BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038833
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C-
Terminal Domain Containing A Kow Motif Kin17
Length = 127
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 5 EKVKEKMNTQDYWLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKYHV----------LR 54
E+ K++ DYWL IIV++++K +K Y K+K IV++VIDKY L+
Sbjct: 2 EEEKKRTARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKLK 60
Query: 55 ADHDELETVIPQI-EGLVIVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDY 113
D LETVIP + ++++NG Y+G+ L ++ F A IE G GR + I Y
Sbjct: 61 LDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQY 120
Query: 114 EDICKLA 120
EDI KLA
Sbjct: 121 EDISKLA 127
>pdb|1WA9|A Chain A, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
pdb|1WA9|B Chain B, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
Length = 368
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 21 GIIVEVMSKAFADKGYCKQKGIVRKVIDKYHVLRADHDELETVIPQIEGLVIVNGAYQGS 80
GII V S A + GY Q I R ++D YH H++L +V+ + V+ G G+
Sbjct: 168 GIISHVDSAAVSALGYLPQDLIGRSIMDFYH-----HEDL-SVMKETYETVMKKGQTAGA 221
Query: 81 NARLLGVDNDKFCAK 95
+ FC+K
Sbjct: 222 S----------FCSK 226
>pdb|3MCP|A Chain A, Crystal Structure Of Glucokinase (Bdi_1628) From
Parabactero Distasonis Atcc 8503 At 3.00 A Resolution
Length = 366
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 58 DELETVIPQIEGLVIVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRV 107
D L + I I+GL+++ G G++ +L V + A+T G GR+
Sbjct: 249 DALASAITLIDGLIVIGGGLSGASKYILPVLLKEXNAQTGXXDGARFGRL 298
>pdb|3RTY|A Chain A, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|B Chain B, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|C Chain C, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|D Chain D, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|E Chain E, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|F Chain F, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|G Chain G, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|H Chain H, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
Length = 339
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 21 GIIVEVMSKAFADKGYCKQKGIVRKVIDKYHVLRADHDELETVIPQIEGLVIVNGAYQGS 80
GII V S A + GY Q I R ++D YH H++L +V+ + V+ G G+
Sbjct: 164 GIISHVDSAAVSALGYLPQDLIGRSIMDFYH-----HEDL-SVMKETYETVMKKGQTAGA 217
Query: 81 NARLLGVDNDKFCAK 95
+ FC+K
Sbjct: 218 S----------FCSK 222
>pdb|3GEC|A Chain A, Crystal Structure Of A Tandem Pas Domain Fragment Of
Drosophila Period
Length = 312
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 21 GIIVEVMSKAFADKGYCKQKGIVRKVIDKYHVLRADHDELETVIPQIEGLVIVNGAYQGS 80
GII V S A + GY Q I R ++D YH H++L +V+ + V+ G G+
Sbjct: 173 GIISHVDSAAVSALGYLPQDLIGRSIMDFYH-----HEDL-SVMKETYETVMKKGQTAGA 226
Query: 81 NARLLGVDNDKFCAK 95
+ FC+K
Sbjct: 227 S----------FCSK 231
>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|3UKO|B Chain B, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|4GL4|A Chain A, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
pdb|4GL4|B Chain B, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
Length = 378
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 69 GLVIVNGAYQGSNARLLGVDNDKFCAKTKIEKGVND 104
GL + GA +R++G+D D +T + GVN+
Sbjct: 206 GLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,649,157
Number of Sequences: 62578
Number of extensions: 143299
Number of successful extensions: 299
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)