Query 038832
Match_columns 337
No_of_seqs 165 out of 826
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 2.1E-60 4.5E-65 474.5 26.8 329 1-332 111-460 (464)
2 PF03016 Exostosin: Exostosin 100.0 5E-58 1.1E-62 432.7 21.9 277 2-285 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 100.0 3.5E-32 7.5E-37 264.1 15.8 295 3-330 194-528 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 1.1E-21 2.4E-26 190.5 13.5 271 4-302 98-387 (691)
5 PF00852 Glyco_transf_10: Glyc 97.6 0.0002 4.4E-09 69.6 7.7 142 138-286 138-296 (349)
6 cd03801 GT1_YqgM_like This fam 97.4 0.002 4.4E-08 59.6 11.7 95 210-307 266-363 (374)
7 PF00534 Glycos_transf_1: Glyc 97.3 0.00098 2.1E-08 56.9 7.4 95 200-298 74-170 (172)
8 cd03820 GT1_amsD_like This fam 97.1 0.0053 1.1E-07 56.7 11.2 95 211-307 244-340 (348)
9 PLN02871 UDP-sulfoquinovose:DA 97.0 0.01 2.2E-07 59.6 12.4 95 211-308 323-422 (465)
10 cd03814 GT1_like_2 This family 96.9 0.0028 6.2E-08 59.4 7.3 94 211-307 258-353 (364)
11 cd03794 GT1_wbuB_like This fam 96.8 0.013 2.7E-07 55.0 10.9 94 211-307 286-387 (394)
12 cd03822 GT1_ecORF704_like This 96.7 0.0099 2.2E-07 55.9 9.6 93 211-307 259-355 (366)
13 cd03819 GT1_WavL_like This fam 96.7 0.019 4.1E-07 54.3 11.3 95 210-307 254-353 (355)
14 cd03821 GT1_Bme6_like This fam 96.6 0.015 3.3E-07 54.3 10.2 92 211-307 273-367 (375)
15 cd03818 GT1_ExpC_like This fam 96.5 0.025 5.4E-07 55.3 11.3 117 187-307 267-388 (396)
16 TIGR03088 stp2 sugar transfera 96.5 0.026 5.7E-07 54.3 11.2 94 211-307 264-360 (374)
17 cd03809 GT1_mtfB_like This fam 96.5 0.025 5.5E-07 53.1 10.8 92 211-307 264-357 (365)
18 cd03808 GT1_cap1E_like This fa 96.5 0.034 7.4E-07 51.4 11.4 94 211-307 255-351 (359)
19 TIGR03449 mycothiol_MshA UDP-N 96.5 0.029 6.4E-07 54.7 11.3 94 211-307 294-389 (405)
20 cd05844 GT1_like_7 Glycosyltra 96.4 0.039 8.5E-07 52.5 11.7 94 211-307 256-358 (367)
21 PRK15427 colanic acid biosynth 96.2 0.047 1E-06 54.0 11.0 94 211-307 290-393 (406)
22 cd04962 GT1_like_5 This family 96.1 0.021 4.5E-07 54.5 7.9 94 211-307 262-358 (371)
23 cd03823 GT1_ExpE7_like This fa 96.0 0.041 8.8E-07 51.3 9.4 87 211-300 254-343 (359)
24 cd03799 GT1_amsK_like This is 96.0 0.07 1.5E-06 50.2 10.8 94 211-307 247-349 (355)
25 cd03811 GT1_WabH_like This fam 96.0 0.13 2.8E-06 47.2 12.4 90 212-304 256-351 (353)
26 PRK15484 lipopolysaccharide 1, 95.9 0.077 1.7E-06 51.9 10.9 94 211-307 268-365 (380)
27 cd03800 GT1_Sucrose_synthase T 95.9 0.019 4.2E-07 55.1 6.5 93 212-307 295-390 (398)
28 cd03825 GT1_wcfI_like This fam 95.8 0.072 1.6E-06 50.3 10.4 93 211-306 256-351 (365)
29 cd03807 GT1_WbnK_like This fam 95.8 0.093 2E-06 48.7 10.8 92 211-307 260-354 (365)
30 cd04951 GT1_WbdM_like This fam 95.7 0.099 2.1E-06 49.3 10.8 92 211-307 254-348 (360)
31 PRK10307 putative glycosyl tra 95.7 0.049 1.1E-06 53.4 9.0 94 211-307 295-395 (412)
32 TIGR02149 glgA_Coryne glycogen 95.7 0.056 1.2E-06 52.1 9.1 94 211-307 272-374 (388)
33 cd03817 GT1_UGDG_like This fam 95.7 0.15 3.3E-06 47.5 11.8 91 211-305 270-362 (374)
34 PRK09814 beta-1,6-galactofuran 95.7 0.017 3.6E-07 55.5 5.3 89 211-305 218-317 (333)
35 cd03795 GT1_like_4 This family 95.6 0.11 2.3E-06 48.9 10.6 94 211-307 255-354 (357)
36 cd03806 GT1_ALG11_like This fa 95.6 0.14 3.1E-06 50.8 11.7 103 200-307 306-414 (419)
37 cd03804 GT1_wbaZ_like This fam 95.5 0.056 1.2E-06 51.5 8.3 71 211-285 253-323 (351)
38 TIGR02095 glgA glycogen/starch 95.5 0.087 1.9E-06 53.0 10.0 91 212-307 358-460 (473)
39 PRK00654 glgA glycogen synthas 95.4 0.21 4.5E-06 50.3 12.5 90 213-307 350-450 (466)
40 cd03798 GT1_wlbH_like This fam 95.2 0.028 6.1E-07 52.2 4.8 94 211-307 270-364 (377)
41 PRK14098 glycogen synthase; Pr 95.0 0.18 4E-06 51.3 10.4 91 212-307 374-473 (489)
42 KOG2619 Fucosyltransferase [Ca 95.0 0.13 2.8E-06 50.2 8.8 146 138-288 159-319 (372)
43 cd03805 GT1_ALG2_like This fam 94.9 0.25 5.5E-06 47.6 10.9 103 200-307 281-386 (392)
44 cd03816 GT1_ALG1_like This fam 94.8 0.19 4.1E-06 49.7 10.0 121 174-301 270-399 (415)
45 cd04949 GT1_gtfA_like This fam 94.8 0.24 5.2E-06 47.5 10.4 94 211-307 270-366 (372)
46 PF13524 Glyco_trans_1_2: Glyc 94.8 0.063 1.4E-06 41.2 5.1 81 223-307 2-84 (92)
47 PRK14099 glycogen synthase; Pr 94.7 0.29 6.4E-06 49.7 11.1 92 212-308 361-467 (485)
48 cd03791 GT1_Glycogen_synthase_ 94.7 0.19 4.2E-06 50.3 9.7 91 212-307 363-464 (476)
49 cd04955 GT1_like_6 This family 94.3 0.42 9.1E-06 45.1 10.6 91 211-307 259-352 (363)
50 cd03792 GT1_Trehalose_phosphor 94.0 0.7 1.5E-05 44.5 11.6 93 210-307 264-359 (372)
51 cd03796 GT1_PIG-A_like This fa 93.7 0.34 7.3E-06 47.4 8.8 93 211-308 261-356 (398)
52 PRK09922 UDP-D-galactose:(gluc 93.7 0.3 6.4E-06 47.1 8.3 87 212-300 250-340 (359)
53 cd03802 GT1_AviGT4_like This f 93.6 0.15 3.4E-06 47.6 6.1 70 211-285 235-305 (335)
54 cd03813 GT1_like_3 This family 93.5 0.62 1.3E-05 47.0 10.6 95 210-307 361-464 (475)
55 PF13692 Glyco_trans_1_4: Glyc 93.4 0.059 1.3E-06 43.9 2.5 77 200-284 54-131 (135)
56 TIGR02472 sucr_P_syn_N sucrose 93.2 0.2 4.3E-06 50.0 6.5 92 213-307 330-428 (439)
57 TIGR03087 stp1 sugar transfera 93.1 0.35 7.6E-06 47.2 7.9 90 212-307 290-384 (397)
58 PLN02949 transferase, transfer 92.4 0.62 1.3E-05 47.1 8.7 93 211-307 346-444 (463)
59 cd03812 GT1_CapH_like This fam 92.4 0.85 1.8E-05 42.9 9.3 72 210-285 257-328 (358)
60 cd04946 GT1_AmsK_like This fam 92.1 1.5 3.3E-05 43.2 11.0 93 212-307 301-399 (407)
61 PHA01633 putative glycosyl tra 91.8 0.36 7.7E-06 46.8 6.0 94 211-307 215-327 (335)
62 PHA01630 putative group 1 glyc 91.4 0.47 1E-05 45.7 6.4 94 211-307 201-318 (331)
63 PRK15490 Vi polysaccharide bio 90.8 1.7 3.8E-05 44.9 10.0 94 211-307 464-563 (578)
64 TIGR02468 sucrsPsyn_pln sucros 88.2 1.2 2.6E-05 49.2 6.9 92 213-307 561-658 (1050)
65 cd03793 GT1_Glycogen_synthase_ 88.1 0.99 2.2E-05 46.8 5.9 97 211-308 466-575 (590)
66 TIGR02918 accessory Sec system 87.7 2 4.4E-05 43.8 8.0 93 212-307 385-487 (500)
67 PF00919 UPF0004: Uncharacteri 86.8 0.83 1.8E-05 36.1 3.6 41 6-57 1-42 (98)
68 KOG1387 Glycosyltransferase [C 86.1 7.4 0.00016 37.9 10.1 128 173-304 305-443 (465)
69 cd04950 GT1_like_1 Glycosyltra 85.9 1.2 2.6E-05 43.3 4.9 67 211-284 265-336 (373)
70 cd01635 Glycosyltransferase_GT 85.8 4.2 9E-05 34.9 8.0 78 173-252 135-213 (229)
71 TIGR00236 wecB UDP-N-acetylglu 85.7 10 0.00022 36.5 11.3 95 211-324 266-362 (365)
72 PLN02939 transferase, transfer 85.2 2.5 5.4E-05 46.3 7.3 90 214-308 851-955 (977)
73 PRK13609 diacylglycerol glucos 85.1 9.9 0.00021 36.7 11.0 81 212-301 266-353 (380)
74 smart00672 CAP10 Putative lipo 84.8 11 0.00024 35.0 10.6 132 168-302 79-230 (256)
75 PRK13608 diacylglycerol glucos 83.5 5.4 0.00012 39.1 8.4 84 212-304 266-356 (391)
76 TIGR01133 murG undecaprenyldip 82.1 2.7 5.8E-05 39.8 5.5 83 212-299 243-334 (348)
77 PLN02605 monogalactosyldiacylg 81.8 15 0.00033 35.7 10.8 78 212-299 275-361 (382)
78 PLN00142 sucrose synthase 81.6 5.5 0.00012 43.1 8.0 91 215-308 661-759 (815)
79 PLN02316 synthase/transferase 80.1 13 0.00028 41.4 10.4 91 215-308 915-1022(1036)
80 PRK10125 putative glycosyl tra 79.8 7.7 0.00017 38.4 8.0 67 211-281 298-364 (405)
81 PLN02275 transferase, transfer 78.3 10 0.00022 36.8 8.2 103 173-282 261-367 (371)
82 PF05686 Glyco_transf_90: Glyc 78.1 12 0.00025 37.2 8.7 129 170-300 155-297 (395)
83 PRK15179 Vi polysaccharide bio 78.0 16 0.00034 39.0 10.1 91 212-307 584-681 (694)
84 cd03788 GT1_TPS Trehalose-6-Ph 77.4 4.9 0.00011 40.5 5.9 90 210-304 351-446 (460)
85 PRK05749 3-deoxy-D-manno-octul 76.7 6.1 0.00013 38.9 6.3 101 212-324 312-418 (425)
86 PRK00726 murG undecaprenyldiph 71.0 6 0.00013 37.8 4.5 83 212-300 245-338 (357)
87 TIGR02470 sucr_synth sucrose s 70.4 11 0.00024 40.7 6.7 85 221-308 645-736 (784)
88 cd03785 GT1_MurG MurG is an N- 69.9 15 0.00032 34.7 6.9 84 211-300 244-338 (350)
89 TIGR02400 trehalose_OtsA alpha 68.6 23 0.00049 35.8 8.2 85 210-300 346-437 (456)
90 TIGR03590 PseG pseudaminic aci 63.8 19 0.0004 33.7 6.2 34 211-250 233-266 (279)
91 PLN02846 digalactosyldiacylgly 63.5 60 0.0013 33.0 10.1 38 214-252 295-332 (462)
92 COG0438 RfaG Glycosyltransfera 62.5 15 0.00032 32.9 5.2 94 211-307 268-364 (381)
93 PRK14333 (dimethylallyl)adenos 59.3 11 0.00025 37.8 4.1 41 6-57 8-49 (448)
94 PRK00025 lpxB lipid-A-disaccha 58.4 14 0.00031 35.4 4.5 86 212-304 254-359 (380)
95 PRK14338 (dimethylallyl)adenos 51.5 19 0.00042 36.3 4.2 34 21-57 29-63 (459)
96 PRK14335 (dimethylallyl)adenos 50.2 21 0.00046 36.0 4.3 41 6-57 2-43 (455)
97 PRK14340 (dimethylallyl)adenos 49.5 23 0.0005 35.6 4.5 41 6-57 8-49 (445)
98 PRK14334 (dimethylallyl)adenos 49.1 22 0.00048 35.6 4.3 41 6-57 2-43 (440)
99 PRK14337 (dimethylallyl)adenos 49.0 25 0.00054 35.3 4.6 41 6-57 5-45 (446)
100 PRK14328 (dimethylallyl)adenos 48.7 22 0.00047 35.6 4.1 42 6-58 3-45 (439)
101 PRK14862 rimO ribosomal protei 48.3 27 0.00058 35.1 4.7 47 1-58 4-51 (440)
102 PRK14331 (dimethylallyl)adenos 47.4 25 0.00055 35.2 4.4 41 6-57 2-43 (437)
103 PRK14336 (dimethylallyl)adenos 46.8 25 0.00054 35.1 4.2 41 6-57 3-44 (418)
104 TIGR01578 MiaB-like-B MiaB-lik 45.0 25 0.00054 35.1 3.8 42 6-58 1-43 (420)
105 PLN03063 alpha,alpha-trehalose 44.9 97 0.0021 33.7 8.6 85 211-300 367-458 (797)
106 PRK14325 (dimethylallyl)adenos 44.9 30 0.00066 34.6 4.5 42 6-58 5-47 (444)
107 PLN02501 digalactosyldiacylgly 44.3 66 0.0014 34.6 6.9 38 214-252 613-650 (794)
108 PRK14327 (dimethylallyl)adenos 44.0 34 0.00075 35.1 4.8 34 21-57 75-109 (509)
109 TIGR00089 RNA modification enz 42.6 29 0.00062 34.6 3.9 42 6-58 1-43 (429)
110 COG0621 MiaB 2-methylthioadeni 42.5 32 0.00069 34.6 4.1 41 6-57 4-46 (437)
111 PRK14329 (dimethylallyl)adenos 42.1 33 0.00071 34.7 4.3 42 6-58 25-67 (467)
112 PRK14332 (dimethylallyl)adenos 39.3 42 0.00091 33.8 4.5 42 5-57 11-53 (449)
113 PRK14326 (dimethylallyl)adenos 39.1 46 0.001 34.1 4.8 42 5-57 14-56 (502)
114 TIGR01574 miaB-methiolase tRNA 37.6 39 0.00085 33.8 4.0 41 6-57 1-43 (438)
115 TIGR01125 MiaB-like tRNA modif 36.6 40 0.00086 33.6 3.8 35 21-58 8-43 (430)
116 PF13528 Glyco_trans_1_3: Glyc 36.1 73 0.0016 29.6 5.4 108 170-286 191-318 (318)
117 KOG3185 Translation initiation 31.1 31 0.00068 30.7 1.8 32 219-250 20-51 (245)
118 PRK14501 putative bifunctional 28.8 1.6E+02 0.0034 31.6 7.0 92 210-306 352-449 (726)
119 PF15582 Imm40: Immunity prote 27.3 79 0.0017 29.6 3.7 22 212-233 261-282 (327)
120 PF07038 DUF1324: Protein of u 25.8 43 0.00093 22.8 1.3 39 218-259 7-46 (59)
121 COG0297 GlgA Glycogen synthase 25.7 1.9E+02 0.0042 29.6 6.6 40 212-251 361-400 (487)
122 PRK14330 (dimethylallyl)adenos 25.3 87 0.0019 31.3 4.1 41 6-57 2-43 (434)
123 cd02133 PA_C5a_like PA_C5a_lik 24.4 1.5E+02 0.0033 24.5 4.8 41 213-253 41-81 (143)
124 PF09851 SHOCT: Short C-termin 24.3 1E+02 0.0022 18.8 2.7 26 273-298 3-30 (31)
125 PF10417 1-cysPrx_C: C-termina 23.1 54 0.0012 21.3 1.4 16 138-153 12-27 (40)
126 COG2355 Zn-dependent dipeptida 23.0 29 0.00064 33.3 0.2 74 227-300 145-218 (313)
127 cd00538 PA PA: Protease-associ 20.0 1.9E+02 0.004 22.7 4.4 35 218-252 45-79 (126)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=2.1e-60 Score=474.50 Aligned_cols=329 Identities=42% Similarity=0.703 Sum_probs=270.1
Q ss_pred CCCCcEEEEecCCCCCCCCCC--CCCCccchHHHHHHHHhcCCCceecCCcCCceEEEEcccccchh-hhccCCCchhch
Q 038832 1 MEKRFRVWAYKEGEQPLFHRG--PMNDIYSIEGQFIDELESDKSPFAASHPDDAVAYFIPVSIVNII-RYVYRPYTDYSR 77 (337)
Q Consensus 1 m~~~lkIYvY~~~~~~~~~~~--~~~~~y~~E~~~~~~l~~~~S~~~T~dPeeAdlF~vP~~~~~~~-~~~~~~~~~~~~ 77 (337)
|++.+|+|+|.++.++.+|.+ +++++|++|.+||.+++...+++||.||+|||+||||||.++.. +..+.+... ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~-~~ 189 (464)
T KOG1021|consen 111 NEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDER-VN 189 (464)
T ss_pred hcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCcc-cc
Confidence 678899999999977777766 68999999999999997333899999999999999999999865 554555322 22
Q ss_pred HHHHHHHHHHHHHHhccCCccccCCCCCeEEEeCCCCcccccccChhhhhhhhhhhhc-CCCCCCccCC-CceeecCccc
Q 038832 78 KRLQNIVKDYIDLISSRYPYWNRSNGADHFFVSCHDWAPEVSAAHPTFYKHFIRVLCN-ANSSEGFHPV-KDVSMPEIYL 155 (337)
Q Consensus 78 ~~~~~~~~~~l~~i~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~~-~~~~~~frp~-~DV~iP~~~~ 155 (337)
..+...+.+++..+.+++|||||++|+||||+++|+|+............+.+...++ +..+.++.+. +||+||+...
T Consensus 190 ~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~ 269 (464)
T KOG1021|consen 190 AILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTI 269 (464)
T ss_pred hHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccC
Confidence 3344556677776778999999999999999999999877543222222334444444 3366788888 9999999753
Q ss_pred ccc----ccCCCCCCCCCCCCCeEEEEecC-CCchhhHHHHHHhccCCCCeEEee-------ccCCcccHHHhhccCeEE
Q 038832 156 KRR----ILRPPQLSQASNNRSILAFFAGG-PHGFVRELLFRYWKHKDDDIQVHE-------YLPQTLNYTQLMGQSKFC 223 (337)
Q Consensus 156 ~~~----~~~~~~~~~~~~~R~~l~~F~G~-~~~~~R~~L~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~S~Fc 223 (337)
..+ +. +.....+...|++|++|+|+ .+|.+|..|+++|++ +++..... .|.+...|.+.|++|+||
T Consensus 270 ~~~~~~~~~-~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FC 347 (464)
T KOG1021|consen 270 PHPLSPPEN-SWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKK-DPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFC 347 (464)
T ss_pred cCccCcccc-ccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhc-CcCccccccCCCCccccCCcchHHHHhhcCeEE
Confidence 321 12 23344556789999999999 899999999999988 33322111 234457899999999999
Q ss_pred EeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhH-HHHHcCCCHHHHHHHHHHHHH-hh
Q 038832 224 LCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEI-KKILQGISVEEYLEKQKRVVQ-VQ 301 (337)
Q Consensus 224 l~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~-~~ 301 (337)
|||+|++++|.|+||||.+|||||||+|.+.+||++++||++|||+|++++++++ .++|.+++.+++.+||+++.+ +.
T Consensus 348 L~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~ 427 (464)
T KOG1021|consen 348 LCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVP 427 (464)
T ss_pred ECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999995 89
Q ss_pred hhceecC--CCCCCCHHHHHHHHHHHHHhcccc
Q 038832 302 RHFLMNR--PAKPFDLMHMVMHSVWLRRLNIRL 332 (337)
Q Consensus 302 ~~f~~~~--~~~~~daf~~~l~~l~~r~~~~~~ 332 (337)
++|.++. +.+.+||||+++.++|.|+++.+.
T Consensus 428 r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~~ 460 (464)
T KOG1021|consen 428 RHFLKKPPGPPKRGDAFHMILHSLWRRLHKLRS 460 (464)
T ss_pred hhEEeCCCCCCCcchhHHHHHhhhhhccccccc
Confidence 9999998 888999999999999999988773
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=5e-58 Score=432.70 Aligned_cols=277 Identities=34% Similarity=0.582 Sum_probs=216.0
Q ss_pred CCCcEEEEecCCCC---CC-------CCCCCCCCccchHHHHHHHHhcCCCceecCCcCCceEEEEcccccchhh-hccC
Q 038832 2 EKRFRVWAYKEGEQ---PL-------FHRGPMNDIYSIEGQFIDELESDKSPFAASHPDDAVAYFIPVSIVNIIR-YVYR 70 (337)
Q Consensus 2 ~~~lkIYvY~~~~~---~~-------~~~~~~~~~y~~E~~~~~~l~~~~S~~~T~dPeeAdlF~vP~~~~~~~~-~~~~ 70 (337)
.++||||||++|.+ .+ ......+.+|++|.+|++.|++ |+++|.||+|||+||||+++++... ..+.
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~--s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLN--SPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHh--CCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 46899999999832 11 1123367899999999999999 9999999999999999999998631 1111
Q ss_pred CCchhchHHHHHHHHHHHHHHhccCCccccCCCCCeEEEeCCCCcccccccChhhhhhhhhhhh-cCC-CCCCccCCCce
Q 038832 71 PYTDYSRKRLQNIVKDYIDLISSRYPYWNRSNGADHFFVSCHDWAPEVSAAHPTFYKHFIRVLC-NAN-SSEGFHPVKDV 148 (337)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~i~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~-~~~-~~~~frp~~DV 148 (337)
++. ......+..++.++.+++|||||++|+||||+++|+||.+.....+.+..+.+.+++ .++ ...+|+|++||
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 155 (302)
T PF03016_consen 80 PNS----GADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDI 155 (302)
T ss_pred ccc----hhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCe
Confidence 211 122234566677777899999999999999999999887776555555556655553 222 56789999999
Q ss_pred eecCcccccc-ccCCCCCCCCCCCCCeEEEEecCCC-------chhhHHHHHHhccCCCCeE---EeeccCCcccHHHhh
Q 038832 149 SMPEIYLKRR-ILRPPQLSQASNNRSILAFFAGGPH-------GFVRELLFRYWKHKDDDIQ---VHEYLPQTLNYTQLM 217 (337)
Q Consensus 149 ~iP~~~~~~~-~~~~~~~~~~~~~R~~l~~F~G~~~-------~~~R~~L~~~~~~~~~~v~---~~~~~~~~~~~~~~~ 217 (337)
++|++..... .........+..+|++|++|+|+.. +.+|..|++.|++.+ +.. ..+.+.+..+|.+.|
T Consensus 156 ~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 234 (302)
T PF03016_consen 156 VIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDP-DFRCSDGSETCPSPSEYMELL 234 (302)
T ss_pred eccccccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCC-cceeeecccccccchHHHHhc
Confidence 9999854322 1111112446678999999999864 368999999997643 322 222334556799999
Q ss_pred ccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC
Q 038832 218 GQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 218 ~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
++|+|||||+|+++++.||+|||.+|||||||+|++.|||+++|||++|+|+|+++++++|+++|++|
T Consensus 235 ~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 235 RNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred ccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.98 E-value=3.5e-32 Score=264.13 Aligned_cols=295 Identities=19% Similarity=0.287 Sum_probs=203.0
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccchHHHHHHHHhc--CCCceecCCcCCceEEEEcccccchhhhccCCCchhchHHH
Q 038832 3 KRFRVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELES--DKSPFAASHPDDAVAYFIPVSIVNIIRYVYRPYTDYSRKRL 80 (337)
Q Consensus 3 ~~lkIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~--~~S~~~T~dPeeAdlF~vP~~~~~~~~~~~~~~~~~~~~~~ 80 (337)
.+|.|||||.++ ....++...++.+.+.. +...|.|+||+.||++.+-+.. ...|... ...++
T Consensus 194 SgfPVYvyd~D~--------~~~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge------~q~P~~l-~p~el 258 (907)
T KOG2264|consen 194 SGFPVYVYDSDI--------ITSGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGE------IQSPVVL-TPAEL 258 (907)
T ss_pred CCceeEEeccce--------eecccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEecc------ccCCCcC-ChHhh
Confidence 579999999643 22244445555555554 4488999999999999986542 2334321 23222
Q ss_pred HHHHHHHHHHHhccCCccccCCCCCeEEEeCCCCcccccccChhhhhhhhhhhhcCC--CCCCccCCCceeecCccccc-
Q 038832 81 QNIVKDYIDLISSRYPYWNRSNGADHFFVSCHDWAPEVSAAHPTFYKHFIRVLCNAN--SSEGFHPVKDVSMPEIYLKR- 157 (337)
Q Consensus 81 ~~~~~~~l~~i~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~~~~--~~~~frp~~DV~iP~~~~~~- 157 (337)
++ .-++||| |++|+||++++.+- ...+.++..-.++++..+.++ ++..||||+|.++|+.....
T Consensus 259 --------ek-lyslp~w-~~dg~Nhvl~Nl~r---~s~~~n~lyn~~t~raivvQssf~~~q~RpgfDl~V~pv~h~~~ 325 (907)
T KOG2264|consen 259 --------EK-LYSLPHW-RTDGFNHVLFNLGR---PSDTQNLLYNFQTGRAIVVQSSFYTVQIRPGFDLPVDPVNHIAV 325 (907)
T ss_pred --------hh-hhcCccc-cCCCcceEEEEccC---ccccccceeEeccCceEEEeecceeeeeccCCCcccCccccccc
Confidence 22 2478999 88999999998752 221222211123444444333 56689999999999875432
Q ss_pred cccCCCCCCCCCCCCCeEEEEecCCCc------hhhHHHHHHhccC------CC-C--eEEe------ec--------cC
Q 038832 158 RILRPPQLSQASNNRSILAFFAGGPHG------FVRELLFRYWKHK------DD-D--IQVH------EY--------LP 208 (337)
Q Consensus 158 ~~~~~~~~~~~~~~R~~l~~F~G~~~~------~~R~~L~~~~~~~------~~-~--v~~~------~~--------~~ 208 (337)
+.........-+..|++|++|+|.+.+ ..+....++..+. |. - |++. +. |.
T Consensus 326 e~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg 405 (907)
T KOG2264|consen 326 EKNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCG 405 (907)
T ss_pred CccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhcc
Confidence 222222223446789999999997642 1232222222211 11 1 1221 11 33
Q ss_pred CcccHHHhhccCeEEEe-eCCCCC-----CCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHH
Q 038832 209 QTLNYTQLMGQSKFCLC-PSGYEV-----ASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKIL 282 (337)
Q Consensus 209 ~~~~~~~~~~~S~Fcl~-p~G~~~-----~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L 282 (337)
...+-.++++.|+|||+ |+|++- .-.|++||++.||||||+++...|||+|.|||++.++++|..++.+++.+|
T Consensus 406 ~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HFll 485 (907)
T KOG2264|consen 406 ERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLL 485 (907)
T ss_pred chHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHHHH
Confidence 44578899999999995 788752 347999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHHHHHHhcc
Q 038832 283 QGISVEEYLEKQKRVVQVQRHFLMNRPAKPFDLMHMVMHSVWLRRLNI 330 (337)
Q Consensus 283 ~~i~~~~~~~m~~~~~~~~~~f~~~~~~~~~daf~~~l~~l~~r~~~~ 330 (337)
+++.++|+.+||++++.+|+.+... ....+++++..|+.| +.|
T Consensus 486 rs~~dsDll~mRRqGRl~wEtYls~----~~~~~~tvlA~lR~r-lqI 528 (907)
T KOG2264|consen 486 RSFEDSDLLEMRRQGRLFWETYLSD----RHLLARTVLAALRYR-LQI 528 (907)
T ss_pred HhcchhhHHHHHhhhhhhHHHHhhH----HHHHHHHHHHHHHHh-hCC
Confidence 9999999999999999999987654 235678888888874 444
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.87 E-value=1.1e-21 Score=190.52 Aligned_cols=271 Identities=17% Similarity=0.180 Sum_probs=181.8
Q ss_pred CcEEEEecCCCCCCCCCC--CCCCccchHHHHHHHHhc-CCCceecCCcCCceEEEEcccccchhhhccCCCchhchHHH
Q 038832 4 RFRVWAYKEGEQPLFHRG--PMNDIYSIEGQFIDELES-DKSPFAASHPDDAVAYFIPVSIVNIIRYVYRPYTDYSRKRL 80 (337)
Q Consensus 4 ~lkIYvY~~~~~~~~~~~--~~~~~y~~E~~~~~~l~~-~~S~~~T~dPeeAdlF~vP~~~~~~~~~~~~~~~~~~~~~~ 80 (337)
..|+|||.+++ +..+- ......+. ...+.++. ..|.|+|.|+++||+|.......+ ++ |. +. ++
T Consensus 98 ~~KvyIy~l~~--~vd~~s~~~~~T~s~--ey~~lleA~~~S~yyt~n~N~aclf~Ps~d~ln--Qn---~l---~~-kl 164 (691)
T KOG1022|consen 98 ETKVYIYMLGD--IVDAKSIDKGATWSP--EYIALLEAWHLSFYYTFNYNGACLFMPSSDELN--QN---PL---SW-KL 164 (691)
T ss_pred ccceeEEehhh--hhhhhcccccccccH--HHHHHHHHHHhccceecCCCceEEEecchhhhc--cC---cc---hH-HH
Confidence 57999999863 22111 12233333 34444443 339999999999999976544332 21 21 11 11
Q ss_pred HHHHHHHHHHHhccCCccccCCCCCeEEEeCCCCcccccccChhhhhhhhhh-hhcCC-CCCCccCCCceeecCcccccc
Q 038832 81 QNIVKDYIDLISSRYPYWNRSNGADHFFVSCHDWAPEVSAAHPTFYKHFIRV-LCNAN-SSEGFHPVKDVSMPEIYLKRR 158 (337)
Q Consensus 81 ~~~~~~~l~~i~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~-~~~~~-~~~~frp~~DV~iP~~~~~~~ 158 (337)
. +.+.++.-.|+| |.||..+++-+-|+- ..+..+..+...+ ...++ .+|.||+|.||.||.+++.
T Consensus 165 ----~---~~ala~l~~wdr--g~nH~~fnmLpGg~p--~yntaldv~~d~a~~~gggf~tW~yr~g~dv~ipv~Sp~-- 231 (691)
T KOG1022|consen 165 ----E---KVALAKLLVWDR--GVNHEGFNMLPGGDP--TYNTALDVGQDEAWYSGGGFGTWKYRKGNDVYIPVRSPG-- 231 (691)
T ss_pred ----H---HHHHhcccchhc--ccceeeEeeccCCCC--CccccccCCcceeEEecCCcCcccccCCCcccccccccc--
Confidence 1 112346679998 999999987653321 1111111111111 22223 7889999999999998644
Q ss_pred ccCCCCCCCCCCCCCeEEEE-ecCCCchhhHHHHHHhccCCCCeEEe-----------eccCC--cccHHHhhccCeEEE
Q 038832 159 ILRPPQLSQASNNRSILAFF-AGGPHGFVRELLFRYWKHKDDDIQVH-----------EYLPQ--TLNYTQLMGQSKFCL 224 (337)
Q Consensus 159 ~~~~~~~~~~~~~R~~l~~F-~G~~~~~~R~~L~~~~~~~~~~v~~~-----------~~~~~--~~~~~~~~~~S~Fcl 224 (337)
.++.+ ...+..|.+++.- +-+.+..+|..|.+.....+..+... ..++. ..+|...+...+||+
T Consensus 232 ~v~~~--~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~ 309 (691)
T KOG1022|consen 232 NVGRA--FLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCD 309 (691)
T ss_pred ccCcc--ccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeeeEe
Confidence 22221 1223456655443 33445678888877765443322221 11222 247999999999999
Q ss_pred eeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCCHHHHHHHHHHHHHhhh
Q 038832 225 CPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGISVEEYLEKQKRVVQVQR 302 (337)
Q Consensus 225 ~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~~ 302 (337)
.-||.+.+..-+.+-+.+||+|||..|.+.+||.+++||...||+++|..+.++.+.|++++...+-+||.+....+-
T Consensus 310 ~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~~~rl 387 (691)
T KOG1022|consen 310 GDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRIGSRL 387 (691)
T ss_pred ccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhhhhhH
Confidence 999999899999999999999999999999999999999999999999999999999999999999999877665443
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=97.57 E-value=0.0002 Score=69.59 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=68.5
Q ss_pred CCCCccCCCceeecCccccccccCCC--CCCCCCCCCCeE-EEEecCCCc-hhhHHHHHHhccCCCCeEEeeccC-C---
Q 038832 138 SSEGFHPVKDVSMPEIYLKRRILRPP--QLSQASNNRSIL-AFFAGGPHG-FVRELLFRYWKHKDDDIQVHEYLP-Q--- 209 (337)
Q Consensus 138 ~~~~frp~~DV~iP~~~~~~~~~~~~--~~~~~~~~R~~l-~~F~G~~~~-~~R~~L~~~~~~~~~~v~~~~~~~-~--- 209 (337)
.+-+||...||.+|+........... ........++.+ ++++..+.+ ..|..+++.+.+. -.|.+++.|. .
T Consensus 138 ~TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~-~~vd~yG~c~~~~~~ 216 (349)
T PF00852_consen 138 WTMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKY-IPVDSYGKCGNNNPC 216 (349)
T ss_dssp -----------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTT-S-EEE-SSTT--SSS
T ss_pred cccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhh-cCeEccCCCCCCCCc
Confidence 45579999999999754221111000 011122344444 445665543 3488888888765 4577777762 1
Q ss_pred -cccHHHhhccCeEEEeeCCC---CCCCCcHHHHHhhCceeEEee--Cc-c--cCCCCCCCCCCceEEEecCCChhhHHH
Q 038832 210 -TLNYTQLMGQSKFCLCPSGY---EVASPRLVESIYSACVPVIIS--DH-Y--VLPFSDVLDWRQFSVHIPVEKIPEIKK 280 (337)
Q Consensus 210 -~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVii~--d~-~--~lPf~~~idw~~~sv~v~~~~~~~l~~ 280 (337)
.....+.+++-+|.|+.... +--+-.|++|+.+|||||+.+ .. + .+|=...|+.++|. .+.+|.+
T Consensus 217 ~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~ 290 (349)
T PF00852_consen 217 PRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELAD 290 (349)
T ss_dssp --S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHH
T ss_pred ccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHH
Confidence 23588999999999997643 455789999999999999999 43 2 36657778777764 5667777
Q ss_pred HHcCCC
Q 038832 281 ILQGIS 286 (337)
Q Consensus 281 ~L~~i~ 286 (337)
.|+.+.
T Consensus 291 yl~~l~ 296 (349)
T PF00852_consen 291 YLKYLD 296 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.39 E-value=0.002 Score=59.59 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=72.4
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CH
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SV 287 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 287 (337)
..+..+.|+.|.+.++|.-....+..++||+++|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .+
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 35788999999999999877667788999999998 6777665 3355566656778888888887777777663 45
Q ss_pred HHHHHHHHHHH-Hhhhhceec
Q 038832 288 EEYLEKQKRVV-QVQRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~-~~~~~f~~~ 307 (337)
+...+|.++.+ .+.+.+.|.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 343 ELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 66788888877 566777664
No 7
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.26 E-value=0.00098 Score=56.94 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=61.9
Q ss_pred CeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHH
Q 038832 200 DIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIK 279 (337)
Q Consensus 200 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~ 279 (337)
.+.+.+... ..+..+.++.|.+.++|......+..+.|||.+|| |||+++. -.+.+++.=..-.+.++..++.++.
T Consensus 74 ~i~~~~~~~-~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 74 NIIFLGYVP-DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELA 149 (172)
T ss_dssp TEEEEESHS-HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHH
T ss_pred ccccccccc-ccccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHH
Confidence 455555443 45789999999999999998888999999999999 6666663 1222333222245667777888887
Q ss_pred HHHcCCCH--HHHHHHHHHHH
Q 038832 280 KILQGISV--EEYLEKQKRVV 298 (337)
Q Consensus 280 ~~L~~i~~--~~~~~m~~~~~ 298 (337)
+.+..+-. +...+|.++.+
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhc
Confidence 77777643 33555555443
No 8
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.11 E-value=0.0053 Score=56.66 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+++.+++.|.........++|||++||. ||.++....+ +++++-....+.++..++.++.+.+..+ +++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 56788999999999998766667889999999995 5555532222 2334444567778888887777766665 577
Q ss_pred HHHHHHHHHHHhhhhceec
Q 038832 289 EYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~~~ 307 (337)
...+|.++.+...+.|.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 322 LRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 7888998888888888774
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.95 E-value=0.01 Score=59.60 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCC---CceEEEecCCChhhHHHHHcCC--
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDW---RQFSVHIPVEKIPEIKKILQGI-- 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw---~~~sv~v~~~~~~~l~~~L~~i-- 285 (337)
.+..+.|+.+..++.|......+.-++|||++| +|||.++.- ...++++= .+..+.++..|..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 468889999999999988777778899999999 799988743 23344432 6777888888888776666554
Q ss_pred CHHHHHHHHHHHHHhhhhceecC
Q 038832 286 SVEEYLEKQKRVVQVQRHFLMNR 308 (337)
Q Consensus 286 ~~~~~~~m~~~~~~~~~~f~~~~ 308 (337)
+++...+|.++.++..+.|.|..
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~ 422 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRA 422 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHH
Confidence 46778889988888777888864
No 10
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.88 E-value=0.0028 Score=59.43 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=69.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.|..+++|.+.......++|||++|| |||.++.-- ..+++.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4577899999999999887777888999999999 788777432 33444334566777777776665555553 467
Q ss_pred HHHHHHHHHHHhhhhceec
Q 038832 289 EYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~~~ 307 (337)
...+|.++.....+.+.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 335 LRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHhhcCHH
Confidence 7888888888877777664
No 11
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.79 E-value=0.013 Score=54.99 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=67.0
Q ss_pred ccHHHhhccCeEEEeeCCCCCC-----CCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVA-----SPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~-----s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
.+..+.|+.+.++++|...+.. ...++||+++|| |||.++.-.. .+.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGES--AELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCc--hhhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4678899999999999876543 455899999997 7887765322 2222222566677777888777777765
Q ss_pred --CHHHHHHHHHHHHHhhh-hceec
Q 038832 286 --SVEEYLEKQKRVVQVQR-HFLMN 307 (337)
Q Consensus 286 --~~~~~~~m~~~~~~~~~-~f~~~ 307 (337)
++++..+|.++.+...+ +|.|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHH
Confidence 67788888888876544 77764
No 12
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.71 E-value=0.0099 Score=55.87 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=68.6
Q ss_pred ccHHHhhccCeEEEeeCCCC--CCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCC--
Q 038832 211 LNYTQLMGQSKFCLCPSGYE--VASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGIS-- 286 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~--~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~-- 286 (337)
.+..+.|+.|.+++.|.... ..+..+.|||++|+ |||.++.-- .+.+.+ ..-.+.++..+..++.+.|..+-
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 46788999999999998777 77788999999999 999887422 233333 34456677777777766666543
Q ss_pred HHHHHHHHHHHHHhhhhceec
Q 038832 287 VEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 287 ~~~~~~m~~~~~~~~~~f~~~ 307 (337)
++...+|+++.+...+.|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 335 PELAQALRARAREYARAMSWE 355 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHH
Confidence 467888999888877667664
No 13
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.68 E-value=0.019 Score=54.29 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=69.2
Q ss_pred cccHHHhhccCeEEEeeC-CCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHc-C--C
Q 038832 210 TLNYTQLMGQSKFCLCPS-GYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQ-G--I 285 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~-G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~-~--i 285 (337)
..+..+.|+.|..+++|. -......-++|||++|| |||.++. -+..+.+.-..-.+.++..+..++.+.|. . .
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 346888999999999986 33445567999999999 7777763 34455565555677788888888777763 2 2
Q ss_pred CHHHHHHHHHHHHHh-hhhceec
Q 038832 286 SVEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 286 ~~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
++++..+|.++.++. .++|.|.
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 578888898888875 4567653
No 14
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.63 E-value=0.015 Score=54.31 Aligned_cols=92 Identities=11% Similarity=0.217 Sum_probs=61.9
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.++.+.++++|.-....+..++|||++|| |||.++.- ...+.+.- ...+.++.+ ..++.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHH
Confidence 3577889999999999876667788999999997 78877642 22333322 444444443 35554444443 246
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 038832 289 EYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~~ 307 (337)
+..+|.++.++. .+.|.|.
T Consensus 348 ~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 348 RLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 788888888776 7788774
No 15
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.53 E-value=0.025 Score=55.33 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=76.9
Q ss_pred hHHHHHHhcc--CCCCeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCC
Q 038832 187 RELLFRYWKH--KDDDIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWR 264 (337)
Q Consensus 187 R~~L~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~ 264 (337)
++.+.+.+.. ....|.+.+.. ...++.+.|+.|..++.|.-....+.-++|||++|| |||.++. -+..+++.-.
T Consensus 267 ~~~~~~~~~~~~~~~~V~f~G~v-~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~--~g~~e~i~~~ 342 (396)
T cd03818 267 KQHMLDELGGRLDLSRVHFLGRV-PYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDT--APVREVITDG 342 (396)
T ss_pred HHHHHHHhhcccCcceEEEeCCC-CHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCC--CCchhhcccC
Confidence 4444444432 12345554433 234678889999999887655445567999999999 7887764 2455666655
Q ss_pred ceEEEecCCChhhHHHHHcCC--CHHHHHHHHHHHHHh-hhhceec
Q 038832 265 QFSVHIPVEKIPEIKKILQGI--SVEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 265 ~~sv~v~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
.-.+.++..|..++.+.+..+ .++...+|.++.++. .++|.|.
T Consensus 343 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 343 ENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 667788888887766655543 356678888887764 4557764
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.51 E-value=0.026 Score=54.32 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=68.2
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.|..+++|.-......-++|||++|+ |||.+|.- ...+++.-......++..+..++.+.|..+ +++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4678889999999888655556778999999996 99988852 234556555667788888888776666654 355
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 038832 289 EYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~~ 307 (337)
...+|.++.++. .+.|.|.
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~ 360 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSIN 360 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 667777666654 5678774
No 17
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.49 E-value=0.025 Score=53.06 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=67.4
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC-C-CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG-I-SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-i-~~~ 288 (337)
.+..+.++.+.+++.|.-....+.-++|||++|| |||.++.- ...+.+ .+..+.++..+..++.+.|.. + +++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 4677889999999998765556777999999997 77776642 233444 345667777788877777766 3 466
Q ss_pred HHHHHHHHHHHhhhhceec
Q 038832 289 EYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~~~ 307 (337)
...+|.++.+.+.+.|.|.
T Consensus 339 ~~~~~~~~~~~~~~~~sw~ 357 (365)
T cd03809 339 LREELRERGLARAKRFSWE 357 (365)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 7788888888777888775
No 18
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.48 E-value=0.034 Score=51.44 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=66.6
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.++.|.++++|......+..++|||.+|| |||.++.-. ..+.+.=....+.++.++..++.+.+..+ +++
T Consensus 255 ~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 255 DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred ccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 4577889999999999877667788999999996 777776432 23444324456677877887766666653 456
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 038832 289 EYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~~ 307 (337)
...+|.++.++. .++|.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 332 LRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 777877777665 6677553
No 19
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.46 E-value=0.029 Score=54.66 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=67.0
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.+..++.|.=......-+.|||++|| |||.++.-- ..++|.=....+.++..|..++.+.+..+ +++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 4567889999998888655555677999999997 888877422 23445334556677878887765555443 356
Q ss_pred HHHHHHHHHHHhhhhceec
Q 038832 289 EYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~~~ 307 (337)
...+|.++.+...+.|.|.
T Consensus 371 ~~~~~~~~~~~~~~~fsw~ 389 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWA 389 (405)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 6788888888877788775
No 20
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.42 E-value=0.039 Score=52.52 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=66.0
Q ss_pred ccHHHhhccCeEEEeeCCC------CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC
Q 038832 211 LNYTQLMGQSKFCLCPSGY------EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG 284 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 284 (337)
.+..+.++.|..+++|.-. ......++|||++|| |||.++.-. ..+.+.=....+.++..+..++.+.|..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 3577889999998887532 224567999999997 899887633 3344444566778888888877666655
Q ss_pred C--CHHHHHHHHHHHHH-hhhhceec
Q 038832 285 I--SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 285 i--~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
+ +++...+|.++.+. +.++|.|.
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 4 35567788877776 45688774
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.17 E-value=0.047 Score=54.04 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred ccHHHhhccCeEEEeeCCC------CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC
Q 038832 211 LNYTQLMGQSKFCLCPSGY------EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG 284 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 284 (337)
.+..+.++.+..++.|.=. .....-++|||++|| |||.++.-- ..++|.=..-.+.+++.|..++.+.+..
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 4678899999999988521 223456999999996 999887532 2355544556777888898887777765
Q ss_pred C---CHHHHHHHHHHHHH-hhhhceec
Q 038832 285 I---SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 285 i---~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
+ ++++..+|.++.++ +.+.|.|.
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 56778889888875 46678764
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.09 E-value=0.021 Score=54.50 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=69.0
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.|..+++|.-......-+.|||++| +|||.++.- ...+++.-..-...++..+..++.+.+..+ +++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 357888999999999976555677899999999 588888753 234555444455667777887766655543 467
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 038832 289 EYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~~ 307 (337)
.+.+|+++.+.. .++|.|.
T Consensus 339 ~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 339 LWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 788999888876 6778764
No 23
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.02 E-value=0.041 Score=51.33 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=61.1
Q ss_pred ccHHHhhccCeEEEeeCC-CCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CH
Q 038832 211 LNYTQLMGQSKFCLCPSG-YEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 287 (337)
.+..+.++.|..+++|.- .......+.|||++| +|||.++.- ...+.++-....+.++..|..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 467888999999999964 345667899999999 577776631 234456656667888888887766665554 35
Q ss_pred HHHHHHHHHHHHh
Q 038832 288 EEYLEKQKRVVQV 300 (337)
Q Consensus 288 ~~~~~m~~~~~~~ 300 (337)
+...+|+++.+..
T Consensus 331 ~~~~~~~~~~~~~ 343 (359)
T cd03823 331 DLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhHHHh
Confidence 6677776665543
No 24
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=95.97 E-value=0.07 Score=50.17 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=64.0
Q ss_pred ccHHHhhccCeEEEeeCCC------CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC
Q 038832 211 LNYTQLMGQSKFCLCPSGY------EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG 284 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 284 (337)
.+..+.++++.++++|... ......++|||++||-. |.++.- ...+++.=..-...+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pv-i~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV-ISTDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCE-EecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4678889999999998654 44567899999999954 555432 23444443445667777777766666555
Q ss_pred C--CHHHHHHHHHHHHHh-hhhceec
Q 038832 285 I--SVEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 285 i--~~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
+ .+++..+|.++.++. .+.|.|.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 356678888887754 5677664
No 25
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.95 E-value=0.13 Score=47.23 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhH---HHHHcC-CC-
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEI---KKILQG-IS- 286 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l---~~~L~~-i~- 286 (337)
+..+.++.|.++++|.-.......++|||++||. ||.++.- ...+++.=....+.++.++...+ ...+.. ..
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 4668899999999997666667789999999995 5655543 23344544556677788887765 333333 33
Q ss_pred HHHHHHHHH-HHHHhhhhc
Q 038832 287 VEEYLEKQK-RVVQVQRHF 304 (337)
Q Consensus 287 ~~~~~~m~~-~~~~~~~~f 304 (337)
++...+|.. +...+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 333 PELRERLAAAARERVAREY 351 (353)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 445666666 333444444
No 26
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.87 E-value=0.077 Score=51.88 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=62.0
Q ss_pred ccHHHhhccCeEEEeeCCC-CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEE-EecCCChhhHHHHHcC-CCH
Q 038832 211 LNYTQLMGQSKFCLCPSGY-EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSV-HIPVEKIPEIKKILQG-ISV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv-~v~~~~~~~l~~~L~~-i~~ 287 (337)
.+..+.++.|..+++|... .....-++|||++| +|||.++.-- ..+++.=..-.. .++..+..++.+.|.. +++
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3567789999999999753 44567799999999 5899887522 334442223333 4566677766555544 334
Q ss_pred HHHHHHHHHHHH-hhhhceec
Q 038832 288 EEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~~-~~~~f~~~ 307 (337)
.+..+|.++.++ +.++|.|.
T Consensus 345 ~~~~~~~~~ar~~~~~~fsw~ 365 (380)
T PRK15484 345 PELTQIAEQAKDFVFSKYSWE 365 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 455777777775 56788885
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.86 E-value=0.019 Score=55.14 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=67.7
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHHH
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVEE 289 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 289 (337)
+..+.++.|..+++|.-......-++|||++|+ |||.++.- ...+.|.=....+.++..+..++.+.+..+ +++.
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL 371 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 467779999999999776666678999999995 99988742 234445434567778877777766665554 4677
Q ss_pred HHHHHHHHHHhh-hhceec
Q 038832 290 YLEKQKRVVQVQ-RHFLMN 307 (337)
Q Consensus 290 ~~~m~~~~~~~~-~~f~~~ 307 (337)
+.+|.++.++.. +.|.|.
T Consensus 372 ~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 372 RRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 888888887654 788775
No 28
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.85 E-value=0.072 Score=50.30 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=64.5
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.|.+.+.|......+.-+.|||.+|| |||.++. -+..+.+.=.+-.+.++..+..++.+.|..+ .++
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3567889999999999877677788999999999 5666653 2344555434556677777776665555442 355
Q ss_pred HHHHHHHHHHHh-hhhcee
Q 038832 289 EYLEKQKRVVQV-QRHFLM 306 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~ 306 (337)
...+|.++.+.. .+.|.|
T Consensus 333 ~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 333 EREELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHHhcCH
Confidence 677888877764 456655
No 29
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=95.80 E-value=0.093 Score=48.70 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=63.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.|+.+..+++|......+.-+.|||++|| |||.++.-. ..+.+.= ..+.++..+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChH
Confidence 3577889999999999887777888999999997 777776421 2222221 45667777776666555554 245
Q ss_pred HHHHHHHHHHH-hhhhceec
Q 038832 289 EYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~-~~~~f~~~ 307 (337)
...+|.++.+. +.+.|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 335 LRQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 67777777665 45678774
No 30
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.74 E-value=0.099 Score=49.25 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=61.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC---CH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI---SV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i---~~ 287 (337)
.+..+.|+.+...+.|.........++|||++|| |||.+|.- ...+.+. +....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVG--DSGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEec--CCceEeCCCCHHHHHHHHHHHHhCCH
Confidence 3567889999999998876666788999999999 88887742 1233332 134456667777666655554 45
Q ss_pred HHHHHHHHHHHHhhhhceec
Q 038832 288 EEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~~~~~~f~~~ 307 (337)
+....|.+.-..+.+.|.|.
T Consensus 329 ~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 329 EERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 55566665534456777664
No 31
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.74 E-value=0.049 Score=53.44 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=66.8
Q ss_pred ccHHHhhccCeEEEeeCCCCC----CCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC-
Q 038832 211 LNYTQLMGQSKFCLCPSGYEV----ASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI- 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~----~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i- 285 (337)
.+..+.++.|..+++|.-.+. ....++|||++|| |||.++.--....+++. .-.+.++..|+.++.+.|..+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~-PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGR-NVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCC-CEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHH
Confidence 467788999999888754322 2345899999995 88888642222345565 467778888888888877765
Q ss_pred -CHHHHHHHHHHHHHh-hhhceec
Q 038832 286 -SVEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 286 -~~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
+++...+|.++.+.. .++|.|.
T Consensus 372 ~~~~~~~~~~~~a~~~~~~~fs~~ 395 (412)
T PRK10307 372 RQALLRPKLGTVAREYAERTLDKE 395 (412)
T ss_pred hCHHHHHHHHHHHHHHHHHHcCHH
Confidence 356788898888874 5689885
No 32
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.70 E-value=0.056 Score=52.11 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCCh------hhHHHHHcC
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKI------PEIKKILQG 284 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~------~~l~~~L~~ 284 (337)
.+..+.|+.|..+++|.-......-++|||++|| |||.++.-. ..+++.=....+.++..+. ..+.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 4577889999999998765555677899999999 888887422 2344433444566666665 555555554
Q ss_pred C--CHHHHHHHHHHHHH-hhhhceec
Q 038832 285 I--SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 285 i--~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
+ ++++..+|.++.++ +.+.|.|.
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 3 46777888888776 45678774
No 33
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.69 E-value=0.15 Score=47.55 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=59.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.+..+.++.|.+.++|......+..++|||++|+ |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4678889999999999876667788999999987 56665532 23444443345556666553 333333332 245
Q ss_pred HHHHHHHHHHHhhhhce
Q 038832 289 EYLEKQKRVVQVQRHFL 305 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~ 305 (337)
...+|.++.+...+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 346 LRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888887766553
No 34
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.67 E-value=0.017 Score=55.52 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=65.9
Q ss_pred ccHHHhhccCeEEEeeCCCC-----------CCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYE-----------VASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIK 279 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~-----------~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~ 279 (337)
.+..+.++. .|+|++.+++ .....++++|++|+ |||+++.-.+ .++|.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~--~~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAI--ADFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccH--HHHHHhCCceEEeC--CHHHHH
Confidence 345566665 9999987761 22345889999997 9999875332 24454456666666 677899
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhhhce
Q 038832 280 KILQGISVEEYLEKQKRVVQVQRHFL 305 (337)
Q Consensus 280 ~~L~~i~~~~~~~m~~~~~~~~~~f~ 305 (337)
+.|.+++++++.+|+++.+++.+.+.
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKKISKLLR 317 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888763
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.62 E-value=0.11 Score=48.94 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=63.5
Q ss_pred ccHHHhhccCeEEEeeCC--CCCCCCcHHHHHhhCceeEEeeCcccCCCCCCC-CCCceEEEecCCChhhHHHHHcCC--
Q 038832 211 LNYTQLMGQSKFCLCPSG--YEVASPRLVESIYSACVPVIISDHYVLPFSDVL-DWRQFSVHIPVEKIPEIKKILQGI-- 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G--~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~~~sv~v~~~~~~~l~~~L~~i-- 285 (337)
.+..+.++.+..+++|.- .......+.|||.+|| |||.++.-.. .+.+ +.....+.++..+..++.+.+..+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~--~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTG--GSYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCc--hhHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 457788999999998852 2233456999999986 6777663221 1222 235667777888887766666654
Q ss_pred CHHHHHHHHHHHHHh-hhhceec
Q 038832 286 SVEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 286 ~~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
.+++..+|.++.+.. .++|.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 332 DPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred CHHHHHHHHHHHHHHHHHhcchH
Confidence 467788999888875 5667653
No 36
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.59 E-value=0.14 Score=50.79 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=64.8
Q ss_pred CeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCC---CCceEEEecCCChh
Q 038832 200 DIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLD---WRQFSVHIPVEKIP 276 (337)
Q Consensus 200 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~id---w~~~sv~v~~~~~~ 276 (337)
.|.+.+.. ...+..+.|+.|..++.|.-......-+.|||++||.||.-... -|.++++. -.+-.+.+. +..
T Consensus 306 ~V~f~g~v-~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~g--gp~~~iv~~~~~g~~G~l~~--d~~ 380 (419)
T cd03806 306 KVEFVVNA-PFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASG--GPLLDIVVPWDGGPTGFLAS--TAE 380 (419)
T ss_pred eEEEecCC-CHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCC--CCchheeeccCCCCceEEeC--CHH
Confidence 35554432 23567899999999998876666778899999999976654322 25555553 233333332 555
Q ss_pred hHHHHHcC---CCHHHHHHHHHHHHHhhhhceec
Q 038832 277 EIKKILQG---ISVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 277 ~l~~~L~~---i~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
++.+.+.. .+++....|+++.+++.+.|.+.
T Consensus 381 ~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 381 EYAEAIEKILSLSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHH
Confidence 44443333 25566666777777777888663
No 37
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.53 E-value=0.056 Score=51.51 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=49.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
.+..+.++.+..+++|.- ......++|||++|| |||.++.-. ..+++.=.+..+.++..+..++.+.|..+
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 457889999999998865 444566899999998 999887422 23444323557778777777665555543
No 38
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.51 E-value=0.087 Score=52.97 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCC-CCC-----ceEEEecCCChhhHHHHHcCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVL-DWR-----QFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~sv~v~~~~~~~l~~~L~~i 285 (337)
...+.++.|.++++|.-..+...-..|||++||.||+ ++.- ...++| |.+ .-.+.++..+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3567899999999998777777789999999997665 4421 223333 321 556778888877766655442
Q ss_pred ------CHHHHHHHHHHHHHhhhhceec
Q 038832 286 ------SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 286 ------~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.++.+.+|.++.. .+.|.|.
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~ 460 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWD 460 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcH
Confidence 4556667766553 3567775
No 39
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.45 E-value=0.21 Score=50.29 Aligned_cols=90 Identities=11% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCC-CCC-----ceEEEecCCChhhHHHHHcCC-
Q 038832 213 YTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVL-DWR-----QFSVHIPVEKIPEIKKILQGI- 285 (337)
Q Consensus 213 ~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~sv~v~~~~~~~l~~~L~~i- 285 (337)
....++.|.+++.|.=..+...-..|||++||+||+-... -..+.| |.. .-.+.++..+...+.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g---G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG---GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC---CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999977777778899999999988874322 122322 331 446778888887776666543
Q ss_pred ----CHHHHHHHHHHHHHhhhhceec
Q 038832 286 ----SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 286 ----~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.++...+|.++.. .+.|.|.
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~ 450 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWD 450 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChH
Confidence 3445666665553 3567764
No 40
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=95.16 E-value=0.028 Score=52.17 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=62.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCC-HHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGIS-VEE 289 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~-~~~ 289 (337)
.+..+.+++|.++++|......+..++||+++|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+- +.+
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 4577889999999999877777888999999999 677766421 233444444456777778776666555532 222
Q ss_pred HHHHHHHHHHhhhhceec
Q 038832 290 YLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 290 ~~~m~~~~~~~~~~f~~~ 307 (337)
....+++...+.+.|.|.
T Consensus 347 ~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 347 LRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhHHHHHHHHHHhhHH
Confidence 233344444567777764
No 41
>PRK14098 glycogen synthase; Provisional
Probab=94.98 E-value=0.18 Score=51.25 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=60.9
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCC-CC---CceEEEecCCChhhHHHHHcCC--
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVL-DW---RQFSVHIPVEKIPEIKKILQGI-- 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw---~~~sv~v~~~~~~~l~~~L~~i-- 285 (337)
...+.++.|.+++.|.-..+...-..|||++||+||+....- + .+.+ |+ ..-.+.++..+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 456789999999999877777788999999999999865431 1 1211 22 3345677888877766665531
Q ss_pred ---CHHHHHHHHHHHHHhhhhceec
Q 038832 286 ---SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 286 ---~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.++.+.+|+++. +.+.|.|.
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~ 473 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWK 473 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChH
Confidence 345566665543 34667775
No 42
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.96 E-value=0.13 Score=50.22 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=91.5
Q ss_pred CCCCccCCCceeecCccccccc---cCCCCCCCCCCCCCeEEEEecCCC-chhhHHHHHHhccCCCCeEEeeccCC----
Q 038832 138 SSEGFHPVKDVSMPEIYLKRRI---LRPPQLSQASNNRSILAFFAGGPH-GFVRELLFRYWKHKDDDIQVHEYLPQ---- 209 (337)
Q Consensus 138 ~~~~frp~~DV~iP~~~~~~~~---~~~~~~~~~~~~R~~l~~F~G~~~-~~~R~~L~~~~~~~~~~v~~~~~~~~---- 209 (337)
++-+||-+.|+..|+-.....+ +..+....-..+++..+.+...+. ..-|.++.+.+.+. -.+.+++.|..
T Consensus 159 ~T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~~ 237 (372)
T KOG2619|consen 159 WTMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNAN 237 (372)
T ss_pred ceEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhh-Cceeecccccccccc
Confidence 4556888889998874322211 111111111345666677776654 35677777766554 44566665532
Q ss_pred ---cccHHHhhccCeEEEeeCCC---CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecC-CChhhHHHHH
Q 038832 210 ---TLNYTQLMGQSKFCLCPSGY---EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPV-EKIPEIKKIL 282 (337)
Q Consensus 210 ---~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L 282 (337)
...-.+.+..-||-|.-... .--+..|+-|+.+|.|||+++...... .+. .+..|.|.. ..+.+|...|
T Consensus 238 ~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~---fvP-~~SfI~vdDF~s~~ela~yl 313 (372)
T KOG2619|consen 238 RDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYEN---FVP-PDSFIHVDDFQSPQELAAYL 313 (372)
T ss_pred CCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCccccc---cCC-CcceEehhhcCCHHHHHHHH
Confidence 23577888999999986543 344788999999999999999854332 334 445555533 4566788888
Q ss_pred cCCCHH
Q 038832 283 QGISVE 288 (337)
Q Consensus 283 ~~i~~~ 288 (337)
+.+.+.
T Consensus 314 k~L~~n 319 (372)
T KOG2619|consen 314 KKLDKN 319 (372)
T ss_pred HHhhcC
Confidence 887543
No 43
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.90 E-value=0.25 Score=47.56 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=64.9
Q ss_pred CeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHH
Q 038832 200 DIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIK 279 (337)
Q Consensus 200 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~ 279 (337)
.|.+.+..+ ..+..+.++.|.++++|........-++|||++|| |||.++.-- ..+.+.-..-.+.++. +..++.
T Consensus 281 ~V~f~g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 281 QVIFLPSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG--PLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred eEEEeCCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC--cHHHhccCCceEEeCC-CHHHHH
Confidence 344444332 33557889999999998776656677899999995 777776421 1233332333444554 666555
Q ss_pred HHHcCC--CHHHHHHHHHHHHH-hhhhceec
Q 038832 280 KILQGI--SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 280 ~~L~~i--~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
+.+..+ .++...+|+++.++ +.+.|.|.
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcCHH
Confidence 555443 24567888887776 46778774
No 44
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.85 E-value=0.19 Score=49.73 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=67.6
Q ss_pred eEEEEecCCCchhhHHHHHHhccCC-CCeEEeeccCCcccHHHhhccCeEEEeeCCCC---CCCCcHHHHHhhCceeEEe
Q 038832 174 ILAFFAGGPHGFVRELLFRYWKHKD-DDIQVHEYLPQTLNYTQLMGQSKFCLCPSGYE---VASPRLVESIYSACVPVII 249 (337)
Q Consensus 174 ~l~~F~G~~~~~~R~~L~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~---~~s~rl~dal~~GcIPVii 249 (337)
+.+.+.|. |..+..|.+..+... .++.+....-...+..+.|+.|..+++|.... ....-++|||++|+ |||.
T Consensus 270 i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~-PVI~ 346 (415)
T cd03816 270 LLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCA 346 (415)
T ss_pred EEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCC-CEEE
Confidence 55556663 333444444333221 13333221112457888999999988643211 13556999999999 9999
Q ss_pred eCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC-----CHHHHHHHHHHHHHhh
Q 038832 250 SDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI-----SVEEYLEKQKRVVQVQ 301 (337)
Q Consensus 250 ~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i-----~~~~~~~m~~~~~~~~ 301 (337)
++.-- ..++|.=..-.+.++ +..++.+.+..+ ++++..+|.++.++..
T Consensus 347 s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 347 LDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred eCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 87432 234443233333443 566555544433 2677888888777654
No 45
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.81 E-value=0.24 Score=47.48 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=66.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc-ccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH-YVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 287 (337)
.+..+.++++..++.|.-......-+.|||++|| |||..+- ... .+.+.=.+-.+.++..+..++.+.|..+ .+
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~--~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP--SEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc--HHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 3567789999999988765556678999999999 7777652 111 2334334556677877877766655553 45
Q ss_pred HHHHHHHHHHHHhhhhceec
Q 038832 288 EEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~~~~~~f~~~ 307 (337)
+.+.+|.++.++..+.|.|.
T Consensus 347 ~~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 347 KLLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 68889998888877777664
No 46
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.78 E-value=0.063 Score=41.17 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=49.1
Q ss_pred EEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEec-CCChhhHHHHHcCCCHHHHHHHHHHHHH-h
Q 038832 223 CLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIP-VEKIPEIKKILQGISVEEYLEKQKRVVQ-V 300 (337)
Q Consensus 223 cl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~-~~~~~~l~~~L~~i~~~~~~~m~~~~~~-~ 300 (337)
||-|.-.+..+.|++|+|++||. ||..+. ..+.+.++..+-.+.+. .+++.+....|.+ +++++.+|.+++++ +
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~-vi~~~~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTP-VISDDS--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERV 77 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCe-EEECCh--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 34443334467899999999995 444433 12333455665566664 3344443344333 67888889888876 4
Q ss_pred hhhceec
Q 038832 301 QRHFLMN 307 (337)
Q Consensus 301 ~~~f~~~ 307 (337)
.+++.|.
T Consensus 78 ~~~~t~~ 84 (92)
T PF13524_consen 78 LKRHTWE 84 (92)
T ss_pred HHhCCHH
Confidence 5577664
No 47
>PRK14099 glycogen synthase; Provisional
Probab=94.71 E-value=0.29 Score=49.70 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred cHHHhh-ccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCC-CCCCC--------ceEEEecCCChhhHHHH
Q 038832 212 NYTQLM-GQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSD-VLDWR--------QFSVHIPVEKIPEIKKI 281 (337)
Q Consensus 212 ~~~~~~-~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~--------~~sv~v~~~~~~~l~~~ 281 (337)
+....+ +.|.+.+.|.-..+...-..|||++||+||+-... -+ .+ ++|.+ .-.+.++..+...|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~G-Gl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVG-GL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCC-Cc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 445555 46888888877777788899999999999884321 11 22 23442 34677888888877666
Q ss_pred HcC----C-CHHHHHHHHHHHHHhhhhceecC
Q 038832 282 LQG----I-SVEEYLEKQKRVVQVQRHFLMNR 308 (337)
Q Consensus 282 L~~----i-~~~~~~~m~~~~~~~~~~f~~~~ 308 (337)
|.. + +++...+|+++.. .+.|.|..
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~ 467 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRN 467 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHH
Confidence 653 2 4567778887764 46787763
No 48
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.69 E-value=0.19 Score=50.26 Aligned_cols=91 Identities=14% Similarity=0.224 Sum_probs=58.9
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCC-CCCC-----ceEEEecCCChhhHHHHHcCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDV-LDWR-----QFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~-idw~-----~~sv~v~~~~~~~l~~~L~~i 285 (337)
...+.++.+.+.+.|.-..+...-..|||++||.||.-... ...+. .|.. .-.+.++..+..++.+.+..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 34577899999999977777777899999999988764332 12233 2332 146677877777666655543
Q ss_pred -----CHHHHHHHHHHHHHhhhhceec
Q 038832 286 -----SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 286 -----~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.++...+|.++... +.|.|.
T Consensus 440 l~~~~~~~~~~~~~~~~~~--~~fsw~ 464 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA--QDFSWD 464 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc--cCCChH
Confidence 24556666665432 456664
No 49
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.28 E-value=0.42 Score=45.07 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=56.3
Q ss_pred ccHHHhhccCeEEEeeCCC-CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCC-hhhHHHHHcCCCHH
Q 038832 211 LNYTQLMGQSKFCLCPSGY-EVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEK-IPEIKKILQGISVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~~~l~~~L~~i~~~ 288 (337)
.+..+.+..+..++.|.-. .....-++|||++|| |||.++.- +..+++.-. ...++..+ +.+....|.+ .++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DPE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CHH
Confidence 3566788888888887655 455667999999999 77777632 234444332 33345455 4443333333 235
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 038832 289 EYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~~~~~~-~~~f~~~ 307 (337)
.+.+|.++.+.. .+.|.|.
T Consensus 333 ~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 333 EVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 677787777764 4467774
No 50
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=93.99 E-value=0.7 Score=44.54 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=61.3
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCC-h-hhHHHHHcCCCH
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEK-I-PEIKKILQGISV 287 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~-~~l~~~L~~i~~ 287 (337)
..+..+.++.+..++.|........-+.|||++| +|||.++.-.++ +.|.-....+.++..+ + ..|...|. ++
T Consensus 264 ~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~ 338 (372)
T cd03792 264 DLEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DP 338 (372)
T ss_pred HHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CH
Confidence 3466788899999998876666677899999999 599998753332 3343333344444322 1 12444443 46
Q ss_pred HHHHHHHHHHHHh-hhhceec
Q 038832 288 EEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~~~-~~~f~~~ 307 (337)
+...+|.++.++. .+.|.|.
T Consensus 339 ~~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 339 ELRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCHH
Confidence 6778898888774 6788875
No 51
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.67 E-value=0.34 Score=47.40 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=55.8
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC---CH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI---SV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i---~~ 287 (337)
.+..+.++.+..++.|.-.......+.|||++|| |||.++.-- ..+++.=.. .+.++. +..++.+.|..+ ..
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEEAISILR 335 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCCc-eeecCC-CHHHHHHHHHHHHhChh
Confidence 4678889999999888655455678999999999 667666432 234443222 333433 555544444332 22
Q ss_pred HHHHHHHHHHHHhhhhceecC
Q 038832 288 EEYLEKQKRVVQVQRHFLMNR 308 (337)
Q Consensus 288 ~~~~~m~~~~~~~~~~f~~~~ 308 (337)
++...+++...++.+.|.|..
T Consensus 336 ~~~~~~~~~~~~~~~~fs~~~ 356 (398)
T cd03796 336 TGKHDPWSFHNRVKKMYSWED 356 (398)
T ss_pred hhhhHHHHHHHHHHhhCCHHH
Confidence 222233444456778888863
No 52
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=93.66 E-value=0.3 Score=47.08 Aligned_cols=87 Identities=17% Similarity=0.055 Sum_probs=55.8
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCC-HHH-
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGIS-VEE- 289 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~-~~~- 289 (337)
.+.+.++.+..++.|........-+.|||++| +|||.++..-- ..++|.=..-.+.++..|..++.+.+..+- +.+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 45666788888888877666678899999999 58888872221 224443344556678888887766666542 222
Q ss_pred --HHHHHHHHHHh
Q 038832 290 --YLEKQKRVVQV 300 (337)
Q Consensus 290 --~~~m~~~~~~~ 300 (337)
...+++++++.
T Consensus 328 ~~~~~~~~~~~~~ 340 (359)
T PRK09922 328 YQHDAIPNSIERF 340 (359)
T ss_pred CCHHHHHHHHHHh
Confidence 34445554444
No 53
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.62 E-value=0.15 Score=47.56 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=46.4
Q ss_pred ccHHHhhccCeEEEeeCC-CCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC
Q 038832 211 LNYTQLMGQSKFCLCPSG-YEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
.+..+.++.+.+++.|.- .......++|||++|+ |||.+|.-- ..++++=..-.+.++. +.++.+.|..+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~--~~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGA--VPEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCC--chhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 356788999999999864 2445677999999998 999988532 2344433222333443 66666666554
No 54
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.48 E-value=0.62 Score=47.00 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=65.3
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCC------CceEEEecCCChhhHHHHHc
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDW------RQFSVHIPVEKIPEIKKILQ 283 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw------~~~sv~v~~~~~~~l~~~L~ 283 (337)
..+..+.|+.+..++.|.-......-++|||++|| |||.+|.- ...++++= ....+.++..|..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 34567788899998888655455678999999999 88887642 12233322 24677888888877666665
Q ss_pred CC--CHHHHHHHHHHHHH-hhhhceec
Q 038832 284 GI--SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 284 ~i--~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
.+ +++...+|.++.+. +.+.|.|.
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 53 46778888888876 45566553
No 55
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.39 E-value=0.059 Score=43.91 Aligned_cols=77 Identities=18% Similarity=0.338 Sum_probs=44.6
Q ss_pred CeEEeeccCCcccHHHhhccCeEEEeeCC-CCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhH
Q 038832 200 DIQVHEYLPQTLNYTQLMGQSKFCLCPSG-YEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEI 278 (337)
Q Consensus 200 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l 278 (337)
.+.+.+.. .++.+.++++..+++|.- +...+..++|++.+|| |||.++. ++.+.+.-....+.+ ..+..++
T Consensus 54 ~v~~~g~~---~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l 125 (135)
T PF13692_consen 54 NVRFHGFV---EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEEL 125 (135)
T ss_dssp TEEEE-S----HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHH
T ss_pred CEEEcCCH---HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHH
Confidence 45555543 378999999999999874 2345689999999999 5665655 444444335566666 6676666
Q ss_pred HHHHcC
Q 038832 279 KKILQG 284 (337)
Q Consensus 279 ~~~L~~ 284 (337)
.+.|..
T Consensus 126 ~~~i~~ 131 (135)
T PF13692_consen 126 AEAIER 131 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 56
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.22 E-value=0.2 Score=49.96 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHhhccC----eEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--C
Q 038832 213 YTQLMGQS----KFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--S 286 (337)
Q Consensus 213 ~~~~~~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~ 286 (337)
..+.++.+ ..++.|.-......-+.|||++|| |||.++.- ...++++=.+-.+.++..|..++.+.+..+ +
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred HHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 44445544 444555544455677999999999 99999852 234555445567778888888766665543 4
Q ss_pred HHHHHHHHHHHHH-hhhhceec
Q 038832 287 VEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 287 ~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
++...+|.++.+. +.++|.|.
T Consensus 407 ~~~~~~~~~~a~~~~~~~fsw~ 428 (439)
T TIGR02472 407 SSQWQLWSRNGIEGVRRHYSWD 428 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCCHH
Confidence 5667777777765 56788885
No 57
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.06 E-value=0.35 Score=47.25 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=59.7
Q ss_pred cHHHhhccCeEEEeeC--CCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CH
Q 038832 212 NYTQLMGQSKFCLCPS--GYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SV 287 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~--G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 287 (337)
+....++.+..+++|. |.| ....+.|||++|| |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ ++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 4667889999999885 333 3456999999998 89988742 122221123345566 6777666555543 45
Q ss_pred HHHHHHHHHHHHh-hhhceec
Q 038832 288 EEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 288 ~~~~~m~~~~~~~-~~~f~~~ 307 (337)
+...+|.++.++. .+.|.|.
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 6678888888764 5788885
No 58
>PLN02949 transferase, transferring glycosyl groups
Probab=92.40 E-value=0.62 Score=47.14 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=58.6
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCC-CC--CceEEEecCCChhhHHHHHcCC--
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVL-DW--RQFSVHIPVEKIPEIKKILQGI-- 285 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw--~~~sv~v~~~~~~~l~~~L~~i-- 285 (337)
.+..+.+++|.+++.|.-......-+.|||++||+||..... =|-.+++ ++ ..-.+.. .++.++.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~--~~~~~la~ai~~ll~ 421 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA--TTVEEYADAILEVLR 421 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC--CCHHHHHHHHHHHHh
Confidence 456778899998888776666677899999999977775432 1222332 21 1111111 2555555544442
Q ss_pred -CHHHHHHHHHHHHHhhhhceec
Q 038832 286 -SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 286 -~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
++++..+|+++.++..+.|.+.
T Consensus 422 ~~~~~r~~m~~~ar~~~~~FS~e 444 (463)
T PLN02949 422 MRETERLEIAAAARKRANRFSEQ 444 (463)
T ss_pred CCHHHHHHHHHHHHHHHHHcCHH
Confidence 5677788998888766777664
No 59
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=92.36 E-value=0.85 Score=42.94 Aligned_cols=72 Identities=21% Similarity=0.101 Sum_probs=47.6
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
..+..+.+++|.++++|.-......-+.|||++|| |||.++.-. ..+.+.= ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 34677889999999999876677888999999999 556565322 2233322 334444555556666555554
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=92.11 E-value=1.5 Score=43.21 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=57.5
Q ss_pred cHHHhhccC--eEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecC-CChhhHHHHHcCC--C
Q 038832 212 NYTQLMGQS--KFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPV-EKIPEIKKILQGI--S 286 (337)
Q Consensus 212 ~~~~~~~~S--~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L~~i--~ 286 (337)
+..+.++.+ ...+.|........-+.|||++|+ |||.++--- ..++|+=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 445666543 333334433345667999999996 999887422 2344543434555654 4666665555553 4
Q ss_pred HHHHHHHHHHHHHh-hhhceec
Q 038832 287 VEEYLEKQKRVVQV-QRHFLMN 307 (337)
Q Consensus 287 ~~~~~~m~~~~~~~-~~~f~~~ 307 (337)
++...+|+++.++. .+.|.+.
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH
Confidence 77889999888875 4577664
No 61
>PHA01633 putative glycosyl transferase group 1
Probab=91.85 E-value=0.36 Score=46.81 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=56.9
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCC--C----------------ceEEEecC
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDW--R----------------QFSVHIPV 272 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw--~----------------~~sv~v~~ 272 (337)
.+..+.++.|.+.+.|.-..+...-+.|||++|| |||.++-- |..++.++ + .....++.
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~--~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~ 291 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMP--PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHK 291 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCC--CceeecCCccceeeCCCCHHHhcCcccCceeeecC
Confidence 3567889999998888766677788999999999 99988652 33333222 1 12234555
Q ss_pred CChhhHHHHHcCC-CHHHHHHHHHHHHHhhhhceec
Q 038832 273 EKIPEIKKILQGI-SVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 273 ~~~~~l~~~L~~i-~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.+..++.+.|... ...+-.++..+++...+.|.|.
T Consensus 292 ~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~ 327 (335)
T PHA01633 292 FQIEDMANAIILAFELQDREERSMKLKELAKKYDIR 327 (335)
T ss_pred CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHH
Confidence 5666555544332 1112223344455666677664
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=91.44 E-value=0.47 Score=45.72 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=55.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCC--------------------ceEEEe
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWR--------------------QFSVHI 270 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~--------------------~~sv~v 270 (337)
.+..+.++.+..++.|.-......-+.|||++|| |||.++.- ...+++.=. .+.+.+
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~g--g~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v 277 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEKG--AWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFL 277 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCCC--CchhhccCCCceEEeeecccccccccCCccccccc
Confidence 4567789999999988765555677999999999 67776631 222332211 123333
Q ss_pred cCCChh---hHHHHHcCCCHHHHHH-HHHHHHHhhhhceec
Q 038832 271 PVEKIP---EIKKILQGISVEEYLE-KQKRVVQVQRHFLMN 307 (337)
Q Consensus 271 ~~~~~~---~l~~~L~~i~~~~~~~-m~~~~~~~~~~f~~~ 307 (337)
+.++.. ++...|...++++..+ +.++.+.+.+.|.|.
T Consensus 278 ~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~ 318 (331)
T PHA01630 278 DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYN 318 (331)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 433322 3555555433344444 444445567888875
No 63
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.78 E-value=1.7 Score=44.92 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=57.9
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHH---cCCCH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKIL---QGISV 287 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L---~~i~~ 287 (337)
.+..+.|+.+..++.|.-......-+.|||++|| |||.++.--. .+.|.=..-.+.++..|...+.+.+ .++.+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ 540 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNLDQACRYAEKLVN 540 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhHHHHHHHHHHHHH
Confidence 3566778899988888655666788999999999 9998875322 3444444556667777654433322 21111
Q ss_pred --HHHHHHHHHHHH-hhhhceec
Q 038832 288 --EEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 288 --~~~~~m~~~~~~-~~~~f~~~ 307 (337)
++...|.++.+. +.+.|.|.
T Consensus 541 ll~~~~~mg~~ARe~V~e~FS~e 563 (578)
T PRK15490 541 LWRSRTGICQQTQSFLQERFTVE 563 (578)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHH
Confidence 122345455554 55677664
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.15 E-value=1.2 Score=49.20 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHhhccC----eEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--C
Q 038832 213 YTQLMGQS----KFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--S 286 (337)
Q Consensus 213 ~~~~~~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~ 286 (337)
..+.++.+ ..++.|.=..+...-+.|||++|+ |||.++.- ...++|.-..-.+.++..|...|.+.|..+ +
T Consensus 561 vp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 561 VPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC
Confidence 34555544 245556545566678999999996 89998742 234555555667788888888777666554 4
Q ss_pred HHHHHHHHHHHHHhhhhceec
Q 038832 287 VEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 287 ~~~~~~m~~~~~~~~~~f~~~ 307 (337)
++...+|.++.++..+.|.|.
T Consensus 638 pelr~~m~~~gr~~v~~FSWe 658 (1050)
T TIGR02468 638 KQLWAECRQNGLKNIHLFSWP 658 (1050)
T ss_pred HHHHHHHHHHHHHHHHHCCHH
Confidence 566888998888766778875
No 65
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=88.12 E-value=0.99 Score=46.75 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=62.7
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCC-C-CCCC-CCCceEEEecC-------CChhhHHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLP-F-SDVL-DWRQFSVHIPV-------EKIPEIKK 280 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lP-f-~~~i-dw~~~sv~v~~-------~~~~~l~~ 280 (337)
.+|.+.++.+.-++.|.-..++..-..|||++|+ |||.++.--++ + .+++ +-.+..+.|.. +.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4699999999999999888888888999999995 99999864432 0 1233 33345666652 22334444
Q ss_pred HHcCCC-HHHHHHHHHHHH--HhhhhceecC
Q 038832 281 ILQGIS-VEEYLEKQKRVV--QVQRHFLMNR 308 (337)
Q Consensus 281 ~L~~i~-~~~~~~m~~~~~--~~~~~f~~~~ 308 (337)
.|..+. .+...+|.++.. ++.+.|.|..
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~ 575 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRN 575 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 444422 223333444433 7788899864
No 66
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=87.75 E-value=2 Score=43.85 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=58.4
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc-ccCCCCCCCCCCceEEEecC----CC----hhhHHHHH
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH-YVLPFSDVLDWRQFSVHIPV----EK----IPEIKKIL 282 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lPf~~~idw~~~sv~v~~----~~----~~~l~~~L 282 (337)
+..+.++.+.-++.|.=......-+.|||++|| |||.+|- .-. .++|.=..-.+.++. .+ +.++.+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 466777888877777655556677999999998 7777762 122 234433333444441 22 44443333
Q ss_pred cC-CCHHHHHHHHHHHHHhhhhceec
Q 038832 283 QG-ISVEEYLEKQKRVVQVQRHFLMN 307 (337)
Q Consensus 283 ~~-i~~~~~~~m~~~~~~~~~~f~~~ 307 (337)
.. +.++++.+|.++..+..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 24667889999998888888664
No 67
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=86.79 E-value=0.83 Score=36.13 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=30.1
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+..++ |...++.+| .+...|.. ..| .|++|++||+++|
T Consensus 1 Kv~i~T~G--------C~~N~~Dse-~i~~~l~~--~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 1 KVYIETLG--------CQMNQYDSE-RIASILQA--AGYEIVDDPEEADVIII 42 (98)
T ss_pred CEEEEECC--------CcccHHHHH-HHHHHHHh--cCCeeecccccCCEEEE
Confidence 56776664 667788887 55566665 444 6999999999986
No 68
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=86.09 E-value=7.4 Score=37.94 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=76.0
Q ss_pred CeEEEEecCCCchh---hHHHHHHhcc---CCCCeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCcee
Q 038832 173 SILAFFAGGPHGFV---RELLFRYWKH---KDDDIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVP 246 (337)
Q Consensus 173 ~~l~~F~G~~~~~~---R~~L~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP 246 (337)
++-+.++|++++.- |-+-++.+.. -+.+|++....+ -.+..+.+.++.+.+.-.=+........|+|++|.||
T Consensus 305 ~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIp 383 (465)
T KOG1387|consen 305 PIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIP 383 (465)
T ss_pred CceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCC-HHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceE
Confidence 45677899997643 3222222211 123454433211 2357788999999998777777788899999999999
Q ss_pred EEeeCcccCCCCC-CCCCCceEEEe-cCCChh---hHHHHHcCCCHHHHHHHHHHHHHhhhhc
Q 038832 247 VIISDHYVLPFSD-VLDWRQFSVHI-PVEKIP---EIKKILQGISVEEYLEKQKRVVQVQRHF 304 (337)
Q Consensus 247 Vii~d~~~lPf~~-~idw~~~sv~v-~~~~~~---~l~~~L~~i~~~~~~~m~~~~~~~~~~f 304 (337)
|.=... =|--| +.+|..-..-+ .+++.+ .+..++.. +.++...||++.+.-..+|
T Consensus 384 i~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~-~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 384 IVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKL-NYDERNMMRRNARKSLARF 443 (465)
T ss_pred EEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHh
Confidence 985432 12222 24554333222 233322 35555543 5666888888888766666
No 69
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=85.89 E-value=1.2 Score=43.31 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=42.7
Q ss_pred ccHHHhhccCeEEEeeCCCC-----CCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC
Q 038832 211 LNYTQLMGQSKFCLCPSGYE-----VASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG 284 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~-----~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 284 (337)
.+..+.++.+..|++|--.. .....++|+|++|+ |||.++ +.+.++...-.+ +...+..++.+.|..
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~-~~~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVV-LIADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEE-EeCCCHHHHHHHHHH
Confidence 45778899999999986432 23457999999998 788654 233333333233 334466666555555
No 70
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=85.83 E-value=4.2 Score=34.94 Aligned_cols=78 Identities=19% Similarity=0.095 Sum_probs=48.2
Q ss_pred CeEEEEecCCCchh-hHHHHHHhccCCCCeEEeeccCCcccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeC
Q 038832 173 SILAFFAGGPHGFV-RELLFRYWKHKDDDIQVHEYLPQTLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISD 251 (337)
Q Consensus 173 ~~l~~F~G~~~~~~-R~~L~~~~~~~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 251 (337)
++-+.+.|...... .+.+..... ....+.+.+...........++.|..+++|......+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALL-LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcC-CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 56677777654322 111111111 123455544332344566667779999999988788899999999987 555555
Q ss_pred c
Q 038832 252 H 252 (337)
Q Consensus 252 ~ 252 (337)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 4
No 71
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=85.74 E-value=10 Score=36.47 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=52.4
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC--CHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI--SVE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 288 (337)
.++...|+.+.+++.+.|. -+.||+.+|| |||...+.- -..+.+. ....+.++ .+..+|.+.+..+ +++
T Consensus 266 ~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~-~~~e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 266 LDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTT-ERPETVE-AGTNKLVG-TDKENITKAAKRLLTDPD 336 (365)
T ss_pred HHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCC-CChHHHh-cCceEEeC-CCHHHHHHHHHHHHhChH
Confidence 4677889999998877642 2799999997 788753211 1223343 33444454 4555555555443 122
Q ss_pred HHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHHH
Q 038832 289 EYLEKQKRVVQVQRHFLMNRPAKPFDLMHMVMHSVW 324 (337)
Q Consensus 289 ~~~~m~~~~~~~~~~f~~~~~~~~~daf~~~l~~l~ 324 (337)
...+|.++ . .+-+.++|...+++.|.
T Consensus 337 ~~~~~~~~----~------~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 337 EYKKMSNA----S------NPYGDGEASERIVEELL 362 (365)
T ss_pred HHHHhhhc----C------CCCcCchHHHHHHHHHH
Confidence 22222211 1 11234577777777654
No 72
>PLN02939 transferase, transferring glycosyl groups
Probab=85.22 E-value=2.5 Score=46.31 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=60.9
Q ss_pred HHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCC-CCCCC--------ceEEEecCCChhhHHHHHcC
Q 038832 214 TQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSD-VLDWR--------QFSVHIPVEKIPEIKKILQG 284 (337)
Q Consensus 214 ~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~--------~~sv~v~~~~~~~l~~~L~~ 284 (337)
...++.|.++++|.=..+...-..|||++||+||+....= + .+ +.|++ .-.+.++..+...+.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L--~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~r 927 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-L--NDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALER 927 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-C--cceeecCCccccccCCCceEEecCCCHHHHHHHHHH
Confidence 3679999999999877788888999999999999764321 1 12 22332 23556777777766554432
Q ss_pred ----C--CHHHHHHHHHHHHHhhhhceecC
Q 038832 285 ----I--SVEEYLEKQKRVVQVQRHFLMNR 308 (337)
Q Consensus 285 ----i--~~~~~~~m~~~~~~~~~~f~~~~ 308 (337)
+ +++.+.+|+++. +.+.|.|..
T Consensus 928 AL~~~~~dpe~~~~L~~~a--m~~dFSWe~ 955 (977)
T PLN02939 928 AFNYYKRKPEVWKQLVQKD--MNIDFSWDS 955 (977)
T ss_pred HHHHhccCHHHHHHHHHHH--HHhcCCHHH
Confidence 2 467778887654 346788864
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=85.14 E-value=9.9 Score=36.72 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=46.5
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCC-----CCCCCceEEEecCCChhhHHHHHcCC-
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSD-----VLDWRQFSVHIPVEKIPEIKKILQGI- 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-----~idw~~~sv~v~~~~~~~l~~~L~~i- 285 (337)
+..+.|+.|...+...| ..-+.||+++|+ |||+.+.. |-.+ .+.-..+.+.. .+..++.+.+..+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 35688899987665333 234889999998 68776531 1111 11112344433 4555555544443
Q ss_pred -CHHHHHHHHHHHHHhh
Q 038832 286 -SVEEYLEKQKRVVQVQ 301 (337)
Q Consensus 286 -~~~~~~~m~~~~~~~~ 301 (337)
+++.+.+|.++.+++.
T Consensus 337 ~~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 337 QDDMKLLQMKEAMKSLY 353 (380)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 4667788887766643
No 74
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=84.76 E-value=11 Score=35.03 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEecCCCch-hhHHHHHHhccCCC--CeEEeeccC--------C----cccHHHhhccCeEEEeeCCCCCC
Q 038832 168 ASNNRSILAFFAGGPHGF-VRELLFRYWKHKDD--DIQVHEYLP--------Q----TLNYTQLMGQSKFCLCPSGYEVA 232 (337)
Q Consensus 168 ~~~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~--~v~~~~~~~--------~----~~~~~~~~~~S~Fcl~p~G~~~~ 232 (337)
|=.+|.-.++|+|+.++. .|..|++...+.+. ++.+...+. . ...-.+...+-||=+...|.+ .
T Consensus 79 pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~-~ 157 (256)
T smart00672 79 KWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA-W 157 (256)
T ss_pred CccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-c
Confidence 345688889999999887 89999887665432 233332110 0 012345556789999999986 6
Q ss_pred CCcHHHHHhhCceeEEeeCcccCCCCC-CCCCCceEEEecC--CC--hhhHHHHHcCCCHHHHHHHHHHHHHhhh
Q 038832 233 SPRLVESIYSACVPVIISDHYVLPFSD-VLDWRQFSVHIPV--EK--IPEIKKILQGISVEEYLEKQKRVVQVQR 302 (337)
Q Consensus 233 s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~~~sv~v~~--~~--~~~l~~~L~~i~~~~~~~m~~~~~~~~~ 302 (337)
|.||.--|.+|++++.....+..=|.+ +..|.-+. -|.. +| +.+..+.+++ .+++..++-++++...+
T Consensus 158 S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~ 230 (256)
T smart00672 158 SVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQ 230 (256)
T ss_pred hhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 789999999999988877543222322 34555542 2222 33 6676666665 45556666666665433
No 75
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=83.52 E-value=5.4 Score=39.12 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=52.1
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCC-----CCceEEEecCCChhhHHHHHcCC-
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLD-----WRQFSVHIPVEKIPEIKKILQGI- 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~id-----w~~~sv~v~~~~~~~l~~~L~~i- 285 (337)
+..+.|+.|.+++..+|. .-+.||+++|+ |||+.+.. |-++..+ =..+++.+ .+..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~--~~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIA--DTPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEe--CCHHHHHHHHHHHh
Confidence 567889999999885442 24899999997 88887642 3222211 12344433 2444444444432
Q ss_pred -CHHHHHHHHHHHHHhhhhc
Q 038832 286 -SVEEYLEKQKRVVQVQRHF 304 (337)
Q Consensus 286 -~~~~~~~m~~~~~~~~~~f 304 (337)
+++.+.+|+++.+...+.+
T Consensus 337 ~~~~~~~~m~~~~~~~~~~~ 356 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIKY 356 (391)
T ss_pred cCHHHHHHHHHHHHHhcCCC
Confidence 4677888888888765544
No 76
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.11 E-value=2.7 Score=39.79 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=51.0
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCC-----CCCCCCceEEEecCCC--hhhHHHHHcC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFS-----DVLDWRQFSVHIPVEK--IPEIKKILQG 284 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~-----~~idw~~~sv~v~~~~--~~~l~~~L~~ 284 (337)
++.+.|..+..++.+.| ..-++|||.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67899999999998766 245999999997 7777532000000 1233345566676654 5555554443
Q ss_pred C--CHHHHHHHHHHHHH
Q 038832 285 I--SVEEYLEKQKRVVQ 299 (337)
Q Consensus 285 i--~~~~~~~m~~~~~~ 299 (337)
+ +++...+|.++.+.
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 2 35566667666644
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=81.78 E-value=15 Score=35.68 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=48.6
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCC------CCCCceEEEecCCChhhHHHHHcCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDV------LDWRQFSVHIPVEKIPEIKKILQGI 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~------idw~~~sv~v~~~~~~~l~~~L~~i 285 (337)
+..+.|+.|...+.+.|. .-+.|||++|+ |||+.+. .|-++. ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 578889999998887762 23899999998 7887763 232221 22 3344433 4555555544433
Q ss_pred ---CHHHHHHHHHHHHH
Q 038832 286 ---SVEEYLEKQKRVVQ 299 (337)
Q Consensus 286 ---~~~~~~~m~~~~~~ 299 (337)
+++...+|+++.++
T Consensus 345 l~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 345 FGDKSDELEAMSENALK 361 (382)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 25667777766655
No 78
>PLN00142 sucrose synthase
Probab=81.59 E-value=5.5 Score=43.12 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=59.4
Q ss_pred Hhhcc-CeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC------CCH
Q 038832 215 QLMGQ-SKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG------ISV 287 (337)
Q Consensus 215 ~~~~~-S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~------i~~ 287 (337)
..+++ +..+++|.-..+...-+.|||++|+ |||.++.--+ .++|.-..-.+.|+..+...+.+.|.. -++
T Consensus 661 r~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 661 RYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred HHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCH
Confidence 33443 3445667555566788999999998 7777764222 234444556777888887765555432 257
Q ss_pred HHHHHHHHHHH-HhhhhceecC
Q 038832 288 EEYLEKQKRVV-QVQRHFLMNR 308 (337)
Q Consensus 288 ~~~~~m~~~~~-~~~~~f~~~~ 308 (337)
+...+|.++.+ ++.+.|.|..
T Consensus 738 ~lr~~mg~~Ar~rv~e~FSWe~ 759 (815)
T PLN00142 738 SYWNKISDAGLQRIYECYTWKI 759 (815)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 77888888865 4678898863
No 79
>PLN02316 synthase/transferase
Probab=80.10 E-value=13 Score=41.38 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred HhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCC-CCCCC------------ceEEEecCCChhhHHHH
Q 038832 215 QLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSD-VLDWR------------QFSVHIPVEKIPEIKKI 281 (337)
Q Consensus 215 ~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~------------~~sv~v~~~~~~~l~~~ 281 (337)
..++.|.+.++|.=..+...-..|||++||+||+-... -+ .+ +.|++ .-.+.++..+...|...
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL--~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~A 991 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GL--FDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYA 991 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-Cc--HhhccccccccccccccccCCceEEeCCCCHHHHHHH
Confidence 57999999999987788889999999999999996443 11 22 23442 34667788777665444
Q ss_pred HcC-CC--HHHHHHHHHHHHH-hhhhceecC
Q 038832 282 LQG-IS--VEEYLEKQKRVVQ-VQRHFLMNR 308 (337)
Q Consensus 282 L~~-i~--~~~~~~m~~~~~~-~~~~f~~~~ 308 (337)
|.. +. .+....|++..++ +.+.|.|..
T Consensus 992 L~raL~~~~~~~~~~~~~~r~~m~~dFSW~~ 1022 (1036)
T PLN02316 992 LNRAISAWYDGRDWFNSLCKRVMEQDWSWNR 1022 (1036)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhCCHHH
Confidence 333 11 1223334444444 356788864
No 80
>PRK10125 putative glycosyl transferase; Provisional
Probab=79.80 E-value=7.7 Score=38.39 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=50.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKI 281 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 281 (337)
.+..+.++.+...+.|.-......-+.|||++|| |||.+|-=-. .++++= .-.+.++..|+..|.+.
T Consensus 298 ~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~--~Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 298 RKLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAA--REVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCCh--HHhEeC-CcEEEECCCCHHHHHhc
Confidence 3567888889888888777777888999999997 8888874322 345542 25778899998887764
No 81
>PLN02275 transferase, transferring glycosyl groups
Probab=78.35 E-value=10 Score=36.80 Aligned_cols=103 Identities=11% Similarity=0.121 Sum_probs=58.3
Q ss_pred CeEEEEecCCCchhhHHHHHHhccC-CCCeEEeeccCCcccHHHhhccCeEEEeeCCC---CCCCCcHHHHHhhCceeEE
Q 038832 173 SILAFFAGGPHGFVRELLFRYWKHK-DDDIQVHEYLPQTLNYTQLMGQSKFCLCPSGY---EVASPRLVESIYSACVPVI 248 (337)
Q Consensus 173 ~~l~~F~G~~~~~~R~~L~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVi 248 (337)
.+.+.+.|. |..|..|.+..+.. -.++.+....-...+..+.|+.+..++.|... .....-++|||++|+ |||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVV 337 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVC 337 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEE
Confidence 466777873 45566565544422 12354433222356788999999999876321 113456999999998 888
Q ss_pred eeCcccCCCCCCCCCCceEEEecCCChhhHHHHH
Q 038832 249 ISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKIL 282 (337)
Q Consensus 249 i~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L 282 (337)
.++.-- ..++|.=....+.++ +..++.+.|
T Consensus 338 a~~~gg--~~eiv~~g~~G~lv~--~~~~la~~i 367 (371)
T PLN02275 338 AVSYSC--IGELVKDGKNGLLFS--SSSELADQL 367 (371)
T ss_pred EecCCC--hHHHccCCCCeEEEC--CHHHHHHHH
Confidence 876311 233443333344454 344444433
No 82
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=78.12 E-value=12 Score=37.19 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCCCeEEEEecCCCch-hhHHHHHHhccCCC--CeEEeecc-------CCcccHHHhhccCeEEEeeCCCCCCCCcHHHH
Q 038832 170 NNRSILAFFAGGPHGF-VRELLFRYWKHKDD--DIQVHEYL-------PQTLNYTQLMGQSKFCLCPSGYEVASPRLVES 239 (337)
Q Consensus 170 ~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~--~v~~~~~~-------~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~da 239 (337)
.+|.-.++|+|+..+. .|..|+..-.+... +..+.... .....-.+...+-+|-+...|.+ +|.||.--
T Consensus 155 ~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~-~S~Rlkyl 233 (395)
T PF05686_consen 155 EDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNA-WSGRLKYL 233 (395)
T ss_pred hhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCce-eehhHHHH
Confidence 4677889999998765 49888765443221 22222110 11123345567889999999987 57899999
Q ss_pred HhhCceeEEeeCcccCCCCC-CCCCCceEEEecC-CChhhHHHHHcCC--CHHHHHHHHHHHHHh
Q 038832 240 IYSACVPVIISDHYVLPFSD-VLDWRQFSVHIPV-EKIPEIKKILQGI--SVEEYLEKQKRVVQV 300 (337)
Q Consensus 240 l~~GcIPVii~d~~~lPf~~-~idw~~~sv~v~~-~~~~~l~~~L~~i--~~~~~~~m~~~~~~~ 300 (337)
|++|++.+.....+.-=|.+ +.+|.-+. -|.. ++..+|.+.++=. .+++..++=++++..
T Consensus 234 L~c~SvVl~~~~~~~e~f~~~L~P~vHYV-PV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f 297 (395)
T PF05686_consen 234 LACNSVVLKVKSPYYEFFYRALKPWVHYV-PVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRF 297 (395)
T ss_pred HcCCceEEEeCCcHHHHHHhhhcccccEE-EeccccchhhHHHHhhhcccChHHHHHHHHHHHHH
Confidence 99999988776543222222 45666553 3433 3444555444332 245555555555553
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.96 E-value=16 Score=39.05 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=55.9
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCCh------hhHHHHHcCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKI------PEIKKILQGI 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~------~~l~~~L~~i 285 (337)
+....|+.+...+.|.-......-+.|||.+|| |||.++.-- ..++|.=..-.+.++..+. ..|.++|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 466778888887777555556788999999997 788877422 2344543445666775553 2344444443
Q ss_pred CHHHHHHHHHHHHH-hhhhceec
Q 038832 286 SVEEYLEKQKRVVQ-VQRHFLMN 307 (337)
Q Consensus 286 ~~~~~~~m~~~~~~-~~~~f~~~ 307 (337)
.. -.+|+++.+. +.+.|.|.
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLN 681 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHH
Confidence 21 2345555554 45678774
No 84
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=77.43 E-value=4.9 Score=40.54 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=61.1
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCce---eEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC--
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACV---PVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG-- 284 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcI---PVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 284 (337)
..+..+.++.|.-++.|.-......-..|||++||= |||+++.--.+-. ..-.+.++..|..++.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 346788899999988877655556778999999995 5898874322111 233677888888776665543
Q ss_pred -CCHHHHHHHHHHHHHhhhhc
Q 038832 285 -ISVEEYLEKQKRVVQVQRHF 304 (337)
Q Consensus 285 -i~~~~~~~m~~~~~~~~~~f 304 (337)
.++++..+|.++.++....+
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~~ 446 (460)
T cd03788 426 TMPLEERRERHRKLREYVRTH 446 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHhC
Confidence 36677777766666655544
No 85
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=76.73 E-value=6.1 Score=38.94 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=58.1
Q ss_pred cHHHhhccCeEEEeeCCC-CCCCCcHHHHHhhCceeEEeeCcccCCCCCCCC---CCceEEEecCCChhhHHHHHcCC--
Q 038832 212 NYTQLMGQSKFCLCPSGY-EVASPRLVESIYSACVPVIISDHYVLPFSDVLD---WRQFSVHIPVEKIPEIKKILQGI-- 285 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~id---w~~~sv~v~~~~~~~l~~~L~~i-- 285 (337)
+..+.++.|..|+++... .....-+.|||++|| |||.++... -+.+..+ -..+.+ +..|..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 467778999987775332 123455999999998 888875421 1222211 123333 344555555555442
Q ss_pred CHHHHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHHH
Q 038832 286 SVEEYLEKQKRVVQVQRHFLMNRPAKPFDLMHMVMHSVW 324 (337)
Q Consensus 286 ~~~~~~~m~~~~~~~~~~f~~~~~~~~~daf~~~l~~l~ 324 (337)
+++...+|.++.+...+.. .+|.+.++..+.
T Consensus 388 ~~~~~~~m~~~a~~~~~~~--------~~~~~~~~~~l~ 418 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQN--------QGALQRTLQLLE 418 (425)
T ss_pred CHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHH
Confidence 4666777877776654332 255666666554
No 86
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=71.01 E-value=6 Score=37.80 Aligned_cols=83 Identities=12% Similarity=0.207 Sum_probs=51.0
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc-ccCC-----CCC-CCCCCceEEEecCCC--hhhHHHHH
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH-YVLP-----FSD-VLDWRQFSVHIPVEK--IPEIKKIL 282 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lP-----f~~-~idw~~~sv~v~~~~--~~~l~~~L 282 (337)
++.+.|..+..+++..| ..-++|||++|+ |||+... .... ..+ +.+ ....+.++.++ ...|.+.+
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHH
Confidence 57788999999998766 234999999998 5554331 1110 012 233 34567777766 55665555
Q ss_pred cCC--CHHHHHHHHHHHHHh
Q 038832 283 QGI--SVEEYLEKQKRVVQV 300 (337)
Q Consensus 283 ~~i--~~~~~~~m~~~~~~~ 300 (337)
+.+ +++...+|+++.++.
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 319 LELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HHHHcCHHHHHHHHHHHHhc
Confidence 543 255667777765544
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=70.36 E-value=11 Score=40.68 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=58.6
Q ss_pred eEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCC------CHHHHHHHH
Q 038832 221 KFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGI------SVEEYLEKQ 294 (337)
Q Consensus 221 ~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i------~~~~~~~m~ 294 (337)
..+++|.=..+...-+.|||++|| |||.++.=-+ .++|.-..-.+.|+..|...+.+.|..+ +++.+.+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777666777888999999999 5555553211 2344445567778888887766665532 577788888
Q ss_pred HHHHH-hhhhceecC
Q 038832 295 KRVVQ-VQRHFLMNR 308 (337)
Q Consensus 295 ~~~~~-~~~~f~~~~ 308 (337)
+++++ +.++|.|..
T Consensus 722 ~~a~~rV~~~FSW~~ 736 (784)
T TIGR02470 722 QGGLQRIYEKYTWKI 736 (784)
T ss_pred HHHHHHHHHhCCHHH
Confidence 88654 678999964
No 88
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.89 E-value=15 Score=34.73 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=51.8
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcc-------cCCCCCCCCCCceEEEecCC--ChhhHHHH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHY-------VLPFSDVLDWRQFSVHIPVE--KIPEIKKI 281 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~-------~lPf~~~idw~~~sv~v~~~--~~~~l~~~ 281 (337)
.+..+.|+.+...+++.|. .-+.|||.+|+ |||+.+.- ..+.+.+.+ ....+.++.. +..++.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHH
Confidence 3677889999999987662 33899999998 56654321 011111222 4556677665 66666665
Q ss_pred HcCC--CHHHHHHHHHHHHHh
Q 038832 282 LQGI--SVEEYLEKQKRVVQV 300 (337)
Q Consensus 282 L~~i--~~~~~~~m~~~~~~~ 300 (337)
|+.+ +++...+|+++.+..
T Consensus 318 i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 5543 356667777766543
No 89
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=68.56 E-value=23 Score=35.82 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=57.4
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCcee----EEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC-
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVP----VIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG- 284 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~- 284 (337)
..+....++.+.-|++|.-......-..|||++|+ | ||+++.--.+ +.+. -++.|+..|...+.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 45678889999999987755555677999999997 7 8888743211 1232 3678888888876665543
Q ss_pred --CCHHHHHHHHHHHHHh
Q 038832 285 --ISVEEYLEKQKRVVQV 300 (337)
Q Consensus 285 --i~~~~~~~m~~~~~~~ 300 (337)
.++++..++.+++++.
T Consensus 420 L~~~~~er~~r~~~~~~~ 437 (456)
T TIGR02400 420 LTMPLEEREERHRAMMDK 437 (456)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 3566655555555443
No 90
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=63.79 E-value=19 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.3
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEee
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIIS 250 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~ 250 (337)
.+..+.|+.|...++..|.+ ++|++.+| +|+|+-
T Consensus 233 ~~m~~lm~~aDl~Is~~G~T-----~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 233 ENMAELMNEADLAIGAAGST-----SWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHHCCEEEECCchH-----HHHHHHcC-CCEEEE
Confidence 35789999999999987732 99999999 677653
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=63.54 E-value=60 Score=32.96 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc
Q 038832 214 TQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH 252 (337)
Q Consensus 214 ~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 252 (337)
.+.++.++..+.|--......-+.|||++|+ |||..|.
T Consensus 295 ~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~ 332 (462)
T PLN02846 295 DPLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH 332 (462)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecC
Confidence 3566677766666555455677999999997 7888874
No 92
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=62.50 E-value=15 Score=32.90 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=50.0
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCC--HH
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGIS--VE 288 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~--~~ 288 (337)
.+..+.++.+...+.|.-......-+.||+++| +|||.++.- -..+.+.=....+.+...+...+.+.+..+- .+
T Consensus 268 ~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~--~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 268 EELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG--GIPEVVEDGETGLLVPPGDVEELADALEQLLEDPE 344 (381)
T ss_pred HHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCCC--ChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHH
Confidence 345667887889888843322233399999999 999887642 1222222221222344435555544444432 23
Q ss_pred HHHHHHH-HHHHhhhhceec
Q 038832 289 EYLEKQK-RVVQVQRHFLMN 307 (337)
Q Consensus 289 ~~~~m~~-~~~~~~~~f~~~ 307 (337)
...++.+ ....+.+.|.|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~ 364 (381)
T COG0438 345 LREELGEAARERVEEEFSWE 364 (381)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 3444443 233334566664
No 93
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.34 E-value=11 Score=37.80 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=31.7
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+..++ |...++.+| .+...|.. ..| .|+++++||+++|
T Consensus 8 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADiiii 49 (448)
T PRK14333 8 SYWITTFG--------CQMNKADSE-RMAGILED--MGYQWAEDELQADLVLY 49 (448)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 77887764 777888888 55556666 566 6889999999998
No 94
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=58.39 E-value=14 Score=35.43 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=49.1
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcccCCCCC----CCCCCce------------E--EEecCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHYVLPFSD----VLDWRQF------------S--VHIPVE 273 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~----~idw~~~------------s--v~v~~~ 273 (337)
+..+.++.|..++++.|. -..||+.+|| |||+.... -||.. ......+ + +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 467788889999988653 2459999998 77776432 12220 0101111 1 112333
Q ss_pred ChhhHHHHHcCC--CHHHHHHHHHHHHHhhhhc
Q 038832 274 KIPEIKKILQGI--SVEEYLEKQKRVVQVQRHF 304 (337)
Q Consensus 274 ~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~f 304 (337)
+..+|.+.+..+ +++...+|.++...+.+..
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 444554444433 4666778888877776655
No 95
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.47 E-value=19 Score=36.34 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 21 GPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 21 ~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
||...++.+| .+...|.. ..| .|+++++||+++|
T Consensus 29 GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~AD~~ii 63 (459)
T PRK14338 29 GCQMNVSDSE-RLEAALQG--VGYSPAERPEDADFIVL 63 (459)
T ss_pred CCCCCHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 5777888888 45555665 555 6888999999987
No 96
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.21 E-value=21 Score=36.00 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=30.7
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+-.++ |..+++.+| .+...|.. ..| .|.+|++||+.+|
T Consensus 2 ~~~i~t~G--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADv~ii 43 (455)
T PRK14335 2 TYFFETYG--------CQMNVAESA-SMEQLLLA--RGWTKAVDAETCDVLII 43 (455)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 67777664 777888888 55556665 455 6889999999987
No 97
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.53 E-value=23 Score=35.61 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+-.++ |..+++.+| .+...|.. ..| .|+++++||+++|
T Consensus 8 ~~~i~tlG--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADviii 49 (445)
T PRK14340 8 KFYIHTFG--------CQMNQADSE-IITALLQD--EGYVPAASEEDADIVLL 49 (445)
T ss_pred EEEEEecC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 58887764 777888888 55556665 555 6888999999998
No 98
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.14 E-value=22 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=31.1
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+..++ |..+++.+| .+...|.. ..| .|+++++||+.+|
T Consensus 2 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 2 KAHIITYG--------CQMNEYDTH-LVESELVS--LGAEIVDSVDEADFVLV 43 (440)
T ss_pred eEEEEecC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 67777764 767888888 55556665 566 6888999999988
No 99
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.01 E-value=25 Score=35.35 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=31.9
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCceecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPFAASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~~T~dPeeAdlF~v 57 (337)
|||+..++ |..+++.+| .+...|.. ..|...++++||+.+|
T Consensus 5 ~~~i~tlG--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~ADiiii 45 (446)
T PRK14337 5 TFHIITFG--------CQMNVNDSD-WLARALVA--RGFTEAPEEEARVFIV 45 (446)
T ss_pred EEEEEeeC--------CCCcHHHHH-HHHHHHHH--CCCEECCcCCCCEEEE
Confidence 78888875 777889888 55666766 6776666799999998
No 100
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.73 E-value=22 Score=35.65 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=31.1
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|||+..++ |...++.+| .+...|.. ..| .|+++++||+.+|=
T Consensus 3 ~~~~~t~G--------C~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADv~iiN 45 (439)
T PRK14328 3 KYFIETYG--------CQMNEEDSE-KLAGMLKS--MGYERTENREEADIIIFN 45 (439)
T ss_pred EEEEEEeC--------CCCCHHHHH-HHHHHHHH--CcCEECCCcCcCCEEEEe
Confidence 57777764 777888888 45555655 555 68889999999983
No 101
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=48.30 E-value=27 Score=35.07 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=34.2
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 1 MEKRFRVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 1 m~~~lkIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|--.=|||+..++ |...++.+| .+...|.. ..| .|+++++||+++|=
T Consensus 4 ~~~~~~~~i~t~G--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~~aD~ivin 51 (440)
T PRK14862 4 MTAAPKIGFVSLG--------CPKALVDSE-RILTQLRA--EGYEISPSYDGADLVIVN 51 (440)
T ss_pred CCCCCEEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 3334478888775 777888888 55556665 566 68889999999983
No 102
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.36 E-value=25 Score=35.15 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=31.1
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+..++ |..+++.+| .+...|.. ..| .|+++++||+.+|
T Consensus 2 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~G~~~~~~~~~aDviii 43 (437)
T PRK14331 2 KYYIKTFG--------CQMNFNDSE-KIKGILQT--LGYEPADDWEEADLILV 43 (437)
T ss_pred EEEEEecC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 78888775 767888888 45556665 555 6888999999988
No 103
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.84 E-value=25 Score=35.05 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=30.6
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+-.++ |..+++.+| .+...|+. ..| .|+++++||+++|
T Consensus 3 ~~~i~t~G--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~~AD~vii 44 (418)
T PRK14336 3 GYYLWTIG--------CQMNQAESE-RLGRLFEL--WGYSLADKAEDAELVLV 44 (418)
T ss_pred eEEEEecC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 67777764 777888888 45555655 455 6888999999987
No 104
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=44.97 E-value=25 Score=35.05 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=30.5
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|||+..+ ||..++|.+| .+...|+. ..| .|.++++||+.+|=
T Consensus 1 ~~~~~t~--------GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADviiin 43 (420)
T TIGR01578 1 KVYVETY--------GCTLNNGDSE-IMKNSLAA--YGHELVNNAEEADLAILN 43 (420)
T ss_pred CEEEEec--------CCCCcHHHHH-HHHHHHHH--CCCEECCCcccCCEEEEE
Confidence 4566655 4767888888 55566666 566 68889999999983
No 105
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.94 E-value=97 Score=33.74 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=55.8
Q ss_pred ccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCcee----EEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHc---
Q 038832 211 LNYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVP----VIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQ--- 283 (337)
Q Consensus 211 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~--- 283 (337)
.+....++.+.-|++|.=.....--..|||++|+ | +|+++---.+ +.+ ..-++.|+..|...+.+.+.
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 4678889999999998754445566999999998 5 7777632111 112 34588999888887655443
Q ss_pred CCCHHHHHHHHHHHHHh
Q 038832 284 GISVEEYLEKQKRVVQV 300 (337)
Q Consensus 284 ~i~~~~~~~m~~~~~~~ 300 (337)
.+++++..++.+.+.+.
T Consensus 442 ~m~~~er~~r~~~~~~~ 458 (797)
T PLN03063 442 NMSDEERETRHRHNFQY 458 (797)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 34666655554444443
No 106
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.86 E-value=30 Score=34.61 Aligned_cols=42 Identities=14% Similarity=0.292 Sum_probs=31.9
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|||+..++ |..++|.+| .+...|.. ..| .|+++++||+++|=
T Consensus 5 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aDvviin 47 (444)
T PRK14325 5 KLYIKTYG--------CQMNEYDSS-KMADLLGA--EGYELTDDPEEADLILLN 47 (444)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcCCCCEEEEE
Confidence 78888875 777888888 45556655 555 68889999999983
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=44.31 E-value=66 Score=34.63 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc
Q 038832 214 TQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH 252 (337)
Q Consensus 214 ~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 252 (337)
.+.++.+...+.|--......-+.|||++|| |||..+.
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 3567777766666544455677999999998 7888775
No 108
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.03 E-value=34 Score=35.12 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=25.4
Q ss_pred CCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 21 GPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 21 ~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
||...++.+| .+...|+. ..| .|+++++||+.+|
T Consensus 75 GC~~N~~Dse-~~~~~L~~--~Gy~~~~~~~~ADviii 109 (509)
T PRK14327 75 GCQMNEHDTE-VMAGIFEA--LGYEPTDDTEDADVILL 109 (509)
T ss_pred CCCccHHHHH-HHHHHHHH--CcCEECCCcCCCCEEEE
Confidence 4666788888 55566666 566 5888999999987
No 109
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=42.56 E-value=29 Score=34.57 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=31.4
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|||+..++ |..+++.+| .+...|.. ..| .|+++++||++.|-
T Consensus 1 ~~~~~t~G--------C~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 1 KVYIETYG--------CQMNEADSE-IMAGLLKE--AGYEVTDDPEEADVIIIN 43 (429)
T ss_pred CEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 46666664 777888888 55666666 566 68889999999984
No 110
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.45 E-value=32 Score=34.64 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=29.9
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce--ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF--AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~--~T~dPeeAdlF~v 57 (337)
|||+=.. ||..+.|.+| .+...|.. ..| .|+||+|||+.+|
T Consensus 4 kv~i~T~--------GC~~N~~DSe-~m~~~L~~--~G~~~~~~~~~eADvvii 46 (437)
T COG0621 4 KVYIETL--------GCQMNLYDSE-RMAGLLEA--AGYEELVEDPEEADVVII 46 (437)
T ss_pred eEEEEec--------CCCccHHHHH-HHHHHHHH--cCCccccCCcccCCEEEE
Confidence 5665554 4777889888 45555555 455 8999999999987
No 111
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.15 E-value=33 Score=34.74 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=30.3
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
|||+..+ ||..+++.+| .+...|.. ..| .|.++++||+.+|=
T Consensus 25 ~~~i~t~--------GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADiviiN 67 (467)
T PRK14329 25 KLFIESY--------GCQMNFADSE-IVASILQM--AGYNTTENLEEADLVLVN 67 (467)
T ss_pred EEEEEec--------CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 4666655 4777888887 55566665 555 68889999999983
No 112
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.27 E-value=42 Score=33.84 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=30.3
Q ss_pred cEEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 5 FRVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 5 lkIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
-|||+..+ ||..+++.+| .+...|.. ..| .|.++++||+.+|
T Consensus 11 ~~~~i~t~--------GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADvvii 53 (449)
T PRK14332 11 GKVYIETY--------GCQMNEYDSG-IVSSLMRD--AEYSTSNDPENSDIIFL 53 (449)
T ss_pred CEEEEEec--------CCCCCHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 46666665 4767888888 44456665 555 5789999999988
No 113
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.14 E-value=46 Score=34.07 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=30.6
Q ss_pred cEEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 5 FRVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 5 lkIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
-|+||-.+ +|..+++.+| .+...|.. ..| .|+++++||+++|
T Consensus 14 ~~~~i~T~--------GC~~N~~dse-~~~~~L~~--~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 14 RTYQVRTY--------GCQMNVHDSE-RLAGLLEA--AGYVRAAEGQDADVVVF 56 (502)
T ss_pred CEEEEEec--------CCCCcHHHHH-HHHHHHHH--CCCEECCCcCCCCEEEE
Confidence 45666665 4777888888 55556666 566 5788999999987
No 114
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=37.60 E-value=39 Score=33.81 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=29.9
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCC-ce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKS-PF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S-~~-~T~dPeeAdlF~v 57 (337)
|||+..+ ||..+++.+| .+...|.. . .| .|+++++||+.+|
T Consensus 1 ~~~i~t~--------GC~~N~~dse-~~~~~l~~--~~G~~~~~~~~~aDv~ii 43 (438)
T TIGR01574 1 KLFIQTY--------GCQMNVRDSE-HMAALLTA--KEGYALTEDAKEADVLLI 43 (438)
T ss_pred CeEEEeC--------CCCCcHHHHH-HHHHHHHh--cCCcEECCCcccCCEEEE
Confidence 4566555 4777888887 55666666 5 56 6888999999988
No 115
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=36.63 E-value=40 Score=33.63 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEEc
Q 038832 21 GPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFIP 58 (337)
Q Consensus 21 ~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~vP 58 (337)
+|...++.+| .+...|.. ..| .|.++++||+.+|=
T Consensus 8 GC~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aD~viin 43 (430)
T TIGR01125 8 GCPKNLVDSE-VMLGILRE--AGYEVTPNYEDADYVIVN 43 (430)
T ss_pred CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 4767888887 55555655 555 68889999999983
No 116
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=36.08 E-value=73 Score=29.59 Aligned_cols=108 Identities=19% Similarity=0.353 Sum_probs=59.5
Q ss_pred CCCCeEEEEecCCCchhhHHHHHHhccCC-CCeEEeecc------------C-CcccHHHhhccCeEEEeeCCCCCCCCc
Q 038832 170 NNRSILAFFAGGPHGFVRELLFRYWKHKD-DDIQVHEYL------------P-QTLNYTQLMGQSKFCLCPSGYEVASPR 235 (337)
Q Consensus 170 ~~R~~l~~F~G~~~~~~R~~L~~~~~~~~-~~v~~~~~~------------~-~~~~~~~~~~~S~Fcl~p~G~~~~s~r 235 (337)
..+.+|++|-|.-.+ .+.+.++..+ ..+.+.+.. . ...++.+.|+.|+.+++-.|.+.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t---- 262 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTT---- 262 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHH----
Confidence 345677777765555 3444443322 233333211 0 12468899999999999999753
Q ss_pred HHHHHhhCceeEEeeCc---ccCCCC-CCCCCCceEEEecCCCh--hhHHHHHcCCC
Q 038832 236 LVESIYSACVPVIISDH---YVLPFS-DVLDWRQFSVHIPVEKI--PEIKKILQGIS 286 (337)
Q Consensus 236 l~dal~~GcIPVii~d~---~~lPf~-~~idw~~~sv~v~~~~~--~~l~~~L~~i~ 286 (337)
+.||+.+|+ |+|+-.. ....+. ..+.=....+.++.+++ .+|.+.|+++|
T Consensus 263 ~~Ea~~~g~-P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~ 318 (318)
T PF13528_consen 263 ISEALALGK-PALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERLP 318 (318)
T ss_pred HHHHHHcCC-CEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcCC
Confidence 889999886 6665432 111110 01222334555554443 45666666553
No 117
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=31.14 E-value=31 Score=30.70 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=27.3
Q ss_pred cCeEEEeeCCCCCCCCcHHHHHhhCceeEEee
Q 038832 219 QSKFCLCPSGYEVASPRLVESIYSACVPVIIS 250 (337)
Q Consensus 219 ~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~ 250 (337)
+-+|||+-.|.+..-...|||=..+.|||+-.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 45899999998877778889999999999854
No 118
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=28.77 E-value=1.6e+02 Score=31.63 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=54.1
Q ss_pred cccHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCc---eeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcC--
Q 038832 210 TLNYTQLMGQSKFCLCPSGYEVASPRLVESIYSAC---VPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQG-- 284 (337)
Q Consensus 210 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~Gc---IPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 284 (337)
..+....++.+.-|++|.=.....--..|||++|| =++|++...-- ..++.+ ++.|+..|..++.+.+..
T Consensus 352 ~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~-~~~l~~----~llv~P~d~~~la~ai~~~l 426 (726)
T PRK14501 352 FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA-AAELAE----ALLVNPNDIEGIAAAIKRAL 426 (726)
T ss_pred HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch-hHHhCc----CeEECCCCHHHHHHHHHHHH
Confidence 45688899999999987654445567899999987 23555553110 011121 678888888876665543
Q ss_pred -CCHHHHHHHHHHHHHhhhhcee
Q 038832 285 -ISVEEYLEKQKRVVQVQRHFLM 306 (337)
Q Consensus 285 -i~~~~~~~m~~~~~~~~~~f~~ 306 (337)
.+.++..++.++++.....+.|
T Consensus 427 ~~~~~e~~~r~~~~~~~v~~~~~ 449 (726)
T PRK14501 427 EMPEEEQRERMQAMQERLRRYDV 449 (726)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCH
Confidence 3444433333334433344444
No 119
>PF15582 Imm40: Immunity protein 40
Probab=27.29 E-value=79 Score=29.63 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.1
Q ss_pred cHHHhhccCeEEEeeCCCCCCC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVAS 233 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s 233 (337)
...+++++||||+|--......
T Consensus 261 ~~Y~LF~DSTF~F~NiNG~~~~ 282 (327)
T PF15582_consen 261 KMYDLFCDSTFCFCNINGTHTR 282 (327)
T ss_pred HHHHHhhhceEEEEEecCceee
Confidence 5778999999999976555543
No 120
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.78 E-value=43 Score=22.80 Aligned_cols=39 Identities=33% Similarity=0.644 Sum_probs=27.3
Q ss_pred ccCeEEEeeCCC-CCCCCcHHHHHhhCceeEEeeCcccCCCCC
Q 038832 218 GQSKFCLCPSGY-EVASPRLVESIYSACVPVIISDHYVLPFSD 259 (337)
Q Consensus 218 ~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~ 259 (337)
-+|.||+.|--. +..|.|-|-.-..||----+. .||.++
T Consensus 7 fqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 7 FQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 478999999764 455788888888899644332 456554
No 121
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=25.72 E-value=1.9e+02 Score=29.59 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=33.1
Q ss_pred cHHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeC
Q 038832 212 NYTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISD 251 (337)
Q Consensus 212 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 251 (337)
-+.+.++.|.+=|+|-=..|..---..||+.|||||+-..
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t 400 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET 400 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence 3667788999988887777777778899999999999765
No 122
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.34 E-value=87 Score=31.28 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=30.0
Q ss_pred EEEEecCCCCCCCCCCCCCCccchHHHHHHHHhcCCCce-ecCCcCCceEEEE
Q 038832 6 RVWAYKEGEQPLFHRGPMNDIYSIEGQFIDELESDKSPF-AASHPDDAVAYFI 57 (337)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~~~~~l~~~~S~~-~T~dPeeAdlF~v 57 (337)
|||+-.++ |..+++.+| .+...|.. ..| .|+++++||++.|
T Consensus 2 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aDlvvi 43 (434)
T PRK14330 2 KFYIKTFG--------CQMNENDSE-TMAGLLKK--EGFEPASNPEEADVVII 43 (434)
T ss_pred eEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 67777764 767888888 45555655 444 5788999999999
No 123
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=24.36 E-value=1.5e+02 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.1
Q ss_pred HHHhhccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCcc
Q 038832 213 YTQLMGQSKFCLCPSGYEVASPRLVESIYSACVPVIISDHY 253 (337)
Q Consensus 213 ~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~ 253 (337)
|...--+.+..||.+|.-........|...|..-|||.++-
T Consensus 41 ~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 41 FEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred cCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 33333357888898887544456777899999999997553
No 124
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.34 E-value=1e+02 Score=18.79 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=18.5
Q ss_pred CChhhHHHHHcC--CCHHHHHHHHHHHH
Q 038832 273 EKIPEIKKILQG--ISVEEYLEKQKRVV 298 (337)
Q Consensus 273 ~~~~~l~~~L~~--i~~~~~~~m~~~~~ 298 (337)
+.+..|.+.+.+ |+++++.++++++.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 345556666655 89999999988764
No 125
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=23.09 E-value=54 Score=21.33 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=12.5
Q ss_pred CCCCccCCCceeecCc
Q 038832 138 SSEGFHPVKDVSMPEI 153 (337)
Q Consensus 138 ~~~~frp~~DV~iP~~ 153 (337)
.+.+++||.|++||+.
T Consensus 12 tPanW~pGd~~ivpp~ 27 (40)
T PF10417_consen 12 TPANWKPGDDVIVPPP 27 (40)
T ss_dssp BCTTTCTTSGEBE-TT
T ss_pred cCcCCCCCCCeEcCCC
Confidence 3667999999999975
No 126
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=23.05 E-value=29 Score=33.30 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCCCCCCCcHHHHHhhCceeEEeeCcccCCCCCCCCCCceEEEecCCChhhHHHHHcCCCHHHHHHHHHHHHHh
Q 038832 227 SGYEVASPRLVESIYSACVPVIISDHYVLPFSDVLDWRQFSVHIPVEKIPEIKKILQGISVEEYLEKQKRVVQV 300 (337)
Q Consensus 227 ~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~ 300 (337)
.|-++..+.+.+.+.---|+|=+|---.--|.|+++++++-|...-+....|.++=|+++++++.++.+.+--+
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvI 218 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVI 218 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEE
Confidence 45667778899999888888888876667789999999999999999998888888999999888887765543
No 127
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=20.00 E-value=1.9e+02 Score=22.72 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.8
Q ss_pred ccCeEEEeeCCCCCCCCcHHHHHhhCceeEEeeCc
Q 038832 218 GQSKFCLCPSGYEVASPRLVESIYSACVPVIISDH 252 (337)
Q Consensus 218 ~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 252 (337)
.+-|..||-+|..........|..+|..-|||.++
T Consensus 45 ~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~ 79 (126)
T cd00538 45 VKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNN 79 (126)
T ss_pred ccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEEC
Confidence 35788888888644345677899999999999654
Done!