BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038830
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 29/342 (8%)
Query: 9 FLTQSCAVAGIYHH---MNKGLIKLPLTGDQVL-----------VPGLRPLDPQDTPSFI 54
F + +C++ + H + +G+I P + L +PGL+ +D FI
Sbjct: 146 FSSSACSLLNVMHFRSFVERGII--PFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFI 203
Query: 55 NDSASYPAFFDMIITRQFSNIDKADWILCNTFYELEKEVTEWLGKHW-LLRTIGPTLPSI 113
+ + I ++K IL NTF ELE +V L + IGP LPS+
Sbjct: 204 RTTNPNDIMLEFFIEVA-DRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGP-LPSL 261
Query: 114 YLDK-QIEDDKEYGFSIFEPDIESSMKWLNDRANGSVVYVSFGSMATLKIEEMEELPCGL 172
QI ++++ D E + WL + GSVVYV+FGS + E++ E GL
Sbjct: 262 LKQTPQIHQLDSLDSNLWKEDTEC-LDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGL 320
Query: 173 KASDKYFLWVVRE----SEQSKLPENFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCG 228
K FLW++R F++E + +GL+ +WCPQ VL H + G FLTHCG
Sbjct: 321 ANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCG 380
Query: 229 WNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCISEI 288
WNST E++ GVPM+ P + DQ T+ +++ + W++G+++ + V+RE +A I+E+
Sbjct: 381 WNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEV 436
Query: 289 LEGKRDKEIKQNADKWRNFAKEAVAKGGSSDKNIDDFVANLI 330
+ G + K++KQ A + + A+E GG S N++ + +++
Sbjct: 437 IAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 141/264 (53%), Gaps = 27/264 (10%)
Query: 77 KADWILCNTFYELEKEVTEWLGKHWLLRT-IGPTLPSIYLDKQIEDDKEYGFSIFEPDIE 135
+A+ IL NTF+ELE + L + L + + P P + + KQ E
Sbjct: 206 EAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEES--------- 256
Query: 136 SSMKWLNDRANGSVVYVSFGSMATLKIEEMEELPCGLKASDKYFLWVVRESEQ------- 188
+KWL+++ GSV+YVSFGS TL E++ EL GL S++ FLWV+R
Sbjct: 257 ECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYF 316
Query: 189 ---------SKLPENFSDETSQKGLVVN-WCPQLGVLAHEATGCFLTHCGWNSTLEALSL 238
+ LP F + T ++G V+ W PQ VLAH +TG FLTHCGWNSTLE++
Sbjct: 317 DSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVS 376
Query: 239 GVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCISEILEGKRDKEIK 298
G+P++A PL+ +Q N+ + + + L+ A + G+VRRE +A + ++EG+ K ++
Sbjct: 377 GIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVR 436
Query: 299 QNADKWRNFAKEAVAKGGSSDKNI 322
+ + A + G+S K +
Sbjct: 437 NKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 143/275 (52%), Gaps = 26/275 (9%)
Query: 62 AFFDMIITRQFSNIDKADWILCNTFYELEKEVTEWL-GKHWLLRTIGP----TLPSIYLD 116
+ F ++ R + KA + N+F EL+ +T L K IGP T P +
Sbjct: 198 SLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVV-- 255
Query: 117 KQIEDDKEYGFSIFEPDIESSMKWLNDRANGSVVYVSFGSMATLKIEEMEELPCGLKASD 176
P+ ++WL +R SVVY+SFG++ T E+ L L+AS
Sbjct: 256 ---------------PNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASR 300
Query: 177 KYFLWVVRESEQSKLPENFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTLEAL 236
F+W +R+ + LPE F ++T G+VV W PQ VLAHEA G F+THCGWNS E++
Sbjct: 301 VPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESV 360
Query: 237 SLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCISEILEGKRDKE 296
+ GVP++ P + DQ N + V DV ++G+++ E G+ + + C +IL ++ K+
Sbjct: 361 AGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKK 417
Query: 297 IKQNADKWRNFAKEAVAKGGSSDKNIDDFVANLIS 331
+++N R A AV GSS +N V +L+S
Sbjct: 418 LRENLRALRETADRAVGPKGSSTENFITLV-DLVS 451
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 25/285 (8%)
Query: 38 LVPGLRPLDPQDTPSFINDSASYPAFFDMIITRQFSNIDKADWILCNTFYELEKEV-TEW 96
++PG L D P + P F ++ + + +A+ + N+F + + E
Sbjct: 178 VLPGFPELKASDLPEGVIKDIDVP--FATMLHKMGLELPRANAVAINSFATIHPLIENEL 235
Query: 97 LGKHWLLRTIGP---TLPSIYLDKQIEDDKEYGFSIFEPDIESSMKWLNDRANGSVVYVS 153
K LL +GP T P +++ D E+G ++WL+ N SVVY+S
Sbjct: 236 NSKFKLLLNVGPFNLTTP----QRKVSD--EHG----------CLEWLDQHENSSVVYIS 279
Query: 154 FGSMATLKIEEMEELPCGLKASDKYFLWVVRESEQSKLPENFSDETSQKGLVVNWCPQLG 213
FGS+ T E+ L L+ F+W R + KLP+ F + T KG +V W PQ+
Sbjct: 280 FGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVE 339
Query: 214 VLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 273
+L H + G FLTH GWNS LE + GVPM++ P + DQ N+ V ++G+ V +
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV---DN 396
Query: 274 GIVRREAIAHCISEILEGKRDKEIKQNADKWRNFAKEAVAKGGSS 318
G++ +E+I + + ++ ++Q K + A +AV + G+S
Sbjct: 397 GVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTS 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 23/303 (7%)
Query: 39 VPGLRPLDPQDT--PSFINDSASYPAFFDMIITRQFSNIDKADWILCNTFYELEKEVTEW 96
+PG+ P + + N Y A++ + +F + I+ NTF +LE+ +
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKL--AERFRD---TKGIIVNTFSDLEQSSIDA 230
Query: 97 LGKHWLLRTIGPTLPSIYLDKQIEDDK-EYGFSIFEPDIESSMKWLNDRANGSVVYVSFG 155
L H +P IY + D K + + + + +KWL+++ + SVV++ FG
Sbjct: 231 LYDH------DEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 156 SMA-TLKIEEMEELPCGLKASDKYFLWVVRESEQSKLPENFSD--ETSQKGLVVNWCPQL 212
SM + ++ E+ GLK S FLW +E+ PE F + E KG++ W PQ+
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQV 343
Query: 213 GVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPAD- 271
VLAH+A G F++HCGWNS LE++ GVP++ P++ +Q N+ ++ W +GL + D
Sbjct: 344 EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY 403
Query: 272 EKG--IVRREAIAHCISEILEGKRDKEIKQNADKWRNFAKEAVAKGGSSDKNIDDFVANL 329
KG +V E I + ++++ +D + + + + ++ AV GGSS ++ + ++
Sbjct: 404 RKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
Query: 330 ISS 332
S
Sbjct: 462 TGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 27/302 (8%)
Query: 39 VPGLRPLDPQDT--PSFINDSASYPAFFDMIITRQFSNIDKADWILCNTFYELEKEVTEW 96
+PG+ P + + N Y A++ + +F + I+ NTF +LE+ +
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKL--AERFRD---TKGIIVNTFSDLEQSSIDA 230
Query: 97 LGKHWLLRTIGPTLPSIYLDKQIEDDK-EYGFSIFEPDIESSMKWLNDRANGSVVYVSFG 155
L H +P IY + D K + + + + +KWL+++ + SVV++ FG
Sbjct: 231 LYDH------DEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 156 SMA-TLKIEEMEELPCGLKASDKYFLWVVRESEQSKLPENFSD--ETSQKGLVVNWCPQL 212
SM + ++ E+ GLK S FLW +E+ PE F + E KG++ W PQ+
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQV 343
Query: 213 GVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPAD- 271
VLAH+A G F++HCGWNS LE++ GVP++ P++ +Q N+ ++ W +GL + D
Sbjct: 344 EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY 403
Query: 272 EKG--IVRREAIAHCISEILEGKRDKEIKQNADKWRNFAKEAVAKGGSS----DKNIDDF 325
KG +V E I + ++++ +D + + + + ++ AV GGSS K IDD
Sbjct: 404 RKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
Query: 326 VA 327
Sbjct: 462 TG 463
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 205 VVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKM 264
V W PQL +L + F+TH G ST+EALS VPMVA+P +Q+ N++ ++++ +
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GL 365
Query: 265 GLKVPADEKGIVR-REAIAHCISEILEGKRDKEIKQ 299
G +P D+ + REA+ S+ +R ++Q
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 146 NGSVVYVSFGSMATLKIEEMEE-LPCGLKASDKYFLWVVRESEQSKLPENFSDETSQKGL 204
NG VV+ S GS + EE + L + LW + N D
Sbjct: 21 NGVVVF-SLGSXVSNXTEERANVIASALAQIPQKVLW--------RFDGNKPDTLGLNTR 71
Query: 205 VVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTN 254
+ W PQ +L H T F+TH G N EA+ G+P V +PL+ DQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 183 VRESEQSKLPENFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPM 242
V +E +LP+N V +W PQL +L F+TH G + E L+ PM
Sbjct: 273 VTPAELGELPDNVE--------VHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPM 322
Query: 243 VAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCISEI-LEGKRDKEIKQNA 301
+A+P DQ N+ + GL V + + EA A + E L D E+ A
Sbjct: 323 IAVPQAVDQFGNADML-----QGLGV---ARKLATEEATADLLRETALALVDDPEV---A 371
Query: 302 DKWRNFAKEAVAKGGS 317
+ R E +GG+
Sbjct: 372 RRLRRIQAEMAQEGGT 387
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 207 NWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNS 255
W P VLAH A C LTH + LEA + GVP+V +P + ++ S
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS 333
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 140 WLNDRANG-SVVYVSFGSMATLKIEEMEELPCGLKASDKYFLWV----VRESEQSKLPEN 194
WL+ R +VY++ G+ + +E + GL D L + S ++P N
Sbjct: 234 WLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPAN 293
Query: 195 FSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQS 252
E+ W PQ +L H + H G +TL AL GVP ++ P W S
Sbjct: 294 VRLES--------WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 207 NWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGL 266
W P + VL +AT C +TH G + EAL G P+V +P D ++ V D +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 267 KVPADE 272
+P ++
Sbjct: 360 VLPGEK 365
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 207 NWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGL 266
W P + VL +AT C +TH G + EAL G P+V +P D ++ V D +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 267 KVPADE 272
+P ++
Sbjct: 360 VLPGEK 365
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 205 VVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTN 254
VV W P LG L E + H G + L AL+ GVP +P + Q TN
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 205 VVNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTN 254
VV W P LG L E + H G + L AL+ GVP +P + Q TN
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 226 HCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 275
H G +TL LS GVP V++P+ + +S ++ G++VP ++ G+
Sbjct: 306 HGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGV 354
>pdb|1A8M|A Chain A, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|B Chain B, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|C Chain C, Tumor Necrosis Factor Alpha, R31d Mutant
Length = 157
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 122 DKEYGFSIFEPDIESSMKWLNDRANG 147
DK + P E ++WLNDRAN
Sbjct: 10 DKPVAHVVANPQAEGQLQWLNDRANA 35
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 226 HCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 275
H G +TL LS GVP V++P+ + +S ++ G++VP ++ G+
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPV-IAEVWDSARLLHAAGAGVEVPWEQAGV 355
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 206 VNWCPQLGVLAHEATGCFLTHCGWNSTLEALSLGVPMVAMPLWTDQSTNSKYVMDVWKMG 265
V W P L V+A + H G STL LS GVP + +P + ++ V D
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 266 LKVPADEKGIVRREAIAHCISEI 288
+P ++ EAIA E+
Sbjct: 326 ALLPGEDST----EAIADSCQEL 344
>pdb|2YR4|A Chain A, Crystal Structure Of L-Phenylalanine Oxiase From
Psuedomonas Sp. P-501
pdb|2YR4|B Chain B, Crystal Structure Of L-Phenylalanine Oxiase From
Psuedomonas Sp. P-501
pdb|2YR5|A Chain A, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR5|B Chain B, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR6|A Chain A, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR6|B Chain B, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|3AYI|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYI|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYJ|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYJ|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYL|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYL|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
Length = 721
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 3 GLIGAAFLTQSCAVAGIYHHMNKGLIKLPLTGDQVLVPGLRPL 45
G + AF++ AVAG+ N+G + T + LV GLRP+
Sbjct: 659 GWLEGAFMSALNAVAGLIVRANRGDVSALSTEARPLVIGLRPV 701
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,548,901
Number of Sequences: 62578
Number of extensions: 452707
Number of successful extensions: 1048
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 30
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)