Query 038826
Match_columns 572
No_of_seqs 427 out of 3393
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.1E-47 3.6E-52 348.7 11.4 170 9-183 5-175 (176)
2 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-47 9.2E-52 417.0 16.5 294 190-497 131-472 (549)
3 3ozi_A L6TR; plant TIR domain, 100.0 8.6E-47 2.9E-51 347.7 11.7 170 7-178 30-201 (204)
4 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-41 1.5E-45 402.1 22.3 302 180-496 117-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 5.7E-40 2E-44 365.6 14.2 275 187-489 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 4.4E-38 1.5E-42 348.0 22.0 296 181-492 118-448 (591)
7 3h16_A TIR protein; bacteria T 100.0 2.6E-30 9E-35 233.7 5.6 118 9-127 17-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 2.3E-25 7.9E-30 198.3 2.3 106 6-113 4-112 (146)
9 1fyx_A TOLL-like receptor 2; b 99.8 1.5E-22 5.2E-27 181.2 2.4 102 9-112 2-109 (149)
10 2js7_A Myeloid differentiation 99.8 5.5E-22 1.9E-26 179.5 6.0 101 8-110 12-117 (160)
11 2j67_A TOLL like receptor 10; 99.8 4.5E-22 1.5E-26 182.8 3.7 100 7-108 30-134 (178)
12 1t3g_A X-linked interleukin-1 99.8 5E-21 1.7E-25 172.9 6.7 100 11-110 1-114 (159)
13 2qen_A Walker-type ATPase; unk 99.8 6.3E-18 2.1E-22 173.5 20.2 286 180-490 5-349 (350)
14 2fna_A Conserved hypothetical 99.8 1.3E-17 4.5E-22 171.5 18.3 289 180-489 6-356 (357)
15 1w5s_A Origin recognition comp 99.7 1.4E-16 4.8E-21 167.4 14.9 282 184-475 19-371 (412)
16 2qby_B CDC6 homolog 3, cell di 99.6 5.4E-14 1.9E-18 146.2 21.1 274 187-475 20-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.5 9E-14 3.1E-18 144.3 17.4 281 184-475 17-348 (386)
18 2v1u_A Cell division control p 99.5 1.4E-13 4.9E-18 142.8 17.3 279 185-475 17-351 (387)
19 3j0a_A TOLL-like receptor 5; m 99.5 9.2E-15 3.2E-19 167.8 7.5 100 9-110 667-774 (844)
20 1fnn_A CDC6P, cell division co 99.5 6.8E-13 2.3E-17 138.0 19.1 301 185-496 15-387 (389)
21 1njg_A DNA polymerase III subu 99.3 1.2E-11 4E-16 119.2 13.5 195 186-392 22-231 (250)
22 2chg_A Replication factor C sm 99.2 2.8E-10 9.7E-15 107.9 14.1 184 186-390 16-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.0 1.1E-09 3.8E-14 110.5 12.2 185 186-391 20-212 (323)
24 1iqp_A RFCS; clamp loader, ext 98.9 1.2E-08 4.2E-13 102.9 12.5 184 186-390 24-213 (327)
25 1hqc_A RUVB; extended AAA-ATPa 98.8 1.5E-08 5E-13 102.5 12.4 259 185-484 10-307 (324)
26 1jr3_A DNA polymerase III subu 98.7 4.3E-08 1.5E-12 101.0 11.3 192 186-389 15-221 (373)
27 2chq_A Replication factor C sm 98.7 7.2E-08 2.4E-12 96.9 12.6 176 186-388 16-203 (319)
28 3te6_A Regulatory protein SIR3 98.6 8E-08 2.7E-12 96.1 9.9 164 188-357 21-211 (318)
29 3pfi_A Holliday junction ATP-d 98.6 2.4E-07 8.1E-12 94.2 13.6 260 185-488 27-327 (338)
30 3bos_A Putative DNA replicatio 98.6 3E-08 1E-12 95.2 5.6 174 185-389 26-217 (242)
31 3h4m_A Proteasome-activating n 98.5 1.3E-07 4.3E-12 93.8 8.4 181 184-387 14-229 (285)
32 1jbk_A CLPB protein; beta barr 98.5 4.6E-08 1.6E-12 90.1 4.6 48 186-235 21-68 (195)
33 3d8b_A Fidgetin-like protein 1 98.5 2E-06 6.7E-11 88.1 14.8 202 162-390 63-296 (357)
34 2z4s_A Chromosomal replication 98.4 1.8E-07 6.1E-12 98.6 7.0 180 210-408 130-333 (440)
35 1sxj_A Activator 1 95 kDa subu 98.4 6.9E-07 2.4E-11 96.2 11.1 190 186-389 38-253 (516)
36 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-06 6.6E-11 87.7 13.8 192 185-388 35-234 (353)
37 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.1E-07 3.1E-11 86.2 10.5 181 187-388 6-221 (262)
38 1d2n_A N-ethylmaleimide-sensit 98.4 1.6E-06 5.5E-11 85.1 11.6 168 187-381 33-229 (272)
39 1l8q_A Chromosomal replication 98.3 1.8E-06 6.3E-11 87.1 11.2 177 186-384 10-203 (324)
40 3pvs_A Replication-associated 98.3 1.6E-06 5.5E-11 91.3 10.7 195 185-406 24-243 (447)
41 3uk6_A RUVB-like 2; hexameric 98.3 6.6E-06 2.3E-10 84.4 15.1 196 186-388 43-302 (368)
42 1sxj_E Activator 1 40 kDa subu 98.3 2.1E-06 7.3E-11 87.6 11.3 195 187-389 14-237 (354)
43 3eie_A Vacuolar protein sortin 98.3 5.7E-06 1.9E-10 83.4 14.1 181 186-389 17-228 (322)
44 3u61_B DNA polymerase accessor 98.3 4.4E-06 1.5E-10 84.2 12.3 176 186-385 25-212 (324)
45 3b9p_A CG5977-PA, isoform A; A 98.3 7.9E-06 2.7E-10 81.2 13.8 184 183-389 17-233 (297)
46 2zan_A Vacuolar protein sortin 98.3 1.1E-05 3.6E-10 85.2 15.3 185 183-389 130-345 (444)
47 3cf0_A Transitional endoplasmi 98.3 1.5E-05 5E-10 79.6 15.4 174 187-384 15-223 (301)
48 2qp9_X Vacuolar protein sortin 98.2 1.3E-05 4.4E-10 81.9 15.0 181 186-389 50-261 (355)
49 1xwi_A SKD1 protein; VPS4B, AA 98.2 2.2E-05 7.4E-10 79.1 15.4 181 187-390 12-224 (322)
50 3syl_A Protein CBBX; photosynt 98.2 3.1E-06 1.1E-10 84.6 8.5 148 188-358 32-218 (309)
51 3vfd_A Spastin; ATPase, microt 98.2 1.3E-05 4.3E-10 83.1 13.1 183 185-390 113-327 (389)
52 1a5t_A Delta prime, HOLB; zinc 98.1 2.6E-05 8.8E-10 79.0 14.5 94 288-388 107-204 (334)
53 2p65_A Hypothetical protein PF 98.1 3.5E-06 1.2E-10 77.0 5.7 47 187-235 22-68 (187)
54 3n70_A Transport activator; si 98.0 4.4E-06 1.5E-10 73.7 4.3 47 188-234 2-48 (145)
55 3hu3_A Transitional endoplasmi 98.0 1.5E-05 5.1E-10 84.8 9.3 179 187-388 204-414 (489)
56 1sxj_C Activator 1 40 kDa subu 97.9 3.7E-05 1.3E-09 78.0 10.5 178 187-385 25-208 (340)
57 3pxg_A Negative regulator of g 97.9 3.1E-05 1.1E-09 82.1 9.1 148 186-357 179-338 (468)
58 1in4_A RUVB, holliday junction 97.8 0.00021 7.2E-09 72.2 14.2 259 187-487 25-323 (334)
59 2r62_A Cell division protease 97.8 1.3E-05 4.3E-10 78.4 4.7 153 185-357 9-196 (268)
60 2gno_A DNA polymerase III, gam 97.8 5E-05 1.7E-09 75.7 9.1 142 194-357 4-152 (305)
61 4b4t_J 26S protease regulatory 97.8 0.0002 7E-09 73.3 13.6 171 187-383 148-355 (405)
62 2bjv_A PSP operon transcriptio 97.8 2.3E-05 7.8E-10 76.5 6.3 49 187-235 6-54 (265)
63 1qvr_A CLPB protein; coiled co 97.7 1.9E-05 6.4E-10 90.3 5.6 48 186-235 169-216 (854)
64 4fcw_A Chaperone protein CLPB; 97.7 3.9E-05 1.3E-09 76.5 7.4 58 188-245 18-82 (311)
65 3ec2_A DNA replication protein 97.7 3E-05 1E-09 70.9 5.7 97 210-326 38-142 (180)
66 1ofh_A ATP-dependent HSL prote 97.7 9.8E-05 3.3E-09 73.4 9.6 48 188-235 16-75 (310)
67 3co5_A Putative two-component 97.7 6.2E-06 2.1E-10 72.6 0.6 48 188-235 5-52 (143)
68 4b4t_H 26S protease regulatory 97.7 8.3E-05 2.8E-09 77.3 8.9 170 187-382 209-415 (467)
69 1lv7_A FTSH; alpha/beta domain 97.7 0.00013 4.4E-09 70.7 9.9 152 186-357 11-195 (257)
70 1ojl_A Transcriptional regulat 97.7 7.3E-05 2.5E-09 74.5 7.8 48 187-234 2-49 (304)
71 4b4t_K 26S protease regulatory 97.6 0.00024 8.1E-09 73.8 11.6 52 187-238 172-234 (428)
72 1r6b_X CLPA protein; AAA+, N-t 97.6 0.0001 3.5E-09 83.1 9.6 152 186-357 185-362 (758)
73 4b4t_L 26S protease subunit RP 97.6 0.00044 1.5E-08 71.9 13.5 171 186-382 180-387 (437)
74 4b4t_M 26S protease regulatory 97.6 0.00014 4.7E-09 75.6 9.2 172 185-382 179-387 (434)
75 2w58_A DNAI, primosome compone 97.6 3E-05 1E-09 72.2 3.8 35 211-245 55-89 (202)
76 3pxi_A Negative regulator of g 97.6 0.00015 5.3E-09 81.6 10.0 148 186-357 179-338 (758)
77 2ce7_A Cell division protein F 97.5 0.0005 1.7E-08 72.6 12.5 173 187-382 16-221 (476)
78 2c9o_A RUVB-like 1; hexameric 97.5 0.00045 1.5E-08 72.9 11.3 50 186-235 36-88 (456)
79 2kjq_A DNAA-related protein; s 97.4 0.00014 4.7E-09 64.4 5.4 36 210-245 36-71 (149)
80 3cf2_A TER ATPase, transitiona 97.4 0.00068 2.3E-08 75.8 11.1 172 187-383 204-408 (806)
81 3pxi_A Negative regulator of g 97.3 0.00012 4.1E-09 82.6 4.5 148 187-357 491-675 (758)
82 1ypw_A Transitional endoplasmi 97.3 0.00079 2.7E-08 76.1 11.1 149 187-357 204-385 (806)
83 3t15_A Ribulose bisphosphate c 97.3 0.00066 2.2E-08 67.2 9.2 29 209-237 35-63 (293)
84 4b4t_I 26S protease regulatory 97.3 0.00039 1.3E-08 71.6 7.2 170 187-382 182-388 (437)
85 1eiw_A Hypothetical protein MT 97.2 0.00042 1.4E-08 57.4 6.0 63 11-92 3-65 (111)
86 2x8a_A Nuclear valosin-contain 97.1 0.0037 1.3E-07 61.1 12.3 124 213-357 47-191 (274)
87 1ixz_A ATP-dependent metallopr 96.9 0.0067 2.3E-07 58.3 12.4 124 213-357 52-199 (254)
88 1iy2_A ATP-dependent metallopr 96.9 0.0034 1.2E-07 61.3 10.4 147 213-382 76-245 (278)
89 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0025 8.7E-08 67.5 9.5 170 186-382 30-236 (499)
90 3m6a_A ATP-dependent protease 96.9 0.0024 8.3E-08 68.8 9.2 29 210-238 108-136 (543)
91 1g5t_A COB(I)alamin adenosyltr 96.8 0.0023 7.9E-08 58.7 7.3 113 211-327 29-163 (196)
92 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00038 1.3E-08 69.0 2.0 71 210-300 123-193 (331)
93 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0015 5.3E-08 73.5 6.9 48 187-234 458-512 (758)
94 2cvh_A DNA repair and recombin 96.6 0.0029 1E-07 59.1 6.9 33 210-245 20-52 (220)
95 3hr8_A Protein RECA; alpha and 96.6 0.0079 2.7E-07 60.8 10.3 95 197-300 47-150 (356)
96 1qvr_A CLPB protein; coiled co 96.4 0.0022 7.6E-08 73.1 5.5 48 188-235 559-613 (854)
97 2qgz_A Helicase loader, putati 96.4 0.0064 2.2E-07 60.4 7.9 36 210-245 152-188 (308)
98 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0044 1.5E-07 58.3 6.4 36 210-245 23-58 (235)
99 2b8t_A Thymidine kinase; deoxy 96.3 0.0012 4.2E-08 62.2 2.2 109 210-328 12-127 (223)
100 2zr9_A Protein RECA, recombina 96.3 0.013 4.3E-07 59.4 9.3 37 209-245 60-96 (349)
101 1qhx_A CPT, protein (chloramph 96.2 0.0022 7.6E-08 57.9 3.2 25 211-235 4-28 (178)
102 3io5_A Recombination and repai 96.1 0.01 3.4E-07 58.6 7.4 80 212-300 30-122 (333)
103 3cf2_A TER ATPase, transitiona 96.1 0.0022 7.6E-08 71.7 2.8 150 187-357 477-661 (806)
104 1xp8_A RECA protein, recombina 96.0 0.02 6.9E-07 58.2 9.6 82 209-299 73-162 (366)
105 3kb2_A SPBC2 prophage-derived 96.0 0.0034 1.2E-07 56.1 3.1 25 211-235 2-26 (173)
106 1jr3_D DNA polymerase III, del 95.9 0.094 3.2E-06 52.6 14.1 154 210-387 18-183 (343)
107 1u94_A RECA protein, recombina 95.9 0.01 3.6E-07 60.1 6.7 37 209-245 62-98 (356)
108 2r44_A Uncharacterized protein 95.9 0.0021 7.3E-08 64.5 1.5 48 187-238 27-74 (331)
109 3trf_A Shikimate kinase, SK; a 95.8 0.0042 1.4E-07 56.4 3.1 26 210-235 5-30 (185)
110 3hyn_A Putative signal transdu 95.8 0.024 8.2E-07 50.5 7.6 109 12-125 5-137 (189)
111 1v5w_A DMC1, meiotic recombina 95.8 0.015 5.3E-07 58.6 7.3 48 209-260 121-174 (343)
112 3vaa_A Shikimate kinase, SK; s 95.8 0.0045 1.5E-07 57.2 3.0 26 210-235 25-50 (199)
113 3jvv_A Twitching mobility prot 95.7 0.0025 8.5E-08 64.7 1.3 112 210-331 123-235 (356)
114 3lw7_A Adenylate kinase relate 95.7 0.0046 1.6E-07 55.2 3.0 22 211-233 2-23 (179)
115 2z43_A DNA repair and recombin 95.7 0.012 4.2E-07 58.8 6.3 85 210-299 107-213 (324)
116 2cbz_A Multidrug resistance-as 95.6 0.059 2E-06 51.2 10.4 25 210-234 31-55 (237)
117 1ly1_A Polynucleotide kinase; 95.6 0.0062 2.1E-07 54.8 3.2 22 211-232 3-24 (181)
118 2pjz_A Hypothetical protein ST 95.6 0.059 2E-06 52.1 10.2 24 211-234 31-54 (263)
119 1nks_A Adenylate kinase; therm 95.5 0.0093 3.2E-07 54.3 4.3 26 211-236 2-27 (194)
120 2eyu_A Twitching motility prot 95.5 0.0025 8.5E-08 61.8 0.3 110 210-330 25-136 (261)
121 1kag_A SKI, shikimate kinase I 95.5 0.0056 1.9E-07 54.9 2.5 25 211-235 5-29 (173)
122 1zuh_A Shikimate kinase; alpha 95.5 0.0068 2.3E-07 54.1 3.0 26 210-235 7-32 (168)
123 3hws_A ATP-dependent CLP prote 95.4 0.0045 1.5E-07 63.1 1.9 26 210-235 51-76 (363)
124 1zp6_A Hypothetical protein AT 95.4 0.0083 2.8E-07 54.7 3.5 24 210-233 9-32 (191)
125 2rhm_A Putative kinase; P-loop 95.4 0.0088 3E-07 54.5 3.6 25 210-234 5-29 (193)
126 3iij_A Coilin-interacting nucl 95.4 0.0058 2E-07 55.3 2.4 25 210-234 11-35 (180)
127 3uie_A Adenylyl-sulfate kinase 95.3 0.011 3.9E-07 54.4 4.2 27 209-235 24-50 (200)
128 3bh0_A DNAB-like replicative h 95.3 0.024 8.1E-07 56.5 6.8 53 209-267 67-119 (315)
129 1rz3_A Hypothetical protein rb 95.3 0.0069 2.4E-07 56.0 2.7 27 209-235 21-47 (201)
130 2i1q_A DNA repair and recombin 95.3 0.021 7.1E-07 57.0 6.4 25 209-233 97-121 (322)
131 2yvu_A Probable adenylyl-sulfa 95.3 0.013 4.4E-07 53.3 4.4 27 210-236 13-39 (186)
132 3c8u_A Fructokinase; YP_612366 95.3 0.0064 2.2E-07 56.6 2.3 27 209-235 21-47 (208)
133 1via_A Shikimate kinase; struc 95.3 0.0068 2.3E-07 54.6 2.3 24 212-235 6-29 (175)
134 2vli_A Antibiotic resistance p 95.2 0.008 2.7E-07 54.3 2.7 26 210-235 5-30 (183)
135 3t61_A Gluconokinase; PSI-biol 95.2 0.0073 2.5E-07 55.8 2.4 25 210-234 18-42 (202)
136 2c95_A Adenylate kinase 1; tra 95.2 0.01 3.6E-07 54.2 3.4 25 210-234 9-33 (196)
137 1kgd_A CASK, peripheral plasma 95.2 0.0084 2.9E-07 54.4 2.7 26 210-235 5-30 (180)
138 4eun_A Thermoresistant glucoki 95.2 0.012 4E-07 54.4 3.7 25 210-234 29-53 (200)
139 1knq_A Gluconate kinase; ALFA/ 95.2 0.012 4E-07 52.9 3.7 25 210-234 8-32 (175)
140 2jaq_A Deoxyguanosine kinase; 95.2 0.0092 3.1E-07 54.9 2.9 24 212-235 2-25 (205)
141 1ex7_A Guanylate kinase; subst 95.2 0.0076 2.6E-07 55.1 2.3 29 211-239 2-30 (186)
142 1kht_A Adenylate kinase; phosp 95.2 0.0089 3.1E-07 54.3 2.8 25 211-235 4-28 (192)
143 2iyv_A Shikimate kinase, SK; t 95.2 0.0074 2.5E-07 54.7 2.2 25 211-235 3-27 (184)
144 2ze6_A Isopentenyl transferase 95.1 0.01 3.4E-07 57.2 3.2 25 211-235 2-26 (253)
145 2pze_A Cystic fibrosis transme 95.1 0.13 4.6E-06 48.4 11.1 25 210-234 34-58 (229)
146 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.0072 2.5E-07 64.1 2.2 45 187-235 22-66 (500)
147 1zu4_A FTSY; GTPase, signal re 95.0 0.03 1E-06 55.9 6.4 37 209-245 104-140 (320)
148 2nq2_C Hypothetical ABC transp 95.0 0.026 8.8E-07 54.3 5.8 24 210-233 31-54 (253)
149 1e6c_A Shikimate kinase; phosp 95.0 0.0089 3E-07 53.5 2.3 25 211-235 3-27 (173)
150 1uf9_A TT1252 protein; P-loop, 95.0 0.013 4.5E-07 53.8 3.6 25 209-233 7-31 (203)
151 1y63_A LMAJ004144AAA protein; 95.0 0.012 4.3E-07 53.4 3.3 24 210-233 10-33 (184)
152 2bwj_A Adenylate kinase 5; pho 95.0 0.012 4.1E-07 53.9 3.1 26 210-235 12-37 (199)
153 1ukz_A Uridylate kinase; trans 95.0 0.014 4.8E-07 53.8 3.6 26 209-234 14-39 (203)
154 1tev_A UMP-CMP kinase; ploop, 95.0 0.012 4.2E-07 53.5 3.2 25 210-234 3-27 (196)
155 2plr_A DTMP kinase, probable t 95.0 0.018 6.1E-07 53.2 4.4 27 211-237 5-31 (213)
156 2qt1_A Nicotinamide riboside k 95.0 0.016 5.4E-07 53.7 3.9 26 209-234 20-45 (207)
157 3sr0_A Adenylate kinase; phosp 94.9 0.036 1.2E-06 51.4 6.3 23 212-234 2-24 (206)
158 1uj2_A Uridine-cytidine kinase 94.9 0.013 4.4E-07 56.3 3.3 27 209-235 21-47 (252)
159 3cm0_A Adenylate kinase; ATP-b 94.9 0.013 4.5E-07 53.1 3.1 24 211-234 5-28 (186)
160 1nn5_A Similar to deoxythymidy 94.9 0.018 6.1E-07 53.4 4.0 28 210-237 9-36 (215)
161 1j8m_F SRP54, signal recogniti 94.9 0.02 6.8E-07 56.5 4.5 36 210-245 98-133 (297)
162 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.6E-07 54.0 3.1 22 211-232 2-23 (204)
163 3tau_A Guanylate kinase, GMP k 94.8 0.015 5.3E-07 54.0 3.5 27 210-236 8-34 (208)
164 2pt5_A Shikimate kinase, SK; a 94.8 0.013 4.6E-07 52.0 3.0 24 212-235 2-25 (168)
165 1qf9_A UMP/CMP kinase, protein 94.8 0.015 5.1E-07 52.9 3.3 25 210-234 6-30 (194)
166 2qor_A Guanylate kinase; phosp 94.8 0.012 4.1E-07 54.5 2.6 26 210-235 12-37 (204)
167 1xjc_A MOBB protein homolog; s 94.8 0.019 6.7E-07 51.4 3.8 32 210-241 4-36 (169)
168 3a00_A Guanylate kinase, GMP k 94.7 0.013 4.5E-07 53.4 2.7 28 211-238 2-29 (186)
169 2bdt_A BH3686; alpha-beta prot 94.7 0.015 5.1E-07 53.0 3.1 22 211-232 3-24 (189)
170 1aky_A Adenylate kinase; ATP:A 94.7 0.015 5.2E-07 54.4 3.2 26 210-235 4-29 (220)
171 2xxa_A Signal recognition part 94.7 0.067 2.3E-06 55.6 8.3 29 209-237 99-127 (433)
172 1odf_A YGR205W, hypothetical 3 94.7 0.012 4E-07 57.9 2.5 28 209-236 30-57 (290)
173 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.016 5.5E-07 55.9 3.3 25 210-234 4-28 (260)
174 2cdn_A Adenylate kinase; phosp 94.7 0.016 5.4E-07 53.4 3.0 25 210-234 20-44 (201)
175 1g8p_A Magnesium-chelatase 38 94.6 0.0067 2.3E-07 61.1 0.5 48 186-235 23-70 (350)
176 1jjv_A Dephospho-COA kinase; P 94.6 0.016 5.6E-07 53.5 3.0 22 211-232 3-24 (206)
177 2wwf_A Thymidilate kinase, put 94.6 0.018 6.1E-07 53.4 3.3 27 210-236 10-36 (212)
178 3tr0_A Guanylate kinase, GMP k 94.6 0.016 5.4E-07 53.4 2.9 24 211-234 8-31 (205)
179 1zd8_A GTP:AMP phosphotransfer 94.6 0.018 6.2E-07 54.2 3.3 25 210-234 7-31 (227)
180 2j41_A Guanylate kinase; GMP, 94.6 0.018 6.1E-07 53.1 3.3 25 210-234 6-30 (207)
181 1cke_A CK, MSSA, protein (cyti 94.5 0.016 5.6E-07 54.3 2.9 24 211-234 6-29 (227)
182 3asz_A Uridine kinase; cytidin 94.5 0.02 6.7E-07 53.2 3.4 27 209-235 5-31 (211)
183 2dr3_A UPF0273 protein PH0284; 94.5 0.016 5.5E-07 54.9 2.9 36 210-245 23-58 (247)
184 1um8_A ATP-dependent CLP prote 94.5 0.01 3.6E-07 60.6 1.6 26 211-236 73-98 (376)
185 2pbr_A DTMP kinase, thymidylat 94.5 0.016 5.6E-07 52.7 2.8 24 212-235 2-25 (195)
186 2z0h_A DTMP kinase, thymidylat 94.5 0.04 1.4E-06 50.2 5.4 24 212-235 2-25 (197)
187 1n0w_A DNA repair protein RAD5 94.5 0.032 1.1E-06 52.7 4.9 36 210-245 24-65 (243)
188 2zts_A Putative uncharacterize 94.5 0.028 9.6E-07 53.3 4.5 47 199-245 19-66 (251)
189 2grj_A Dephospho-COA kinase; T 94.5 0.018 6.1E-07 52.9 2.9 25 209-233 11-35 (192)
190 2ewv_A Twitching motility prot 94.5 0.063 2.2E-06 54.7 7.3 108 210-329 136-246 (372)
191 1gtv_A TMK, thymidylate kinase 94.4 0.02 6.9E-07 53.1 3.3 24 212-235 2-25 (214)
192 1zak_A Adenylate kinase; ATP:A 94.4 0.018 6E-07 54.0 2.9 26 210-235 5-30 (222)
193 4gp7_A Metallophosphoesterase; 94.4 0.016 5.6E-07 52.0 2.5 22 210-231 9-30 (171)
194 3umf_A Adenylate kinase; rossm 94.4 0.021 7.2E-07 53.5 3.3 26 209-234 28-53 (217)
195 3ice_A Transcription terminati 94.4 0.018 6.3E-07 58.3 3.1 27 210-236 174-200 (422)
196 3tlx_A Adenylate kinase 2; str 94.4 0.01 3.4E-07 56.8 1.1 26 209-234 28-53 (243)
197 2v54_A DTMP kinase, thymidylat 94.4 0.028 9.6E-07 51.6 4.0 24 211-234 5-28 (204)
198 4a1f_A DNAB helicase, replicat 94.3 0.038 1.3E-06 55.4 5.1 54 210-269 46-99 (338)
199 1gvn_B Zeta; postsegregational 94.3 0.025 8.6E-07 55.5 3.7 25 210-234 33-57 (287)
200 3lda_A DNA repair protein RAD5 94.3 0.052 1.8E-06 55.8 6.2 37 209-245 177-219 (400)
201 2bbw_A Adenylate kinase 4, AK4 94.3 0.02 6.9E-07 54.6 2.9 25 210-234 27-51 (246)
202 3ney_A 55 kDa erythrocyte memb 94.3 0.024 8.2E-07 52.2 3.2 26 210-235 19-44 (197)
203 3fb4_A Adenylate kinase; psych 94.2 0.021 7.2E-07 53.2 2.9 23 212-234 2-24 (216)
204 4e22_A Cytidylate kinase; P-lo 94.2 0.022 7.7E-07 54.6 3.1 26 210-235 27-52 (252)
205 2ga8_A Hypothetical 39.9 kDa p 94.2 0.0082 2.8E-07 60.4 -0.0 30 209-238 23-52 (359)
206 3dl0_A Adenylate kinase; phosp 94.2 0.022 7.7E-07 53.0 3.0 23 212-234 2-24 (216)
207 3nwj_A ATSK2; P loop, shikimat 94.2 0.018 6.2E-07 55.2 2.3 25 211-235 49-73 (250)
208 4a74_A DNA repair and recombin 94.1 0.028 9.6E-07 52.6 3.6 36 210-245 25-66 (231)
209 3kl4_A SRP54, signal recogniti 94.1 0.077 2.6E-06 55.0 7.0 29 209-237 96-124 (433)
210 2p5t_B PEZT; postsegregational 94.1 0.024 8.3E-07 54.4 3.0 26 210-235 32-57 (253)
211 1ye8_A Protein THEP1, hypothet 94.1 0.024 8.4E-07 51.3 2.9 23 212-234 2-24 (178)
212 3fwy_A Light-independent proto 94.1 0.034 1.2E-06 55.3 4.1 37 209-245 47-83 (314)
213 2pez_A Bifunctional 3'-phospho 94.0 0.029 1E-06 50.5 3.3 25 210-234 5-29 (179)
214 1sky_E F1-ATPase, F1-ATP synth 94.0 0.068 2.3E-06 55.7 6.3 28 211-238 152-179 (473)
215 2ehv_A Hypothetical protein PH 93.9 0.026 9E-07 53.6 3.0 36 210-245 30-66 (251)
216 2q6t_A DNAB replication FORK h 93.9 0.087 3E-06 55.0 7.2 66 196-268 187-253 (444)
217 3ake_A Cytidylate kinase; CMP 93.9 0.028 9.7E-07 51.7 3.0 24 212-235 4-27 (208)
218 2f6r_A COA synthase, bifunctio 93.9 0.031 1.1E-06 54.6 3.4 24 209-232 74-97 (281)
219 3cmu_A Protein RECA, recombina 93.9 0.078 2.7E-06 64.6 7.4 82 209-299 1426-1515(2050)
220 1vht_A Dephospho-COA kinase; s 93.9 0.033 1.1E-06 52.0 3.4 23 210-232 4-26 (218)
221 1lvg_A Guanylate kinase, GMP k 93.8 0.024 8.1E-07 52.3 2.4 24 211-234 5-28 (198)
222 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.13 4.4E-06 51.4 7.9 104 211-328 172-276 (330)
223 3a8t_A Adenylate isopentenyltr 93.8 0.03 1E-06 55.9 3.2 26 210-235 40-65 (339)
224 3be4_A Adenylate kinase; malar 93.8 0.027 9.2E-07 52.6 2.7 24 211-234 6-29 (217)
225 1m7g_A Adenylylsulfate kinase; 93.8 0.031 1E-06 52.0 3.0 26 210-235 25-50 (211)
226 2jeo_A Uridine-cytidine kinase 93.7 0.035 1.2E-06 52.9 3.4 26 209-234 24-49 (245)
227 2ck3_D ATP synthase subunit be 93.7 0.14 4.9E-06 53.2 8.2 53 210-266 153-207 (482)
228 3tqc_A Pantothenate kinase; bi 93.7 0.02 6.7E-07 57.1 1.6 27 209-235 91-117 (321)
229 1rj9_A FTSY, signal recognitio 93.7 0.046 1.6E-06 54.1 4.3 28 209-236 101-128 (304)
230 1tue_A Replication protein E1; 93.7 0.03 1E-06 51.7 2.7 27 210-236 58-84 (212)
231 3aez_A Pantothenate kinase; tr 93.7 0.035 1.2E-06 55.2 3.4 27 209-235 89-115 (312)
232 3l0o_A Transcription terminati 93.6 0.15 5.2E-06 51.6 7.9 27 210-236 175-201 (427)
233 1vma_A Cell division protein F 93.6 0.047 1.6E-06 54.0 4.2 37 209-245 103-139 (306)
234 3r20_A Cytidylate kinase; stru 93.6 0.034 1.2E-06 52.6 3.0 26 210-235 9-34 (233)
235 1ak2_A Adenylate kinase isoenz 93.6 0.037 1.3E-06 52.3 3.3 25 211-235 17-41 (233)
236 1znw_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 51.6 2.9 25 210-234 20-44 (207)
237 3d3q_A TRNA delta(2)-isopenten 93.6 0.035 1.2E-06 55.5 3.2 25 211-235 8-32 (340)
238 3crm_A TRNA delta(2)-isopenten 93.5 0.035 1.2E-06 55.1 3.2 25 211-235 6-30 (323)
239 1e4v_A Adenylate kinase; trans 93.5 0.035 1.2E-06 51.6 3.0 23 212-234 2-24 (214)
240 3bgw_A DNAB-like replicative h 93.5 0.072 2.5E-06 55.6 5.6 37 209-245 196-232 (444)
241 2f1r_A Molybdopterin-guanine d 93.5 0.034 1.2E-06 49.9 2.7 26 211-236 3-28 (171)
242 3e1s_A Exodeoxyribonuclease V, 93.5 0.18 6.3E-06 54.3 8.9 28 210-237 204-231 (574)
243 1a7j_A Phosphoribulokinase; tr 93.4 0.029 1E-06 55.1 2.2 27 209-235 4-30 (290)
244 2xb4_A Adenylate kinase; ATP-b 93.3 0.037 1.3E-06 52.0 2.8 23 212-234 2-24 (223)
245 1z6g_A Guanylate kinase; struc 93.3 0.032 1.1E-06 52.2 2.3 25 210-234 23-47 (218)
246 1g41_A Heat shock protein HSLU 93.2 0.024 8.3E-07 58.9 1.3 28 211-238 51-78 (444)
247 2hf9_A Probable hydrogenase ni 93.1 0.052 1.8E-06 50.7 3.5 26 209-234 37-62 (226)
248 3lnc_A Guanylate kinase, GMP k 93.1 0.034 1.2E-06 52.4 2.2 25 210-234 27-52 (231)
249 2j9r_A Thymidine kinase; TK1, 93.1 0.083 2.8E-06 49.0 4.7 109 210-328 28-139 (214)
250 3b9q_A Chloroplast SRP recepto 93.1 0.059 2E-06 53.2 3.9 27 209-235 99-125 (302)
251 1htw_A HI0065; nucleotide-bind 93.1 0.05 1.7E-06 48.2 3.0 25 210-234 33-57 (158)
252 2px0_A Flagellar biosynthesis 93.0 0.051 1.7E-06 53.5 3.4 26 210-235 105-130 (296)
253 3hjn_A DTMP kinase, thymidylat 93.0 0.13 4.3E-06 47.3 5.8 33 212-244 2-34 (197)
254 1ltq_A Polynucleotide kinase; 93.0 0.047 1.6E-06 53.7 3.1 23 211-233 3-25 (301)
255 2wsm_A Hydrogenase expression/ 93.0 0.07 2.4E-06 49.6 4.1 29 209-237 29-57 (221)
256 4eaq_A DTMP kinase, thymidylat 92.9 0.096 3.3E-06 49.4 5.1 27 210-236 26-52 (229)
257 1sq5_A Pantothenate kinase; P- 92.9 0.057 2E-06 53.5 3.6 27 209-235 79-105 (308)
258 4hlc_A DTMP kinase, thymidylat 92.9 0.15 5E-06 47.2 6.2 30 211-240 3-32 (205)
259 1s96_A Guanylate kinase, GMP k 92.9 0.047 1.6E-06 51.2 2.8 26 210-235 16-41 (219)
260 3p32_A Probable GTPase RV1496/ 92.9 0.058 2E-06 54.6 3.7 28 208-235 77-104 (355)
261 1cr0_A DNA primase/helicase; R 92.9 0.064 2.2E-06 52.6 3.9 36 210-245 35-71 (296)
262 3exa_A TRNA delta(2)-isopenten 92.9 0.052 1.8E-06 53.5 3.2 25 210-234 3-27 (322)
263 3cmw_A Protein RECA, recombina 92.8 0.13 4.4E-06 61.9 7.0 95 196-299 717-820 (1706)
264 1c9k_A COBU, adenosylcobinamid 92.8 0.061 2.1E-06 48.6 3.3 29 213-245 2-30 (180)
265 3zvl_A Bifunctional polynucleo 92.8 0.052 1.8E-06 56.2 3.2 26 209-234 257-282 (416)
266 1np6_A Molybdopterin-guanine d 92.8 0.072 2.5E-06 47.9 3.8 26 210-235 6-31 (174)
267 1q3t_A Cytidylate kinase; nucl 92.8 0.059 2E-06 51.0 3.3 26 209-234 15-40 (236)
268 2orw_A Thymidine kinase; TMTK, 92.7 0.079 2.7E-06 48.1 4.0 24 211-234 4-27 (184)
269 2r6a_A DNAB helicase, replicat 92.7 0.096 3.3E-06 54.9 5.2 51 209-265 202-253 (454)
270 2r8r_A Sensor protein; KDPD, P 92.7 0.067 2.3E-06 50.1 3.5 29 212-240 8-37 (228)
271 3e70_C DPA, signal recognition 92.7 0.079 2.7E-06 52.9 4.2 28 209-236 128-155 (328)
272 2qmh_A HPR kinase/phosphorylas 92.6 0.058 2E-06 49.5 2.9 26 210-235 34-59 (205)
273 3foz_A TRNA delta(2)-isopenten 92.6 0.062 2.1E-06 52.9 3.2 25 210-234 10-34 (316)
274 1yrb_A ATP(GTP)binding protein 92.6 0.096 3.3E-06 50.1 4.6 26 210-235 14-39 (262)
275 1nlf_A Regulatory protein REPA 92.6 0.081 2.8E-06 51.4 4.1 25 210-234 30-54 (279)
276 2i3b_A HCR-ntpase, human cance 92.6 0.048 1.6E-06 49.9 2.3 23 212-234 3-25 (189)
277 3end_A Light-independent proto 92.6 0.08 2.7E-06 52.2 4.1 37 209-245 40-76 (307)
278 1cp2_A CP2, nitrogenase iron p 92.5 0.088 3E-06 50.7 4.3 35 211-245 2-36 (269)
279 1ls1_A Signal recognition part 92.4 0.087 3E-06 51.8 4.1 37 209-245 97-133 (295)
280 3cmu_A Protein RECA, recombina 92.4 0.15 5E-06 62.3 6.8 102 189-299 361-471 (2050)
281 2og2_A Putative signal recogni 92.4 0.08 2.7E-06 53.5 3.9 27 209-235 156-182 (359)
282 3dm5_A SRP54, signal recogniti 92.4 0.09 3.1E-06 54.6 4.3 29 209-237 99-127 (443)
283 3k1j_A LON protease, ATP-depen 92.3 0.051 1.7E-06 59.3 2.5 48 187-238 41-88 (604)
284 2ocp_A DGK, deoxyguanosine kin 92.3 0.082 2.8E-06 50.1 3.7 26 210-235 2-27 (241)
285 4edh_A DTMP kinase, thymidylat 92.2 0.18 6.2E-06 46.9 5.9 31 210-240 6-37 (213)
286 1fx0_B ATP synthase beta chain 92.2 0.22 7.6E-06 52.0 7.0 52 210-265 165-218 (498)
287 1pzn_A RAD51, DNA repair and r 92.2 0.077 2.6E-06 53.5 3.5 37 209-245 130-172 (349)
288 2pcj_A ABC transporter, lipopr 92.1 0.064 2.2E-06 50.4 2.7 24 210-233 30-53 (224)
289 1svi_A GTP-binding protein YSX 92.1 0.11 3.8E-06 46.9 4.2 25 209-233 22-46 (195)
290 2qi9_C Vitamin B12 import ATP- 92.1 0.093 3.2E-06 50.2 3.8 27 210-236 26-52 (249)
291 3vr4_D V-type sodium ATPase su 92.1 0.16 5.5E-06 52.5 5.8 85 211-299 152-258 (465)
292 2afh_E Nitrogenase iron protei 92.1 0.1 3.5E-06 50.9 4.2 36 210-245 2-37 (289)
293 3fdi_A Uncharacterized protein 92.1 0.085 2.9E-06 48.7 3.4 25 211-235 7-31 (201)
294 2v3c_C SRP54, signal recogniti 92.1 0.056 1.9E-06 56.2 2.3 37 209-245 98-134 (432)
295 1oix_A RAS-related protein RAB 92.1 0.078 2.7E-06 48.2 3.1 24 210-233 29-52 (191)
296 2onk_A Molybdate/tungstate ABC 92.1 0.11 3.8E-06 49.4 4.2 25 209-234 24-48 (240)
297 3b85_A Phosphate starvation-in 92.1 0.062 2.1E-06 49.9 2.4 23 211-233 23-45 (208)
298 2yhs_A FTSY, cell division pro 92.0 0.096 3.3E-06 55.0 4.0 36 209-245 292-327 (503)
299 2dyk_A GTP-binding protein; GT 92.0 0.086 3E-06 45.8 3.2 23 211-233 2-24 (161)
300 1u0j_A DNA replication protein 91.9 0.069 2.4E-06 51.4 2.6 36 199-234 93-128 (267)
301 3bk7_A ABC transporter ATP-bin 91.8 0.54 1.9E-05 51.0 9.8 130 210-341 382-545 (607)
302 3tif_A Uncharacterized ABC tra 91.8 0.1 3.5E-06 49.4 3.7 24 210-233 31-54 (235)
303 3zq6_A Putative arsenical pump 91.8 0.21 7E-06 49.8 6.0 36 210-245 14-49 (324)
304 3llm_A ATP-dependent RNA helic 91.7 0.41 1.4E-05 45.0 7.8 21 211-231 77-97 (235)
305 2wji_A Ferrous iron transport 91.6 0.09 3.1E-06 46.3 2.9 22 211-232 4-25 (165)
306 2ghi_A Transport protein; mult 91.6 0.11 3.9E-06 49.9 3.8 25 210-234 46-70 (260)
307 2zej_A Dardarin, leucine-rich 91.6 0.069 2.4E-06 48.1 2.2 21 212-232 4-24 (184)
308 1q57_A DNA primase/helicase; d 91.6 0.26 8.9E-06 52.3 6.9 54 209-268 241-295 (503)
309 2h92_A Cytidylate kinase; ross 91.5 0.081 2.8E-06 49.2 2.6 24 211-234 4-27 (219)
310 2axn_A 6-phosphofructo-2-kinas 91.4 0.13 4.3E-06 54.9 4.3 29 210-238 35-63 (520)
311 2d2e_A SUFC protein; ABC-ATPas 91.4 0.092 3.1E-06 50.3 2.9 24 210-233 29-52 (250)
312 2ce2_X GTPase HRAS; signaling 91.4 0.097 3.3E-06 45.5 2.8 22 212-233 5-26 (166)
313 2f9l_A RAB11B, member RAS onco 91.4 0.088 3E-06 48.1 2.6 23 211-233 6-28 (199)
314 1b0u_A Histidine permease; ABC 91.4 0.12 4.1E-06 49.8 3.7 24 210-233 32-55 (262)
315 3eph_A TRNA isopentenyltransfe 91.4 0.098 3.4E-06 53.4 3.2 25 211-235 3-27 (409)
316 3lv8_A DTMP kinase, thymidylat 91.3 0.22 7.4E-06 47.2 5.4 36 210-245 27-63 (236)
317 3tmk_A Thymidylate kinase; pho 91.3 0.48 1.7E-05 44.1 7.7 27 210-236 5-31 (216)
318 1ji0_A ABC transporter; ATP bi 91.3 0.085 2.9E-06 50.1 2.5 24 210-233 32-55 (240)
319 3gfo_A Cobalt import ATP-bindi 91.3 0.12 4.2E-06 50.1 3.7 24 210-233 34-57 (275)
320 4gzl_A RAS-related C3 botulinu 91.3 0.11 3.8E-06 47.6 3.3 40 191-232 13-52 (204)
321 1mv5_A LMRA, multidrug resista 91.3 0.092 3.1E-06 50.0 2.7 24 210-233 28-51 (243)
322 3kjh_A CO dehydrogenase/acetyl 91.2 0.18 6.1E-06 47.6 4.8 33 213-245 3-35 (254)
323 3v9p_A DTMP kinase, thymidylat 91.2 0.19 6.4E-06 47.3 4.8 28 210-237 25-52 (227)
324 2r9v_A ATP synthase subunit al 91.2 0.24 8.3E-06 51.9 6.0 85 210-299 175-277 (515)
325 2qe7_A ATP synthase subunit al 91.2 0.28 9.7E-06 51.3 6.5 85 210-299 162-264 (502)
326 4g1u_C Hemin import ATP-bindin 91.2 0.12 4.3E-06 49.8 3.6 24 210-233 37-60 (266)
327 2zu0_C Probable ATP-dependent 91.2 0.099 3.4E-06 50.6 2.9 24 210-233 46-69 (267)
328 2olj_A Amino acid ABC transpor 91.2 0.13 4.5E-06 49.6 3.7 24 210-233 50-73 (263)
329 4dzz_A Plasmid partitioning pr 91.1 0.18 6E-06 46.2 4.4 35 211-245 2-37 (206)
330 1g6h_A High-affinity branched- 91.1 0.13 4.6E-06 49.3 3.7 24 210-233 33-56 (257)
331 1p5z_B DCK, deoxycytidine kina 91.0 0.078 2.7E-06 51.0 2.0 26 210-235 24-49 (263)
332 1sgw_A Putative ABC transporte 91.0 0.12 4E-06 48.2 3.1 24 211-234 36-59 (214)
333 4tmk_A Protein (thymidylate ki 91.0 0.26 9E-06 45.8 5.5 34 211-244 4-38 (213)
334 1z2a_A RAS-related protein RAB 91.0 0.11 3.6E-06 45.5 2.7 23 211-233 6-28 (168)
335 2wjg_A FEOB, ferrous iron tran 91.0 0.11 3.8E-06 46.6 2.9 24 210-233 7-30 (188)
336 1g8f_A Sulfate adenylyltransfe 91.0 0.073 2.5E-06 56.4 1.8 28 209-236 394-421 (511)
337 1vpl_A ABC transporter, ATP-bi 90.9 0.097 3.3E-06 50.3 2.5 24 210-233 41-64 (256)
338 1svm_A Large T antigen; AAA+ f 90.9 0.12 4E-06 52.7 3.2 26 209-234 168-193 (377)
339 2v9p_A Replication protein E1; 90.9 0.11 3.6E-06 51.3 2.8 26 209-234 125-150 (305)
340 3gmt_A Adenylate kinase; ssgci 90.9 0.11 3.8E-06 48.8 2.9 24 211-234 9-32 (230)
341 2ff7_A Alpha-hemolysin translo 90.9 0.14 4.9E-06 48.8 3.7 24 210-233 35-58 (247)
342 3ea0_A ATPase, para family; al 90.9 0.2 6.9E-06 47.2 4.7 37 209-245 3-41 (245)
343 1ypw_A Transitional endoplasmi 90.9 0.076 2.6E-06 59.9 2.0 51 187-237 477-538 (806)
344 3con_A GTPase NRAS; structural 90.9 0.11 3.7E-06 46.8 2.7 22 212-233 23-44 (190)
345 2ffh_A Protein (FFH); SRP54, s 90.8 0.17 5.7E-06 52.4 4.3 29 209-237 97-125 (425)
346 1puj_A YLQF, conserved hypothe 90.8 0.89 3E-05 44.1 9.4 24 210-233 120-143 (282)
347 2ixe_A Antigen peptide transpo 90.7 0.15 5.1E-06 49.4 3.7 24 210-233 45-68 (271)
348 3ld9_A DTMP kinase, thymidylat 90.7 0.25 8.5E-06 46.3 5.1 33 210-242 21-55 (223)
349 2vp4_A Deoxynucleoside kinase; 90.7 0.12 3.9E-06 48.7 2.8 25 209-233 19-43 (230)
350 2yz2_A Putative ABC transporte 90.7 0.11 3.6E-06 50.3 2.5 24 210-233 33-56 (266)
351 3io3_A DEHA2D07832P; chaperone 90.6 0.25 8.5E-06 49.7 5.3 37 209-245 17-55 (348)
352 3cmw_A Protein RECA, recombina 90.6 0.31 1.1E-05 58.7 6.9 80 210-298 1431-1518(1706)
353 2ihy_A ABC transporter, ATP-bi 90.6 0.16 5.3E-06 49.5 3.7 24 210-233 47-70 (279)
354 3t1o_A Gliding protein MGLA; G 90.6 0.14 4.8E-06 46.1 3.2 28 210-237 14-41 (198)
355 4akg_A Glutathione S-transfera 90.5 1 3.6E-05 56.8 11.7 79 211-299 1268-1346(2695)
356 2j37_W Signal recognition part 90.5 0.16 5.6E-06 53.6 4.0 28 209-236 100-127 (504)
357 2lkc_A Translation initiation 90.5 0.15 5.3E-06 45.0 3.3 24 209-232 7-30 (178)
358 2ged_A SR-beta, signal recogni 90.5 0.15 5.2E-06 46.0 3.3 24 210-233 48-71 (193)
359 1u8z_A RAS-related protein RAL 90.5 0.13 4.3E-06 44.9 2.7 22 211-232 5-26 (168)
360 1m7b_A RND3/RHOE small GTP-bin 90.4 0.13 4.5E-06 46.1 2.8 24 210-233 7-30 (184)
361 3f9v_A Minichromosome maintena 90.4 0.072 2.4E-06 57.9 1.2 48 187-234 295-351 (595)
362 2gj8_A MNME, tRNA modification 90.4 0.13 4.5E-06 45.7 2.8 23 211-233 5-27 (172)
363 2fn4_A P23, RAS-related protei 90.4 0.18 6.2E-06 44.6 3.7 25 209-233 8-32 (181)
364 1fzq_A ADP-ribosylation factor 90.4 0.12 4.2E-06 46.3 2.6 25 209-233 15-39 (181)
365 3q85_A GTP-binding protein REM 90.4 0.12 4.2E-06 45.3 2.5 21 212-232 4-24 (169)
366 2erx_A GTP-binding protein DI- 90.3 0.13 4.5E-06 45.1 2.7 21 212-232 5-25 (172)
367 1bif_A 6-phosphofructo-2-kinas 90.3 0.18 6.1E-06 53.1 4.1 29 210-238 39-67 (469)
368 1c1y_A RAS-related protein RAP 90.3 0.13 4.6E-06 44.8 2.7 21 212-232 5-25 (167)
369 3iqw_A Tail-anchored protein t 90.3 0.28 9.5E-06 49.1 5.3 37 209-245 15-51 (334)
370 1nij_A Hypothetical protein YJ 90.2 0.14 4.6E-06 51.0 3.0 25 209-233 3-27 (318)
371 2p67_A LAO/AO transport system 90.2 0.16 5.4E-06 51.0 3.5 27 209-235 55-81 (341)
372 2nzj_A GTP-binding protein REM 90.2 0.16 5.6E-06 44.7 3.2 22 211-232 5-26 (175)
373 1kao_A RAP2A; GTP-binding prot 90.2 0.14 4.7E-06 44.6 2.7 21 212-232 5-25 (167)
374 1z08_A RAS-related protein RAB 90.2 0.14 4.7E-06 45.0 2.7 23 211-233 7-29 (170)
375 3nh6_A ATP-binding cassette SU 90.1 0.17 6E-06 49.8 3.6 24 210-233 80-103 (306)
376 1nrj_B SR-beta, signal recogni 90.1 0.16 5.6E-06 46.8 3.3 24 210-233 12-35 (218)
377 3q72_A GTP-binding protein RAD 90.1 0.14 4.7E-06 44.8 2.6 21 212-232 4-24 (166)
378 2iwr_A Centaurin gamma 1; ANK 90.0 0.13 4.6E-06 45.6 2.5 23 211-233 8-30 (178)
379 1ek0_A Protein (GTP-binding pr 90.0 0.14 4.9E-06 44.7 2.7 21 212-232 5-25 (170)
380 3tqf_A HPR(Ser) kinase; transf 90.0 0.19 6.4E-06 44.9 3.3 23 211-233 17-39 (181)
381 3hdt_A Putative kinase; struct 90.0 0.17 5.8E-06 47.5 3.2 26 210-235 14-39 (223)
382 3ihw_A Centg3; RAS, centaurin, 90.0 0.14 4.9E-06 46.0 2.7 22 211-232 21-42 (184)
383 1z0j_A RAB-22, RAS-related pro 90.0 0.15 5E-06 44.7 2.7 22 212-233 8-29 (170)
384 1r8s_A ADP-ribosylation factor 89.9 0.15 5.1E-06 44.4 2.7 20 213-232 3-22 (164)
385 3cr8_A Sulfate adenylyltranfer 89.8 0.15 5.2E-06 54.6 3.1 27 210-236 369-395 (552)
386 3gqb_B V-type ATP synthase bet 89.8 0.31 1.1E-05 50.4 5.3 26 211-236 148-173 (464)
387 1g16_A RAS-related protein SEC 89.8 0.16 5.5E-06 44.4 2.8 22 211-232 4-25 (170)
388 3pqc_A Probable GTP-binding pr 89.8 0.21 7.1E-06 44.9 3.6 24 210-233 23-46 (195)
389 2cxx_A Probable GTP-binding pr 89.8 0.15 5.3E-06 45.6 2.7 22 212-233 3-24 (190)
390 3sop_A Neuronal-specific septi 89.8 0.17 5.7E-06 49.0 3.1 22 212-233 4-25 (270)
391 3fkq_A NTRC-like two-domain pr 89.7 0.24 8.1E-06 50.4 4.4 37 209-245 142-179 (373)
392 3c5c_A RAS-like protein 12; GD 89.7 0.16 5.3E-06 45.9 2.7 22 211-232 22-43 (187)
393 1ky3_A GTP-binding protein YPT 89.7 0.16 5.4E-06 45.1 2.7 24 210-233 8-31 (182)
394 1m2o_B GTP-binding protein SAR 89.7 0.16 5.6E-06 45.9 2.8 22 211-232 24-45 (190)
395 3kta_A Chromosome segregation 89.7 0.18 6E-06 45.3 3.0 23 211-233 27-49 (182)
396 2hxs_A RAB-26, RAS-related pro 89.6 0.17 5.6E-06 44.9 2.8 22 211-232 7-28 (178)
397 1r2q_A RAS-related protein RAB 89.6 0.16 5.6E-06 44.3 2.7 22 211-232 7-28 (170)
398 3llu_A RAS-related GTP-binding 89.6 0.17 5.8E-06 45.9 2.9 23 211-233 21-43 (196)
399 1wms_A RAB-9, RAB9, RAS-relate 89.6 0.16 5.6E-06 44.8 2.7 23 210-232 7-29 (177)
400 3cwq_A Para family chromosome 89.6 0.34 1.1E-05 44.8 4.9 33 212-245 2-35 (209)
401 3ch4_B Pmkase, phosphomevalona 89.6 0.23 8E-06 45.5 3.7 26 209-234 10-35 (202)
402 1z0f_A RAB14, member RAS oncog 89.5 0.17 5.7E-06 44.8 2.7 23 210-232 15-37 (179)
403 2bbs_A Cystic fibrosis transme 89.5 0.16 5.4E-06 49.8 2.7 25 210-234 64-88 (290)
404 3tw8_B RAS-related protein RAB 89.4 0.15 5.2E-06 45.1 2.3 23 210-232 9-31 (181)
405 1lw7_A Transcriptional regulat 89.4 0.18 6.1E-06 51.1 3.2 26 210-235 170-195 (365)
406 1fx0_A ATP synthase alpha chai 89.4 0.22 7.5E-06 52.2 3.8 26 210-235 163-189 (507)
407 1ny5_A Transcriptional regulat 89.4 0.27 9.4E-06 50.2 4.5 46 188-233 138-183 (387)
408 3fvq_A Fe(3+) IONS import ATP- 89.4 0.18 6.1E-06 50.9 3.0 24 210-233 30-53 (359)
409 1f6b_A SAR1; gtpases, N-termin 89.4 0.14 4.7E-06 46.8 2.1 22 211-232 26-47 (198)
410 2ck3_A ATP synthase subunit al 89.3 0.33 1.1E-05 50.9 5.1 26 210-235 162-188 (510)
411 3kkq_A RAS-related protein M-R 89.3 0.18 6E-06 45.0 2.7 24 210-233 18-41 (183)
412 2bme_A RAB4A, RAS-related prot 89.3 0.18 6.3E-06 44.9 2.8 23 210-232 10-32 (186)
413 4dsu_A GTPase KRAS, isoform 2B 89.2 0.18 6.1E-06 45.1 2.7 21 212-232 6-26 (189)
414 1upt_A ARL1, ADP-ribosylation 89.2 0.18 6.2E-06 44.2 2.7 23 210-232 7-29 (171)
415 1m8p_A Sulfate adenylyltransfe 89.2 0.19 6.6E-06 54.1 3.3 27 209-235 395-421 (573)
416 2c61_A A-type ATP synthase non 89.2 0.45 1.5E-05 49.4 5.9 85 210-298 152-258 (469)
417 3t5g_A GTP-binding protein RHE 89.1 0.19 6.6E-06 44.7 2.8 23 210-232 6-28 (181)
418 3bc1_A RAS-related protein RAB 89.1 0.18 6.3E-06 45.1 2.7 23 210-232 11-33 (195)
419 2cjw_A GTP-binding protein GEM 89.1 0.18 6.3E-06 45.7 2.7 22 211-232 7-28 (192)
420 2y8e_A RAB-protein 6, GH09086P 89.1 0.2 6.7E-06 44.3 2.8 21 212-232 16-36 (179)
421 2qm8_A GTPase/ATPase; G protei 89.1 0.22 7.4E-06 49.9 3.4 26 209-234 54-79 (337)
422 1mh1_A RAC1; GTP-binding, GTPa 89.1 0.19 6.4E-06 44.8 2.7 21 212-232 7-27 (186)
423 4dkx_A RAS-related protein RAB 89.0 0.19 6.4E-06 46.9 2.7 21 212-232 15-35 (216)
424 3cbq_A GTP-binding protein REM 89.0 0.15 5E-06 46.5 2.0 23 210-232 23-45 (195)
425 1x6v_B Bifunctional 3'-phospho 89.0 0.21 7E-06 54.2 3.4 26 209-234 51-76 (630)
426 3bwd_D RAC-like GTP-binding pr 89.0 0.19 6.5E-06 44.6 2.7 23 211-233 9-31 (182)
427 2oil_A CATX-8, RAS-related pro 88.9 0.19 6.4E-06 45.4 2.6 23 210-232 25-47 (193)
428 2obl_A ESCN; ATPase, hydrolase 88.9 0.31 1.1E-05 48.9 4.5 27 210-236 71-97 (347)
429 1gwn_A RHO-related GTP-binding 88.9 0.2 6.8E-06 46.1 2.8 24 210-233 28-51 (205)
430 2a9k_A RAS-related protein RAL 88.9 0.19 6.6E-06 44.7 2.7 23 210-232 18-40 (187)
431 2fz4_A DNA repair protein RAD2 88.9 2.4 8.1E-05 39.8 10.5 22 213-234 111-132 (237)
432 2atv_A RERG, RAS-like estrogen 88.9 0.19 6.6E-06 45.5 2.7 23 211-233 29-51 (196)
433 3tui_C Methionine import ATP-b 88.8 0.19 6.7E-06 50.7 2.9 24 210-233 54-77 (366)
434 3oes_A GTPase rhebl1; small GT 88.8 0.2 7E-06 45.6 2.8 24 210-233 24-47 (201)
435 2ew1_A RAS-related protein RAB 88.8 0.21 7E-06 45.8 2.8 23 210-232 26-48 (201)
436 2www_A Methylmalonic aciduria 88.8 0.23 7.9E-06 50.0 3.4 26 209-234 73-98 (349)
437 2efe_B Small GTP-binding prote 88.8 0.2 6.8E-06 44.4 2.7 22 211-232 13-34 (181)
438 3dz8_A RAS-related protein RAB 88.8 0.21 7.2E-06 45.0 2.8 23 211-233 24-46 (191)
439 2g6b_A RAS-related protein RAB 88.6 0.21 7.2E-06 44.2 2.7 22 211-232 11-32 (180)
440 2bov_A RAla, RAS-related prote 88.6 0.21 7E-06 45.5 2.7 23 210-232 14-36 (206)
441 1z47_A CYSA, putative ABC-tran 88.6 0.21 7.1E-06 50.4 2.9 24 210-233 41-64 (355)
442 3d31_A Sulfate/molybdate ABC t 88.6 0.2 6.9E-06 50.3 2.8 24 210-233 26-49 (348)
443 1vg8_A RAS-related protein RAB 88.6 0.25 8.5E-06 45.0 3.2 24 210-233 8-31 (207)
444 2fg5_A RAB-22B, RAS-related pr 88.5 0.22 7.5E-06 45.0 2.8 23 211-233 24-46 (192)
445 1oxx_K GLCV, glucose, ABC tran 88.5 0.19 6.5E-06 50.7 2.5 23 210-232 31-53 (353)
446 3oaa_A ATP synthase subunit al 88.4 0.58 2E-05 48.8 6.2 84 210-299 162-264 (513)
447 2gf0_A GTP-binding protein DI- 88.4 0.23 7.7E-06 44.9 2.8 23 210-232 8-30 (199)
448 2fh5_B SR-beta, signal recogni 88.4 0.21 7.4E-06 45.9 2.7 23 210-232 7-29 (214)
449 1zbd_A Rabphilin-3A; G protein 88.4 0.21 7.4E-06 45.4 2.7 24 210-233 8-31 (203)
450 3clv_A RAB5 protein, putative; 88.4 0.22 7.4E-06 45.0 2.7 23 211-233 8-30 (208)
451 3gd7_A Fusion complex of cysti 88.4 0.31 1E-05 49.8 4.0 33 210-244 47-79 (390)
452 3ug7_A Arsenical pump-driving 88.3 0.47 1.6E-05 47.7 5.4 37 209-245 25-61 (349)
453 3rlf_A Maltose/maltodextrin im 88.3 0.22 7.5E-06 50.6 2.9 24 210-233 29-52 (381)
454 1zd9_A ADP-ribosylation factor 88.3 0.22 7.6E-06 44.8 2.7 22 211-232 23-44 (188)
455 3reg_A RHO-like small GTPase; 88.3 0.22 7.6E-06 44.9 2.7 23 211-233 24-46 (194)
456 2yyz_A Sugar ABC transporter, 88.3 0.22 7.6E-06 50.2 2.9 24 210-233 29-52 (359)
457 1pui_A ENGB, probable GTP-bind 88.2 0.14 4.9E-06 46.9 1.3 23 210-232 26-48 (210)
458 2it1_A 362AA long hypothetical 88.1 0.23 7.8E-06 50.2 2.9 24 210-233 29-52 (362)
459 2q3h_A RAS homolog gene family 88.1 0.22 7.5E-06 45.2 2.5 23 210-232 20-42 (201)
460 1zj6_A ADP-ribosylation factor 88.1 0.25 8.4E-06 44.3 2.8 23 210-232 16-38 (187)
461 1byi_A Dethiobiotin synthase; 88.1 0.33 1.1E-05 45.1 3.8 27 211-237 2-29 (224)
462 3tkl_A RAS-related protein RAB 88.1 0.24 8E-06 44.7 2.7 23 210-232 16-38 (196)
463 2h17_A ADP-ribosylation factor 88.0 0.24 8.1E-06 44.2 2.7 23 211-233 22-44 (181)
464 1p9r_A General secretion pathw 88.0 0.36 1.2E-05 49.8 4.3 36 210-245 167-202 (418)
465 3igf_A ALL4481 protein; two-do 88.0 0.37 1.3E-05 48.9 4.3 35 211-245 3-37 (374)
466 2gf9_A RAS-related protein RAB 88.0 0.24 8.2E-06 44.5 2.7 22 211-232 23-44 (189)
467 2a5j_A RAS-related protein RAB 88.0 0.24 8.1E-06 44.7 2.6 22 211-232 22-43 (191)
468 1wcv_1 SOJ, segregation protei 88.0 0.31 1E-05 46.6 3.6 37 209-245 5-42 (257)
469 1g29_1 MALK, maltose transport 88.0 0.24 8.1E-06 50.3 2.9 24 210-233 29-52 (372)
470 2o52_A RAS-related protein RAB 88.0 0.24 8.1E-06 45.2 2.7 23 210-232 25-47 (200)
471 2g3y_A GTP-binding protein GEM 87.9 0.24 8.1E-06 46.0 2.6 22 211-232 38-59 (211)
472 1v43_A Sugar-binding transport 87.9 0.24 8.2E-06 50.2 2.9 23 210-232 37-59 (372)
473 2gks_A Bifunctional SAT/APS ki 87.9 0.23 8E-06 53.2 2.9 26 210-235 372-397 (546)
474 1z06_A RAS-related protein RAB 87.9 0.25 8.5E-06 44.4 2.7 23 210-232 20-42 (189)
475 4bas_A ADP-ribosylation factor 87.8 0.24 8.2E-06 44.8 2.6 24 209-232 16-39 (199)
476 1ksh_A ARF-like protein 2; sma 87.8 0.22 7.6E-06 44.5 2.3 24 210-233 18-41 (186)
477 2j1l_A RHO-related GTP-binding 87.8 0.24 8.3E-06 45.7 2.7 22 211-232 35-56 (214)
478 2p5s_A RAS and EF-hand domain 87.8 0.24 8.4E-06 45.0 2.6 23 210-232 28-50 (199)
479 1x3s_A RAS-related protein RAB 87.8 0.25 8.6E-06 44.4 2.7 23 211-233 16-38 (195)
480 2atx_A Small GTP binding prote 87.8 0.26 9E-06 44.4 2.8 23 211-233 19-41 (194)
481 2gza_A Type IV secretion syste 87.8 0.32 1.1E-05 49.2 3.7 35 211-246 176-210 (361)
482 1moz_A ARL1, ADP-ribosylation 87.7 0.2 6.9E-06 44.6 2.0 23 210-232 18-40 (183)
483 2qnr_A Septin-2, protein NEDD5 87.7 0.24 8.1E-06 48.8 2.6 21 212-232 20-40 (301)
484 2bcg_Y Protein YP2, GTP-bindin 87.7 0.27 9.1E-06 44.9 2.8 23 210-232 8-30 (206)
485 2b6h_A ADP-ribosylation factor 87.7 0.25 8.6E-06 44.7 2.6 22 211-232 30-51 (192)
486 1tq4_A IIGP1, interferon-induc 87.7 0.12 4.1E-06 53.2 0.5 24 209-232 68-91 (413)
487 2j0v_A RAC-like GTP-binding pr 87.6 0.27 9.1E-06 45.1 2.8 22 211-232 10-31 (212)
488 3q9l_A Septum site-determining 87.6 0.37 1.3E-05 45.8 3.9 35 211-245 3-38 (260)
489 4i1u_A Dephospho-COA kinase; s 87.6 0.26 8.9E-06 45.6 2.7 23 210-232 9-31 (210)
490 3thx_A DNA mismatch repair pro 87.6 0.75 2.6E-05 52.3 6.9 23 209-231 661-683 (934)
491 2qu8_A Putative nucleolar GTP- 87.6 0.29 9.8E-06 45.7 3.0 24 210-233 29-52 (228)
492 2fv8_A H6, RHO-related GTP-bin 87.6 0.27 9.3E-06 45.0 2.8 22 211-232 26-47 (207)
493 4dhe_A Probable GTP-binding pr 87.6 0.28 9.7E-06 45.3 3.0 25 209-233 28-52 (223)
494 1t9h_A YLOQ, probable GTPase E 87.5 0.25 8.5E-06 48.7 2.6 23 211-233 174-196 (307)
495 2hup_A RAS-related protein RAB 87.5 0.28 9.5E-06 44.8 2.8 23 210-232 29-51 (201)
496 3lxx_A GTPase IMAP family memb 87.5 0.31 1.1E-05 45.9 3.2 23 210-232 29-51 (239)
497 1jwy_B Dynamin A GTPase domain 87.4 0.26 8.8E-06 48.6 2.7 25 209-233 23-47 (315)
498 2gco_A H9, RHO-related GTP-bin 87.4 0.29 9.8E-06 44.6 2.8 22 211-232 26-47 (201)
499 1ega_A Protein (GTP-binding pr 87.3 0.3 1E-05 48.0 3.1 24 210-233 8-31 (301)
500 3k53_A Ferrous iron transport 87.2 0.33 1.1E-05 46.8 3.3 23 211-233 4-26 (271)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-47 Score=348.69 Aligned_cols=170 Identities=44% Similarity=0.760 Sum_probs=144.7
Q ss_pred CCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHH
Q 038826 9 SPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHEL 87 (572)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El 87 (572)
..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 458999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCceeeeeeeecCCCcccCCCCchHHHHHHhhhhcCCChhhHhhHHHHHHhhhhhcccccccccchHHHHH
Q 038826 88 VKILECKKRKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDTPQKVHKWRAALTQASNLCGWDSMKIRTEAELVD 167 (572)
Q Consensus 88 ~~~~~~~~~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~ 167 (572)
++|++|.+..+++|+||||+|+|++||+|+|+||++|.+++.+ .+.+++++|+.||+++++++||++ ..+|+++|+
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~~i~ 160 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS--GDDDSKLVD 160 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC--CSCHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec--CCCHHHHHH
Confidence 9999999888999999999999999999999999999999987 556889999999999999999998 367999999
Q ss_pred HHHHhhhhhccCCCCC
Q 038826 168 EIVKDILKKIHDIPHL 183 (572)
Q Consensus 168 ~i~~~v~~~l~~~~~~ 183 (572)
+|++.|.++++ ++|+
T Consensus 161 ~Iv~~v~~~l~-~~~~ 175 (176)
T 3jrn_A 161 KIANEISNKKT-IYAT 175 (176)
T ss_dssp HHHHHHHTTCC-----
T ss_pred HHHHHHHHHhc-CCCC
Confidence 99999999998 6554
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-47 Score=416.99 Aligned_cols=294 Identities=15% Similarity=0.099 Sum_probs=238.6
Q ss_pred ccccccccccccccccc-CCCceEEEEeecCcchHhHHHHHHHh----hcccccceEEEEeeccccccc--ccHHHHHHH
Q 038826 190 VGLDSHIQRNNSLLCVR-LPDFQMVRTWSMSGISKTDIAGAIFN----QISSQFEGWCFMANVREESKR--VELVHLRDQ 262 (572)
Q Consensus 190 vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~wv~~~~~~s~~--~~~~~l~~~ 262 (572)
|||+.++++|.++|..+ .++.++|+|+|||||||||||+++|+ +++.+|++++|++ ++.. ++...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999765 33589999999999999999999996 7889999999997 6665 488999999
Q ss_pred HHHHhhCCCC--cc-------ccchHHHHHHHhhcC-ceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhhh
Q 038826 263 IVSQILGEST--VE-------TSILPQCIKKRLQQM-NVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK 332 (572)
Q Consensus 263 il~~l~~~~~--~~-------~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~ 332 (572)
++.+++.... .. .+.+...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999986532 11 123478899999996 999999999998865 3221 169999999999999988
Q ss_pred cC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHHHcC-CcCC
Q 038826 333 YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHN-PKQI 410 (572)
Q Consensus 333 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~ 410 (572)
++ ...+|+|++|+.++|++||.+++|+... .+.+.+++.+|+++|+|+||||+++|+.|+.++. +|...+.. +...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 76 4468999999999999999999976543 4677889999999999999999999999988753 33333332 2222
Q ss_pred CcccHHHHHHHhhccCChhhHHHHh-----------hhcccCCCCCHHHHHHHHhhc-c-------------chHHHHHH
Q 038826 411 SDPDIHDMLKISYDELNYKEKDLFL-----------DIACFFNGEGRDYVKIILNNR-Y-------------LVHYGLNI 465 (572)
Q Consensus 411 ~~~~v~~~l~~Sy~~L~~~~k~~fl-----------~la~fp~~~~~~~l~~~w~~~-~-------------~~~~~l~~ 465 (572)
....+..++.+||+.||++.|.||+ |||+||++++.+ +.+|.++ . .+..+|++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 3456777888899999888888888 999999998766 7788875 2 12348999
Q ss_pred HhhCCceEee-C---CeEEecHHHHHHHHHHHhhhc
Q 038826 466 LAGKAIITIS-N---NKLQMRDLLQEMGQRVVCHES 497 (572)
Q Consensus 466 L~~~sLi~~~-~---~~~~mHdlv~~~a~~i~~~e~ 497 (572)
|+++|||+.. . ++|+|||+||++|++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999986 2 469999999999999887664
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=8.6e-47 Score=347.71 Aligned_cols=170 Identities=45% Similarity=0.792 Sum_probs=158.9
Q ss_pred CCCCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHH
Q 038826 7 SCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLH 85 (572)
Q Consensus 7 ~~~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~ 85 (572)
+++.++|||||||+|+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 44679999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-ccCceeeeeeeecCCCcccCCCCchHHHHHHhhhhcCCChhhHhhHHHHHHhhhhhcccccccccchHH
Q 038826 86 ELVKILECKK-RKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDTPQKVHKWRAALTQASNLCGWDSMKIRTEAE 164 (572)
Q Consensus 86 El~~~~~~~~-~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~ 164 (572)
||++|++|++ ..+++|+||||+|+|++||+|+|+||++|.+++.++. .+++++|+.||+++++++||++..+.++++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 9999999985 4678999999999999999999999999999998874 468999999999999999999977888999
Q ss_pred HHHHHHHhhhhhcc
Q 038826 165 LVDEIVKDILKKIH 178 (572)
Q Consensus 165 ~i~~i~~~v~~~l~ 178 (572)
+|++|+.+|+++++
T Consensus 188 ~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 188 IADKVSADIWSHIS 201 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999986
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-41 Score=402.15 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=244.3
Q ss_pred CCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh---ccccc-ceEEEEeecccccc--c
Q 038826 180 IPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ---ISSQF-EGWCFMANVREESK--R 253 (572)
Q Consensus 180 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f-~~~~wv~~~~~~s~--~ 253 (572)
..+|..++.||||+.++++|.++|....++.++|+|+||||+||||||+++|++ ...+| +.++|+. ++. .
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~ 192 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDK 192 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCc
Confidence 345566778999999999999999766667899999999999999999999986 35556 4667887 554 3
Q ss_pred ccHHHHHHHHHHHhhCCCCc--c----ccchHHHHHHHhhcC--ceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeC
Q 038826 254 VELVHLRDQIVSQILGESTV--E----TSILPQCIKKRLQQM--NVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTR 325 (572)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~--~----~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR 325 (572)
......+..++..+...... . .+.+...++..+.++ |+||||||||+..+|+.+ ++||+||||||
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEES
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcC
Confidence 34555566677777654321 1 345566677777766 999999999998877654 47999999999
Q ss_pred Cchhhhh-cCCceEEEecC-CChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHH
Q 038826 326 DKKVLDK-YGVDYVYKVEG-FNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENA 403 (572)
Q Consensus 326 ~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~ 403 (572)
++.++.. ++....+++++ |+.++|++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.++ ..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 9999854 45567899996 99999999999888432 344566799999999999999999999998765 356666
Q ss_pred HcCCcCCC-----------cccHHHHHHHhhccCChhhHHHHhhhcccCCCC--CHHHHHHHHhhc-cchHHHHHHHhhC
Q 038826 404 LHNPKQIS-----------DPDIHDMLKISYDELNYKEKDLFLDIACFFNGE--GRDYVKIILNNR-YLVHYGLNILAGK 469 (572)
Q Consensus 404 l~~l~~~~-----------~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-~~~~~~l~~L~~~ 469 (572)
++.+.... .+.+..+|.+||+.|++++|.||++||+||+++ +.+.++.+|.++ ..++.++++|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNK 421 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 66543321 145999999999999999999999999999985 789999999988 8889999999999
Q ss_pred CceEee-CCe---EEecHHHHHHHHHHHhhh
Q 038826 470 AIITIS-NNK---LQMRDLLQEMGQRVVCHE 496 (572)
Q Consensus 470 sLi~~~-~~~---~~mHdlv~~~a~~i~~~e 496 (572)
|||+.. ++. |+||+|||+++++.+.++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999987 553 999999999999997665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.7e-40 Score=365.56 Aligned_cols=275 Identities=12% Similarity=0.100 Sum_probs=221.2
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHh--hcccccce-EEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFN--QISSQFEG-WCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|++ ++..++...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 34599999999999999753 2478999999999999999999997 57888986 89998 77777777777777
Q ss_pred HHHhhCCCC------c----c---ccchHHHHHHHh---hcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCc
Q 038826 264 VSQILGEST------V----E---TSILPQCIKKRL---QQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 264 l~~l~~~~~------~----~---~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~ 327 (572)
+..+....+ + . .+.+...+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 664322110 0 0 233455666665 6799999999999998888763 699999999999
Q ss_pred hhhhhcCCceEEEec------CCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCC--CHHH
Q 038826 328 KVLDKYGVDYVYKVE------GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK--SKQH 399 (572)
Q Consensus 328 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--~~~~ 399 (572)
.++..+.....|.|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 988644333456677 999999999999883 322 22334444 999999999999999887 7888
Q ss_pred HHHHHcCCcCCCcccHHHHHHHhhccCChhh-HHHHhhhcccCCCC--CHHHHHHHHhhc--cchHHHHHHHhhCCceEe
Q 038826 400 WENALHNPKQISDPDIHDMLKISYDELNYKE-KDLFLDIACFFNGE--GRDYVKIILNNR--YLVHYGLNILAGKAIITI 474 (572)
Q Consensus 400 w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~-k~~fl~la~fp~~~--~~~~l~~~w~~~--~~~~~~l~~L~~~sLi~~ 474 (572)
|... ....+..+|++||+.||+++ |.||++||+||+++ +.+.++.+|.++ ..++.+|++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 9763 34679999999999999999 99999999999976 668899999986 357889999999999998
Q ss_pred e--CCeEEecHHHHHHH
Q 038826 475 S--NNKLQMRDLLQEMG 489 (572)
Q Consensus 475 ~--~~~~~mHdlv~~~a 489 (572)
. .++|+||||+++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 7 56899999999855
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=348.00 Aligned_cols=296 Identities=16% Similarity=0.189 Sum_probs=230.2
Q ss_pred CCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc---ccccc-eEEEEeeccccccc--c
Q 038826 181 PHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI---SSQFE-GWCFMANVREESKR--V 254 (572)
Q Consensus 181 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~wv~~~~~~s~~--~ 254 (572)
..|..++.||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+ .++|++ ++.. .
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~----~~~~~~~ 193 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS----VGKQDKS 193 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE----EESCCHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE----CCCCchH
Confidence 345566789999999999999998655568999999999999999999999854 67895 789987 4332 1
Q ss_pred cHHHHHHHHHHHhhCCCC------ccccchHHHHHHHhhc--CceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCC
Q 038826 255 ELVHLRDQIVSQILGEST------VETSILPQCIKKRLQQ--MNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~------~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~ 326 (572)
.+...+..++..+..... ...+.....++..+.+ +++||||||+|+...++.+ ++|++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCC
Confidence 222223334444442111 1134456677777766 7899999999997766543 468999999999
Q ss_pred chhhhhcCCceEEEe---cCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCCCHHHHHHH
Q 038826 327 KKVLDKYGVDYVYKV---EGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENA 403 (572)
Q Consensus 327 ~~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~ 403 (572)
+.++..++ ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|++|+.+. .+|...
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 98877653 345665 4899999999999988542 223345789999999999999999999998764 357766
Q ss_pred HcCCcCCC-----------cccHHHHHHHhhccCChhhHHHHhhhcccCCCC--CHHHHHHHHhhc-cchHHHHHHHhhC
Q 038826 404 LHNPKQIS-----------DPDIHDMLKISYDELNYKEKDLFLDIACFFNGE--GRDYVKIILNNR-YLVHYGLNILAGK 469 (572)
Q Consensus 404 l~~l~~~~-----------~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-~~~~~~l~~L~~~ 469 (572)
++.+.... ...+..++..||+.||++.|.||++||+||++. +.+.+..+|..+ ..+..++++|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 66543321 247999999999999999999999999999874 678899999887 7788899999999
Q ss_pred CceEee-C---CeEEecHHHHHHHHHH
Q 038826 470 AIITIS-N---NKLQMRDLLQEMGQRV 492 (572)
Q Consensus 470 sLi~~~-~---~~~~mHdlv~~~a~~i 492 (572)
|||+.. + .+|+||+++|+++++.
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999976 2 2699999999999987
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=2.6e-30 Score=233.72 Aligned_cols=118 Identities=18% Similarity=0.389 Sum_probs=111.0
Q ss_pred CCCcccEEecCcccccccchHHHHHHHHhhCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHH
Q 038826 9 SPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHEL 87 (572)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El 87 (572)
+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|++|++|.||++||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 468999999999999 55799999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCceeeeeeeecCCCcccCCCCchHHHHHHh
Q 038826 88 VKILECKKRKGQIVMPVFYNVDPSDVRNQTGSFGDAFVEH 127 (572)
Q Consensus 88 ~~~~~~~~~~~~~v~Pify~v~p~~vr~q~~~~~~~~~~~ 127 (572)
..++++....+++|+||||+|+|++||+|.|.|+++|...
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 9999988777789999999999999999999999988754
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=2.3e-25 Score=198.26 Aligned_cols=106 Identities=20% Similarity=0.366 Sum_probs=80.1
Q ss_pred CCCCCCcccEEecCcccccccchHHHHHHHHhh--CCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchh
Q 038826 6 SSCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCR--EKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTW 82 (572)
Q Consensus 6 ~~~~~~~~dvFis~~~~D~~~~f~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 82 (572)
|+...+.|||||||+++|+ .|+.+|+.+|++ .|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3445678999999999995 479999999998 599999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhccCceeeeeeeecCCCcc
Q 038826 83 CLHELVKILECKKRKGQIVMPVFYNVDPSDV 113 (572)
Q Consensus 83 c~~El~~~~~~~~~~~~~v~Pify~v~p~~v 113 (572)
|..|+..++.+......+||||||+|+++++
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 9999999999873344478899999986553
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=1.5e-22 Score=181.22 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=91.4
Q ss_pred CCCcccEEecCcccccccchHHH-HHHHHhhC--CCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhH
Q 038826 9 SPRKYDVFLSFRGEDTRNNFTSH-LFAAFCRE--KIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCL 84 (572)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~f~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 84 (572)
..+.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 69997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hccCceeeeeeee-cCCCc
Q 038826 85 HELVKILECK-KRKGQIVMPVFYN-VDPSD 112 (572)
Q Consensus 85 ~El~~~~~~~-~~~~~~v~Pify~-v~p~~ 112 (572)
.|+..|+.+. +..+++||||||. +++..
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~ 109 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKA 109 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhh
Confidence 9999988543 5567789999997 55543
No 10
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=5.5e-22 Score=179.45 Aligned_cols=101 Identities=18% Similarity=0.325 Sum_probs=91.3
Q ss_pred CCCCcccEEecCcccccccchHHHHHHHHhhC--CCeEEEcC-CCCCCCCccHHHHHHhh-hcceEEEEeecCcccchhh
Q 038826 8 CSPRKYDVFLSFRGEDTRNNFTSHLFAAFCRE--KIKTFIDE-QLKKGDDIPSALLNAIE-ESKISVIIFSKGYASSTWC 83 (572)
Q Consensus 8 ~~~~~~dvFis~~~~D~~~~f~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~s~~c 83 (572)
+..+.|||||||+++| .+||.+|+.+|+++ |+++|+|+ |+.+|+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3467899999999999 67999999999985 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hccCceeeeeeeecCC
Q 038826 84 LHELVKILECK-KRKGQIVMPVFYNVDP 110 (572)
Q Consensus 84 ~~El~~~~~~~-~~~~~~v~Pify~v~p 110 (572)
..|+..|+.+. ...+++||||||+.-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999876 4455689999998543
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.84 E-value=4.5e-22 Score=182.84 Aligned_cols=100 Identities=16% Similarity=0.338 Sum_probs=86.4
Q ss_pred CCCCCcccEEecCcccccccchHHH-HHHHHhh--CCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccchh
Q 038826 7 SCSPRKYDVFLSFRGEDTRNNFTSH-LFAAFCR--EKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASSTW 82 (572)
Q Consensus 7 ~~~~~~~dvFis~~~~D~~~~f~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 82 (572)
....+.|||||||+++| .+||.+ |+.+|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 34568899999999999 479986 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hccCceeeeeeeec
Q 038826 83 CLHELVKILECK-KRKGQIVMPVFYNV 108 (572)
Q Consensus 83 c~~El~~~~~~~-~~~~~~v~Pify~v 108 (572)
|..|+..|+.+. +..+++||||||+-
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999999998654 45567899999983
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.82 E-value=5e-21 Score=172.94 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=88.9
Q ss_pred CcccEEecCcccccc---------cchHHHHHH-HHh-hCCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcc
Q 038826 11 RKYDVFLSFRGEDTR---------NNFTSHLFA-AFC-REKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYA 78 (572)
Q Consensus 11 ~~~dvFis~~~~D~~---------~~f~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 78 (572)
+.|||||||+++|+. .+||.+|.. .|+ +.|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 369999999999973 568888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hccCceeeeeeeecCC
Q 038826 79 -SSTWCLHELVKILECK-KRKGQIVMPVFYNVDP 110 (572)
Q Consensus 79 -~s~~c~~El~~~~~~~-~~~~~~v~Pify~v~p 110 (572)
+|.||..|+..++.+. ..+++.||||+|.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 6667899999987444
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.78 E-value=6.3e-18 Score=173.47 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=180.1
Q ss_pred CCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccc------
Q 038826 180 IPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKR------ 253 (572)
Q Consensus 180 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~------ 253 (572)
+.++..+..|+||+.+++.|.+.+..+ +++.|+|++|+|||||+++++++.. ++|+. ....
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~----~~~~~~~~~~ 71 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID----CRELYAERGH 71 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE----HHHHHHTTTC
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE----eecccccccC
Confidence 455666778999999999999988753 6899999999999999999998752 66776 2221
Q ss_pred ccHHHHHHHHHHHhhC----------------CCCc----cccchHHHHHHHhhc-CceEEEEecCCChhh---------
Q 038826 254 VELVHLRDQIVSQILG----------------ESTV----ETSILPQCIKKRLQQ-MNVCIILDKVDKFGH--------- 303 (572)
Q Consensus 254 ~~~~~l~~~il~~l~~----------------~~~~----~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~~--------- 303 (572)
.+...+...+...+.. .... ........+.+.... ++.+|||||++....
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 1444555555544321 0000 022233444444432 499999999965432
Q ss_pred hHHHhcCCCCCCCCcEEEEEeCCchhhhh-----------cC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHH
Q 038826 304 SEYLTGGLSRFGHGSRVIVTTRDKKVLDK-----------YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLS 371 (572)
Q Consensus 304 ~~~l~~~~~~~~~gs~IIvTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 371 (572)
+..+..... ..++.++|+|++....... .+ ....+++.+|+.+|+.+++....-..... -..+.+
T Consensus 152 ~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~ 228 (350)
T 2qen_A 152 LALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEI 228 (350)
T ss_dssp HHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHH
T ss_pred HHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHH
Confidence 222222111 1247889999887643211 11 23478999999999999997653211111 124567
Q ss_pred HHHHHHhCCCchhHHHHhhHhcC-CCHHHHHHHHcCCcCCCcccHHHHHHHhhccC---ChhhHHHHhhhcccCCCCCHH
Q 038826 372 DNVVDYANGSSLALNVLRSSFYR-KSKQHWENALHNPKQISDPDIHDMLKISYDEL---NYKEKDLFLDIACFFNGEGRD 447 (572)
Q Consensus 372 ~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L---~~~~k~~fl~la~fp~~~~~~ 447 (572)
..++..++|+|+++..++..+.. .+...+...+ .+.+...+.-.+..+ ++..+.++..+|+ ...+..
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~ 299 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRT-------LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWS 299 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHH-------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHH
Confidence 89999999999999998876432 2322221110 011222222223333 7889999999998 234666
Q ss_pred HHHHHHh-----hc-cchHHHHHHHhhCCceEeeCCeEEe-cHHHHHHHH
Q 038826 448 YVKIILN-----NR-YLVHYGLNILAGKAIITISNNKLQM-RDLLQEMGQ 490 (572)
Q Consensus 448 ~l~~~w~-----~~-~~~~~~l~~L~~~sLi~~~~~~~~m-Hdlv~~~a~ 490 (572)
.+...+. .. -....+++.|++.+||...++.|.+ |++++++.+
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 6666552 22 3456789999999999987788876 678887653
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.76 E-value=1.3e-17 Score=171.47 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=173.5
Q ss_pred CCCCCCCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccc--ccccHH
Q 038826 180 IPHLGNSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREES--KRVELV 257 (572)
Q Consensus 180 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s--~~~~~~ 257 (572)
+.+...+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+... ... ...+..
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCCHH
Confidence 4455566789999999999998 764 589999999999999999999876432 5677621 110 011223
Q ss_pred HHHHHHHHHhh-------------CCC-----C----cc-----ccchHHHHHHHhhc---CceEEEEecCCChh-----
Q 038826 258 HLRDQIVSQIL-------------GES-----T----VE-----TSILPQCIKKRLQQ---MNVCIILDKVDKFG----- 302 (572)
Q Consensus 258 ~l~~~il~~l~-------------~~~-----~----~~-----~~~~~~~l~~~L~~---kr~LlVLDdv~~~~----- 302 (572)
.+...+...+. ... + .. .......+.+.+.. ++++|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 33333333221 000 0 00 01123333344432 48999999996532
Q ss_pred hhHHHhcCCCCCCCCcEEEEEeCCchhhhh-----------cC-CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHH
Q 038826 303 HSEYLTGGLSRFGHGSRVIVTTRDKKVLDK-----------YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVL 370 (572)
Q Consensus 303 ~~~~l~~~~~~~~~gs~IIvTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 370 (572)
++..++..+....++.++|+|++....... .+ ....+++.+|+.+++.+++.............
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 222222111111246789999997653221 11 13578999999999999998754211211222
Q ss_pred HHHHHHHhCCCchhHHHHhhHhcC-CCHHHHHHH-HcCCcCCCcccHHHHHH-Hhh--ccCChhhHHHHhhhcccCCCCC
Q 038826 371 SDNVVDYANGSSLALNVLRSSFYR-KSKQHWENA-LHNPKQISDPDIHDMLK-ISY--DELNYKEKDLFLDIACFFNGEG 445 (572)
Q Consensus 371 ~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~v~~~l~-~Sy--~~L~~~~k~~fl~la~fp~~~~ 445 (572)
...|+..|+|+|+++..++..+.. .+...|... .+. ....+...+. +.+ ..|++..+.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY----AKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH----HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH----HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 178999999999999999877642 233333221 110 0011111222 111 1678899999999998 2 3 5
Q ss_pred HHHHHHHH----h--hc-cchHHHHHHHhhCCceEeeCCeEE-ecHHHHHHH
Q 038826 446 RDYVKIIL----N--NR-YLVHYGLNILAGKAIITISNNKLQ-MRDLLQEMG 489 (572)
Q Consensus 446 ~~~l~~~w----~--~~-~~~~~~l~~L~~~sLi~~~~~~~~-mHdlv~~~a 489 (572)
...+.... . .. -....+++.|++.+||...++.|+ -|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 66665432 2 12 345678999999999988777787 478988764
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.69 E-value=1.4e-16 Score=167.43 Aligned_cols=282 Identities=13% Similarity=0.018 Sum_probs=172.9
Q ss_pred CCCCCccccccccccccccc-ccc--C--CCceEEEE--eecCcchHhHHHHHHHhhccccc-----c-eEEEEeecccc
Q 038826 184 GNSEDLVGLDSHIQRNNSLL-CVR--L--PDFQMVRT--WSMSGISKTDIAGAIFNQISSQF-----E-GWCFMANVREE 250 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~wv~~~~~~ 250 (572)
..+..|+||+.+++.+...| ... . ...+.+.| +|++|+||||||+++++.....+ . .++|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34478999999999999988 421 1 23456667 99999999999999999765432 2 356776 4
Q ss_pred cccccHHHHHHHHHHHhhCCCCcc---ccchHHHHHHHhh--cCceEEEEecCCCh--------hhhHHHhcCCCCC---
Q 038826 251 SKRVELVHLRDQIVSQILGESTVE---TSILPQCIKKRLQ--QMNVCIILDKVDKF--------GHSEYLTGGLSRF--- 314 (572)
Q Consensus 251 s~~~~~~~l~~~il~~l~~~~~~~---~~~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~~~~l~~~~~~~--- 314 (572)
....+...++..++..++...+.. .......+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 455677788888888886543211 2234455555554 67999999999653 2333333222111
Q ss_pred C--CCcEEEEEeCCchhhhhc---------CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhC----
Q 038826 315 G--HGSRVIVTTRDKKVLDKY---------GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---- 379 (572)
Q Consensus 315 ~--~gs~IIvTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---- 379 (572)
+ .+..+|+||+...+.... .....+.+++|+.+++.++|...+........-..+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345588888765432111 1123389999999999999976542111111122467889999999
Q ss_pred --CCchhHHHHhhHh------cCC---CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCC----CC
Q 038826 380 --GSSLALNVLRSSF------YRK---SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN----GE 444 (572)
Q Consensus 380 --GlPLal~~~g~~L------~~~---~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~----~~ 444 (572)
|.|..+..+.... .+. +.+.+...+..... ...+.-++..||+..+.++..++.+.. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997655444321 111 33444444332210 223445678899999999999987541 23
Q ss_pred CHHHHHHHHh--h-c---------cchHHHHHHHhhCCceEee
Q 038826 445 GRDYVKIILN--N-R---------YLVHYGLNILAGKAIITIS 475 (572)
Q Consensus 445 ~~~~l~~~w~--~-~---------~~~~~~l~~L~~~sLi~~~ 475 (572)
+...+...+. + . .....+++.|++.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 4444333221 1 1 1134689999999999875
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=5.4e-14 Score=146.19 Aligned_cols=274 Identities=14% Similarity=0.042 Sum_probs=174.3
Q ss_pred CCccccccccccccccccc--cCCCceEEEEeecCcchHhHHHHHHHhhcccc--------cceEEEEeecccccccc-c
Q 038826 187 EDLVGLDSHIQRNNSLLCV--RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ--------FEGWCFMANVREESKRV-E 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~wv~~~~~~s~~~-~ 255 (572)
+.|+||+.+++++..+|.. .....+.+.|+|++|+||||||+.+++..... ....+|+. ..... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCC
Confidence 6899999999999988764 22345689999999999999999999976443 23456665 44444 6
Q ss_pred HHHHHHHHHHHhhCCCCc-c---ccchHHHHHHHhhcCceEEEEecCCChh------h-hHHHhcCCCCCCCCcEEEEEe
Q 038826 256 LVHLRDQIVSQILGESTV-E---TSILPQCIKKRLQQMNVCIILDKVDKFG------H-SEYLTGGLSRFGHGSRVIVTT 324 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~-~---~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~-~~~l~~~~~~~~~gs~IIvTT 324 (572)
...+...++..+.+.... . .......+.+.+..++.+|||||++... . +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 777888888877443221 1 2344566677777766699999996532 2 33343322 578899999
Q ss_pred CCchhhhhc------CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhC---CCch-hHHHHhhHh--
Q 038826 325 RDKKVLDKY------GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---GSSL-ALNVLRSSF-- 392 (572)
Q Consensus 325 R~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~~L-- 392 (572)
+........ .....+.+++++.++..++|...+...-....-..+..+.+++.++ |.|. |+..+-...
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 875321111 1123899999999999999998753211111122345677888887 8877 444333322
Q ss_pred c-C---CCHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCCCCCH-HHHHHHHhh---c----cchH
Q 038826 393 Y-R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNGEGR-DYVKIILNN---R----YLVH 460 (572)
Q Consensus 393 ~-~---~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~~~~-~~l~~~w~~---~----~~~~ 460 (572)
. + -+.+.+..+++.. ....+..++..|++.++..+..++....+-+. +....+... . ....
T Consensus 252 a~~~~~i~~~~v~~~~~~~-------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDY-------EQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFS 324 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred hcCCCccCHHHHHHHHHHH-------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 1 2566666665543 12456677889999988888878761110111 111222211 1 1234
Q ss_pred HHHHHHhhCCceEee
Q 038826 461 YGLNILAGKAIITIS 475 (572)
Q Consensus 461 ~~l~~L~~~sLi~~~ 475 (572)
.+++.|.++|+|...
T Consensus 325 ~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 325 DIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 689999999999875
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=9e-14 Score=144.26 Aligned_cols=281 Identities=15% Similarity=0.068 Sum_probs=170.0
Q ss_pred CCCCCcccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhccccc---ceEEEEeecccccccccHHH
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF---EGWCFMANVREESKRVELVH 258 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~wv~~~~~~s~~~~~~~ 258 (572)
..+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+ ...+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 34578999999999999888752 33466899999999999999999999765543 2456666 344445666
Q ss_pred HHHHHHHHhhCCCCcc---ccchHHHHHHHhh--cCceEEEEecCCCh------hhhHHHhcCCCC-CCCCcEEEEEeCC
Q 038826 259 LRDQIVSQILGESTVE---TSILPQCIKKRLQ--QMNVCIILDKVDKF------GHSEYLTGGLSR-FGHGSRVIVTTRD 326 (572)
Q Consensus 259 l~~~il~~l~~~~~~~---~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~l~~~~~~-~~~gs~IIvTTR~ 326 (572)
+...++..++...+.. .......+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 6666666654332211 2233444555554 34899999999642 334444322211 1245667888876
Q ss_pred chhhhhcC-------CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhC---CCchhHHH-HhhHhc--
Q 038826 327 KKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---GSSLALNV-LRSSFY-- 393 (572)
Q Consensus 327 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPLal~~-~g~~L~-- 393 (572)
......+. ....+.+++++.++..+++...+........-..+....+++.++ |.|..+.. +.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64322221 125899999999999999987653111111223456677888887 99984433 322211
Q ss_pred ---C---CCHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCC-C---CCHHHHHHH-------Hhhc
Q 038826 394 ---R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN-G---EGRDYVKII-------LNNR 456 (572)
Q Consensus 394 ---~---~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~-~---~~~~~l~~~-------w~~~ 456 (572)
+ -+.+.+..++... ....+.-++..|++..+..+..++...+ + +....+.+. ....
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 1445555444432 1235666778899988888888875432 2 223322221 1111
Q ss_pred ----cchHHHHHHHhhCCceEee
Q 038826 457 ----YLVHYGLNILAGKAIITIS 475 (572)
Q Consensus 457 ----~~~~~~l~~L~~~sLi~~~ 475 (572)
.....+++.|.+.++|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1234689999999999864
No 18
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=1.4e-13 Score=142.84 Aligned_cols=279 Identities=14% Similarity=0.050 Sum_probs=171.6
Q ss_pred CCCCcccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhccccc------ceEEEEeecccccccccH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF------EGWCFMANVREESKRVEL 256 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~s~~~~~ 256 (572)
.+..|+||+.+++.+..++... ....+.+.|+|++|+||||||+.+++.....+ ...+|++ .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 3478999999999999988543 23466899999999999999999999764432 2345665 4555677
Q ss_pred HHHHHHHHHHhhCCCCcc---ccchHHHHHHHh--hcCceEEEEecCCChh-------hhHHHhcCCCCC--CCCcEEEE
Q 038826 257 VHLRDQIVSQILGESTVE---TSILPQCIKKRL--QQMNVCIILDKVDKFG-------HSEYLTGGLSRF--GHGSRVIV 322 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~---~~~~~~~l~~~L--~~kr~LlVLDdv~~~~-------~~~~l~~~~~~~--~~gs~IIv 322 (572)
..+...++..++...+.. .......+.+.+ .+++.+||||+++... .+..+....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 778888888876543311 223345555555 3458899999997543 122233222111 34567788
Q ss_pred EeCCchhh--------hhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhC---CCch-hHHHHhh
Q 038826 323 TTRDKKVL--------DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---GSSL-ALNVLRS 390 (572)
Q Consensus 323 TTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~ 390 (572)
||+..... ..+ ....+.+++++.++..+++...+-.......-..+..+.+++.++ |.|- ++.++..
T Consensus 173 ~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88765321 111 114788999999999999987753210011112235677888887 9994 3333332
Q ss_pred Hhc-----C---CCHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCCC---CCHHHHHHHHhh----
Q 038826 391 SFY-----R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNG---EGRDYVKIILNN---- 455 (572)
Q Consensus 391 ~L~-----~---~~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~~---~~~~~l~~~w~~---- 455 (572)
... + -+.+.+..++... ....+.-++..|+++.+..++.++....+ +....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 221 1 1556666555432 12345667889999999888877744333 233333332211
Q ss_pred ---c----cchHHHHHHHhhCCceEee
Q 038826 456 ---R----YLVHYGLNILAGKAIITIS 475 (572)
Q Consensus 456 ---~----~~~~~~l~~L~~~sLi~~~ 475 (572)
. .....+++.|...|++...
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 LGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 1345689999999999974
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=167.76 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=90.2
Q ss_pred CCCcccEEecCcccccccchH-HHHHHHHhh-----CCCeEEEcC-CCCCCCCccHHHHHHhhhcceEEEEeecCcccch
Q 038826 9 SPRKYDVFLSFRGEDTRNNFT-SHLFAAFCR-----EKIKTFIDE-QLKKGDDIPSALLNAIEESKISVIIFSKGYASST 81 (572)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~f~-~~l~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~ 81 (572)
..+.|||||||+++|. .|| .+|...|+. .|+++|+++ |+.||+.+.++|.+||++||++|+|+|++|+.|.
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 4678999999999995 577 779999985 699999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hccCceeeeeeeecCC
Q 038826 82 WCLHELVKILECK-KRKGQIVMPVFYNVDP 110 (572)
Q Consensus 82 ~c~~El~~~~~~~-~~~~~~v~Pify~v~p 110 (572)
||..|+..++.+. +..+++||||||+--|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999888766 5667889999998444
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=6.8e-13 Score=137.99 Aligned_cols=301 Identities=12% Similarity=0.065 Sum_probs=184.9
Q ss_pred CCCCcccccccccccccccccc----CCCceEEEEeecCcchHhHHHHHHHhhccccc-ceEEEEeecccccccccHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR----LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-EGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~s~~~~~~~l 259 (572)
.++.++||+.+++.+..++... ....+.+.|+|.+|+||||||+.+++...... ...+++. .+...+...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988752 11234899999999999999999999765542 3456665 4455567778
Q ss_pred HHHHHHHhhCCCCcc---ccchHHHHHHHhh--cCceEEEEecCCCh--hhhHHHhcCCCCCC----CCcEEEEEeCCch
Q 038826 260 RDQIVSQILGESTVE---TSILPQCIKKRLQ--QMNVCIILDKVDKF--GHSEYLTGGLSRFG----HGSRVIVTTRDKK 328 (572)
Q Consensus 260 ~~~il~~l~~~~~~~---~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IIvTTR~~~ 328 (572)
...++..++...+.. .......+...+. +++.+||||+++.. ..+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 888887775433211 2233444444443 56889999999653 44555544433221 3677888887664
Q ss_pred hhhhcC-------CceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHh---------CCCchhHHHHhhHh
Q 038826 329 VLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYA---------NGSSLALNVLRSSF 392 (572)
Q Consensus 329 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~g~~L 392 (572)
...... ....+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 332221 12368999999999999998775321111122346778899999 78875544333221
Q ss_pred -c-----CC---CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccC---CC--CCHHHHHHHHhh---
Q 038826 393 -Y-----RK---SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF---NG--EGRDYVKIILNN--- 455 (572)
Q Consensus 393 -~-----~~---~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp---~~--~~~~~l~~~w~~--- 455 (572)
. +. +.+....++...... .+.-.+..|+.+.+.++..++.+. .+ .....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 11 333333333322111 122335678888888888787654 22 344555444332
Q ss_pred ----c----cchHHHHHHHhhCCceEee-C-------CeE-------EecHHHHHHHHHHHhhh
Q 038826 456 ----R----YLVHYGLNILAGKAIITIS-N-------NKL-------QMRDLLQEMGQRVVCHE 496 (572)
Q Consensus 456 ----~----~~~~~~l~~L~~~sLi~~~-~-------~~~-------~mHdlv~~~a~~i~~~e 496 (572)
. .....+++.|.++++|... . |++ ..|++++.+...+..+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 0 1234589999999999985 3 322 25677777777776554
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=1.2e-11 Score=119.18 Aligned_cols=195 Identities=11% Similarity=0.000 Sum_probs=117.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
...++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+....+-+ .. ... ...+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~-----~~---~~~-~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC-----GV---CDN-CREIEQ 91 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC-----SC---SHH-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-----cc---cHH-HHHHhc
Confidence 3469999999999999887543 2358899999999999999999986543321100000 00 000 000000
Q ss_pred HhhCCCCcc---ccchHHHHHHHh--------hcCceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCCchhhh-
Q 038826 266 QILGESTVE---TSILPQCIKKRL--------QQMNVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD- 331 (572)
Q Consensus 266 ~l~~~~~~~---~~~~~~~l~~~L--------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~- 331 (572)
......... .......+...+ .+++.+||+||++. ...++.+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000000000 001111111111 34678999999964 4455555554444446788898887653221
Q ss_pred h-cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHh
Q 038826 332 K-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (572)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 392 (572)
. ......+++++++.++..+++...+...... -..+....|++.|+|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1123578999999999999998876543221 224567899999999999988766543
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=2.8e-10 Score=107.88 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=114.2
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cc-eEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FE-GWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
...++|++..++.+.+++.... .+.+.|+|.+|+|||+||+.+++.+... +. ..+.+. .+...+...+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGIDVVRHKI 89 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE----TTCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec----cccccChHHHHHHH
Confidence 3579999999999999887653 3348999999999999999999875333 22 223333 22222222222211
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCchhh-hh-cCCceEE
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DK-YGVDYVY 339 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~v~-~~-~~~~~~~ 339 (572)
........ ...+++.+||+||++.. ...+.+...+.....++++|+||+..... .. ......+
T Consensus 90 -~~~~~~~~------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 90 -KEFARTAP------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp -HHHHTSCC------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred -HHHhcccC------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 11111000 01256889999999754 33444443333334678889888765321 11 1123478
Q ss_pred EecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 340 KVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 340 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
++++++.++..+++...+...... -..+....+++.++|.|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998876432221 2235677889999999997654433
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.1e-09 Score=110.45 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=113.4
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cc-eEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FE-GWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
...++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.+... +. ..+++. .+...+...+ +.+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i-~~~ 92 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV-RNQ 92 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-HTH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-HHH
Confidence 3579999999999999887553 2338999999999999999999975332 22 234444 2222222222 222
Q ss_pred HHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCchh-hhh-cCCceE
Q 038826 264 VSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKV-LDK-YGVDYV 338 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~v-~~~-~~~~~~ 338 (572)
+..+.... ..+ .+++.++|+||++.. ...+.+...+.....++.+|+||....- ... ......
T Consensus 93 ~~~~~~~~------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 93 IKHFAQKK------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHHHBC------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHhcc------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 22211000 001 345889999999753 3333443333333457788888866432 111 112358
Q ss_pred EEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHHhhH
Q 038826 339 YKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRSS 391 (572)
Q Consensus 339 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~~ 391 (572)
+++.+++.++..+++...+...... -..+....+++.++|.|. |+..+...
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999998876432211 223567889999999995 45554433
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.2e-08 Score=102.95 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-c-eEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-E-GWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
..+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.... . ..+.+. .+...+...+. ..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~-~~ 96 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EK 96 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTCHHHHHTTH-HH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccccCchHHHH-HH
Confidence 457999999999999888765 333489999999999999999998753322 1 223333 11111111111 11
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCchhh-hhc-CCceEE
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DKY-GVDYVY 339 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~v~-~~~-~~~~~~ 339 (572)
+.......+ ...+++.++|+|+++.. ...+.+...+.....++++|+||...... ... .....+
T Consensus 97 ~~~~~~~~~------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 97 VKEFARTKP------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHHHSCC------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHHHhhCC------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 111100000 01256789999999753 34455544443334678888888764321 111 112478
Q ss_pred EecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhh
Q 038826 340 KVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (572)
Q Consensus 340 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 390 (572)
.+.+++.++..+++...+..... .-..+....+++.++|.|..+..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999998877643221 12245678899999999987654433
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.84 E-value=1.5e-08 Score=102.47 Aligned_cols=259 Identities=12% Similarity=0.069 Sum_probs=147.2
Q ss_pred CCCCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
....|+|++..++.+...+... ......+.|+|.+|+|||+||+.+++.....| .++. .+.......+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~~~l~~ 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPGDLAA 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCChHHHHH
Confidence 4467999999999888877531 12345788999999999999999998764322 3343 111111111111
Q ss_pred HHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCC------------------CCCcEEE
Q 038826 262 QIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRF------------------GHGSRVI 321 (572)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~------------------~~gs~II 321 (572)
.+.. . ..++.+|+||+++... ....+...+... .++..+|
T Consensus 83 ----~l~~---------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 83 ----ILAN---------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----HHTT---------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HHHH---------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1100 0 1246689999997542 223232111100 0235566
Q ss_pred EEeCCchhh-hhc--CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhcCC---
Q 038826 322 VTTRDKKVL-DKY--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK--- 395 (572)
Q Consensus 322 vTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--- 395 (572)
.||...... ... .....+.+.+++.++..+++...+..... .-..+....+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 666543221 111 12357899999999999998877643222 1224667899999999998877665543211
Q ss_pred ------CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccC--CCCCHHHHHHHHhhc-cchHHHHHH-
Q 038826 396 ------SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF--NGEGRDYVKIILNNR-YLVHYGLNI- 465 (572)
Q Consensus 396 ------~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp--~~~~~~~l~~~w~~~-~~~~~~l~~- 465 (572)
+.+....++ ..+..++..|++.++..+..+.... +......+...+.-. ......++.
T Consensus 221 ~~~~~i~~~~~~~~~------------~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 221 AGEEVITRERALEAL------------AALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp TSCSCCCHHHHHHHH------------HHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred hcCCCCCHHHHHHHH------------HHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 222222222 2222344567777777777665332 234566666665443 223333444
Q ss_pred HhhCCceEeeCCeEEecHH
Q 038826 466 LAGKAIITISNNKLQMRDL 484 (572)
Q Consensus 466 L~~~sLi~~~~~~~~mHdl 484 (572)
+++.++|........+-+.
T Consensus 289 ~i~~~li~~~~~g~~~~~~ 307 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTEL 307 (324)
T ss_dssp HHHTTSEEEETTEEEECHH
T ss_pred HHHhcchhcCCccceecHH
Confidence 8889999876333344444
No 26
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=4.3e-08 Score=100.98 Aligned_cols=192 Identities=10% Similarity=0.019 Sum_probs=111.1
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
..+++|++..++.+...+..+. ....+.|+|.+|+||||+|+.+++.+....... ............+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDNCREIEQ 84 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHHHHHHHT
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHHHHHHhc
Confidence 3569999999999998887543 245788999999999999999998654321100 000000000011110
Q ss_pred HhhCC------CCccccchHHHHHHHh-----hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhh
Q 038826 266 QILGE------STVETSILPQCIKKRL-----QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLD 331 (572)
Q Consensus 266 ~l~~~------~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~ 331 (572)
..... ...........+.+.+ .+++.+||+||++.. ...+.+...+.....+..+|++|.... +..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00000 0000011122333333 245789999999643 344555444433345677777776443 211
Q ss_pred h-cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 332 K-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
. ......+++.+++.++..+++...+-..+. .-..+....+++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 112367899999999999999876532221 1224567889999999999876554
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.72 E-value=7.2e-08 Score=96.89 Aligned_cols=176 Identities=14% Similarity=0.109 Sum_probs=110.8
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc-cccc-eEEEEeecccccccccHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS-SQFE-GWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~-~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
..+++|++..++.+.+++..+. .+.+.|+|.+|+|||++|+.+++.+. ..+. ..+.+. .+...+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~------- 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGI------- 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE----TTSTTCT-------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe----CccccCh-------
Confidence 3569999999999999887643 33389999999999999999998752 2222 122233 1111000
Q ss_pred HHHhhCCCCccccchHHHHHHH-----h-hcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhhh-c
Q 038826 264 VSQILGESTVETSILPQCIKKR-----L-QQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDK-Y 333 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~-----L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~~-~ 333 (572)
+.....+... + .+++.++|+|+++.. ...+.+...+.....++++|+||.... +... .
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111 1 256789999999643 345556655555556788888876543 2111 1
Q ss_pred CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 334 GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
.....+.+.+++.++..+++...+-.... .-..+....+++.++|.|..+...
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 12357899999999999998877633221 122456788889999998865443
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=8e-08 Score=96.09 Aligned_cols=164 Identities=9% Similarity=0.002 Sum_probs=98.5
Q ss_pred Ccccccccccccccccccc--CCCceEEEEeecCcchHhHHHHHHHhhccccc-----c--eEEEEeecccccccccHHH
Q 038826 188 DLVGLDSHIQRNNSLLCVR--LPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-----E--GWCFMANVREESKRVELVH 258 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~--~~~wv~~~~~~s~~~~~~~ 258 (572)
.+.|||+|+++|...|... ....+.+.|+|++|+|||++++.+++.+.... + ..+.++ .....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHH
Confidence 3789999999998888652 33567889999999999999999999764321 1 234555 334456677
Q ss_pred HHHHHHHHhhCCCCccccchHHHHHHHh------hcCceEEEEecCCChhhhHHHhcCCC---CCCCCcEEEEEeCCchh
Q 038826 259 LRDQIVSQILGESTVETSILPQCIKKRL------QQMNVCIILDKVDKFGHSEYLTGGLS---RFGHGSRVIVTTRDKKV 329 (572)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~l~~~L------~~kr~LlVLDdv~~~~~~~~l~~~~~---~~~~gs~IIvTTR~~~v 329 (572)
++..|+.++.+.... .......+.+.+ .+++++++||+++...+-+.+...+. .......||.++-..+.
T Consensus 97 ~~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 97 LYEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 788888888654321 112223333322 35679999999976432222221111 01112223333332211
Q ss_pred ---------hhhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 330 ---------LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 330 ---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
...++ ...+.+++++.++-.+++..++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2478899999999999988775
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.63 E-value=2.4e-07 Score=94.19 Aligned_cols=260 Identities=12% Similarity=0.088 Sum_probs=147.5
Q ss_pred CCCCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
....++|++..++.+..++... ......|.|+|.+|+|||+||+.+++.....| +.+. .+.......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~----~~~~~~~~~--- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA----APMIEKSGD--- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE----GGGCCSHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec----chhccchhH---
Confidence 3457999999999998888753 22345689999999999999999998765443 2222 111111111
Q ss_pred HHHHHhhCCCCccccchHHHHHHHh--hcCceEEEEecCCCh--hhhHHHhcCCCCC------------------CCCcE
Q 038826 262 QIVSQILGESTVETSILPQCIKKRL--QQMNVCIILDKVDKF--GHSEYLTGGLSRF------------------GHGSR 319 (572)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gs~ 319 (572)
+...+ ..+..+|+||+++.. .....+...+... .++..
T Consensus 97 --------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 97 --------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 235678899998643 2222222211110 11345
Q ss_pred EEEEeCCchhh-hh--cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHhc---
Q 038826 320 VIVTTRDKKVL-DK--YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFY--- 393 (572)
Q Consensus 320 IIvTTR~~~v~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~--- 393 (572)
+|.||...... .. ......+.+++++.++..+++...+-... ..-..+....+++.+.|.|-.+..+...+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 66665543221 11 12346899999999999999987764322 112245677888899999965554433221
Q ss_pred ---CC---CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhcccCC-CCCHHHHHHHHhhc-cchHHHHH-
Q 038826 394 ---RK---SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN-GEGRDYVKIILNNR-YLVHYGLN- 464 (572)
Q Consensus 394 ---~~---~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la~fp~-~~~~~~l~~~w~~~-~~~~~~l~- 464 (572)
+. +.+.....+ ..+..+...++..++..+..++-... ......+...+.-. -.....++
T Consensus 235 ~~~~~~~i~~~~~~~~~------------~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 235 DVNDEEIITEKRANEAL------------NSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp HHTTCSEECHHHHHHHH------------HHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred HhhcCCccCHHHHHHHH------------HHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 11 222222222 12233444566555666665554422 23566666665544 34444566
Q ss_pred HHhhCCceEee-CCeEEecHHHHHH
Q 038826 465 ILAGKAIITIS-NNKLQMRDLLQEM 488 (572)
Q Consensus 465 ~L~~~sLi~~~-~~~~~mHdlv~~~ 488 (572)
.|++.++|... .|++.-..-+..+
T Consensus 303 ~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHcCceecCCCcccccHHHHHHh
Confidence 89999999877 5665444444333
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=3e-08 Score=95.23 Aligned_cols=174 Identities=13% Similarity=0.054 Sum_probs=99.2
Q ss_pred CCCCccccc---cccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLD---SHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
..++|+|.+ ..++.+..++... ..+.+.|+|.+|+||||||+.+++........+.|+. .+....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~----~~~~~~------ 93 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP----LGIHAS------ 93 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----GGGGGG------
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----HHHHHH------
Confidence 445788743 3344444444332 3568899999999999999999997655444456665 211000
Q ss_pred HHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--h--hHHHhcCCCCC-CCCc-EEEEEeCCchh------
Q 038826 262 QIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--H--SEYLTGGLSRF-GHGS-RVIVTTRDKKV------ 329 (572)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-~IIvTTR~~~v------ 329 (572)
... ... +.+ .++.+||+||++... . .+.+...+... ..+. ++|+||+...-
T Consensus 94 --------~~~----~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 94 --------IST----ALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp --------SCG----GGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred --------HHH----HHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 000 000 011 346789999996432 1 22222211100 1122 47777764321
Q ss_pred ---hhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHh
Q 038826 330 ---LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 330 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 389 (572)
...+.....+++++++.++..+++...+..... .-..+....+++.++|.+-.+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111112268999999999999999887643221 1224567888999999887765443
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=1.3e-07 Score=93.75 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=102.3
Q ss_pred CCCCCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc
Q 038826 184 GNSEDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK 252 (572)
Q Consensus 184 ~~~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~ 252 (572)
.....++|.+..+++|.+.+... ....+.+.|+|.+|+|||+||+.+++.....|- .+. ..+...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHH
Confidence 34467999999999888877432 123567899999999999999999997654332 222 111100
Q ss_pred cccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCC--CC
Q 038826 253 RVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLS--RF 314 (572)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~--~~ 314 (572)
.. .... .......+.......+.+|+||+++.. ..+..++..+. ..
T Consensus 90 ~~-~~~~---------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 KF-IGEG---------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CS-TTHH---------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred hc-cchH---------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00 0000 011112222233456789999999643 11222222111 12
Q ss_pred CCCcEEEEEeCCchhhh-----hcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC-chhHHH
Q 038826 315 GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNV 387 (572)
Q Consensus 315 ~~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 387 (572)
..+..||.||....... .......+.++.++.++..+++...+........ .....++..+.|. |-.|..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHH
Confidence 24667788887543322 1123457899999999999999877643221111 1145667777764 434443
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=4.6e-08 Score=90.08 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...++||+.+++++.+.+... ..+.+.|+|.+|+|||+||+.+++.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999988763 345688999999999999999998653
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.45 E-value=2e-06 Score=88.14 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCCCCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHH
Q 038826 162 EAELVDEIVKDILKKIHDIPHLGNSEDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 162 e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~ 231 (572)
+...++.+...+..+.+ +..-..++|.+..++.|.+.+.. .....+.|.|+|.+|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~~~----~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP----PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCCSC----CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC----CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 44555556555544432 33345799999998888877642 11235678999999999999999999
Q ss_pred hhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHH-HHHHHhhcCceEEEEecCCCh---------
Q 038826 232 NQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQ-CIKKRLQQMNVCIILDKVDKF--------- 301 (572)
Q Consensus 232 ~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~--------- 301 (572)
+.....| +.+. ..+..... ......... .+......++.+|+||+++..
T Consensus 139 ~~~~~~~---~~i~-~~~l~~~~-----------------~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 139 SQSGATF---FSIS-ASSLTSKW-----------------VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHTTCEE---EEEE-GGGGCCSS-----------------TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHcCCeE---EEEe-hHHhhccc-----------------cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 8764322 2333 11111000 000001111 112222356789999999532
Q ss_pred ----hhhHHHhcCCC----CCCCCcEEEEEeCCchhhh-h--cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHH
Q 038826 302 ----GHSEYLTGGLS----RFGHGSRVIVTTRDKKVLD-K--YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVL 370 (572)
Q Consensus 302 ----~~~~~l~~~~~----~~~~gs~IIvTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 370 (572)
..+..++..+. ....+..||.||....... . -.....+.++..+.++..+++...+-..... -..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHH
Confidence 11222222111 1123455666665432211 1 1234577889999999888887765322211 12346
Q ss_pred HHHHHHHhCC-CchhHHHHhh
Q 038826 371 SDNVVDYANG-SSLALNVLRS 390 (572)
Q Consensus 371 ~~~i~~~~~G-lPLal~~~g~ 390 (572)
...+++.+.| .|-.|..+..
T Consensus 276 l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 7788888888 4455655544
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.45 E-value=1.8e-07 Score=98.64 Aligned_cols=180 Identities=10% Similarity=0.068 Sum_probs=106.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccce--EEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEG--WCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 287 (572)
...+.|+|.+|+||||||+.+++.+...++. ++++. . ..+...+...+... ....+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~------~~~~~~~~~~~~~~-------~~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFLNDLVDSMKEG-------KLNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----H------HHHHHHHHHHHHTT-------CHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----H------HHHHHHHHHHHHcc-------cHHHHHHHhc
Confidence 5678999999999999999999977655432 34454 1 12233343333221 1223444444
Q ss_pred cCceEEEEecCCChh----hhHHHhcCCCC-CCCCcEEEEEeCCch---------hhhhcCCceEEEecCCChhhHHHHH
Q 038826 288 QMNVCIILDKVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDKK---------VLDKYGVDYVYKVEGFNYRESLEIF 353 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (572)
.+.-+|++||++... ..+.+...+.. ...|..||+||.+.. +...+....++.+++++.++-.+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 467899999995332 22223222110 124678999987632 1222222357889999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhH------hcCC--CHHHHHHHHcCCc
Q 038826 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSS------FYRK--SKQHWENALHNPK 408 (572)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~------L~~~--~~~~w~~~l~~l~ 408 (572)
.+.+-...... ..+....|++.++|.+-.+..+-.. +.++ +.+.++.++..+.
T Consensus 273 ~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 273 RKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 88764322111 1234678888999988655433222 1232 6777777777654
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=6.9e-07 Score=96.23 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=104.6
Q ss_pred CCCccccccccccccccccccC---------------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRL---------------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREE 250 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~ 250 (572)
..+++|++..++++.++|.... ...+.+.|+|++|+||||+|+.+++... ++ .+.+. .
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~ 110 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----A 110 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----T
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----C
Confidence 3578999999999988886410 1246899999999999999999999773 22 23333 2
Q ss_pred cccccHHHHHHHHHHHhhCCCC--ccccchHHHHHHHhhcCceEEEEecCCChh-----hhHHHhcCCCCCCCCcEEEEE
Q 038826 251 SKRVELVHLRDQIVSQILGEST--VETSILPQCIKKRLQQMNVCIILDKVDKFG-----HSEYLTGGLSRFGHGSRVIVT 323 (572)
Q Consensus 251 s~~~~~~~l~~~il~~l~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIvT 323 (572)
+...... +....+........ ........ .....+++.+|++|+++... .+..+...+.. .+..||++
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 2222221 22222221111110 00111100 00113567899999996431 12333322221 23345555
Q ss_pred eCCch---hhhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCC-CchhHHHHh
Q 038826 324 TRDKK---VLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG-SSLALNVLR 389 (572)
Q Consensus 324 TR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~g 389 (572)
+.+.. +.........+.+++++.++..+.+...+....... ..+....|++.++| ++-++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44322 222222345789999999999999887764432111 12346788899988 445555544
No 36
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.9e-06 Score=87.73 Aligned_cols=192 Identities=11% Similarity=0.105 Sum_probs=108.6
Q ss_pred CCCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc--cc-eEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ--FE-GWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~-~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
....++|++..++.+..++..+. ...+.|+|.+|+||||+|+.+++.+... +. ....+. .+.......+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~~~- 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIVR- 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHHT-
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHHHH-
Confidence 34579999999999998887653 2238899999999999999999875421 22 122232 22212222221
Q ss_pred HHHHHhhCCCC-ccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhhhc-CCc
Q 038826 262 QIVSQILGEST-VETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVD 336 (572)
Q Consensus 262 ~il~~l~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~~~-~~~ 336 (572)
..+........ ..... .....-.+++-+|++|+++.. .....+...+.......++|++|.... +.... ...
T Consensus 108 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp THHHHHHHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHHHhhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 11111111100 00000 000111234569999998643 233344433332334667777765432 21111 112
Q ss_pred eEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHH
Q 038826 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 337 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
..+.+.+++.++..+.+...+..... .-..+....|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 47889999999999988876533221 122456789999999999865433
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=9.1e-07 Score=86.18 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=96.3
Q ss_pred CCccccccccccccccccc---c-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLLCV---R-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
.+++|.+..++.+.+++.. . ....+.+.|+|.+|+|||+||+.+++.....| +.+. .........-
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhccC
Confidence 4577777766666544321 0 12345688999999999999999999764332 2232 1111000000
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh-----------------hhhHHHhcCCCC--CCCC
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF-----------------GHSEYLTGGLSR--FGHG 317 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~--~~~g 317 (572)
.........+.......+.+|++|+++.. ..+..++..+.. ...+
T Consensus 82 ----------------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 82 ----------------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ----------------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00011112223333456789999999753 112233322111 1235
Q ss_pred cEEEEEeCCchhhh----hc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHH
Q 038826 318 SRVIVTTRDKKVLD----KY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (572)
Q Consensus 318 s~IIvTTR~~~v~~----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 388 (572)
..||.||....... .. .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 56677775543211 11 23467889999999999998877643222 11222234678888888754 44433
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=1.6e-06 Score=85.14 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=89.2
Q ss_pred CCccccccccccccc-------cccc-cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHH
Q 038826 187 EDLVGLDSHIQRNNS-------LLCV-RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVH 258 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~ 258 (572)
..++|.+..++.+.. .+.. .....+.+.|+|.+|+|||+||+.+++.....| +.+. .+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~----~~~------ 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC----SPD------ 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE----CGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe----CHH------
Confidence 356777666555544 2221 123467899999999999999999999743322 1222 111
Q ss_pred HHHHHHHHhhCCCCcc-ccchHHHHHHHhhcCceEEEEecCCCh------------hhhHHHhcCCC---CCCCCcEEEE
Q 038826 259 LRDQIVSQILGESTVE-TSILPQCIKKRLQQMNVCIILDKVDKF------------GHSEYLTGGLS---RFGHGSRVIV 322 (572)
Q Consensus 259 l~~~il~~l~~~~~~~-~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~~~~l~~~~~---~~~~gs~IIv 322 (572)
.+.+..... .......+......+..+|+||+++.. ..++.+...+. ..+....||.
T Consensus 100 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 100 -------KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 000000000 011112222233456789999998542 11233332222 1233445677
Q ss_pred EeCCchhhhh---c-CCceEEEecCCCh-hhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC
Q 038826 323 TTRDKKVLDK---Y-GVDYVYKVEGFNY-RESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (572)
Q Consensus 323 TTR~~~v~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 381 (572)
||........ . .....+.+++++. ++-.+++.... . -..+....+++.+.|.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 7776644332 1 1246788999988 55555554421 1 1234567888888884
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=1.8e-06 Score=87.07 Aligned_cols=177 Identities=10% Similarity=0.053 Sum_probs=95.7
Q ss_pred CCCcc-ccccc--cccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHH
Q 038826 186 SEDLV-GLDSH--IQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 186 ~~~~v-GR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
.+.|+ |.... ...+...+..+......+.|+|++|+||||||+.+++.....-...++++ . ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHH
Confidence 34565 54332 22333333333223457889999999999999999997643322334554 1 122223
Q ss_pred HHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----hhHHHhcCCCC-CCCCcEEEEEeCCchh--------
Q 038826 263 IVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDKKV-------- 329 (572)
Q Consensus 263 il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIvTTR~~~v-------- 329 (572)
+...+... ....+...+. +..+|++||++... ..+.+...+.. ...|..||+||.+...
T Consensus 80 ~~~~~~~~-------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 80 MVEHLKKG-------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHHHHT-------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHHHHcC-------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 33322211 1122223332 46799999996432 12222221110 1245678888764321
Q ss_pred -hhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchh
Q 038826 330 -LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 330 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 384 (572)
...+....++++++ +.++-.+++...+...... -..+....+++.+ |.+-.
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 12222235789999 9999999998876432221 1245567788888 76543
No 40
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.33 E-value=1.6e-06 Score=91.28 Aligned_cols=195 Identities=11% Similarity=0.110 Sum_probs=110.3
Q ss_pred CCCCcccccccc---ccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHH
Q 038826 185 NSEDLVGLDSHI---QRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRD 261 (572)
Q Consensus 185 ~~~~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~ 261 (572)
.-.+++|.+..+ ..+...+..+ ....+.|+|.+|+||||||+.+++.....|.. +. ....+...+.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~ir- 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKEIR- 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHHHH-
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHHHH-
Confidence 346799999888 5566666544 34678999999999999999999977554422 11 1111222221
Q ss_pred HHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEE-EeCCchh--hh-hcCC
Q 038826 262 QIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIV-TTRDKKV--LD-KYGV 335 (572)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIv-TTR~~~v--~~-~~~~ 335 (572)
.++.. .......+++.+|++|+++.. ...+.|+..+.. ....+|. ||.+... .. ....
T Consensus 93 ~~~~~--------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 93 EAIER--------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHHHH--------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHHHH--------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 11111 011112457889999999754 233334433332 1233443 5555421 11 1122
Q ss_pred ceEEEecCCChhhHHHHHHhhhhcCC-----CCCCchHHHHHHHHHHhCCCchhHHHHhhHh----c----C---CCHHH
Q 038826 336 DYVYKVEGFNYRESLEIFCYYAFRQN-----HCPGDLLVLSDNVVDYANGSSLALNVLRSSF----Y----R---KSKQH 399 (572)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L----~----~---~~~~~ 399 (572)
..++.+++++.++..+++.+.+-... ....-..+....+++.++|.+-.+..+-..+ . + -+.+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~ 236 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPEL 236 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHH
Confidence 35788999999999999887653211 1111234567888888999877654333222 1 1 25666
Q ss_pred HHHHHcC
Q 038826 400 WENALHN 406 (572)
Q Consensus 400 w~~~l~~ 406 (572)
...++..
T Consensus 237 v~~~l~~ 243 (447)
T 3pvs_A 237 LTEIAGE 243 (447)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 6666665
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.32 E-value=6.6e-06 Score=84.39 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=104.3
Q ss_pred CCCccccccccccc---cccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHH
Q 038826 186 SEDLVGLDSHIQRN---NSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQ 262 (572)
Q Consensus 186 ~~~~vGR~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~ 262 (572)
...|+|++..++.+ ...+..+....+.+.|+|++|+|||+||+.+++......+. +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 45799999887764 44444333234689999999999999999999977543221 112211101112222233333
Q ss_pred HHHHhhCC--------------------------------CCccccchHHHHHHHh-----hcC----ceEEEEecCCCh
Q 038826 263 IVSQILGE--------------------------------STVETSILPQCIKKRL-----QQM----NVCIILDKVDKF 301 (572)
Q Consensus 263 il~~l~~~--------------------------------~~~~~~~~~~~l~~~L-----~~k----r~LlVLDdv~~~ 301 (572)
.+....+. ...........+.... .++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 32221100 0000111111121111 123 359999999754
Q ss_pred --hhhHHHhcCCCCCCCCcEEEEEeCC-----------------chhhhhcCCceEEEecCCChhhHHHHHHhhhhcCCC
Q 038826 302 --GHSEYLTGGLSRFGHGSRVIVTTRD-----------------KKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH 362 (572)
Q Consensus 302 --~~~~~l~~~~~~~~~gs~IIvTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 362 (572)
+....+...+...... .++++|.. +.+... ...+.+++++.++..+++...+-....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3344444444333233 34444431 112222 245799999999999999877643222
Q ss_pred CCCchHHHHHHHHHHhC-CCchhHHHH
Q 038826 363 CPGDLLVLSDNVVDYAN-GSSLALNVL 388 (572)
Q Consensus 363 ~~~~~~~~~~~i~~~~~-GlPLal~~~ 388 (572)
.-..+....+++.+. |.|-.+..+
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 122456788888887 777655433
No 42
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=2.1e-06 Score=87.56 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=103.3
Q ss_pred CCccccccccccccccc-cccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeec------------c-----
Q 038826 187 EDLVGLDSHIQRNNSLL-CVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANV------------R----- 248 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~------------~----- 248 (572)
.+++|.+..++.+.+++ ..+. ... +.|+|..|+||||+|+.++..+...-.+.+.+... .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 56899999999999888 5432 233 89999999999999999988532211111111000 0
Q ss_pred ---c--cccc-ccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh--hhHHHhcCCCCCCCCcEE
Q 038826 249 ---E--ESKR-VELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG--HSEYLTGGLSRFGHGSRV 320 (572)
Q Consensus 249 ---~--~s~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~I 320 (572)
. .+.. .......+.++..+..... ..... .+ ..+.+++-++|||++...+ ..+.+...+.....++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcc--ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 0 0000 0000012222222211110 00000 00 0023467799999997542 233333322222346778
Q ss_pred EEEeCCch-hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCCCCch-HHHHHHHHHHhCCCchhHHHHh
Q 038826 321 IVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDL-LVLSDNVVDYANGSSLALNVLR 389 (572)
Q Consensus 321 IvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g 389 (572)
|++|.+.. +.... .....+++++++.++..+.+...+-..... -. .+....|++.++|.+-.+..+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 87776532 22211 123678999999999999998776332211 11 3557788899999887654433
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.32 E-value=5.7e-06 Score=83.42 Aligned_cols=181 Identities=17% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCCcccccccccccccccc----------ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLC----------VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
-..++|.+..++.|.+.+. ......+-|.|+|.+|+|||+||+.+++.....| +.+. .+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~----~~---- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS----SS---- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE----HH----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc----hH----
Confidence 3568888888887776662 1112245789999999999999999999754432 2222 10
Q ss_pred HHHHHHHHHHHhhCCCCccccchHH-HHHHHhhcCceEEEEecCCChhh-------------hHHHhcC---CCCCCCCc
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQ-CIKKRLQQMNVCIILDKVDKFGH-------------SEYLTGG---LSRFGHGS 318 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~~-------------~~~l~~~---~~~~~~gs 318 (572)
.+ .....+ ..+.... .+......++.+|+||+++.... ...++.. +.....+.
T Consensus 86 --~l----~~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 --DL----VSKWMG----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp --HH----HTTTGG----GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred --HH----hhcccc----hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 100000 0111111 12222244678999999974311 2222221 11223456
Q ss_pred EEEEEeCCchhhhh---cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC-chhHHHHh
Q 038826 319 RVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLR 389 (572)
Q Consensus 319 ~IIvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 389 (572)
.||.||........ -.....+.++..+.++-.+++..++...... -.......+++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66667765432211 0244577889999999999998876332211 1234567888888874 43444333
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.28 E-value=4.4e-06 Score=84.21 Aligned_cols=176 Identities=10% Similarity=0.108 Sum_probs=101.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
-.+++|.+..++.+.+++..+. ...++.+.|.+|+|||++|+.+++.+... .+.++ .+. .+...+ +..+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~~-~~~~~i-~~~~~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GSD-CKIDFV-RGPLT 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TTT-CCHHHH-HTHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----ccc-cCHHHH-HHHHH
Confidence 4679999999999998887543 34678899999999999999999876422 23343 121 222222 22111
Q ss_pred HhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh---hhHHHhcCCCCCCCCcEEEEEeCCchhh-hhc-CCceEEE
Q 038826 266 QILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG---HSEYLTGGLSRFGHGSRVIVTTRDKKVL-DKY-GVDYVYK 340 (572)
Q Consensus 266 ~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IIvTTR~~~v~-~~~-~~~~~~~ 340 (572)
....... ..+++.+|++|+++... ..+.|...+.....++++|+||....-. ... .....++
T Consensus 95 ~~~~~~~-------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 95 NFASAAS-------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HHHHBCC-------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred HHHhhcc-------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 1110000 12367899999998654 3444443333223466788887654321 110 0124789
Q ss_pred ecCCChhhHHHHH-------HhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 341 VEGFNYRESLEIF-------CYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 341 l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+++++.++-.+++ ...+....... ...+....+++.++|.+-.+
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHH
Confidence 9999988743332 22221111111 11266778888888876643
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=7.9e-06 Score=81.17 Aligned_cols=184 Identities=16% Similarity=0.064 Sum_probs=100.6
Q ss_pred CCCCCCcccccccccccccccccc----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCVR----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK 252 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~ 252 (572)
+..-..++|.+..++.+.+.+... ....+.+.|+|++|+||||||+.+++.....| +.+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 334467999999888887776321 11246789999999999999999998764332 2222 111000
Q ss_pred cccHHHHHHHHHHHhhCCCCccccchHH-HHHHHhhcCceEEEEecCCChh-------------hhHHHhc---CCCC--
Q 038826 253 RVELVHLRDQIVSQILGESTVETSILPQ-CIKKRLQQMNVCIILDKVDKFG-------------HSEYLTG---GLSR-- 313 (572)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~---~~~~-- 313 (572)
........... .+......++.+|++|+++... ....++. ..+.
T Consensus 93 -----------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 -----------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -----------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -----------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 00000011111 1222224567899999995431 1111221 1111
Q ss_pred CCCCcEEEEEeCCchhhhh-c--CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHHh
Q 038826 314 FGHGSRVIVTTRDKKVLDK-Y--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLR 389 (572)
Q Consensus 314 ~~~gs~IIvTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g 389 (572)
.+.+..||.||........ . .....+.++..+.++..+++...+-..... -..+....+++.+.|.+- +|..+.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1234566767765432111 0 134567788888888888887665332211 123456788899999876 554443
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.27 E-value=1.1e-05 Score=85.19 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCCCCCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc
Q 038826 183 LGNSEDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK 252 (572)
Q Consensus 183 ~~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~ 252 (572)
...-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++.... .-|+. ++.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~ 201 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISS 201 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeH
Confidence 33446789999888888765521 1123467999999999999999999997621 11222 111
Q ss_pred cccHHHHHHHHHHHhhCCCCccccchHHHHH-HHhhcCceEEEEecCCCh-------------hhhHHHhcCCCCC---C
Q 038826 253 RVELVHLRDQIVSQILGESTVETSILPQCIK-KRLQQMNVCIILDKVDKF-------------GHSEYLTGGLSRF---G 315 (572)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~---~ 315 (572)
. ++ .....+. .+.....+. ..-..++.+|+||+++.. .....++..+... .
T Consensus 202 ~-~l-------~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 202 S-DL-------VSKWLGE----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp C---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred H-HH-------Hhhhcch----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1 11 1111111 112222222 223457889999999754 1234455444322 3
Q ss_pred CCcEEEEEeCCchhhhh---cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc-hhHHHHh
Q 038826 316 HGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLR 389 (572)
Q Consensus 316 ~gs~IIvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g 389 (572)
.+..||.||........ -.....+.++..+.++-.++|..+....... -.......|++.+.|.. -.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666767754432111 1244578888888888888888775322211 11345678888888853 3444443
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.26 E-value=1.5e-05 Score=79.57 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
.+++|.+..++.|.+.+... ....+.|.|+|.+|+|||+||+.+++.....| +.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------
Confidence 46888888777777665421 12356799999999999999999999764322 2222
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCC--CCCC
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSR--FGHG 317 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~~~g 317 (572)
...+ .....+... ......+.......+.+|+||+++... ....++..+.. ...+
T Consensus 82 ~~~l----~~~~~g~~~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 82 GPEL----LTMWFGESE---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHHHTTCT---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred hHHH----HhhhcCchH---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1112 222222211 122233333345578999999997421 12223222211 1235
Q ss_pred cEEEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCCC-CCCchHHHHHHHHHHhCCCchh
Q 038826 318 SRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSSLA 384 (572)
Q Consensus 318 s~IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa 384 (572)
..||.||...... ........+.++..+.++-.+++....-.... ...+ ...++..+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 6677777654322 11124467899999999988888766532221 1112 23555667776654
No 48
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.24 E-value=1.3e-05 Score=81.93 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=99.3
Q ss_pred CCCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++.....| +.+. .+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~----~~---- 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS----SS---- 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE----HH----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee----HH----
Confidence 35688988888887766521 111234688999999999999999999764332 1222 11
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHH-HHHhhcCceEEEEecCCChh-------------hhHHHhcCC---CCCCCCc
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCI-KKRLQQMNVCIILDKVDKFG-------------HSEYLTGGL---SRFGHGS 318 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~---~~~~~gs 318 (572)
.+ .....+. .+.....+ ......++.+|+||+++... ....++..+ .....+.
T Consensus 119 --~l----~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 --DL----VSKWMGE----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp --HH----HSCC-------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred --HH----hhhhcch----HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 11 1000000 11112222 22224578899999997432 122232211 1112455
Q ss_pred EEEEEeCCchhhh---hcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC-chhHHHHh
Q 038826 319 RVIVTTRDKKVLD---KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLR 389 (572)
Q Consensus 319 ~IIvTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 389 (572)
.||.||....... .-.....+.++..+.++-.+++..+........ .......|++.+.|. |-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666765442211 013456788999999999999887763322111 134567888888885 33444443
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.20 E-value=2.2e-05 Score=79.11 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHHhhc-ccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIFNQI-SSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~wv~~~~~~s~~~~ 255 (572)
.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++.. ...| +.+. ..+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHH----
Confidence 4566666666655544321 11234678999999999999999999976 2222 2222 10000
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHH-HhhcCceEEEEecCCChh-------------hhHHHhcCC---CCCCCCc
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKK-RLQQMNVCIILDKVDKFG-------------HSEYLTGGL---SRFGHGS 318 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~---~~~~~gs 318 (572)
.......+.....+.. .-..++.+|++|+++... ....++..+ .....+.
T Consensus 84 -------------~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 -------------SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0000001111222222 224567899999997541 112222211 1122455
Q ss_pred EEEEEeCCchhhhh---cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHHhh
Q 038826 319 RVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRS 390 (572)
Q Consensus 319 ~IIvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 390 (572)
.||.||........ -.....+.++..+.++-.+++..+.-..... -.......|++.+.|..- .|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56666654322111 1344678899999999999988765322211 123456788888888743 3554443
No 50
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.18 E-value=3.1e-06 Score=84.63 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=84.2
Q ss_pred Ccccccccccccccccccc-------------CCCceEEEEeecCcchHhHHHHHHHhhcccccc----eEEEEeecccc
Q 038826 188 DLVGLDSHIQRNNSLLCVR-------------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFE----GWCFMANVREE 250 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~wv~~~~~~ 250 (572)
.++|.+..++.|.+.+... ......+.|+|.+|+|||+||+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 3677777666666544311 223457899999999999999999886533211 222232 1000
Q ss_pred cccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCC-----------ChhhhHHHhcCCCCCCCCc
Q 038826 251 SKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVD-----------KFGHSEYLTGGLSRFGHGS 318 (572)
Q Consensus 251 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs 318 (572)
... ........+...+ ..+..+|++|+++ +......|...+.....+.
T Consensus 111 -----------------~~~---~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 111 -----------------VGQ---YIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp -----------------CCS---STTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred -----------------hhh---cccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 000 0011111122222 1245699999997 3333445544444334567
Q ss_pred EEEEEeCCch----------hhhhcCCceEEEecCCChhhHHHHHHhhhh
Q 038826 319 RVIVTTRDKK----------VLDKYGVDYVYKVEGFNYRESLEIFCYYAF 358 (572)
Q Consensus 319 ~IIvTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (572)
.||.||.... +... ....+.+++++.++-.+++...+-
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7888875432 2222 236789999999999999887763
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.16 E-value=1.3e-05 Score=83.10 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=99.5
Q ss_pred CCCCcccccccccccccccccc----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCVR----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV 254 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~ 254 (572)
.-..++|.+..++.|...+... ....+-|.|+|.+|+|||+||+.+++.....| +.+. ......
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~-- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLTS-- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhhc--
Confidence 3467999999998888777321 11246789999999999999999998754332 2222 111100
Q ss_pred cHHHHHHHHHHHhhCCCCccccchHHH-HHHHhhcCceEEEEecCCCh-------------hhhHHHhcCC----CCCCC
Q 038826 255 ELVHLRDQIVSQILGESTVETSILPQC-IKKRLQQMNVCIILDKVDKF-------------GHSEYLTGGL----SRFGH 316 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~----~~~~~ 316 (572)
.. .+. ....... +.......+.+|+||+++.. .....++..+ .....
T Consensus 187 ---~~--------~g~----~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 ---KY--------VGE----GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred ---cc--------cch----HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 000 0111111 12222345679999999643 0111222111 11123
Q ss_pred CcEEEEEeCCchhhhh---cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCch-hHHHHhh
Q 038826 317 GSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRS 390 (572)
Q Consensus 317 gs~IIvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 390 (572)
...||.||........ -.....+.++..+.++-.+++...+-..... -..+....+++.+.|..- +|..+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556666654322111 1234568899999999999988776332221 123456788888888654 5555443
No 52
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.14 E-value=2.6e-05 Score=79.00 Aligned_cols=94 Identities=10% Similarity=-0.046 Sum_probs=62.5
Q ss_pred cCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhhhc-CCceEEEecCCChhhHHHHHHhhhhcCCCC
Q 038826 288 QMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHC 363 (572)
Q Consensus 288 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (572)
+++-++|+|+++.. +..+.|+..+.....++.+|++|.+.. +.... .....+++++++.++..+.+....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------ 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------
Confidence 45779999999753 344555554444445777777776543 32221 223578999999999999888764
Q ss_pred CCchHHHHHHHHHHhCCCchhHHHH
Q 038826 364 PGDLLVLSDNVVDYANGSSLALNVL 388 (572)
Q Consensus 364 ~~~~~~~~~~i~~~~~GlPLal~~~ 388 (572)
.-..+.+..+++.++|.|..+..+
T Consensus 181 -~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 181 -TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112345678999999999766443
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.07 E-value=3.5e-06 Score=77.01 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++||+.+++.+.+.+... ..+.+.|+|.+|+|||+||+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999888753 345678999999999999999998653
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=4.4e-06 Score=73.72 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=36.1
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999988888775433233457899999999999999999854
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.97 E-value=1.5e-05 Score=84.78 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=99.5
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..++|.+..+++|.+++... ....+-|.|+|.+|+|||+||+.+++.....| +.+. ..+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~------ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPE------ 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chH------
Confidence 46899999999888877542 23356789999999999999999998764332 2222 111
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh-------------hhhHHHhcCCC--CCCCCcEE
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF-------------GHSEYLTGGLS--RFGHGSRV 320 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~--~~~~gs~I 320 (572)
+...+.+ .........+.....+++.+|+||+++.. .....|+..+. ....+..|
T Consensus 274 -------l~~~~~g---~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -------IMSKLAG---ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -------HHTSCTT---HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -------hhhhhcc---hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1100000 00111222333444567889999999411 11122222211 11235566
Q ss_pred EEEeCCchh-----hhhcCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCC-chhHHHH
Q 038826 321 IVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVL 388 (572)
Q Consensus 321 IvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 388 (572)
|.||..... .........+.++..+.++-.++|..++-....... ....+++..+.|. +-.|..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 667665422 111234567899999999999999877632221111 1134566666664 4334433
No 56
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=3.7e-05 Score=78.01 Aligned_cols=178 Identities=11% Similarity=0.122 Sum_probs=99.3
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cce-EEEEeecccccccccHHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEG-WCFMANVREESKRVELVHLRDQIV 264 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~wv~~~~~~s~~~~~~~l~~~il 264 (572)
..++|.+..++.|...+..+ +...+.++|++|+||||+|+.+++.+... +.. ..-+. .+...+...+. ..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir-~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVR-NQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHH-THH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHH-HHH
Confidence 45788888888887777654 23338999999999999999999865322 221 12222 22222222221 111
Q ss_pred HHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCch-hhhhc-CCceEEE
Q 038826 265 SQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVDYVYK 340 (572)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~ 340 (572)
..+..... ...+.+-++|+|+++.. ...+.|...+......+++|++|.... +.... .....+.
T Consensus 98 ~~~~~~~~------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 98 KDFASTRQ------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHHHHBCC------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHhhcc------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 11110000 01124678999998642 333334333322235667777765432 11111 1224788
Q ss_pred ecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhH
Q 038826 341 VEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (572)
Q Consensus 341 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 385 (572)
+.+++.++..+.+...+-.... .-..+....+++.++|.+--+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999988887765522111 112356778888899987643
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.85 E-value=3.1e-05 Score=82.14 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-----ceEEEEeecccccccccHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-----EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
...+|||+.+++.+...|.... ..-+.|+|.+|+|||+||+.+++.+...+ ...-++. +...
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~----l~~~------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDMG------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE----eeCC-------
Confidence 3569999999999999987542 34567999999999999999999763322 1111221 1100
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhh------h-c
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD------K-Y 333 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~------~-~ 333 (572)
....+ .........+...-..++.+|++| ...+....|...+. ....++|.+|....... . .
T Consensus 246 ----~~~~g---~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 ----TKYRG---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ----ccccc---hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 001222233333334567899999 22333333444443 12345665554443111 0 0
Q ss_pred CCceEEEecCCChhhHHHHHHhhh
Q 038826 334 GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
....++.+++++.++..+++...+
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 122468999999999999998654
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.82 E-value=0.00021 Score=72.19 Aligned_cols=259 Identities=12% Similarity=0.142 Sum_probs=131.2
Q ss_pred CCcccccccccccccccccc---CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVR---LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQI 263 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~i 263 (572)
..++|.+..++.+...+..+ ......++|+|++|+||||||+.+++.+...|.. .. ..+. .....+. .+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~s--g~~~--~~~~~l~-~~ 96 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---TS--GPVL--VKQGDMA-AI 96 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EE--TTTC--CSHHHHH-HH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee--chHh--cCHHHHH-HH
Confidence 46778777777666555432 2234678999999999999999999976443321 11 0000 0111110 01
Q ss_pred HHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCC--------C----------CCcEEE-E
Q 038826 264 VSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRF--------G----------HGSRVI-V 322 (572)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~gs~II-v 322 (572)
...+ .++-++++|++... ...+.+...+... + +...++ .
T Consensus 97 -------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 97 -------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp -------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred -------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 0111 13446677877432 1222221110000 0 011222 3
Q ss_pred EeCCchhhhhc--CCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCchhHHHHhhHh------cC
Q 038826 323 TTRDKKVLDKY--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF------YR 394 (572)
Q Consensus 323 TTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~ 394 (572)
|++...+.... ...-...+++.+.++-.+++.+.+-.... .-..+.+..|++.+.|.|-.+..+-..+ .+
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 44433332111 12335789999999999999877632221 2234668899999999997554333222 11
Q ss_pred C---CHHHHHHHHcCCcCCCcccHHHHHHHhhccCChhhHHHHhhhc-ccCCC-CCHHHHHHHHhhc-cchHHHHH-HHh
Q 038826 395 K---SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIA-CFFNG-EGRDYVKIILNNR-YLVHYGLN-ILA 467 (572)
Q Consensus 395 ~---~~~~w~~~l~~l~~~~~~~v~~~l~~Sy~~L~~~~k~~fl~la-~fp~~-~~~~~l~~~w~~~-~~~~~~l~-~L~ 467 (572)
. +.+.-..+++.+ ......|+...+..+..+. .|..+ ...+.+......+ ...+..++ .|.
T Consensus 235 ~~~It~~~v~~al~~~------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~ 302 (334)
T 1in4_A 235 ADRINTDIVLKTMEVL------------NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302 (334)
T ss_dssp CSSBCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHH
T ss_pred CCCcCHHHHHHHHHHh------------CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHH
Confidence 1 233333332221 1112245555555554433 23222 3555555554443 22333333 899
Q ss_pred hCCceEee-CCeEEecHHHHH
Q 038826 468 GKAIITIS-NNKLQMRDLLQE 487 (572)
Q Consensus 468 ~~sLi~~~-~~~~~mHdlv~~ 487 (572)
..+||+.. .|++-...-.+.
T Consensus 303 ~~g~i~~~~~gr~~~~~~~~~ 323 (334)
T 1in4_A 303 QAGFLARTPRGRIVTEKAYKH 323 (334)
T ss_dssp HTTSEEEETTEEEECHHHHHH
T ss_pred HcCCeecccccHHhhHHHHHH
Confidence 99999988 677654444333
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.80 E-value=1.3e-05 Score=78.40 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=84.0
Q ss_pred CCCCccccccccccccccccc----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc
Q 038826 185 NSEDLVGLDSHIQRNNSLLCV----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV 254 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~ 254 (572)
....++|.+..++.+.+.+.. +....+-+.|+|.+|+|||+||+.+++.....|-. +. ......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~-- 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE-- 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT--
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH--
Confidence 346799999888888776541 11113347899999999999999999875433211 11 000000
Q ss_pred cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh-----------------hhHHHhcCCCCCC--
Q 038826 255 ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG-----------------HSEYLTGGLSRFG-- 315 (572)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~~-- 315 (572)
...+... ......+......++.+|++|+++... .+..++..+....
T Consensus 83 -----------~~~~~~~---~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 -----------MFVGLGA---SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp -----------SCSSSCS---SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred -----------hhcchHH---HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 0011111 111122233334567899999995431 1233433333211
Q ss_pred -CCcEEEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 316 -HGSRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 316 -~gs~IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
....||.||...... ........+.++..+.++-.+++....
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 224566677655321 111233567788888888888887655
No 60
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=5e-05 Score=75.68 Aligned_cols=142 Identities=6% Similarity=-0.012 Sum_probs=85.4
Q ss_pred cccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc---ccccceEEEEeecccccc-cccHHHHHHHHHHHhhC
Q 038826 194 SHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI---SSQFEGWCFMANVREESK-RVELVHLRDQIVSQILG 269 (572)
Q Consensus 194 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~ 269 (572)
..++.+.+.+..+. .....++|++|+||||+|+.+++.. ...++....+. .+. ..++..+ +.+...+..
T Consensus 4 ~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~~~~~ 76 (305)
T 2gno_A 4 DQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKDFLNY 76 (305)
T ss_dssp CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHHHHTS
T ss_pred HHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHHHHhh
Confidence 33444555555443 5688999999999999999998742 22233345554 221 2333332 223333321
Q ss_pred CCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCCCCCCcEEEEEeCCc-hhhhhcCCceEEEecCCCh
Q 038826 270 ESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYGVDYVYKVEGFNY 346 (572)
Q Consensus 270 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIvTTR~~-~v~~~~~~~~~~~l~~L~~ 346 (572)
... .+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+. .+....... .+++++++.
T Consensus 77 ~p~--------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 77 SPE--------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp CCS--------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred ccc--------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 110 235678999999743 34555555444444677777776544 444433334 899999999
Q ss_pred hhHHHHHHhhh
Q 038826 347 RESLEIFCYYA 357 (572)
Q Consensus 347 ~ea~~Lf~~~a 357 (572)
++..+.+....
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887765
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0002 Score=73.34 Aligned_cols=171 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc-
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV- 254 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~- 254 (572)
.++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. ..+....+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVS-GAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEE-GGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEE-hHHhhcccc
Confidence 5677888887777665542 1123567899999999999999999997665442 222 11110000
Q ss_pred -cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCC--CC
Q 038826 255 -ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSR--FG 315 (572)
Q Consensus 255 -~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~~ 315 (572)
......+. .....-...+++|++|+++... .+..++..+.. ..
T Consensus 224 Gese~~vr~------------------lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 224 GEGSRMVRE------------------LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp THHHHHHHH------------------HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred chHHHHHHH------------------HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 01111111 1122224568999999997321 12233332221 22
Q ss_pred CCcEEEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCCC-CCCchHHHHHHHHHHhCCCch
Q 038826 316 HGSRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 316 ~gs~IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL 383 (572)
.+..||.||-..... .....+..+.++..+.++-.++|..+.-+-.. ...+ ...+++.+.|.-=
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 344566677544332 11235678999999999989999876532221 1112 3567777877643
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.79 E-value=2.3e-05 Score=76.46 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++|.+..+..+.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4588998888887766654222234678999999999999999998654
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=1.9e-05 Score=90.31 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...++||+.++..+.+.|.... .+-+.|+|.+|+|||+||+.+++.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3579999999999999887542 34578999999999999999999763
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.75 E-value=3.9e-05 Score=76.54 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=39.7
Q ss_pred CccccccccccccccccccC-------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 188 DLVGLDSHIQRNNSLLCVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++|.+..++.+...+.... .....+.|+|.+|+|||++|+.+++.....-...+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 56787777777766665421 11357999999999999999999997543322334443
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.73 E-value=3e-05 Score=70.86 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=53.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc-ceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF-EGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
...+.|+|.+|+||||||+.+++.+.... ..+.++. ..++...+........ .. .+.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~---~~----~~~~~~~- 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGK---DT----KFLKTVL- 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTC---CS----HHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCch---HH----HHHHHhc-
Confidence 46799999999999999999999764211 1234443 2233333333222111 11 1222222
Q ss_pred CceEEEEecCCC--hhh-----hHHHhcCCCCCCCCcEEEEEeCC
Q 038826 289 MNVCIILDKVDK--FGH-----SEYLTGGLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 289 kr~LlVLDdv~~--~~~-----~~~l~~~~~~~~~gs~IIvTTR~ 326 (572)
+.-+|||||++. .+. +..+.... ...|..+|+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~--~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYR--YNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHH--HHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHH--HHcCCCEEEEcCC
Confidence 456899999973 222 22222111 1246778888864
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.71 E-value=9.8e-05 Score=73.42 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.0
Q ss_pred Cccccccccccccccccc------------cCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 188 DLVGLDSHIQRNNSLLCV------------RLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 577777777776655543 011235688999999999999999998764
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.70 E-value=6.2e-06 Score=72.56 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=34.9
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 588999888888877754222234578999999999999999988644
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=8.3e-05 Score=77.30 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=96.4
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc-cc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK-RV 254 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~-~~ 254 (572)
.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. ..+... ..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs-~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVI-GSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEE-hHHhhcccC
Confidence 4688998888888765432 1234678999999999999999999997665432 222 111100 00
Q ss_pred -cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCCC--C
Q 038826 255 -ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSRF--G 315 (572)
Q Consensus 255 -~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 315 (572)
......+ ......-...+++|++|+++... .+..++..+... .
T Consensus 285 Gesek~ir------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 285 GEGARMVR------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp SHHHHHHH------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred CHHHHHHH------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 0111111 11222234578999999997321 112222222111 2
Q ss_pred CCcEEEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCc
Q 038826 316 HGSRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 316 ~gs~IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 382 (572)
.+..||.||-..... .....+..++++..+.++-.++|..+.-.-. ....+ ...|++.+.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 344556666544332 1123567888999899988999987653222 11112 356777787764
No 69
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=0.00013 Score=70.70 Aligned_cols=152 Identities=18% Similarity=0.102 Sum_probs=79.5
Q ss_pred CCCccccccccccccccccc---c-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCV---R-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
-.+++|.+..++++.+.+.. . ....+-+.|+|.+|+||||||+.+++.....| +.+. .......
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~-- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM-- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH--
Confidence 35678888777766554321 0 01234588999999999999999998654332 3332 1110000
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCCC--CCCC
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLSR--FGHG 317 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~g 317 (572)
..+. ........+.......+.++++|+++.. ..+..++..+.. ...+
T Consensus 85 -----------~~~~---~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 -----------FVGV---GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------CCCC---CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------hhhh---hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0000 0011112222233445789999998321 112222221111 1235
Q ss_pred cEEEEEeCCchhh-hhc----CCceEEEecCCChhhHHHHHHhhh
Q 038826 318 SRVIVTTRDKKVL-DKY----GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 318 s~IIvTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
..||.||...... ... .....+.++..+.++-.+++..+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 5667777654321 111 234577888888888888876654
No 70
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.66 E-value=7.3e-05 Score=74.53 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=37.8
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358899999888887776533334467899999999999999999854
No 71
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00024 Score=73.79 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5678888888887765542 123356799999999999999999999765543
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.64 E-value=0.0001 Score=83.14 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc------cceEEEEeecccccccccHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ------FEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~~~~~~s~~~~~~~l 259 (572)
...++||+.+++.+.+.|... ...-+.|+|.+|+|||++|+.+++.+... ....+|..+.....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-------- 254 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-------- 254 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh--------
Confidence 357999999999999988754 23457899999999999999999865321 12333332111100
Q ss_pred HHHHHHHhhCCCC-ccccchHHHHHHHh-hcCceEEEEecCCCh----------hh-hHHHhcCCCCCCCCcEEEEEeCC
Q 038826 260 RDQIVSQILGEST-VETSILPQCIKKRL-QQMNVCIILDKVDKF----------GH-SEYLTGGLSRFGHGSRVIVTTRD 326 (572)
Q Consensus 260 ~~~il~~l~~~~~-~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~-~~~l~~~~~~~~~gs~IIvTTR~ 326 (572)
.+... ...+.....+.+.+ ..++.+|++|+++.. .+ ...+...+. ..+.++|.+|..
T Consensus 255 --------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~ 324 (758)
T 1r6b_X 255 --------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_dssp --------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECH
T ss_pred --------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCc
Confidence 00000 00111111222222 335789999999744 12 222333333 234566666654
Q ss_pred chhhhhc-------CCceEEEecCCChhhHHHHHHhhh
Q 038826 327 KKVLDKY-------GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 327 ~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
....... .....+.+++++.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 3221100 112368899999999988887543
No 73
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00044 Score=71.92 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccc-
Q 038826 186 SEDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKR- 253 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~- 253 (572)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. ..+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhcccc
Confidence 35678888888877765542 1133678999999999999999999997655432 222 1111110
Q ss_pred cc-HHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCC--C
Q 038826 254 VE-LVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSR--F 314 (572)
Q Consensus 254 ~~-~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~ 314 (572)
.+ ..... .......-...+++|++|+++... .+..++..+.. .
T Consensus 256 ~Gese~~i------------------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 256 IGESARII------------------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp SSHHHHHH------------------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred chHHHHHH------------------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00 01111 111122224578999999997320 12233332221 1
Q ss_pred CCCcEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCc
Q 038826 315 GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 315 ~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 382 (572)
..+..||.||-....... ...+..+.++..+.++-.++|..+.-+-. ....+ ...+++.+.|+-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 234567777765433221 12456788888888888888876653322 11122 356677777764
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00014 Score=75.65 Aligned_cols=172 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred CCCCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc-
Q 038826 185 NSEDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK- 252 (572)
Q Consensus 185 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~- 252 (572)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. ..+...
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhhhhc
Confidence 335788888888877665432 1123678999999999999999999997655432 222 111111
Q ss_pred cc-cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh-------h---------hhHHHhcCCCCC-
Q 038826 253 RV-ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF-------G---------HSEYLTGGLSRF- 314 (572)
Q Consensus 253 ~~-~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------~---------~~~~l~~~~~~~- 314 (572)
.. ......+.+ ....-...+++|++|+++.. . .+..++..+..+
T Consensus 255 ~vGese~~ir~l------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 255 YIGEGAKLVRDA------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp CSSHHHHHHHHH------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ccchHHHHHHHH------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00 011111111 11222456899999999521 0 122333333322
Q ss_pred -CCCcEEEEEeCCchhhh-----hcCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCc
Q 038826 315 -GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 315 -~~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 382 (572)
..+..||.||....... ....+..+.++..+.++-.++|..+.-+-. ...-+ ...+++.+.|+-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 23445666776544322 112456788998898888888876653322 11112 356677777754
No 75
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=3e-05 Score=72.17 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=28.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.+.|+|.+|+|||+||+.+++........++|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67899999999999999999997655545566665
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.59 E-value=0.00015 Score=81.64 Aligned_cols=148 Identities=19% Similarity=0.131 Sum_probs=83.3
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc-----ceEEEEeecccccccccHHHHH
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF-----EGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
-..+|||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++.+.... ...-++. +. .
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~----~---- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LD----M---- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ec----c----
Confidence 3579999999999999987542 33478999999999999999999753211 1111221 10 0
Q ss_pred HHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhh------hc-
Q 038826 261 DQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD------KY- 333 (572)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~------~~- 333 (572)
.....+ +........+......++.+|++| ...+....+...+. ....++|.||....... ..
T Consensus 245 ---g~~~~G---~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ---GTKYRG---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ---cccccc---hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000 112233333444445678899999 22333333444443 23456666665443111 00
Q ss_pred CCceEEEecCCChhhHHHHHHhhh
Q 038826 334 GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.....+.++.++.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 012578999999999999998554
No 77
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.55 E-value=0.0005 Score=72.55 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=93.3
Q ss_pred CCccccccccccccccccc---c-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccH
Q 038826 187 EDLVGLDSHIQRNNSLLCV---R-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVEL 256 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~ 256 (572)
.+++|.+..++++.+.+.. . ..-.+-|.|+|++|+|||+||+.+++.....| +.+. ..+....+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~- 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV- 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh-
Confidence 4577777766666554321 0 11134588999999999999999998754332 2222 111111000
Q ss_pred HHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCCC--CCCCc
Q 038826 257 VHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLSR--FGHGS 318 (572)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gs 318 (572)
+ .........+.....+.+.+|+||+++.. ..+..++..+.. ...+.
T Consensus 91 ------------g---~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 91 ------------G---VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------T---HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------c---ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 00011122233444567899999999542 113333322211 12355
Q ss_pred EEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 319 RVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 319 ~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
.||.||........ ......+.++..+.++-.+++..++-...- .++. ....+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTC--CHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchh--hHHHHHHhcCCCc
Confidence 67777766543221 124457888888888888888766532221 1111 1345778888877
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.48 E-value=0.00045 Score=72.92 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=37.2
Q ss_pred CCCccccccccccccccc---cccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 186 SEDLVGLDSHIQRNNSLL---CVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...++|.+..++.+..++ ..+....+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 367999998877654443 22322345788999999999999999998654
No 79
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.42 E-value=0.00014 Score=64.38 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...++|+|..|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 358999999999999999999986543211256665
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.36 E-value=0.00068 Score=75.76 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=96.5
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
.++.|.++.+++|.+++.. +...++-|.++|++|+|||+||+++++.....| +.+. . +
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~---~---- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-G---P---- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-H---H----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-h---H----
Confidence 4578888888888776532 112367899999999999999999999876543 2333 1 0
Q ss_pred HHHHHHHHHHHhhCCCC-ccccchHHHHHHHhhcCceEEEEecCCChh-------------hhHHHhcCCCCC--CCCcE
Q 038826 256 LVHLRDQIVSQILGEST-VETSILPQCIKKRLQQMNVCIILDKVDKFG-------------HSEYLTGGLSRF--GHGSR 319 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gs~ 319 (572)
.++ .... +....+...+.......+.+|++|+++... ....|+..+... ..+..
T Consensus 273 ------~l~----sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ------EIM----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHH----SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------Hhh----cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 011 1110 001112222333345678999999996321 122233222111 12344
Q ss_pred EEEEeCCchhh-----hhcCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCch
Q 038826 320 VIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSL 383 (572)
Q Consensus 320 IIvTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL 383 (572)
||.||...... ........++++..+.++-.++|..+.-+.. ....+ ...+++.+.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 55565543322 1112557889999999998999887652221 11112 3567777777653
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.31 E-value=0.00012 Score=82.59 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCccccccccccccccccccC-------CCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHH
Q 038826 187 EDLVGLDSHIQRNNSLLCVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHL 259 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l 259 (572)
..++|.+..++.+...+.... .....+.++|.+|+|||+||+.+++.....-...+-++ ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468898888877776665321 11337999999999999999999997533323334443 21111111000
Q ss_pred HHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCCh--hhhHHHhcCCCC-----------CCCCcEEEEEeCC
Q 038826 260 RDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKF--GHSEYLTGGLSR-----------FGHGSRVIVTTRD 326 (572)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gs~IIvTTR~ 326 (572)
.......++ ....-+|+||+++.. +....|+..+.. ...+.+||+||..
T Consensus 568 ---------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ---------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 001111111 123458999999643 223333322111 1235688888873
Q ss_pred c-----------------hhhhhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 327 K-----------------KVLDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 327 ~-----------------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
. .+.. ..+.++.+.+|+.++-.+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1111 134588899999988888776543
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.30 E-value=0.00079 Score=76.10 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=85.7
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..++|.+..+++|.+++.. .......|.|+|.+|+||||||+.++......| +.+. ..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~------ 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPE------ 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chH------
Confidence 5689999999998887753 112345799999999999999999998765443 3333 100
Q ss_pred HHHHHHHHHHHhhCCCC-ccccchHHHHHHHhhcCceEEEEecCCCh----------------hhhHHHhcCCCCCCCCc
Q 038826 256 LVHLRDQIVSQILGEST-VETSILPQCIKKRLQQMNVCIILDKVDKF----------------GHSEYLTGGLSRFGHGS 318 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~gs 318 (572)
+..... .........+.......+.++++|+++.. ..+-.+...... ..+.
T Consensus 274 -----------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v 341 (806)
T 1ypw_A 274 -----------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHV 341 (806)
T ss_dssp -----------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCC
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccE
Confidence 001000 00111222233334456789999999421 011222222221 2344
Q ss_pred EEEEEeCCchhhh-hc----CCceEEEecCCChhhHHHHHHhhh
Q 038826 319 RVIVTTRDKKVLD-KY----GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 319 ~IIvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.+|.||....-.. .. .....+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5565665432211 11 234567788888898888888665
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.30 E-value=0.00066 Score=67.19 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=24.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.++.+.++|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678899999999999999999977443
No 84
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00039 Score=71.57 Aligned_cols=170 Identities=22% Similarity=0.188 Sum_probs=94.0
Q ss_pred CCccccccccccccccccc-----------cCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccc-cc
Q 038826 187 EDLVGLDSHIQRNNSLLCV-----------RLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESK-RV 254 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~-~~ 254 (572)
.++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. ..+... ..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhccC
Confidence 4677888888877665532 1123578999999999999999999997665432 122 111110 00
Q ss_pred -cHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceEEEEecCCChh----------------hhHHHhcCCCC--CC
Q 038826 255 -ELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVCIILDKVDKFG----------------HSEYLTGGLSR--FG 315 (572)
Q Consensus 255 -~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~~ 315 (572)
......+.+ ....-...+++|++|+++... .+..++..+.. ..
T Consensus 258 Gesek~ir~l------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 258 GDGPRLCRQI------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SHHHHHHHHH------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred chHHHHHHHH------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 111111111 112224568999999986220 12223322221 12
Q ss_pred CCcEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCC-CCCCchHHHHHHHHHHhCCCc
Q 038826 316 HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 316 ~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 382 (572)
.+..||.||-....... -..+..+.++..+.++-.++|..+.-.-. ....+ ...+++.+.|+-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 34556667755443321 12455778888888888888877653222 11112 356667777754
No 85
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.25 E-value=0.00042 Score=57.40 Aligned_cols=63 Identities=3% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CcccEEecCcccccccchHHHHHHHHhhCCCeEEEcCCCCCCCCccHHHHHHhhhcceEEEEeecCcccchhhHHHHHHH
Q 038826 11 RKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKTFIDEQLKKGDDIPSALLNAIEESKISVIIFSKGYASSTWCLHELVKI 90 (572)
Q Consensus 11 ~~~dvFis~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 90 (572)
.+|.+||||+.+|. ...|...|.+.|+... | ..|+.|.++|++.++...+|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 57999999999983 4455555545566432 2 678999999999999999999999998766
Q ss_pred HH
Q 038826 91 LE 92 (572)
Q Consensus 91 ~~ 92 (572)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.11 E-value=0.0037 Score=61.06 Aligned_cols=124 Identities=16% Similarity=0.083 Sum_probs=68.5
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHH-hhcCce
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKR-LQQMNV 291 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~-L~~kr~ 291 (572)
++|+|++|+||||||+.++..... ..+.+.. .+..... ..... .....+.+. -...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g-~~l~~~~-~~~~~----------------~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKG-PELLNMY-VGESE----------------RAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEET-TTTCSST-THHHH----------------HHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc-HHHHhhh-hhHHH----------------HHHHHHHHHHHhcCCC
Confidence 899999999999999999986543 2344431 1111100 00100 011111121 134578
Q ss_pred EEEEecCCChh-------------hhHHHhcCCCC--CCCCcEEEEEeCCchhhhhc-----CCceEEEecCCChhhHHH
Q 038826 292 CIILDKVDKFG-------------HSEYLTGGLSR--FGHGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLE 351 (572)
Q Consensus 292 LlVLDdv~~~~-------------~~~~l~~~~~~--~~~gs~IIvTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~ 351 (572)
++++|+++... ....+...+.. .....-++.+|....+.... ..+..+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999996421 11222222211 11234556677666554321 356778899999998888
Q ss_pred HHHhhh
Q 038826 352 IFCYYA 357 (572)
Q Consensus 352 Lf~~~a 357 (572)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887664
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.95 E-value=0.0067 Score=58.25 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=65.1
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCce
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNV 291 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~ 291 (572)
+.|+|.+|+||||||+.++..... ..+.+. .. .+. ... ..........+.+.. ...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~----~~------~~~----~~~----~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV---PFITAS----GS------DFV----EMF----VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEE----HH------HHH----HSC----TTHHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEee----HH------HHH----HHH----hhHHHHHHHHHHHHHHhcCCe
Confidence 889999999999999999987652 223333 10 000 000 000000111122222 23468
Q ss_pred EEEEecCCChh----------------hhHHHhcCCCCC--CCCcEEEEEeCCchhhhh-----cCCceEEEecCCChhh
Q 038826 292 CIILDKVDKFG----------------HSEYLTGGLSRF--GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRE 348 (572)
Q Consensus 292 LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~e 348 (572)
++++|+++... .+..+...+... .....++.||........ ......+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999994210 122332222111 123345556665544321 1245678888888888
Q ss_pred HHHHHHhhh
Q 038826 349 SLEIFCYYA 357 (572)
Q Consensus 349 a~~Lf~~~a 357 (572)
-.+++..++
T Consensus 191 r~~il~~~~ 199 (254)
T 1ixz_A 191 REQILRIHA 199 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.0034 Score=61.34 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=73.9
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCceE
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMNVC 292 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr~L 292 (572)
+.|+|.+|+||||||+.++..... ..+.+. .. .+. .... ...........+..-...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~----~~------~~~----~~~~---~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV---PFITAS----GS------DFV----EMFV---GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEE----HH------HHH----HSTT---THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCC---CEEEec----HH------HHH----HHHh---hHHHHHHHHHHHHHHhcCCcE
Confidence 889999999999999999987652 233333 10 010 0000 000000111112222235689
Q ss_pred EEEecCCCh----------------hhhHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCCceEEEecCCChhhH
Q 038826 293 IILDKVDKF----------------GHSEYLTGGLSRF--GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRES 349 (572)
Q Consensus 293 lVLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IIvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea 349 (572)
+++||++.. ..+..+...+... .....++.||....... .......+.++..+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 999999421 1122333222211 12234455666554432 112456788988888888
Q ss_pred HHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 350 LEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 350 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
.+++..++-+... .++. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~-~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPL-AEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCB-CTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCC-Cccc--CHHHHHHHcCCCC
Confidence 8888765522111 1111 1335666666654
No 89
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.89 E-value=0.0025 Score=67.53 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=88.3
Q ss_pred CCCccccccccccccccccc---c-------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 186 SEDLVGLDSHIQRNNSLLCV---R-------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..+++|.+..++++.+.... . ..-.+-|.|+|.+|+||||||+.++...... .+.+. ..+....+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~- 104 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF- 104 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh-
Confidence 35677777665555443221 0 0112348999999999999999999876422 23333 11111000
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHhh----cCceEEEEecCCCh----------------hhhHHHhcCCCCC-
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRLQ----QMNVCIILDKVDKF----------------GHSEYLTGGLSRF- 314 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~- 314 (572)
.......++..+. ..+.++++|+++.. ..+..++..+..+
T Consensus 105 -------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 105 -------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp -------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred -------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0011112222222 23579999999522 1123333322211
Q ss_pred -CCCcEEEEEeCCchhhhh-----cCCceEEEecCCChhhHHHHHHhhhhcCCCCCCchHHHHHHHHHHhCCCc
Q 038826 315 -GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (572)
Q Consensus 315 -~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 382 (572)
..+..++.||........ ......+.++..+.++-.+++..++-+..- .++. ....++..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSS--TTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHH--HHHHHHHhcCCCC
Confidence 223455566666554321 124567889999988888888776522111 1111 1345666677765
No 90
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.0024 Score=68.80 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
...+.|+|.+|+||||||+.++......|
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 45899999999999999999998764443
No 91
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.81 E-value=0.0023 Score=58.73 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=58.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhh--CC-----CCc----c--ccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQIL--GE-----STV----E--TSI 277 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~--~~-----~~~----~--~~~ 277 (572)
..|.|++-.|.||||+|...+-+...+=-.+.++.-... ....+...++..+.-.+. +. ..+ . ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456677777799999999888875544334455531111 122333344433310000 00 000 0 122
Q ss_pred hHHHHHHHhhcC-ceEEEEecCC--------ChhhhHHHhcCCCCCCCCcEEEEEeCCc
Q 038826 278 LPQCIKKRLQQM-NVCIILDKVD--------KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (572)
Q Consensus 278 ~~~~l~~~L~~k-r~LlVLDdv~--------~~~~~~~l~~~~~~~~~gs~IIvTTR~~ 327 (572)
.....++.+... -=|||||++. +.+++-.++...+ ....||+|+|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp---~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP---GHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC---TTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc---CCCEEEEECCCC
Confidence 334445555444 4599999983 2233333333322 467899999986
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.79 E-value=0.00038 Score=69.00 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=42.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQM 289 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~k 289 (572)
.+++.|+|++|+|||+||.+++.. .-..+.|+... ..+..+. . . . ..+.....+.+.+...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~--~eE~v~~----------~-~--~-~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVR--FGEPLSG----------Y-N--T-DFNVFVDDIARAMLQH 183 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE--BSCSSTT----------C-B--C-CHHHHHHHHHHHHHHC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec--chhhhhh----------h-h--c-CHHHHHHHHHHHHhhC
Confidence 457789999999999999999886 22234566520 0111000 0 0 0 0223344455566666
Q ss_pred ceEEEEecCCC
Q 038826 290 NVCIILDKVDK 300 (572)
Q Consensus 290 r~LlVLDdv~~ 300 (572)
+ +||+|++..
T Consensus 184 ~-LLVIDsI~a 193 (331)
T 2vhj_A 184 R-VIVIDSLKN 193 (331)
T ss_dssp S-EEEEECCTT
T ss_pred C-EEEEecccc
Confidence 6 999999964
No 93
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.75 E-value=0.0015 Score=73.49 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCccccccccccccccccccC-------CCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRL-------PDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458888888877766654311 123478999999999999999999876
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.63 E-value=0.0029 Score=59.12 Aligned_cols=33 Identities=9% Similarity=-0.081 Sum_probs=26.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.++.|+|.+|+||||||..++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 46899999999999999999987 2234567776
No 95
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.61 E-value=0.0079 Score=60.83 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=54.3
Q ss_pred cccccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-
Q 038826 197 QRNNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE- 274 (572)
Q Consensus 197 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~- 274 (572)
..|...|. .+-..-.++.|+|.+|+||||||.+++......-..++|+. .....+.. .+..++....+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId----~E~s~~~~-----ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID----AEHALDPV-----YAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cccccchH-----HHHHcCCchhhhh
Confidence 34444444 22223579999999999999999999886544334567886 33333332 233333322211
Q ss_pred ------ccchHHHHHHHhh-cCceEEEEecCCC
Q 038826 275 ------TSILPQCIKKRLQ-QMNVCIILDKVDK 300 (572)
Q Consensus 275 ------~~~~~~~l~~~L~-~kr~LlVLDdv~~ 300 (572)
.++....+...++ .+.-++|+|.+..
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 2233333443333 4566899998843
No 96
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.44 E-value=0.0022 Score=73.12 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=36.7
Q ss_pred Ccccccccccccccccccc-------CCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 188 DLVGLDSHIQRNNSLLCVR-------LPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|.+..++.+...+... ......+.|+|.+|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789888888776666432 11235789999999999999999998653
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.39 E-value=0.0064 Score=60.45 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc-cccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS-SQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (572)
.+.+.|+|.+|+|||+||..+++... ..-..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45788999999999999999999765 4433455665
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.38 E-value=0.0044 Score=58.33 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=27.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.+++|+|.+|+|||||++.++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999875433323455654
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.0012 Score=62.21 Aligned_cols=109 Identities=14% Similarity=-0.077 Sum_probs=57.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc----ccchHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE----TSILPQCIKKR 285 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~----~~~~~~~l~~~ 285 (572)
-.++.|+|..|+||||++..++++...+-..++.+.... ... + ..++++.++...... ..++.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~r-~----~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DTR-S----IRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CGG-G----CSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cch-H----HHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 468899999999999999999987765544444443110 000 1 112233332221111 11222233322
Q ss_pred hhcC-ceEEEEecCCC--hhhhHHHhcCCCCCCCCcEEEEEeCCch
Q 038826 286 LQQM-NVCIILDKVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (572)
Q Consensus 286 L~~k-r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIvTTR~~~ 328 (572)
+.+. .-+||+|.+.. .++++.+....+ .|..||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 2223 45999999853 234443322111 2678999998543
No 100
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.26 E-value=0.013 Score=59.37 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=29.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3568999999999999999999875543334577887
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.23 E-value=0.0022 Score=57.86 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|.|+|++|+||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 102
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.11 E-value=0.01 Score=58.63 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=48.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhccccc--ceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-------ccch-HHH
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQF--EGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-------TSIL-PQC 281 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~-~~~ 281 (572)
++.|.|.+|+||||||.+++......+ ..++|++ ....++.. .+..++...++. .++. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId----~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD----SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE----SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe----ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 789999999999999999887654442 4678887 33344432 244554433322 1222 222
Q ss_pred HHHH--h-hcCceEEEEecCCC
Q 038826 282 IKKR--L-QQMNVCIILDKVDK 300 (572)
Q Consensus 282 l~~~--L-~~kr~LlVLDdv~~ 300 (572)
+... + .++.-|||+|-+..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHHhhccCceEEEEecccc
Confidence 2221 2 34678999998854
No 103
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.08 E-value=0.0022 Score=71.65 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeeccccccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVE 255 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~ 255 (572)
..+.|.++..++|.+.+... ....+-|.++|++|.|||.||+++++.....| +. ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ec----
Confidence 45667777766666554321 12245688999999999999999999765432 22 11
Q ss_pred HHHHHHHHHHHhhCCCCccccchHHHHHHHh-hcCceEEEEecCCChh----------------hhHHHhcCCCCCC--C
Q 038826 256 LVHLRDQIVSQILGESTVETSILPQCIKKRL-QQMNVCIILDKVDKFG----------------HSEYLTGGLSRFG--H 316 (572)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 316 (572)
.. .++....+. .+.....+.+.. +..+++|++|+++... .+..|+..+.... .
T Consensus 544 ~~----~l~s~~vGe----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 544 GP----ELLTMWFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HH----HHHTTTCSS----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred cc----hhhccccch----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 11 122111111 122223333322 4578999999996310 1333433322221 2
Q ss_pred CcEEEEEeCCchh-----hhhcCCceEEEecCCChhhHHHHHHhhh
Q 038826 317 GSRVIVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 317 gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
+.-||-||-.... ......+..+.++..+.++-.++|..+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3333334433322 1111356678888777777777777654
No 104
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.05 E-value=0.02 Score=58.19 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=48.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-------ccchHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-------TSILPQC 281 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~~~~ 281 (572)
.-.++.|+|.+|+||||||.+++......-..++|++ .....+.. .+..++....+. .++....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~----~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID----AEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE----CCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 3468999999999999999998876543334678887 33333332 123333221111 2233334
Q ss_pred HHHHhh-cCceEEEEecCC
Q 038826 282 IKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 282 l~~~L~-~kr~LlVLDdv~ 299 (572)
+....+ +..-+||+|.+.
T Consensus 144 l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHTTTCCSEEEEECTT
T ss_pred HHHHHhcCCCCEEEEeChH
Confidence 444333 345699999984
No 105
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.96 E-value=0.0034 Score=56.11 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|.|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.94 E-value=0.094 Score=52.60 Aligned_cols=154 Identities=10% Similarity=-0.064 Sum_probs=93.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc-cccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS-SQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
.++..++|..|.||++.|..+.+.+. ..|+....+. .....++.++...+-. .-+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~------------------~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQA------------------MSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHH------------------HHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcC------------------cCCcc
Confidence 56899999999999999999988653 3343221111 1122344443332211 11234
Q ss_pred CceEEEEecCCC---hhhhHHHhcCCCCCCCCcEEEEEeCC-------chhhhhc-CCceEEEecCCChhhHHHHHHhhh
Q 038826 289 MNVCIILDKVDK---FGHSEYLTGGLSRFGHGSRVIVTTRD-------KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYA 357 (572)
Q Consensus 289 kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IIvTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 357 (572)
.+-++|+|+++. .+..+.|...+....+++.+|++|-. ..+.... .....++..+++.++-.+.+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 567889999865 34555565555444467777776643 2333332 233678999999999888877765
Q ss_pred hcCCCCCCchHHHHHHHHHHhCCCchhHHH
Q 038826 358 FRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (572)
Q Consensus 358 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 387 (572)
-..+. .-..+.+..+++.++|.+..+..
T Consensus 156 ~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 33221 12245677888888988877654
No 107
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.89 E-value=0.01 Score=60.06 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=29.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-+++.|.|.+|+||||||.+++......-..++|++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3568999999999999999998876544334678887
No 108
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.89 E-value=0.0021 Score=64.50 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=38.8
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
..++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.....|
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 46899999888887777653 3588999999999999999999765443
No 109
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.81 E-value=0.0042 Score=56.41 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+.|.|+|++|+||||+|+.++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998753
No 110
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.81 E-value=0.024 Score=50.46 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=72.1
Q ss_pred cccEEecC--------------cccccccchHHHHHHHHhhCCCeEEEcC-CCC-------C-CCCccHHHHHHhhhcce
Q 038826 12 KYDVFLSF--------------RGEDTRNNFTSHLFAAFCREKIKTFIDE-QLK-------K-GDDIPSALLNAIEESKI 68 (572)
Q Consensus 12 ~~dvFis~--------------~~~D~~~~f~~~l~~~L~~~g~~~~~d~-~~~-------~-g~~~~~~i~~~i~~s~~ 68 (572)
+--+|+.| ...| -...+.|...-....+..|.|. |.. . ...|-+.+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34577888 3445 4457777776666666777776 552 2 34577888999999999
Q ss_pred EEEEeecCcccchhhHHHHHHHHHhhhccCceeeeeeeecC-CCcccCCCCchHHHHH
Q 038826 69 SVIIFSKGYASSTWCLHELVKILECKKRKGQIVMPVFYNVD-PSDVRNQTGSFGDAFV 125 (572)
Q Consensus 69 ~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~v~Pify~v~-p~~vr~q~~~~~~~~~ 125 (572)
+|+++|++...|.|-.+|+..++. ..+.+||-|.-+-+ .+++.+-.|+|.....
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~ 137 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIK 137 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHH
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHh
Confidence 999999999999999999888762 23345555543311 2244443444443333
No 111
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.77 E-value=0.015 Score=58.61 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=33.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc------ccceEEEEeecccccccccHHHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS------QFEGWCFMANVREESKRVELVHLR 260 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~~~~~~s~~~~~~~l~ 260 (572)
.-.++.|+|.+|+||||||..++..... .-..++|+. ....++...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~----~E~~~~~~~l~ 174 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID----TENTFRPDRLR 174 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE----SSSCCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE----CCCCCCHHHHH
Confidence 4578999999999999999998875322 224678887 33444454443
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.75 E-value=0.0045 Score=57.17 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|.|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.74 E-value=0.0025 Score=64.71 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=65.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc-eEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE-GWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 288 (572)
..+++|+|..|+|||||.+.+...+..... .++.+.+..+....... ..+.+... ..........+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~v~q~~~--~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CLVNQREV--HRDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SEEEEEEB--TTTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cceeeeee--ccccCCHHHHHHHHhhh
Confidence 358999999999999999998886544322 23333311110000000 00000000 00022345578888889
Q ss_pred CceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhhh
Q 038826 289 MNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD 331 (572)
Q Consensus 289 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~~ 331 (572)
.+=+|++|.+.+.+.++.+..... .|..||+||-....+.
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 999999999988777665443322 3667888988766553
No 114
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.73 E-value=0.0046 Score=55.21 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 43
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.72 E-value=0.012 Score=58.81 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=49.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc------cceEEEEeecccccccccHHHHHHHHHHHhhCCCCc----c-----
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ------FEGWCFMANVREESKRVELVHLRDQIVSQILGESTV----E----- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~----~----- 274 (572)
-.++.|+|.+|+||||||.+++...... -..++|+. ....++..++... +..++....+ .
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~----~e~~~~~~~l~~~-~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID----TEGTFRWERIENM-AKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE----SSSCCCHHHHHHH-HHHTTCCHHHHHHTEEEEEC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE----CCCCCCHHHHHHH-HHHhCCCHHHHhccEEEEeC
Confidence 4689999999999999999988754221 24678887 3333445544432 3333221100 0
Q ss_pred --cc---chHHHHHHHhh--cCceEEEEecCC
Q 038826 275 --TS---ILPQCIKKRLQ--QMNVCIILDKVD 299 (572)
Q Consensus 275 --~~---~~~~~l~~~L~--~kr~LlVLDdv~ 299 (572)
.+ +....+...+. .+.-+||+|.+.
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 11 12334444443 456788999884
No 116
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.63 E-value=0.059 Score=51.20 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||.+.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998744
No 117
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.57 E-value=0.0062 Score=54.84 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.5
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 118
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.55 E-value=0.059 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+++|+|..|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 119
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.54 E-value=0.0093 Score=54.26 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=22.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.+|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 120
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.53 E-value=0.0025 Score=61.83 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=62.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccc-cHHHHHHHHHHHhhCCCCcc-ccchHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRV-ELVHLRDQIVSQILGESTVE-TSILPQCIKKRLQ 287 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~-~~~~l~~~il~~l~~~~~~~-~~~~~~~l~~~L~ 287 (572)
-.+++|+|..|+|||||.+.+...+...+.+.+++.... +...+ .... + +....-.. .......+.+.|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~---v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----I---VNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----E---EEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----e---eeHHHhCCCHHHHHHHHHHHHh
Confidence 468999999999999999998876544334444443110 00000 0000 0 00000000 1234556677777
Q ss_pred cCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchhh
Q 038826 288 QMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL 330 (572)
Q Consensus 288 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v~ 330 (572)
..+=+|++|...+.+....+.... ..|.-|++||-+....
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 788899999997666554443322 2466788888776543
No 121
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.49 E-value=0.0056 Score=54.86 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|+|+|++|+|||||++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988654
No 122
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.46 E-value=0.0068 Score=54.11 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988654
No 123
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.44 E-value=0.0045 Score=63.08 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=22.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.++|.+|+|||++|+.+++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35688999999999999999999764
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.42 E-value=0.0083 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..+++|+|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999886
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.42 E-value=0.0088 Score=54.54 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.41 E-value=0.0058 Score=55.28 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+.|.|+|++|+||||+|+.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998765
No 127
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.35 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|+|++|+||||||+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998764
No 128
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.35 E-value=0.024 Score=56.48 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=37.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
.-.++.|.|.+|+||||||..++.....+-..++|+. -..+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 3468999999999999999998875433335677775 2245666666665543
No 129
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.34 E-value=0.0069 Score=56.05 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|.|..|+|||||++.+...+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999987543
No 130
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.34 E-value=0.021 Score=57.02 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=22.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.-.++.|+|.+|+||||||.+++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998864
No 131
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.31 E-value=0.013 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..+|.|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987643
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.0064 Score=56.57 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|+|..|+|||||++.+...+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 133
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.27 E-value=0.0068 Score=54.56 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998653
No 134
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.22 E-value=0.008 Score=54.33 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=18.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988654
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.21 E-value=0.0073 Score=55.78 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 136
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.20 E-value=0.01 Score=54.17 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 137
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.0084 Score=54.36 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=22.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.012 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|+|+.|+|||||++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.18 E-value=0.012 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|+|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 140
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.16 E-value=0.0092 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998754
No 141
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.16 E-value=0.0076 Score=55.07 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=24.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFE 239 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (572)
|.|.|+|++|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887655554
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.16 E-value=0.0089 Score=54.33 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998664
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.16 E-value=0.0074 Score=54.74 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|+|+|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988653
No 144
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.14 E-value=0.01 Score=57.20 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988643
No 145
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.14 E-value=0.13 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|.|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 146
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.09 E-value=0.0072 Score=64.12 Aligned_cols=45 Identities=18% Similarity=0.022 Sum_probs=37.1
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++|.+..++.+...+..+ .-|.|+|.+|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 36899998888777666544 3688999999999999999999764
No 147
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.04 E-value=0.03 Score=55.86 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=28.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..++|+|+|.+|+||||++..++..+...-..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999886654333344443
No 148
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.04 E-value=0.026 Score=54.28 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 149
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.03 E-value=0.0089 Score=53.47 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=21.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|.|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988653
No 150
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.01 E-value=0.013 Score=53.78 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...+|+|+|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999885
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.00 E-value=0.012 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=21.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|++|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999886
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.99 E-value=0.012 Score=53.92 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|.|++|+||||+|+.++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 153
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.99 E-value=0.014 Score=53.81 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=23.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998864
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.97 E-value=0.012 Score=53.54 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 155
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.96 E-value=0.018 Score=53.23 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+|.|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999876543
No 156
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.96 E-value=0.016 Score=53.69 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=22.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|+|.+|+||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998754
No 157
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.93 E-value=0.036 Score=51.42 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+|.|.|++|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999998864
No 158
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.93 E-value=0.013 Score=56.32 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=23.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|.|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988654
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.89 E-value=0.013 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..|+|.|++|+||||+|+.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 160
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.86 E-value=0.018 Score=53.43 Aligned_cols=28 Identities=4% Similarity=0.049 Sum_probs=24.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..+|+|.|+.|+||||+|+.+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999876543
No 161
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.86 E-value=0.02 Score=56.48 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=27.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..+++++|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999999886544333445554
No 162
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.84 E-value=0.013 Score=53.98 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.83 E-value=0.015 Score=53.96 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..+|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987643
No 164
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.83 E-value=0.013 Score=52.00 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=21.4
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 165
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.83 E-value=0.015 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998864
No 166
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.81 E-value=0.012 Score=54.48 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|.|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988764
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.76 E-value=0.019 Score=51.38 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=26.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceE
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGW 241 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~ 241 (572)
.++++|.|..|+|||||+..+...+..+ +...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 5789999999999999999999876544 4433
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.75 E-value=0.013 Score=53.36 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=23.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
++++|+|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998665444
No 169
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.74 E-value=0.015 Score=52.96 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+++|+|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.73 E-value=0.015 Score=54.44 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=22.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988653
No 171
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.72 E-value=0.067 Score=55.62 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..++|.++|.+|+||||+|..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999998866544
No 172
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.72 E-value=0.012 Score=57.93 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=24.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+|+|+|..|+||||||+.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4679999999999999999998886543
No 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.68 E-value=0.016 Score=55.95 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|.|.|++|+||||+|+.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998864
No 174
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.66 E-value=0.016 Score=53.42 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...|.|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 175
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.64 E-value=0.0067 Score=61.14 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=33.2
Q ss_pred CCCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 186 SEDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 186 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...++|.+..++.+...+... ...-|.|+|.+|+|||+||+.+++...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 356899887555433222211 122488999999999999999998654
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.61 E-value=0.016 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.60 E-value=0.018 Score=53.36 Aligned_cols=27 Identities=4% Similarity=0.019 Sum_probs=23.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..+|+|.|+.|+||||+|+.+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999986543
No 178
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.59 E-value=0.016 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 179
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.58 E-value=0.018 Score=54.19 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998865
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.58 E-value=0.018 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 181
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.55 E-value=0.016 Score=54.30 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+|+|+|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 182
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.55 E-value=0.02 Score=53.15 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|+|..|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988544
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.016 Score=54.94 Aligned_cols=36 Identities=17% Similarity=-0.038 Sum_probs=27.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999988775433334567776
No 184
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.53 E-value=0.01 Score=60.62 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..+.++|.+|+|||++|+.+++....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999997643
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.52 E-value=0.016 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=21.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.52 E-value=0.04 Score=50.22 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998753
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.50 E-value=0.032 Score=52.75 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=28.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc--c----ccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS--S----QFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~wv~ 245 (572)
-.++.|+|.+|+|||||+..++.... . .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 46899999999999999999987422 1 134678887
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.50 E-value=0.028 Score=53.33 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=30.6
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhh-cccccceEEEEe
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ-ISSQFEGWCFMA 245 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~wv~ 245 (572)
|.++|..+-..-.++.|.|.+|+|||+||.+++.. ....-..++++.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34444332223468999999999999999987654 333334555665
No 189
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.49 E-value=0.018 Score=52.92 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=22.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999886
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.47 E-value=0.063 Score=54.69 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=61.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEE-EEeecccccccccHHHHHHHHHHH--hhCCCCccccchHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWC-FMANVREESKRVELVHLRDQIVSQ--ILGESTVETSILPQCIKKRL 286 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-wv~~~~~~s~~~~~~~l~~~il~~--l~~~~~~~~~~~~~~l~~~L 286 (572)
..+++|+|..|+|||||.+.+...+.....+.+ ++.+.-+....... .++.+ ++. . .......++..|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-----~~v~Q~~~g~-~---~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-----SIVNQREVGE-D---TKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-----SEEEEEEBTT-T---BSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-----eEEEeeecCC-C---HHHHHHHHHHHh
Confidence 468999999999999999999886544323333 33311000000000 00000 000 0 123456677778
Q ss_pred hcCceEEEEecCCChhhhHHHhcCCCCCCCCcEEEEEeCCchh
Q 038826 287 QQMNVCIILDKVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (572)
Q Consensus 287 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIvTTR~~~v 329 (572)
...+=+|++|.+.+.+.+...+... ..|..||.|+-...+
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 7788899999998776655443322 246667777776543
No 191
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.44 E-value=0.02 Score=53.05 Aligned_cols=24 Identities=8% Similarity=0.208 Sum_probs=21.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|.|..|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 192
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.44 E-value=0.018 Score=54.04 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=22.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988654
No 193
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.016 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred ceEEEEeecCcchHhHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~ 231 (572)
..+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999754
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.021 Score=53.50 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=23.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++|.|.|++|+||||.|+.+++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998864
No 195
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.42 E-value=0.018 Score=58.28 Aligned_cols=27 Identities=19% Similarity=-0.077 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-+.++|+|.+|+|||||++.+++.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 458999999999999999999886543
No 196
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.40 E-value=0.01 Score=56.78 Aligned_cols=26 Identities=8% Similarity=-0.178 Sum_probs=22.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.36 E-value=0.028 Score=51.62 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=22.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..|+|.|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.31 E-value=0.038 Score=55.39 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=38.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILG 269 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~ 269 (572)
-.++.|.|.+|+||||||..++.....+=..++|++ -..+..++...++....+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDLTS 99 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHhhC
Confidence 458999999999999999999886544334556665 345666777777665443
No 199
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.29 E-value=0.025 Score=55.46 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|.|.|++|+||||+|+.+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 200
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.28 E-value=0.052 Score=55.82 Aligned_cols=37 Identities=5% Similarity=0.014 Sum_probs=27.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh--ccc----ccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ--ISS----QFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~--~~~----~f~~~~wv~ 245 (572)
.-.++.|+|.+|+|||||+..++-. ... .-..++|+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3469999999999999999977632 211 224578887
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.28 E-value=0.02 Score=54.63 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|+|+.|+|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.26 E-value=0.024 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|+|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 203
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.23 E-value=0.021 Score=53.16 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 204
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.23 E-value=0.022 Score=54.65 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|+|+.|+||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999997654
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.21 E-value=0.0082 Score=60.35 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
....|.|+|++|+||||+++.++..+...|
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345688999999999999999998765444
No 206
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.20 E-value=0.022 Score=52.98 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.17 E-value=0.018 Score=55.21 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998654
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.13 E-value=0.028 Score=52.63 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=27.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc------ccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS------QFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~ 245 (572)
-.+++|+|.+|+|||||++.++..... .-...+|+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 469999999999999999999873322 123467776
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.09 E-value=0.077 Score=54.97 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=24.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..++|.++|.+|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999988765443
No 210
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.07 E-value=0.024 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|.|+|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988754
No 211
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.06 E-value=0.024 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++|+|..|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 212
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.05 E-value=0.034 Score=55.29 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=27.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.++|+|+|=|||||||.|.-++.-+...=..+.-++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5799999999999999999887775444323344443
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.00 E-value=0.029 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..+|+|+|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998865
No 214
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.95 E-value=0.068 Score=55.70 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=23.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
+.++|+|.+|+|||||+..+......++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 4688999999999999999988655444
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.93 E-value=0.026 Score=53.59 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=25.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc-cccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS-SQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (572)
-.+++|+|..|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46899999999999999999884221 2223445554
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.91 E-value=0.087 Score=55.05 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=42.2
Q ss_pred cccccccccccCCCceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHHHhh
Q 038826 196 IQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVSQIL 268 (572)
Q Consensus 196 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~ 268 (572)
...|..++ .+-..-.++.|.|.+|+||||||..++...... -..++|+. -..+..++...++....
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHc
Confidence 33344444 232334689999999999999999998865432 23566765 23455667766665443
No 217
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.89 E-value=0.028 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhcc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.88 E-value=0.031 Score=54.62 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999983
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.87 E-value=0.078 Score=64.59 Aligned_cols=82 Identities=9% Similarity=0.043 Sum_probs=52.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-------ccchHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-------TSILPQC 281 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~~~~ 281 (572)
..+.|.|+|++|+|||+||.+++.....+=..++|+. .....+... +..++.+-.+. .++..+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 4678999999999999999999886554444577887 444444444 23333211111 2234444
Q ss_pred HHHHhh-cCceEEEEecCC
Q 038826 282 IKKRLQ-QMNVCIILDKVD 299 (572)
Q Consensus 282 l~~~L~-~kr~LlVLDdv~ 299 (572)
++...+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 444443 467899999994
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.85 E-value=0.033 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.84 E-value=0.024 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999988754
No 222
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.82 E-value=0.13 Score=51.44 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
..++|+|..|+|||||++.+...+.. ..+.+.+.+..+..... . +..+.-+.+ ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~----~~~i~~~~g----gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-H----KNYTQLFFG----GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-C----SSEEEEECB----TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-c----hhEEEEEeC----CChhHHHHHHHHhhhCC
Confidence 47999999999999999999886544 34566666432211000 0 000000000 01234456677788888
Q ss_pred eEEEEecCCChhhhHHHhcCCCCCCCCc-EEEEEeCCch
Q 038826 291 VCIILDKVDKFGHSEYLTGGLSRFGHGS-RVIVTTRDKK 328 (572)
Q Consensus 291 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs-~IIvTTR~~~ 328 (572)
=+|+||.+.+.+.++.+. .+. .|. -+|+||....
T Consensus 242 ~ilildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECSS
T ss_pred CEEEEcCCChHHHHHHHH-HHh---cCCCEEEEEEcccH
Confidence 899999998755444333 222 222 2666665443
No 223
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.81 E-value=0.03 Score=55.89 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=23.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998754
No 224
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.78 E-value=0.027 Score=52.62 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998875
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.76 E-value=0.031 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.067 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988654
No 226
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.73 E-value=0.035 Score=52.93 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=22.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|.|..|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999988754
No 227
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.72 E-value=0.14 Score=53.19 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=35.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccc-cccHHHHHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESK-RVELVHLRDQIVSQ 266 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~-~~~~~~l~~~il~~ 266 (572)
-+.++|.|.+|+|||+|+..+++.+... -+.++++- +.+ .....++.+.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~----iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG----VGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE----ESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE----CCCcchHHHHHHHHhhhc
Confidence 4579999999999999999999875433 34455543 333 33555666666543
No 228
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.71 E-value=0.02 Score=57.08 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=23.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|.|..|+||||||+.+...+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999877544
No 229
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.71 E-value=0.046 Score=54.06 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+++|+|.+|+|||||+..++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999875543
No 230
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.69 E-value=0.03 Score=51.67 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
.+.+.|+|++|+||||+|..+++.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999987643
No 231
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.66 E-value=0.035 Score=55.16 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=23.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|.|..|+|||||++.+...+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 457999999999999999999887543
No 232
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.64 E-value=0.15 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.032 Sum_probs=23.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-+.++|+|.+|+|||+|+..+++.+..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhh
Confidence 457899999999999999999986543
No 233
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.58 E-value=0.047 Score=53.97 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=27.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...+|+|+|.+|+||||++..++..+...-..+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3579999999999999999999886654323344443
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.58 E-value=0.034 Score=52.64 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 235
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.57 E-value=0.037 Score=52.26 Aligned_cols=25 Identities=12% Similarity=0.019 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..|.|.|++|+||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 236
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.56 E-value=0.033 Score=51.57 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998754
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.56 E-value=0.035 Score=55.50 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=22.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998654
No 238
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.55 E-value=0.035 Score=55.11 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
++|.|+|+.|+||||||+.++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 239
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.52 E-value=0.035 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.7
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 240
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.50 E-value=0.072 Score=55.63 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=28.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.-.++.|.|.+|+||||||..++.....+-..++|++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3468999999999999999999886544333566665
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.49 E-value=0.034 Score=49.93 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999998875443
No 242
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.48 E-value=0.18 Score=54.34 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.+++.|.|.+|.||||++..+.......
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3688999999999999999988755443
No 243
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.36 E-value=0.029 Score=55.09 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=20.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987543
No 244
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.34 E-value=0.037 Score=51.97 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.28 E-value=0.032 Score=52.23 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 246
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.16 E-value=0.024 Score=58.90 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
+-|.++|++|+||||+|+.++......|
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4588999999999999999999765443
No 247
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.13 E-value=0.052 Score=50.66 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=22.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
....|.|+|.+|+|||||+..+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998754
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.13 E-value=0.034 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=16.4
Q ss_pred ceEEEEeecCcchHhHHHHHHH-hhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIF-NQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 234 (572)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 249
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.09 E-value=0.083 Score=49.05 Aligned_cols=109 Identities=16% Similarity=-0.009 Sum_probs=52.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-ccchHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-TSILPQCIKKRLQQ 288 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-~~~~~~~l~~~L~~ 288 (572)
-.+..++|..|.||||.|...+++...+-..++.+.-. .....+. ..+.+.++...... .... ..+.+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~R~ge----~~i~s~~g~~~~a~~~~~~-~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDNRYSE----EDVVSHNGLKVKAVPVSAS-KDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG-GGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCCcchH----HHHHhhcCCeeEEeecCCH-HHHHHHHhc
Confidence 46888999999999999998888765443334433311 0111122 23333333222211 1111 111122223
Q ss_pred CceEEEEecCC--ChhhhHHHhcCCCCCCCCcEEEEEeCCch
Q 038826 289 MNVCIILDKVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (572)
Q Consensus 289 kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIvTTR~~~ 328 (572)
+--+|++|.+. +.++++.+....+ .|..||+|-++.+
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 33499999984 3445544432112 3778999999644
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.06 E-value=0.059 Score=53.18 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+++|+|..|+|||||++.++..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988554
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.05 E-value=0.05 Score=48.17 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|.|..|.|||||.+.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998854
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.02 E-value=0.051 Score=53.50 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++++|+|.+|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999988654
No 253
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.01 E-value=0.13 Score=47.35 Aligned_cols=33 Identities=6% Similarity=0.026 Sum_probs=25.5
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccccceEEEE
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQFEGWCFM 244 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (572)
.|+|=|.-|+||||.++.+++.+..+-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377889999999999999999776554334444
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.00 E-value=0.047 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 255
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.97 E-value=0.07 Score=49.58 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=24.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..++|+|+|.+|+|||||+..+.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998765443
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.94 E-value=0.096 Score=49.38 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=23.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999997654
No 257
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.92 E-value=0.057 Score=53.47 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=23.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|+|+|..|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356999999999999999999988654
No 258
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.91 E-value=0.15 Score=47.21 Aligned_cols=30 Identities=10% Similarity=0.311 Sum_probs=25.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccce
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEG 240 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (572)
+-|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999987665554
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.91 E-value=0.047 Score=51.16 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=23.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 260
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.91 E-value=0.058 Score=54.58 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=23.8
Q ss_pred CCceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 208 PDFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+..+|+|+|.+|+|||||+..++....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999887543
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.88 E-value=0.064 Score=52.63 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=27.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccc-eEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFE-GWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~ 245 (572)
-.+++|.|.+|+|||||++.++..+..... .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458999999999999999999886543322 455664
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.88 E-value=0.052 Score=53.49 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=22.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++|.|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999999865
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.84 E-value=0.13 Score=61.93 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=53.8
Q ss_pred ccccccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc
Q 038826 196 IQRNNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE 274 (572)
Q Consensus 196 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~ 274 (572)
..+|..+|. .+-..-.+|.|.|.+|+||||||.+++......-..++|++ ........ . +..++....+.
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~Ees~~ql--~---A~~lGvd~~~L 787 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI--Y---ARKLGVDIDNL 787 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHH--H---HHHTTCCGGGC
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----ccchHHHH--H---HHHcCCChhhe
Confidence 334444443 22223568999999999999999999886554434577776 33333222 1 33333221111
Q ss_pred -------ccchHHHHHHHh-hcCceEEEEecCC
Q 038826 275 -------TSILPQCIKKRL-QQMNVCIILDKVD 299 (572)
Q Consensus 275 -------~~~~~~~l~~~L-~~kr~LlVLDdv~ 299 (572)
.++....+++.. ..+.-+||+|.+.
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEechh
Confidence 222333333322 3466799999985
No 264
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.83 E-value=0.061 Score=48.61 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=23.1
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.|+|.+|+||||+|.+++.. . ..++++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 689999999999999999876 2 2355664
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.81 E-value=0.052 Score=56.24 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998764
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.79 E-value=0.072 Score=47.93 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.++++|+|..|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999988654
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.76 E-value=0.059 Score=50.96 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=23.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|.|+.|+||||+++.++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998764
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.75 E-value=0.079 Score=48.10 Aligned_cols=24 Identities=8% Similarity=-0.173 Sum_probs=20.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++.|+|..|+||||++..++++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999998777754
No 269
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.75 E-value=0.096 Score=54.90 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=34.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVS 265 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~ 265 (572)
.-.++.|.|.+|+||||||..++..+... -..++|+. ...+..++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 34689999999999999999998865432 23566765 22344555555543
No 270
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.68 E-value=0.067 Score=50.13 Aligned_cols=29 Identities=17% Similarity=-0.057 Sum_probs=23.0
Q ss_pred EEEEeecCcchHhHHHHHHHhhcccc-cce
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQISSQ-FEG 240 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~ 240 (572)
.|.+.|.||+||||+|..++...... ++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 47789999999999999998865443 444
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.67 E-value=0.079 Score=52.93 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=24.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+++|+|..|+||||+++.++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999885543
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.65 E-value=0.058 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
-+.|.|.|.+|+||||||.+++.+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35789999999999999999998643
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.59 E-value=0.062 Score=52.88 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.++|.|.|+.|+||||||..++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999999874
No 274
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.59 E-value=0.096 Score=50.10 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..++.+.|.||+|||||+..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987554
No 275
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.58 E-value=0.081 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.058 Sum_probs=21.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.++.|+|.+|+||||||..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988644
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.56 E-value=0.048 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred EEEEeecCcchHhHHHHHHHhhc
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988754
No 277
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.56 E-value=0.08 Score=52.22 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=27.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..++|+|+|-||+||||+|..++..+...=..++-++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999998886554423445554
No 278
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.54 E-value=0.088 Score=50.67 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=26.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++|+|.|-||+||||+|..++..+...-..++-++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999998886554433445554
No 279
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.44 E-value=0.087 Score=51.80 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=27.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..++++|+|.+|+||||++..++..+...-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3568999999999999999999886554323344443
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.44 E-value=0.15 Score=62.29 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=59.8
Q ss_pred cccccccccccccccc-ccCCCceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHh
Q 038826 189 LVGLDSHIQRNNSLLC-VRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQI 267 (572)
Q Consensus 189 ~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l 267 (572)
..+...-...|..+|. .+-..-.++.|+|.+|+||||||.+++......-..++|++ .....+... +..+
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis----~E~s~~~~~-----a~~l 431 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKL 431 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHT
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----cCCCHHHHH-----HHHc
Confidence 3344444555555554 22234569999999999999999999886654445678887 333333321 3334
Q ss_pred hCCCCcc-------ccchHHHHHHHh-hcCceEEEEecCC
Q 038826 268 LGESTVE-------TSILPQCIKKRL-QQMNVCIILDKVD 299 (572)
Q Consensus 268 ~~~~~~~-------~~~~~~~l~~~L-~~kr~LlVLDdv~ 299 (572)
+....+. .+++...++... .++.-+||+|-+.
T Consensus 432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 3322221 223333343333 3456799999884
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.43 E-value=0.08 Score=53.52 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.5
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+++|+|..|+|||||++.++..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999988554
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.40 E-value=0.09 Score=54.55 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=24.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999888755443
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.31 E-value=0.051 Score=59.28 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++.......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 46888887777776666544 4789999999999999999999665443
No 284
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.28 E-value=0.082 Score=50.10 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|.|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 285
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.24 E-value=0.18 Score=46.90 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=25.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-cce
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-FEG 240 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~ 240 (572)
...|.|.|+.|+||||+++.+.+.+... ++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 3578999999999999999999876543 444
No 286
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.23 E-value=0.22 Score=52.03 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=36.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEeecccccc-cccHHHHHHHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMANVREESK-RVELVHLRDQIVS 265 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~s~-~~~~~~l~~~il~ 265 (572)
-+.++|.|.+|+|||+|+..+++.+.. +-+.++++- +.+ .....++.+.+..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~----iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE----ESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE----cccCcHHHHHHHHhhhc
Confidence 457999999999999999999987543 345556664 333 2355566666654
No 287
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.18 E-value=0.077 Score=53.54 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=28.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc--ccc----ceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS--SQF----EGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f----~~~~wv~ 245 (572)
.-.++.|+|.+|+|||||+..++.... ... ..++|+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 357999999999999999999987652 222 2348887
No 288
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.15 E-value=0.064 Score=50.44 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=21.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998863
No 289
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.14 E-value=0.11 Score=46.92 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998763
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.13 E-value=0.093 Score=50.19 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-.+++|+|..|+|||||.+.++.-...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999875543
No 291
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.12 E-value=0.16 Score=52.52 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=48.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccc----eEEEEeecccccc-cccHHHHHHHHHHHhhC--------CCCcc---
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFE----GWCFMANVREESK-RVELVHLRDQIVSQILG--------ESTVE--- 274 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~--------~~~~~--- 274 (572)
+.++|.|..|+|||+|+.++++....+.+ .++++- +.+ ...+.++.+.+...-.. ..++.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~----iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA----IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE----EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE----ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 45789999999999999999987654322 333443 222 23445555554432100 01100
Q ss_pred ---ccchHHHHHHHhh---cCceEEEEecCC
Q 038826 275 ---TSILPQCIKKRLQ---QMNVCIILDKVD 299 (572)
Q Consensus 275 ---~~~~~~~l~~~L~---~kr~LlVLDdv~ 299 (572)
.....-.+.++++ ++.+||++||+.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111123445553 689999999984
No 292
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.11 E-value=0.1 Score=50.89 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=26.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
.++|+|.|-||+||||+|..++..+...=..++-++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999998886544322344443
No 293
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.10 E-value=0.085 Score=48.67 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=23.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999764
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.08 E-value=0.056 Score=56.20 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=27.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.++|.|+|.+|+||||+|..++......-..+..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999998886544323344443
No 295
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.07 E-value=0.078 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 296
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.06 E-value=0.11 Score=49.38 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=22.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
. .+++|+|..|+|||||.+.++.-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 799999999999999999998743
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.06 E-value=0.062 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.122 Sum_probs=20.6
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+++|+|..|+|||||.+.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988764
No 298
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.02 E-value=0.096 Score=54.97 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999998865433 3344443
No 299
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.95 E-value=0.086 Score=45.81 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+.|.|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998874
No 300
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.94 E-value=0.069 Score=51.40 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=27.2
Q ss_pred ccccccccCCCceEEEEeecCcchHhHHHHHHHhhc
Q 038826 199 NNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 199 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+..+|.....+...|.++|++|.|||.+|..+++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 455555432334579999999999999999999853
No 301
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.82 E-value=0.54 Score=50.99 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=66.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc-----cc-eEEEEeecccccccccHHHH--------------HHHHHHHhhC
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ-----FE-GWCFMANVREESKRVELVHL--------------RDQIVSQILG 269 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~wv~~~~~~s~~~~~~~l--------------~~~il~~l~~ 269 (572)
-.+++|+|..|+|||||.+.++...... +. .+.++..-........+... ...++..++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3589999999999999999998743211 11 23333311100011122111 2233333333
Q ss_pred CCC-c--c-----ccchHHHHHHHhhcCceEEEEecCCCh---hh---hHHHhcCCCCCCCCcEEEEEeCCchhhhhcCC
Q 038826 270 EST-V--E-----TSILPQCIKKRLQQMNVCIILDKVDKF---GH---SEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGV 335 (572)
Q Consensus 270 ~~~-~--~-----~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~---~~~l~~~~~~~~~gs~IIvTTR~~~v~~~~~~ 335 (572)
... + . .+...-.+.+.|...+-+|+||.-.+. .. +..++..+. ...|..||++|-+...+..+ .
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tvi~vsHd~~~~~~~-a 539 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYV-S 539 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-C
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHh-C
Confidence 211 1 1 122233456677788889999987432 22 222222111 01355688888887666544 3
Q ss_pred ceEEEe
Q 038826 336 DYVYKV 341 (572)
Q Consensus 336 ~~~~~l 341 (572)
++++-+
T Consensus 540 drv~vl 545 (607)
T 3bk7_A 540 DRLIVF 545 (607)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 445544
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.81 E-value=0.1 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998863
No 303
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.77 E-value=0.21 Score=49.78 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=26.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..++...|-||+||||+|..++......-..++-++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467778899999999999998886655433455554
No 304
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.68 E-value=0.41 Score=45.00 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.1
Q ss_pred eEEEEeecCcchHhHHHHHHH
Q 038826 211 QMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~ 231 (572)
+.+.|.|..|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998765543
No 305
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.64 E-value=0.09 Score=46.34 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.63 E-value=0.11 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||.+.++.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998744
No 307
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.63 E-value=0.069 Score=48.10 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.2
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999887
No 308
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.56 E-value=0.26 Score=52.28 Aligned_cols=54 Identities=7% Similarity=-0.062 Sum_probs=37.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc-cceEEEEeecccccccccHHHHHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFMANVREESKRVELVHLRDQIVSQIL 268 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~ 268 (572)
.-.++.|.|.+|+||||||.+++...... =..++|+. -..+..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHc
Confidence 34689999999999999999998865543 33567775 23345566666655443
No 309
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.50 E-value=0.081 Score=49.18 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+|+|+|+.|+||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998865
No 310
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.43 E-value=0.13 Score=54.94 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=24.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
..+|.++|++|.||||+|+.++..+...|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 56899999999999999999988664333
No 311
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.39 E-value=0.092 Score=50.26 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 312
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.39 E-value=0.097 Score=45.51 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.38 E-value=0.088 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 314
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.38 E-value=0.12 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.064 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998874
No 315
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.37 E-value=0.098 Score=53.42 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=22.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999988643
No 316
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.33 E-value=0.22 Score=47.15 Aligned_cols=36 Identities=6% Similarity=0.101 Sum_probs=27.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc-ccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS-QFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~ 245 (572)
...|.|.|+.|+||||+++.+.+.+.. .++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 358999999999999999999987654 345344443
No 317
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.33 E-value=0.48 Score=44.06 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=24.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...|.|-|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999997765
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.33 E-value=0.085 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998873
No 319
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.31 E-value=0.12 Score=50.13 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=21.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998763
No 320
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.31 E-value=0.11 Score=47.64 Aligned_cols=40 Identities=13% Similarity=-0.030 Sum_probs=19.9
Q ss_pred ccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHh
Q 038826 191 GLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 191 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
|++.-.+.+.++.... ..-.|+|+|.+|+|||||...+.+
T Consensus 13 ~~~~~~~~m~~~~~~~--~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQG--QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcccchhHHHhHhhcC--CeEEEEEECcCCCCHHHHHHHHHh
Confidence 3444444444443322 234678999999999999988886
No 321
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.26 E-value=0.092 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998863
No 322
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.24 E-value=0.18 Score=47.64 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=24.9
Q ss_pred EEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 213 VRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
|+|.|-||+||||+|..++..+...-..++-++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 667999999999999999886655433445554
No 323
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.23 E-value=0.19 Score=47.30 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=21.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999976553
No 324
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.23 E-value=0.24 Score=51.85 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=46.4
Q ss_pred ceEEEEeecCcchHhHHHH-HHHhhcccccceE-EEEeecccccccccHHHHHHHHHHHhhC--------CCCcc-----
Q 038826 210 FQMVRTWSMSGISKTDIAG-AIFNQISSQFEGW-CFMANVREESKRVELVHLRDQIVSQILG--------ESTVE----- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~-~wv~~~~~~s~~~~~~~l~~~il~~l~~--------~~~~~----- 274 (572)
-+.++|.|.+|+|||+||. .+++... -+.+ +++- +++ ....+.++.+.+...-.. ..++.
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~-IGe--R~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVA-IGQ--KKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEE-ESC--CHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEE-cCC--CcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3568999999999999964 7777653 3433 3332 211 223455555555432110 11110
Q ss_pred -ccchHHHHHHHh--hcCceEEEEecCC
Q 038826 275 -TSILPQCIKKRL--QQMNVCIILDKVD 299 (572)
Q Consensus 275 -~~~~~~~l~~~L--~~kr~LlVLDdv~ 299 (572)
.....-.+.+++ .++.+||++||+.
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 001111233344 4789999999984
No 325
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.19 E-value=0.28 Score=51.27 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=46.2
Q ss_pred ceEEEEeecCcchHhHHHH-HHHhhcccccceE-EEEeecccccccccHHHHHHHHHHHhhCCCCcc----ccc------
Q 038826 210 FQMVRTWSMSGISKTDIAG-AIFNQISSQFEGW-CFMANVREESKRVELVHLRDQIVSQILGESTVE----TSI------ 277 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~-~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~----~~~------ 277 (572)
-+.++|.|.+|+|||+||. .+++... -+.. +++- +++ ....+.++.+.+...-.....-. .++
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~-iGe--R~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVA-IGQ--KQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEE-ESC--CHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEE-CCC--cchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3568999999999999964 7777653 3433 3332 221 22345555555544211110000 000
Q ss_pred ----hHHHHHHHh--hcCceEEEEecCC
Q 038826 278 ----LPQCIKKRL--QQMNVCIILDKVD 299 (572)
Q Consensus 278 ----~~~~l~~~L--~~kr~LlVLDdv~ 299 (572)
..-.+.+++ .++.+||++||+.
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111233334 4789999999984
No 326
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.19 E-value=0.12 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999873
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.17 E-value=0.099 Score=50.58 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=21.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998874
No 328
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.16 E-value=0.13 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999998874
No 329
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.11 E-value=0.18 Score=46.15 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=26.0
Q ss_pred eEEEEe-ecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTW-SMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578887 67999999999999886655433455565
No 330
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.07 E-value=0.13 Score=49.31 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998873
No 331
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.03 E-value=0.078 Score=51.04 Aligned_cols=26 Identities=4% Similarity=-0.014 Sum_probs=23.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...|+|.|..|+||||+|+.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988764
No 332
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.02 E-value=0.12 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.+++|+|..|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999988743
No 333
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.01 E-value=0.26 Score=45.77 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccc-cceEEEE
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQ-FEGWCFM 244 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv 244 (572)
..|.|.|..|+||||+++.+.+.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999876543 4334443
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.99 E-value=0.11 Score=45.54 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|.|+|.+|+|||||...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998873
No 335
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.98 E-value=0.11 Score=46.57 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999873
No 336
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.95 E-value=0.073 Score=56.37 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=24.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
...+|.+.|++|+||||+|+.++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998753
No 337
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.097 Score=50.28 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 338
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.94 E-value=0.12 Score=52.71 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=22.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999999754
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.94 E-value=0.11 Score=51.33 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=22.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
.-.+++|+|..|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999988654
No 340
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.91 E-value=0.11 Score=48.84 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.90 E-value=0.14 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998774
No 342
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.88 E-value=0.2 Score=47.22 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=26.8
Q ss_pred CceEEEEee-cCcchHhHHHHHHHhhcccc-cceEEEEe
Q 038826 209 DFQMVRTWS-MSGISKTDIAGAIFNQISSQ-FEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (572)
..++|+|+| -||+||||+|..++..+... =..++.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 357888875 48999999999999876654 33445554
No 343
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.87 E-value=0.076 Score=59.87 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCcccccccccccccccccc-----------CCCceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 187 EDLVGLDSHIQRNNSLLCVR-----------LPDFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
..++|.+...+.|.+.+... ....+.+.++|.+|+|||+||+.+++.....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46778877776666555321 1124568899999999999999999976443
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.85 E-value=0.11 Score=46.80 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=19.6
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.|+|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.83 E-value=0.17 Score=52.36 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998865544
No 346
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.83 E-value=0.89 Score=44.13 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=20.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CceEEEEecCCCchHHHHHHHhcC
Confidence 346889999999999999988763
No 347
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.73 E-value=0.15 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998874
No 348
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.71 E-value=0.25 Score=46.29 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=26.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc--ccceEE
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS--QFEGWC 242 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~ 242 (572)
...|.|.|+.|+||||+++.+.+.+.. .++...
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 568999999999999999999997654 344433
No 349
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.70 E-value=0.12 Score=48.75 Aligned_cols=25 Identities=16% Similarity=-0.112 Sum_probs=22.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...+|+|.|..|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999998775
No 350
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.68 E-value=0.11 Score=50.34 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998873
No 351
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.65 E-value=0.25 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc--cccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS--SQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (572)
..+++.+.|-||+||||+|..++..+. ..-..++-++
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 468999999999999999999888765 4434455555
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.63 E-value=0.31 Score=58.66 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=55.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCcc-------ccchHHHH
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVE-------TSILPQCI 282 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~~~~l 282 (572)
-++|-|+|+.|+||||||.++.......=..++|+. ..+..+... +..++-..++. .++....+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 579999999999999999999887666667788997 444444443 55555443322 23444555
Q ss_pred HHHhh-cCceEEEEecC
Q 038826 283 KKRLQ-QMNVCIILDKV 298 (572)
Q Consensus 283 ~~~L~-~kr~LlVLDdv 298 (572)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 45679999988
No 353
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.61 E-value=0.16 Score=49.51 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999874
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.57 E-value=0.14 Score=46.10 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=21.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 237 (572)
.--|.|+|.+|+|||||.+.+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 3467899999999999997776654443
No 355
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.54 E-value=1 Score=56.80 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=42.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEeecccccccccHHHHHHHHHHHhhCCCCccccchHHHHHHHhhcCc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMANVREESKRVELVHLRDQIVSQILGESTVETSILPQCIKKRLQQMN 290 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~kr 290 (572)
+-|.++|++|+|||++|+.+..... .+.. ..+. .+...+...+++.+-..+............ -.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-~~~~-~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~----P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-LYDV-VGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLL----PKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-SCEE-EEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEE----EBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-CCce-EEEE----eecCCCHHHHHHHHHHHhhhccccCCcccc----CCCCCce
Confidence 5688999999999999987776542 2332 3344 344444555554444332211000000000 0003577
Q ss_pred eEEEEecCC
Q 038826 291 VCIILDKVD 299 (572)
Q Consensus 291 ~LlVLDdv~ 299 (572)
.++.+||++
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 888999974
No 356
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.51 E-value=0.16 Score=53.65 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=22.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
..++|.|+|.+|+||||++..++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999998875543
No 357
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.46 E-value=0.15 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.1
Q ss_pred CceEEEEeecCcchHhHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
....|+|+|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356788999999999999999876
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.46 E-value=0.15 Score=45.96 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=21.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998874
No 359
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.45 E-value=0.13 Score=44.89 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-|+|+|.+|+|||||...+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999886
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.42 E-value=0.13 Score=46.09 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=20.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998873
No 361
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.42 E-value=0.072 Score=57.87 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCccccccccccccccccccCC---------CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 187 EDLVGLDSHIQRNNSLLCVRLP---------DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 187 ~~~vGR~~~~~~l~~~L~~~~~---------~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.++|.+.....+...|..+.. +-.-|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4688888877777665554420 00148899999999999999998854
No 362
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.41 E-value=0.13 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999863
No 363
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.41 E-value=0.18 Score=44.61 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
....|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998873
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.37 E-value=0.12 Score=46.25 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=21.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998864
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.35 E-value=0.12 Score=45.25 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.8
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.13 Score=45.08 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999886
No 367
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.30 E-value=0.18 Score=53.07 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=23.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF 238 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 238 (572)
..+|.++|++|+||||+|+.++......|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45788999999999999999998654333
No 368
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.28 E-value=0.13 Score=44.80 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999886
No 369
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.27 E-value=0.28 Score=49.06 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=28.9
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
..+++.+.|-||+||||+|..++..+...-..++-++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578889999999999999999887665544555555
No 370
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.25 E-value=0.14 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999864
No 371
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.24 E-value=0.16 Score=51.02 Aligned_cols=27 Identities=11% Similarity=-0.003 Sum_probs=23.0
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
+..+|+|+|.+|+|||||+..+.....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999876543
No 372
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.23 E-value=0.16 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.8
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4588999999999999999876
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.21 E-value=0.14 Score=44.61 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999998876
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.17 E-value=0.14 Score=44.96 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998863
No 375
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.13 E-value=0.17 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999998763
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.12 E-value=0.16 Score=46.83 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=21.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|.|+|.+|+|||||...+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998874
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.09 E-value=0.14 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.8
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 378
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.05 E-value=0.13 Score=45.57 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=20.0
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998873
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.04 E-value=0.14 Score=44.69 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=19.1
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999886
No 380
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.99 E-value=0.19 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=20.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
+-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999874
No 381
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.97 E-value=0.17 Score=47.47 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=23.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 382
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.96 E-value=0.14 Score=46.04 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.3
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999988776
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.96 E-value=0.15 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-|+|+|.+|+|||||...+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999998874
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.92 E-value=0.15 Score=44.44 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=18.6
Q ss_pred EEEeecCcchHhHHHHHHHh
Q 038826 213 VRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~ 232 (572)
|+|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999876
No 385
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.85 E-value=0.15 Score=54.62 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-.+|+|+|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 368999999999999999999987653
No 386
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.83 E-value=0.31 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhhccc
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
+.++|.|.+|+|||+|+..+++....
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 46789999999999999999986543
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.81 E-value=0.16 Score=44.42 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999876
No 388
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.81 E-value=0.21 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998874
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.79 E-value=0.15 Score=45.62 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=19.6
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998873
No 390
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.76 E-value=0.17 Score=49.03 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEeecCcchHhHHHHHHHhh
Q 038826 212 MVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998873
No 391
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.73 E-value=0.24 Score=50.40 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=27.9
Q ss_pred CceEEEEee-cCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWS-MSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 468888886 8999999999998886655433455555
No 392
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.71 E-value=0.16 Score=45.86 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.5
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 3578999999999999988876
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.70 E-value=0.16 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988763
No 394
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.70 E-value=0.16 Score=45.90 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.9
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..|+|+|.+|+|||||...+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999887
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.68 E-value=0.18 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+.+|+|..|.|||||+.+++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999998763
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.62 E-value=0.17 Score=44.85 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999999876
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.60 E-value=0.16 Score=44.32 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.59 E-value=0.17 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|.|+|.+|+|||||...+.++
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999877764
No 399
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.59 E-value=0.16 Score=44.84 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 34688999999999999999876
No 400
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.58 E-value=0.34 Score=44.77 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=24.6
Q ss_pred EEEEe-ecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 212 MVRTW-SMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 212 vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+|+|+ +-||+||||+|..++..+...- .++-++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 46664 7799999999999998665544 566665
No 401
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.57 E-value=0.23 Score=45.53 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=22.4
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 35799999999999999998887654
No 402
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.52 E-value=0.17 Score=44.78 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|.|+|.+|+|||||...+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45688999999999999999887
No 403
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.47 E-value=0.16 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
-.+++|+|..|+|||||.+.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998743
No 404
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.43 E-value=0.15 Score=45.15 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999876
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.42 E-value=0.18 Score=51.12 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=22.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...++|+|..|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987543
No 406
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.39 E-value=0.22 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.104 Sum_probs=20.9
Q ss_pred ceEEEEeecCcchHhHHH-HHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIA-GAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~~~~~~~ 235 (572)
-+.++|.|.+|+|||+|| ..+++...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 356889999999999996 47777654
No 407
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.36 E-value=0.27 Score=50.20 Aligned_cols=46 Identities=15% Similarity=-0.052 Sum_probs=33.3
Q ss_pred CccccccccccccccccccCCCceEEEEeecCcchHhHHHHHHHhh
Q 038826 188 DLVGLDSHIQRNNSLLCVRLPDFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 188 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.++|....++++.+.+..-...-..|.|.|.+|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 5778777777776665543222223589999999999999988874
No 408
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.36 E-value=0.18 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999873
No 409
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.35 E-value=0.14 Score=46.77 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.5
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999875
No 410
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.35 E-value=0.33 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.102 Sum_probs=20.7
Q ss_pred ceEEEEeecCcchHhHHH-HHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIA-GAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~~~~~~~ 235 (572)
-+.++|.|.+|+|||+|| ..+++...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 356899999999999996 46777554
No 411
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.29 E-value=0.18 Score=45.01 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998863
No 412
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.26 E-value=0.18 Score=44.94 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|.|+|.+|+|||||...+.+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34688999999999999999886
No 413
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.21 E-value=0.18 Score=45.07 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999886
No 414
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.21 E-value=0.18 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999876
No 415
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.16 E-value=0.19 Score=54.11 Aligned_cols=27 Identities=15% Similarity=-0.024 Sum_probs=23.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
...+|.|.|++|+||||+|+.+..++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999998754
No 416
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.15 E-value=0.45 Score=49.44 Aligned_cols=85 Identities=22% Similarity=0.131 Sum_probs=48.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccccc----ceEEEEeecccccc-cccHHHHHHHHHHHhhCC--------CCcc--
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQF----EGWCFMANVREESK-RVELVHLRDQIVSQILGE--------STVE-- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~wv~~~~~~s~-~~~~~~l~~~il~~l~~~--------~~~~-- 274 (572)
-+.++|.|.+|+|||+|+..+++....+. +.++++- +.+ .....++.+.+...-... .++.
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~----iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~ 227 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA----MGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAV 227 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE----EEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE----ccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHH
Confidence 34678899999999999999998654321 2334443 222 234555665555431110 1100
Q ss_pred ----ccchHHHHHHHh---hcCceEEEEecC
Q 038826 275 ----TSILPQCIKKRL---QQMNVCIILDKV 298 (572)
Q Consensus 275 ----~~~~~~~l~~~L---~~kr~LlVLDdv 298 (572)
.....-.+.+++ .++.+||++||+
T Consensus 228 ~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 228 ERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111112234444 468999999997
No 417
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.13 E-value=0.19 Score=44.66 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=20.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999885
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.08 E-value=0.18 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 44688999999999999999886
No 419
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.07 E-value=0.18 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998874
No 420
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.07 E-value=0.2 Score=44.29 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=19.1
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.|+|+|.+|+|||||...+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999876
No 421
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.06 E-value=0.22 Score=49.94 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.6
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+++|+|.+|+|||||...+....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999988643
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.06 E-value=0.19 Score=44.81 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=19.1
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||...+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998876
No 423
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.03 E-value=0.19 Score=46.90 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=18.6
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|.|+|-+|+|||+|...+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 367899999999999998876
No 424
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.03 E-value=0.15 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-.|+|+|.+|+|||||...+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999853
No 425
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.98 E-value=0.21 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.2
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
...+|.|.|++|+||||+|+.+.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999875
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.98 E-value=0.19 Score=44.62 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=19.8
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988763
No 427
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.94 E-value=0.19 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 34688999999999999999887
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.93 E-value=0.31 Score=48.93 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.7
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhccc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISS 236 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 236 (572)
-.+++|+|..|+|||||.+.++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999997654
No 429
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.93 E-value=0.2 Score=46.07 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=20.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998873
No 430
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.89 E-value=0.19 Score=44.68 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 34688999999999999999886
No 431
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.89 E-value=2.4 Score=39.80 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.4
Q ss_pred EEEeecCcchHhHHHHHHHhhc
Q 038826 213 VRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+.|+|..|.|||.+|..++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7789999999999998887765
No 432
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.88 E-value=0.19 Score=45.49 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998863
No 433
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.83 E-value=0.19 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|.|||||.+.+.--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999999998873
No 434
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.83 E-value=0.2 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346889999999999999998873
No 435
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.80 E-value=0.21 Score=45.83 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34688999999999999999876
No 436
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.78 E-value=0.23 Score=50.00 Aligned_cols=26 Identities=12% Similarity=-0.098 Sum_probs=22.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhc
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQI 234 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 234 (572)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999988743
No 437
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.76 E-value=0.2 Score=44.43 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4588999999999999999876
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.76 E-value=0.21 Score=45.04 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999998873
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.61 E-value=0.21 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=19.8
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999999876
No 440
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.61 E-value=0.21 Score=45.48 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 44688999999999999999876
No 441
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.59 E-value=0.21 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.188 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|.|..|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999873
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.59 E-value=0.2 Score=50.32 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 358999999999999999999873
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.58 E-value=0.25 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.8
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998763
No 444
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.55 E-value=0.22 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999998863
No 445
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.48 E-value=0.19 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=21.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-.+++|+|..|+|||||.+.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 446
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.43 E-value=0.58 Score=48.85 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=45.6
Q ss_pred ceEEEEeecCcchHhHHH-HHHHhhcccccce-EEEEeecccccc-cccHHHHHHHHHHHhhCC--------CCcc----
Q 038826 210 FQMVRTWSMSGISKTDIA-GAIFNQISSQFEG-WCFMANVREESK-RVELVHLRDQIVSQILGE--------STVE---- 274 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~-~~wv~~~~~~s~-~~~~~~l~~~il~~l~~~--------~~~~---- 274 (572)
-+.++|.|..|+|||+|| ..+.++.. -+. ++++- +.+ ...+.++.+.+...-... .++.
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~~--~dv~~V~~~----IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQRD--SGIKCIYVA----IGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTSS--SSCEEEEEE----ESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhcc--CCceEEEEE----ecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 356899999999999997 46777532 333 34443 333 234455555544321111 1100
Q ss_pred --ccchHHHHHHHh--hcCceEEEEecCC
Q 038826 275 --TSILPQCIKKRL--QQMNVCIILDKVD 299 (572)
Q Consensus 275 --~~~~~~~l~~~L--~~kr~LlVLDdv~ 299 (572)
.....-.+.+++ .++.+||++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 000111223333 5789999999984
No 447
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.43 E-value=0.23 Score=44.91 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34688999999999999999876
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.39 E-value=0.21 Score=45.85 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999999886
No 449
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.39 E-value=0.21 Score=45.37 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998873
No 450
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.38 E-value=0.22 Score=44.98 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|+|+|.+|+|||||...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999874
No 451
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.37 E-value=0.31 Score=49.79 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=25.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEE
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFM 244 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (572)
-.+++|+|..|+|||||.+.++--.. ..+.+++
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i 79 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQI 79 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEE
Confidence 45899999999999999999986432 2344444
No 452
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.34 E-value=0.47 Score=47.69 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=25.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
...++.+.|-||+||||+|..++......=..++-++
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3556777899999999999988876544422344443
No 453
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.33 E-value=0.22 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 358999999999999999999873
No 454
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.31 E-value=0.22 Score=44.75 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999986
No 455
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.30 E-value=0.22 Score=44.93 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=20.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999998873
No 456
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.27 E-value=0.22 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|.|..|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999999873
No 457
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.19 E-value=0.14 Score=46.90 Aligned_cols=23 Identities=17% Similarity=-0.035 Sum_probs=20.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999988765
No 458
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.14 E-value=0.23 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.10 E-value=0.22 Score=45.22 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=19.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999998876
No 460
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.07 E-value=0.25 Score=44.35 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=20.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999985
No 461
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.07 E-value=0.33 Score=45.08 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=21.4
Q ss_pred eEEEEeec-CcchHhHHHHHHHhhcccc
Q 038826 211 QMVRTWSM-SGISKTDIAGAIFNQISSQ 237 (572)
Q Consensus 211 ~vv~I~G~-gGiGKTtLA~~~~~~~~~~ 237 (572)
++|.|.|. ||+||||+|..++..+...
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57888886 8999999999888755433
No 462
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.07 E-value=0.24 Score=44.67 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.5
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-.|+|+|.+|+|||||...+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 44688999999999999999887
No 463
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.05 E-value=0.24 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999863
No 464
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.03 E-value=0.36 Score=49.78 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=26.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
-.+++|+|..|+|||||.+.+...+...-..++++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 468999999999999999999886544322344443
No 465
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=88.02 E-value=0.37 Score=48.92 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=26.9
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+++.+.|-||+||||+|..++......-..+.-++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57888999999999999998876554434455665
No 466
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.01 E-value=0.24 Score=44.51 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.9
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999999886
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.01 E-value=0.24 Score=44.69 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|.|+|.+|+|||||...+.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3578999999999999999886
No 468
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.99 E-value=0.31 Score=46.56 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.9
Q ss_pred CceEEEEe-ecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 209 DFQMVRTW-SMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 209 ~~~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
+.++|+|+ +-||+||||+|..++..+...-..++-++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35788887 67899999999999886654433445554
No 469
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.97 E-value=0.24 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.+++|+|..|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 358999999999999999999873
No 470
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.96 E-value=0.24 Score=45.15 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34688999999999999999876
No 471
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.92 E-value=0.24 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-|+|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999874
No 472
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.91 E-value=0.24 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=21.1
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-.+++|.|..|+|||||.+.++-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999986
No 473
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.86 E-value=0.23 Score=53.17 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhhcc
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQIS 235 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 235 (572)
..+|.+.|++|+||||+|+.+..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999988654
No 474
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.86 E-value=0.25 Score=44.40 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34688999999999999999876
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.85 E-value=0.24 Score=44.75 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.3
Q ss_pred CceEEEEeecCcchHhHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
....|+|+|.+|+|||||...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356789999999999999999877
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.83 E-value=0.22 Score=44.50 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=20.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.82 E-value=0.24 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4688999999999999999876
No 478
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.82 E-value=0.24 Score=44.96 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=20.4
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 45688999999999999999876
No 479
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.80 E-value=0.25 Score=44.38 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.2
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
-.|+|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998873
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.76 E-value=0.26 Score=44.38 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=20.3
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
--|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998863
No 481
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.76 E-value=0.32 Score=49.23 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.4
Q ss_pred eEEEEeecCcchHhHHHHHHHhhcccccceEEEEee
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQISSQFEGWCFMAN 246 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~ 246 (572)
..++|+|..|+|||||++.+...+.. -.+.+.+.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECC
Confidence 57999999999999999999886543 245566653
No 482
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.72 E-value=0.2 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=20.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999988874
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.70 E-value=0.24 Score=48.76 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.5
Q ss_pred EEEEeecCcchHhHHHHHHHh
Q 038826 212 MVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 212 vv~I~G~gGiGKTtLA~~~~~ 232 (572)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999765
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.69 E-value=0.27 Score=44.90 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
..-|+|+|.+|+|||||...+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999876
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.66 E-value=0.25 Score=44.70 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999875
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.65 E-value=0.12 Score=53.22 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 356899999999999999999987
No 487
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.65 E-value=0.27 Score=45.12 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=19.6
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
--|+|+|.+|+|||||...+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998886
No 488
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.62 E-value=0.37 Score=45.81 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=24.2
Q ss_pred eEEEEe-ecCcchHhHHHHHHHhhcccccceEEEEe
Q 038826 211 QMVRTW-SMSGISKTDIAGAIFNQISSQFEGWCFMA 245 (572)
Q Consensus 211 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (572)
++|+|+ +-||+||||+|..++..+...=..++-++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567775 45889999999998886554323345554
No 489
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=87.62 E-value=0.26 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.6
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-.|+|+|.-|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998866
No 490
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.59 E-value=0.75 Score=52.34 Aligned_cols=23 Identities=4% Similarity=-0.322 Sum_probs=20.4
Q ss_pred CceEEEEeecCcchHhHHHHHHH
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIF 231 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~ 231 (572)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999883
No 491
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.59 E-value=0.29 Score=45.68 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=21.0
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998873
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.57 E-value=0.27 Score=44.99 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 3588999999999999999886
No 493
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.57 E-value=0.28 Score=45.31 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.7
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998874
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.54 E-value=0.25 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.1
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
.+++|+|.+|+|||||...+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999988653
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.52 E-value=0.28 Score=44.78 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.2
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.--|+|+|.+|+|||||...+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 34688999999999999999876
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.50 E-value=0.31 Score=45.91 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.9
Q ss_pred ceEEEEeecCcchHhHHHHHHHh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
...|+|+|.+|+|||||...+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 45789999999999999999887
No 497
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.42 E-value=0.26 Score=48.55 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.8
Q ss_pred CceEEEEeecCcchHhHHHHHHHhh
Q 038826 209 DFQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998763
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.36 E-value=0.29 Score=44.60 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=19.7
Q ss_pred eEEEEeecCcchHhHHHHHHHh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFN 232 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~ 232 (572)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999886
No 499
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.33 E-value=0.3 Score=48.04 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.3
Q ss_pred ceEEEEeecCcchHhHHHHHHHhh
Q 038826 210 FQMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998873
No 500
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.19 E-value=0.33 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.5
Q ss_pred eEEEEeecCcchHhHHHHHHHhh
Q 038826 211 QMVRTWSMSGISKTDIAGAIFNQ 233 (572)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~~~~~ 233 (572)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998863
Done!