 --~~~~~l~~~L--~~kr~LlVLDdv~~~ 301 (572)
...-.+.+++ +++.+||++||+...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 0112233333 578999999999654
No 441
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.81 E-value=0.19 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.-..++|+|..|.|||||++.+..-+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987754
No 442
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.81 E-value=0.054 Score=50.69 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998864
No 443
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.81 E-value=0.18 Score=53.12 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=47.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc------c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE------T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~------~ 275 (572)
-..++|.|..|+|||||+..++...... ..++.... .....+.++.+..+..-... .++. .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~~-~gvi~~iG----er~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDAD-VVVIALVG----ERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC-EEEEEEEe----eechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 4579999999999999999888765432 23333321 22233444444443321111 0000 0
Q ss_pred cchHHHHHHHh--hcCceEEEEecCCC
Q 038826 276 SILPQCIKKRL--QQMNVCIILDKVDK 300 (572)
Q Consensus 276 ~~~~~~l~~~L--~~kr~LlVLDdv~~ 300 (572)
....-.+.+++ +++++||++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 01122234444 57899999999954
No 444
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.80 E-value=0.47 Score=43.88 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=36.8
Q ss_pred cchHHHHHHHhhcCceEEEEecC----CChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcC
Q 038826 276 SILPQCIKKRLQQMNVCIILDKV----DKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYG 334 (572)
Q Consensus 276 ~~~~~~l~~~L~~kr~LlVLDdv----~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~ 334 (572)
++.--.+.+.+-+++-+|+-|.- +....|+-+.-.-.-...|+.||++|-+..+...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 33344566677788999998854 333333332211111235899999999998887763
No 445
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.78 E-value=0.067 Score=48.46 Aligned_cols=36 Identities=6% Similarity=0.069 Sum_probs=29.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++++|+|..|+|||||...+..+++.+--.+.-|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 368999999999999999999998777655555554
No 446
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.76 E-value=0.23 Score=54.02 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=38.0
Q ss_pred HHHHHHhhcCceEEEEecCCCh---hhhHHHhcCCCCCCCCcEEEEEeCCchhhhhcCCceEEEecC
Q 038826 280 QCIKKRLQQMNVCIILDKVDKF---GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEG 343 (572)
Q Consensus 280 ~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~ 343 (572)
-.|.+.|-.++=+|+||.=.|. +.+..|-..+.. -+| -+||.|-++..+..+ +++++++..
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 3455666678889999987544 333333333332 235 689999999887775 334555543
No 447
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.75 E-value=0.048 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEeecCcchHhHHHHHHHhh
Q 038826 213 VRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~ 233 (572)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 448
>PRK14531 adenylate kinase; Provisional
Probab=93.75 E-value=0.048 Score=50.86 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=21.0
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|+|++|+||||+|+.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 449
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.74 E-value=0.092 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=17.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+..|+|++|.||||++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68899999999998877776655
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.73 E-value=0.11 Score=56.26 Aligned_cols=45 Identities=20% Similarity=0.037 Sum_probs=32.6
Q ss_pred ccccccCCCceEEEEeecCcchHhHHHHHHHhh-cccccceEEEEe
Q 038826 201 SLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ-ISSQFEGWCFMA 245 (572)
Q Consensus 201 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~wv~ 245 (572)
++|..+-..-+++.|.|.+|+||||||.+++.. .+..=+.++|+.
T Consensus 12 ~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 12 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344444345679999999999999999998765 333235778887
No 451
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.71 E-value=0.03 Score=58.36 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
.+-|.++|++|+|||++|+.++..+...|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45788999999999999999999765544
No 452
>PRK13409 putative ATPase RIL; Provisional
Probab=93.71 E-value=0.25 Score=54.95 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||++.++...
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998743
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.71 E-value=0.27 Score=51.92 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=61.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCC--------Ccc------c
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGES--------TVE------T 275 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~--------~~~------~ 275 (572)
-..++|.|..|+|||||+..++....... .++... -.......++....+..-+... ++. .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~-gvI~~i----Gerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKADI-NVISLV----GERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCCe-EEEEeC----CCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999988654322 233332 1122444455444443321110 000 1
Q ss_pred cchHHHHHHHh--hcCceEEEEecCCChhh----hHHHhcCCCCCCCCcEEEEEeCCchhhhhc
Q 038826 276 SILPQCIKKRL--QQMNVCIILDKVDKFGH----SEYLTGGLSRFGHGSRVIVTTRDKKVLDKY 333 (572)
Q Consensus 276 ~~~~~~l~~~L--~~kr~LlVLDdv~~~~~----~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~ 333 (572)
......+.+++ ++++.||++||+....+ +.......+. .|--..+.|....++...
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 11122233333 47899999999964422 2223333342 244455555555554443
No 454
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.67 E-value=0.057 Score=52.63 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.9
Q ss_pred EeecCcchHhHHHHHHHhhcccc
Q 038826 215 TWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 215 I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
|+|++|+||||+++.+.+-....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999998865444
No 455
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.66 E-value=0.083 Score=53.80 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+..+++++|++|+||||++..++..+...-..+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4679999999999999999999887654422344443
No 456
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.64 E-value=0.34 Score=53.84 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++..|.|.+|.||||++..+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998887754
No 457
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.64 E-value=0.3 Score=52.82 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|.|||||++.++...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 458
>PRK13695 putative NTPase; Provisional
Probab=93.63 E-value=0.064 Score=49.54 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhccc-ccceEEEE
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFM 244 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv 244 (572)
.|+|+|.+|+|||||++.+++.... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999998886542 34433344
No 459
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.62 E-value=0.043 Score=60.39 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=37.3
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+..+-|.+..+.|.+..........+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 35566666666666555544445568999999999999999999997654
No 460
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.60 E-value=0.029 Score=54.12 Aligned_cols=24 Identities=8% Similarity=-0.191 Sum_probs=21.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
+.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999988765
No 461
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.60 E-value=0.16 Score=54.10 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=51.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc------
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE------ 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~------ 274 (572)
-+.++|.|.+|+|||||+..+++.... +-+.++++- +++ ....+.++...+...-... .++.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 467999999999999999998886553 335555553 221 2234455555554321111 0100
Q ss_pred ccchHHHHHHHh---hcCceEEEEecCCC
Q 038826 275 TSILPQCIKKRL---QQMNVCIILDKVDK 300 (572)
Q Consensus 275 ~~~~~~~l~~~L---~~kr~LlVLDdv~~ 300 (572)
.....-.+.+++ .++++||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 111222344555 37899999999953
No 462
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.58 E-value=0.12 Score=48.92 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc-cccHHHHHHHHHHHhhCCCC-cc----ccchHHH
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK-RVELVHLRDQIVSQILGEST-VE----TSILPQC 281 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~~~~-~~----~~~~~~~ 281 (572)
+.+.++.|.|.+|.||||++..+..... ....+.++ ..+.-. -+....+. .. ..... .. ...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~----~~-~~~~~~~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELL----KA-DPDEASELTQKEASRLAEK 84 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHH----HH-HCCCTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhh----hh-hhhhhHHHHHHHHHHHHHH
Confidence 3578899999999999999999887653 34445554 111111 11222222 11 11111 11 2234455
Q ss_pred HHHHhhcCceEEEEecCCC-hhhhHHHh
Q 038826 282 IKKRLQQMNVCIILDKVDK-FGHSEYLT 308 (572)
Q Consensus 282 l~~~L~~kr~LlVLDdv~~-~~~~~~l~ 308 (572)
+.+....+++=+|+|..-. .+....+.
T Consensus 85 ~~~~a~~~~~nii~E~tl~~~~~~~~~~ 112 (199)
T PF06414_consen 85 LIEYAIENRYNIIFEGTLSNPSKLRKLI 112 (199)
T ss_dssp HHHHHHHCT--EEEE--TTSSHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCChhHHHHHH
Confidence 5556666777888898743 34444343
No 463
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.56 E-value=0.069 Score=49.87 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=24.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE 239 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (572)
.+.|.|+|++|+|||||+..+.......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 367999999999999999999887644444
No 464
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.55 E-value=0.056 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+++|+|.+|.|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998654
No 465
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.55 E-value=0.27 Score=54.36 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=21.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++..|.|.+|.||||++..+...+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999988877543
No 466
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.55 E-value=0.035 Score=57.91 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
.+.|.++|++|+|||+||+.++..+...|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 35789999999999999999999765443
No 467
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.53 E-value=0.042 Score=55.94 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=39.6
Q ss_pred CCCCcccccccccc---ccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEE
Q 038826 185 NSEDLVGLDSHIQR---NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCF 243 (572)
Q Consensus 185 ~~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 243 (572)
....+||.....+. +.+++..+.-.-+.|.|.|++|.|||+||..+++.+....+.+.-
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 34678997766553 345554443235789999999999999999999999887775443
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.51 E-value=0.21 Score=51.77 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=29.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc--ccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI--SSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~wv~ 245 (572)
+++.|.|.+|.|||.||..++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478999999999999999999988 55666666665
No 469
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.50 E-value=0.07 Score=47.89 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999998865443
No 470
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.50 E-value=0.056 Score=54.69 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+|.+.|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998875
No 471
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.48 E-value=0.047 Score=50.74 Aligned_cols=21 Identities=14% Similarity=0.136 Sum_probs=19.5
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 472
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.48 E-value=0.038 Score=56.83 Aligned_cols=49 Identities=22% Similarity=0.138 Sum_probs=37.9
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccce
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEG 240 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (572)
.++|.+..+..+...+..+ +.+.+.|.+|+|||+||+.++..+...|-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 4888777777666555543 358899999999999999999987755543
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.46 E-value=0.062 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.190 Sum_probs=19.9
Q ss_pred ceEEEEeecCcchHhHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~ 231 (572)
-..++|.|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 474
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.46 E-value=0.077 Score=57.40 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..++|....+.++...+..-...-..|.|+|-+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999888888777765433344568899999999999999988853
No 475
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.46 E-value=0.038 Score=54.41 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.4
Q ss_pred cccccCCCceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 202 LLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 202 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+.....+..+|+|+|.||+|||||.-.+...+.++
T Consensus 43 ~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 333333457799999999999999999888865443
No 476
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.46 E-value=0.084 Score=53.67 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=59.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCC-Ccc-ccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGES-TVE-TSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~-~~~-~~~~~~~l~~~L~ 287 (572)
...+.|+|..|+|||||++.+...+.... .++.+.+..+..-.. .....-..... ... .-...+.+...|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 45899999999999999999987654332 334444332221100 00000000000 000 1234556677788
Q ss_pred cCceEEEEecCCChhhhHHHhcCCCCCCCCcE-EEEEeCCch
Q 038826 288 QMNVCIILDKVDKFGHSEYLTGGLSRFGHGSR-VIVTTRDKK 328 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~-IIvTTR~~~ 328 (572)
..+=.|++|.+...+.++.+. ... .|.. ++.|+....
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~-a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIR-AVN---TGHPGSITTLHAGS 254 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHH-HHh---cCCCeEEEEEeCCC
Confidence 888899999998876655433 322 2332 466665443
No 477
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.45 E-value=0.07 Score=53.30 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+.|+|+|-||+||||+|..++.-+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 46899999999999999888875443
No 478
>PRK12338 hypothetical protein; Provisional
Probab=93.45 E-value=0.062 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.+|.|.|.+|+||||+|..++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999875
No 479
>PHA02244 ATPase-like protein
Probab=93.44 E-value=0.03 Score=57.43 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=31.7
Q ss_pred CCCCccccccccc----cccccccccCCCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 185 NSEDLVGLDSHIQ----RNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 185 ~~~~~vGR~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.+..++|....+. .+..++..+ .-|.|+|.+|+|||+||+++++....
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445666555443 333333322 34778999999999999999987543
No 480
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.41 E-value=0.19 Score=53.23 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc-eEEEEeecccccccccHHHHHHHHHHHhhCC--------CCcc------
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE-GWCFMANVREESKRVELVHLRDQIVSQILGE--------STVE------ 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~------ 274 (572)
-+.++|.|.+|+|||||+..++.....+.. .++++ .+++ ....+.++.+.+...-... .++.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~a-lIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEE-EecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 457999999999999999998876544333 33343 2322 2234555655554321111 0100
Q ss_pred ccchHHHHHHHh---hcCceEEEEecCCC
Q 038826 275 TSILPQCIKKRL---QQMNVCIILDKVDK 300 (572)
Q Consensus 275 ~~~~~~~l~~~L---~~kr~LlVLDdv~~ 300 (572)
.....-.+.+++ +++++||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 011222344555 46899999999954
No 481
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.40 E-value=0.083 Score=45.26 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.3
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|.+.|.||+||||++..+++.+...-..+.-+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999887655433344444
No 482
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.40 E-value=0.069 Score=59.36 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=41.2
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEe
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMA 245 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (572)
+.++|.+..++.+...+... +-+.++|++|+||||+|+.+++.+... |...+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 57889888777777666543 256699999999999999999977554 34445555
No 483
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.39 E-value=0.2 Score=52.84 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-..++|.|..|+|||||+..+......
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~ 163 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEA 163 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 457999999999999999988875443
No 484
>PRK01184 hypothetical protein; Provisional
Probab=93.32 E-value=0.059 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+|+|+|++|+||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 485
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.94 Score=49.86 Aligned_cols=173 Identities=17% Similarity=0.098 Sum_probs=89.0
Q ss_pred CccccccccccccccccccC--------CC---ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 188 DLVGLDSHIQRNNSLLCVRL--------PD---FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~--------~~---~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
++=|..+..+.+.+.+..+. .. ..-|.++|++|.|||-||-+++....-+ |+. +- +.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis----vK---GP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS----VK---GP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE----ec---CH
Confidence 34455555555555554432 11 2358899999999999999998753322 343 21 12
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCChh-------------hhHHHhcCCCCC--CCCcEE
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKFG-------------HSEYLTGGLSRF--GHGSRV 320 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gs~I 320 (572)
+ ++...-+. .++..+.+..+- .-+++.|.||..++.. ...+++..++.. -.|--|
T Consensus 736 E-----lL~KyIGa----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 E-----LLSKYIGA----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred H-----HHHHHhcc----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 1 22221121 234444444443 4589999999987431 255566555421 135555
Q ss_pred EE-EeCCchhh----hhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 321 IV-TTRDKKVL----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 321 Iv-TTR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
+. |||.+-+- +.-..++.+.-+.-++.+-+++|...+-.-. .+..-..+.++.+..|..=|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~---~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL---KDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC---CccccchHHHhhhcCCCchh
Confidence 54 66644321 1111233333344455666777765542111 11111245666667666544
No 486
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.31 E-value=0.08 Score=46.52 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-.+++|+|..|+|||||.+.++....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 35899999999999999999887543
No 487
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.29 E-value=0.059 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.9
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 488
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=0.066 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-.+|++||++|.||||+|..+-+
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999976544
No 489
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.26 E-value=0.33 Score=54.79 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-..|+|+|..|+|||||++.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 490
>PLN02348 phosphoribulokinase
Probab=93.26 E-value=0.071 Score=55.17 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=25.3
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999997654
No 491
>PLN02924 thymidylate kinase
Probab=93.25 E-value=0.22 Score=47.92 Aligned_cols=28 Identities=4% Similarity=0.009 Sum_probs=24.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
...|+|-|..|+||||+|+.+++.+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999976554
No 492
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.23 E-value=0.22 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.-..++|+|..|+|||||+..++.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~ 163 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA 163 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999988875543
No 493
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.22 E-value=0.16 Score=50.14 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=40.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHHHhhCCC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVSQILGES 271 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~ 271 (572)
-.++.|-|.+|+|||++|..++..+..+ -..++|++ -.-+..++...++....+-.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s~v~ 75 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLSGVP 75 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHHTST
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhhcch
Confidence 3588899999999999999999876544 35666765 34566677777777765543
No 494
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.22 E-value=0.06 Score=58.41 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 207 LPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 207 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++..+|+|.|.+|+||||||+.+...+
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3457899999999999999999998764
No 495
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.19 E-value=0.14 Score=57.77 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=37.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+.++|....++++.+.+..-......|.|+|..|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3568888888877776665433333457899999999999999998753
No 496
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.18 E-value=0.066 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 497
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.17 E-value=0.096 Score=48.14 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999876
No 498
>PLN02165 adenylate isopentenyltransferase
Probab=93.11 E-value=0.089 Score=53.40 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=23.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|+|+.|+||||||..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 45899999999999999999998754
No 499
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.11 E-value=0.22 Score=52.65 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-..++|.|..|+|||||+..++....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~ 182 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL 182 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45899999999999999999987543
No 500
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=9.6 Score=37.46 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=71.0
Q ss_pred CceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhcCC-ceEEEecCCChhhHHHHHHhhhhcCCCCC
Q 038826 289 MNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYGV-DYVYKVEGFNYRESLEIFCYYAFRQNHCP 364 (572)
Q Consensus 289 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 364 (572)
.+=++|+|+++.. .....|+..+....+++.+|++|.+. .+...... ...+.+.+++...-. ...
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~-----------~~~ 156 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPF-----------KVE 156 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccc-----------ccc
Confidence 4557789999744 55777776666656778777777654 44433321 134555554222110 001
Q ss_pred CchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcCCcCCC--cccHHHHHHHhhccCChhhHHHHhhhcccCC
Q 038826 365 GDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPKQIS--DPDIHDMLKISYDELNYKEKDLFLDIACFFN 442 (572)
Q Consensus 365 ~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~--~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~ 442 (572)
....++...++...+ .. ..-.++...+..+....++.+.+.. ...| .-+...++.....++..|+.+-.+-+
T Consensus 157 ~~~~~i~~~L~~~~~-~d----~~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v-~kl~~~~~~~~~q~~~~~l~~l~~~~ 230 (261)
T PRK05818 157 SNDRYFQYILLSFYS-VD----EQLQAYNNGSFSKLKNIIETLINKKNKLIQI-HKAWILFKTFSYYEIAQLLNLLIPTV 230 (261)
T ss_pred cChHHHHHHHHHccC-cc----HHHHHHcCCCHHHHHHHHHHHHcccccHHHH-HHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 112223333333332 11 1222233333333333333221111 1223 22334567777777777766666555
Q ss_pred CC-CHHHHHHHHhh
Q 038826 443 GE-GRDYVKIILNN 455 (572)
Q Consensus 443 ~~-~~~~l~~~w~~ 455 (572)
+. .++.+..+...
T Consensus 231 ~~~~k~~~~~~~~~ 244 (261)
T PRK05818 231 DPEKKSKLYNLLSN 244 (261)
T ss_pred CchHHHHHHHHHHh
Confidence 54 45666666533
Done!