Query 038833
Match_columns 120
No_of_seqs 103 out of 219
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckk_A KIN17; beta barrel, rib 100.0 8.5E-41 2.9E-45 241.0 12.1 112 8-120 5-127 (127)
2 1nz9_A Transcription antitermi 97.6 0.00029 1E-08 43.1 6.7 53 64-118 4-57 (58)
3 2e6z_A Transcription elongatio 97.6 7.4E-05 2.5E-09 46.5 3.9 52 64-119 7-59 (59)
4 3p8b_B Transcription antitermi 97.2 0.00098 3.4E-08 47.7 6.9 53 65-119 92-145 (152)
5 2e70_A Transcription elongatio 96.9 0.0023 7.8E-08 41.5 6.0 47 65-117 18-65 (71)
6 2ftc_N Mitochondrial ribosomal 96.4 0.0048 1.6E-07 42.0 5.0 30 68-97 1-31 (96)
7 3j21_U 50S ribosomal protein L 96.4 0.0033 1.1E-07 44.5 4.2 31 66-96 47-78 (121)
8 3u5e_Y L33, YL33, 60S ribosoma 96.4 0.0031 1.1E-07 45.0 3.9 32 66-97 51-83 (127)
9 1vq8_T 50S ribosomal protein L 96.4 0.0043 1.5E-07 43.9 4.6 33 66-98 44-77 (120)
10 2jvv_A Transcription antitermi 96.3 0.0064 2.2E-07 44.4 5.3 51 66-118 129-180 (181)
11 2zjr_R 50S ribosomal protein L 96.2 0.0052 1.8E-07 43.0 4.1 33 66-98 17-50 (115)
12 2zkr_t 60S ribosomal protein L 96.2 0.0059 2E-07 44.5 4.5 34 64-97 47-83 (145)
13 3iz5_Y 60S ribosomal protein L 96.1 0.0058 2E-07 44.8 4.3 31 66-96 50-81 (150)
14 4a17_S RPL26, 60S ribosomal pr 96.1 0.0062 2.1E-07 43.9 4.3 31 66-96 50-81 (135)
15 3v2d_Y 50S ribosomal protein L 96.0 0.0068 2.3E-07 42.2 4.0 31 66-96 8-39 (110)
16 3r8s_U 50S ribosomal protein L 95.8 0.012 4.1E-07 40.4 4.5 30 66-96 5-35 (102)
17 2do3_A Transcription elongatio 95.4 0.041 1.4E-06 35.4 5.6 26 66-91 19-45 (69)
18 2xhc_A Transcription antitermi 94.9 0.046 1.6E-06 44.5 6.1 51 66-118 300-351 (352)
19 1m1h_A Transcription antitermi 92.8 0.02 6.8E-07 44.6 0.0 53 62-118 192-247 (248)
20 3bbo_W Ribosomal protein L24; 92.3 0.013 4.5E-07 44.4 -1.5 31 66-96 70-101 (191)
21 2jz2_A SSL0352 protein; SH3-li 92.2 0.51 1.7E-05 29.9 5.9 46 18-66 2-58 (66)
22 3izc_N 60S ribosomal protein R 86.7 0.86 2.9E-05 32.7 4.4 47 66-116 16-63 (138)
23 3h8z_A FragIle X mental retard 81.2 11 0.00038 26.4 8.2 74 20-100 4-100 (128)
24 3pnw_C Tudor domain-containing 77.8 9.4 0.00032 24.1 6.4 59 57-119 3-70 (77)
25 3kbg_A 30S ribosomal protein S 77.3 4.6 0.00016 30.8 5.5 39 52-90 125-165 (213)
26 3iz6_D 40S ribosomal protein S 76.7 5.4 0.00018 31.4 5.9 38 52-89 161-200 (265)
27 1qp2_A Protein (PSAE protein); 73.7 8.2 0.00028 24.6 5.1 48 18-68 2-66 (70)
28 3j20_E 30S ribosomal protein S 72.6 5.4 0.00018 31.0 4.9 38 52-89 165-204 (243)
29 2qqr_A JMJC domain-containing 71.0 9.8 0.00034 26.4 5.5 79 30-118 15-112 (118)
30 2xzm_W 40S ribosomal protein S 70.4 9.3 0.00032 29.9 5.8 35 54-88 165-201 (260)
31 4a4f_A SurviVal of motor neuro 68.1 17 0.00058 21.8 6.8 52 63-118 7-60 (64)
32 3u5c_E RP5, S7, YS6, 40S ribos 66.6 5.4 0.00018 31.3 3.8 38 52-89 161-200 (261)
33 2d9t_A Tudor domain-containing 65.5 22 0.00076 22.2 6.4 52 64-119 9-62 (78)
34 3iz5_N 60S ribosomal protein L 65.1 4.7 0.00016 28.7 2.9 26 66-91 8-34 (134)
35 4hcz_A PHD finger protein 1; p 64.6 22 0.00074 21.8 6.7 49 66-119 5-54 (58)
36 4a18_N RPL27, ribosomal protei 64.0 11 0.00039 27.0 4.8 25 66-90 6-31 (144)
37 3j21_5 50S ribosomal protein L 62.1 5.8 0.0002 25.8 2.7 27 66-92 5-32 (83)
38 4a18_F RPL14; ribosome, eukary 61.7 8.2 0.00028 27.1 3.6 25 67-91 9-34 (126)
39 1nz9_A Transcription antitermi 60.4 17 0.00059 21.2 4.5 27 18-49 5-31 (58)
40 2joy_A 50S ribosomal protein L 59.1 7.3 0.00025 25.8 2.9 26 66-91 5-31 (96)
41 3izc_N 60S ribosomal protein R 57.3 15 0.00051 26.2 4.4 28 17-49 14-41 (138)
42 1g5v_A SurviVal motor neuron p 56.6 38 0.0013 21.9 6.9 51 64-118 10-62 (88)
43 2equ_A PHD finger protein 20-l 54.8 37 0.0013 21.3 5.6 51 63-119 8-59 (74)
44 2ckk_A KIN17; beta barrel, rib 51.2 25 0.00084 24.3 4.7 44 67-116 17-66 (127)
45 3s9x_A ASCH domain; MCSG, PSI- 50.8 21 0.00073 25.8 4.4 36 63-118 72-108 (159)
46 2do3_A Transcription elongatio 50.5 28 0.00096 21.9 4.4 30 16-50 16-45 (69)
47 1qp2_A Protein (PSAE protein); 49.9 47 0.0016 21.1 5.5 52 66-117 3-59 (70)
48 2eqj_A Metal-response element- 49.6 45 0.0016 20.8 6.3 48 66-118 15-63 (66)
49 3dcl_A TM1086; SAD, structural 49.2 11 0.00038 29.8 2.8 34 67-100 86-120 (284)
50 1mhn_A SurviVal motor neuron p 48.2 39 0.0013 19.7 6.1 51 65-119 4-56 (59)
51 3fdr_A Tudor and KH domain-con 46.1 53 0.0018 20.6 5.7 52 63-119 26-79 (94)
52 3p8b_B Transcription antitermi 45.0 33 0.0011 23.6 4.6 29 17-50 91-119 (152)
53 1ib8_A Conserved protein SP14. 44.4 49 0.0017 23.5 5.5 48 67-118 103-155 (164)
54 2e5p_A Protein PHF1, PHD finge 40.3 62 0.0021 20.4 4.8 35 80-119 26-60 (68)
55 1t62_A Conserved hypothetical 39.8 41 0.0014 24.4 4.5 35 63-117 64-99 (166)
56 1rl2_A Protein (ribosomal prot 35.8 47 0.0016 23.3 4.1 24 77-102 97-120 (137)
57 1te7_A Hypothetical UPF0267 pr 35.7 41 0.0014 21.9 3.7 35 64-118 32-68 (103)
58 4a18_E RPL6; ribosome, eukaryo 34.2 41 0.0014 25.2 3.8 25 67-91 47-72 (191)
59 2eqk_A Tudor domain-containing 33.9 97 0.0033 20.1 5.6 51 62-117 19-71 (85)
60 2ftc_B Mitochondrial ribosomal 33.7 48 0.0016 23.3 3.9 24 77-102 84-107 (136)
61 3s6w_A Tudor domain-containing 33.2 68 0.0023 18.2 5.9 49 66-118 3-53 (54)
62 1jb0_E Photosystem 1 reaction 32.9 96 0.0033 19.8 5.9 35 66-100 2-42 (75)
63 2oug_A Transcriptional activat 32.1 0.14 4.8E-06 36.3 -9.8 32 64-96 109-141 (162)
64 2jvv_A Transcription antitermi 31.9 80 0.0028 22.2 5.0 30 15-49 125-154 (181)
65 1z85_A Hypothetical protein TM 31.0 38 0.0013 25.5 3.2 39 57-96 33-73 (234)
66 2diq_A Tudor and KH domain-con 30.8 81 0.0028 20.4 4.5 52 63-119 31-84 (110)
67 4e8b_A Ribosomal RNA small sub 30.3 35 0.0012 25.8 2.9 40 57-96 25-66 (251)
68 1vhy_A Hypothetical protein HI 30.2 40 0.0014 25.5 3.3 41 57-99 27-69 (257)
69 3iz5_N 60S ribosomal protein L 30.1 34 0.0012 24.1 2.6 28 17-49 6-33 (134)
70 2e5q_A PHD finger protein 19; 29.7 75 0.0026 19.7 3.8 36 79-119 23-58 (63)
71 4a17_A RPL8; eukaryotic riboso 28.4 66 0.0023 25.1 4.2 25 78-102 131-155 (264)
72 2m0o_A PHD finger protein 1; t 28.2 1.2E+02 0.0042 19.5 5.9 46 67-117 29-75 (79)
73 1giy_D 50S ribosomal protein L 26.7 72 0.0025 23.4 4.0 23 78-102 98-120 (178)
74 2egv_A UPF0088 protein AQ_165; 26.1 41 0.0014 25.0 2.6 39 56-96 20-60 (229)
75 2xdp_A Lysine-specific demethy 25.5 97 0.0033 21.4 4.3 48 63-118 63-113 (123)
76 3kw2_A Probable R-RNA methyltr 25.1 52 0.0018 25.0 3.1 39 57-95 24-64 (257)
77 1vhk_A Hypothetical protein YQ 24.7 60 0.002 24.7 3.3 40 57-96 28-69 (268)
78 3iz5_B 60S ribosomal protein L 23.7 64 0.0022 25.2 3.3 33 78-115 130-162 (261)
79 3v2d_D 50S ribosomal protein L 21.6 1E+02 0.0034 24.2 4.1 31 78-115 159-189 (276)
80 3j21_B 50S ribosomal protein L 21.3 1E+02 0.0034 23.7 4.0 31 78-115 125-155 (239)
81 3gox_A Restriction endonucleas 21.2 1.7E+02 0.0057 22.0 5.0 43 26-69 19-71 (200)
82 2hc5_A ORF 99, hypothetical pr 21.0 38 0.0013 23.1 1.4 34 85-119 60-93 (117)
83 2vxe_A CG10686-PA; EDC3, CAR-1 20.8 1.8E+02 0.0063 18.9 4.9 33 64-96 9-42 (88)
84 3p8d_A Medulloblastoma antigen 20.2 1.6E+02 0.0056 18.1 6.4 47 66-118 8-55 (67)
No 1
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=100.00 E-value=8.5e-41 Score=241.00 Aligned_cols=112 Identities=43% Similarity=0.748 Sum_probs=102.9
Q ss_pred hhccCCCCCcccCCcEEEEEeccCCCccceeeeEEEEEecCCc----------eEEEeecCceeeecCCCCCeE-EEecC
Q 038833 8 KEKMNTQDYWLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKY----------HVLRADHDELETVIPQIEGLV-IVNGA 76 (120)
Q Consensus 8 k~~~~~~~~Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~----------~~~~v~q~~LETViP~~G~~V-Vv~G~ 76 (120)
|+++++.++||+|+|+|||+++++++| ||++||+|++|.+++ +.++|+|+|||||||+.|++| ||+|+
T Consensus 5 k~~~~~~~~Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP~~g~~V~Iv~G~ 83 (127)
T 2ckk_A 5 KKRTARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGG 83 (127)
T ss_dssp ---CCCCSCCCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCCCTTCEEEECSST
T ss_pred ccccCCCCCcccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecCCCCCEEEEEecc
Confidence 447889999999999999999999998 999999999998765 567999999999999999999 99999
Q ss_pred CCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccccC
Q 038833 77 YQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKLA 120 (120)
Q Consensus 77 ~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~~ 120 (120)
|||++|+|+++|.++|+|.|+|++++.+++.++.++|||||||+
T Consensus 84 ~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 84 YRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp TTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred cCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence 99999999999999999999999988778778789999999986
No 2
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=97.57 E-value=0.00029 Score=43.08 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=40.7
Q ss_pred cCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 64 IPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 64 iP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
-...|++| |+.|++.|..|++.++|.++..+.|.+.--. ....+ .++|+++-+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~G-r~t~v-~l~~~~vek 57 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFG-RETPV-ELDFSQVVK 57 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSS-SEEEE-EECGGGEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCC-CEEEE-EECHHHEEE
Confidence 34789999 9999999999999999999888877666411 22334 488888755
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=7.4e-05 Score=46.46 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=40.5
Q ss_pred cCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 64 IPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 64 iP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
-+.+|+.| |+.|+++|..|++.++|.+ .+.|.+.-.. ..+.+ .++|.++.|+
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg-~~tpv-el~~~qv~K~ 59 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHED-LKDML-EFPAQELRKY 59 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSS-CCSCE-EEETTTEEEC
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecC-CCceE-EEcHHHEEEC
Confidence 35789999 9999999999999999986 5767665322 23456 4999998875
No 4
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.22 E-value=0.00098 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 65 PQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 65 P~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
+.+|+.| |+.|+++|..|++.++|.++..+.|.+.--. ....+ .++|++|-++
T Consensus 92 ~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~g-r~tpv-el~~~~v~~i 145 (152)
T 3p8b_B 92 LEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAI-VPIPV-TIKGDYVRLI 145 (152)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCS-SCCEE-EEEGGGEEEE
T ss_pred CCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecc-eeEEE-EECHHHEEEe
Confidence 3689999 9999999999999999999999999887632 23345 4999988654
No 5
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.0023 Score=41.52 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=38.3
Q ss_pred CCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccc
Q 038833 65 PQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDIC 117 (120)
Q Consensus 65 P~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvc 117 (120)
|.+|..| |..|+|+|..|.+.+..... |.|+|.+ ..++|. ++.+++.
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~~--~RVELhs---~~K~Vt-V~r~~l~ 65 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATEST--ARVELHS---TCQTIS-VDRQRLT 65 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSSC--EEEEESS---SCCEEE-ECTTTEE
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCCe--EEEEecC---CceEEE-EEhhhcc
Confidence 4579999 99999999999999999887 8888887 346563 7777664
No 6
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=96.44 E-value=0.0048 Score=41.97 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCeE-EEecCCCCceEEEEEEeCCccEEEEE
Q 038833 68 EGLV-IVNGAYQGSNARLLGVDNDKFCAKTK 97 (120)
Q Consensus 68 G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~ 97 (120)
|+.| ||.|.++|..|++++++.+++.+.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 7899 99999999999999999999888763
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.41 E-value=0.0033 Score=44.51 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=29.0
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+.||.| ||.|.++|..|++++++.+++.+.|
T Consensus 47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~V 78 (121)
T 3j21_U 47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYV 78 (121)
T ss_dssp CSSSEEEECSSSCSSEEEEEEEEETTTTEEEE
T ss_pred ccCCEEEEeecCCCCcEeEEEEEEecCCEEEE
Confidence 689999 9999999999999999999988876
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=96.37 E-value=0.0031 Score=45.02 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=29.5
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTK 97 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~ 97 (120)
..|+.| ||.|.++|..|++++++.+++.+.|+
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 689999 99999999999999999999888763
No 9
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.37 E-value=0.0043 Score=43.86 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=30.2
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKI 98 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l 98 (120)
+.|+.| ||.|.++|..|++++++.+++.+.|+-
T Consensus 44 kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg 77 (120)
T 1vq8_T 44 NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED 77 (120)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT
T ss_pred cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC
Confidence 689999 999999999999999999999888743
No 10
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=96.27 E-value=0.0064 Score=44.42 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=37.8
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
..|++| |+.|++.|..|++.++|.++..+.|.+.- -+....+ .++|++|-+
T Consensus 129 ~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~i-fgr~t~v-el~~~qvek 180 (181)
T 2jvv_A 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI-FGRATPV-ELDFSQVEK 180 (181)
T ss_dssp CTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEE-TTEEEEE-EECTTTEEE
T ss_pred CCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEE-CCCCEEE-EECHHHEEE
Confidence 589999 99999999999999999877666554442 1122344 488888765
No 11
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=96.17 E-value=0.0052 Score=43.03 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=30.2
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKI 98 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l 98 (120)
+.|+.| ||.|.++|..|++++++.++..+.|+-
T Consensus 17 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG 50 (115)
T 2zjr_R 17 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG 50 (115)
T ss_dssp CTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred cCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC
Confidence 689999 999999999999999999998888743
No 12
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=96.16 E-value=0.0059 Score=44.45 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=30.7
Q ss_pred cC-CCCCeE-EEecCCCCce-EEEEEEeCCccEEEEE
Q 038833 64 IP-QIEGLV-IVNGAYQGSN-ARLLGVDNDKFCAKTK 97 (120)
Q Consensus 64 iP-~~G~~V-Vv~G~~rG~~-g~L~~~d~~~~~~~V~ 97 (120)
+| ..|+.| ||.|.++|.. |++++++.+++.+.|+
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 45 689999 9999999999 9999999999888774
No 13
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=96.11 E-value=0.0058 Score=44.75 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=29.0
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+.|+.| ||.|.++|..|++++++.+++.+.|
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~V 81 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHV 81 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEE
Confidence 689999 9999999999999999999988876
No 14
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=96.10 E-value=0.0062 Score=43.89 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
..|+.| ||.|.++|..|.+++++.+++.+.|
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 689999 9999999999999999999988876
No 15
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=96.00 E-value=0.0068 Score=42.19 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+.|+.| ||.|.++|..|++++++.++..+.|
T Consensus 8 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViV 39 (110)
T 3v2d_Y 8 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIV 39 (110)
T ss_dssp CTTSEEEECSSTTTTCEEEEEEEEGGGTEEEE
T ss_pred CCCCEEEEeEcCCCCeEeEEEEEECCCCEEEE
Confidence 679999 9999999999999999999888876
No 16
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=95.79 E-value=0.012 Score=40.37 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+.|+.| ||.|.++|..|++++++.+ ..+.|
T Consensus 5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViV 35 (102)
T 3r8s_U 5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIV 35 (102)
T ss_dssp CSSCEEEECSSSSTTCEEEEEEEETT-TEEEE
T ss_pred cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEE
Confidence 579999 9999999999999999998 77766
No 17
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.37 E-value=0.041 Score=35.37 Aligned_cols=26 Identities=15% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDK 91 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~ 91 (120)
++|+.| |+.|.|.|.+|.++.++.+-
T Consensus 19 ~~GDHVkVi~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 19 KMGDHVKVIAGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp CTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred cCCCeEEEeccEEcCceEEEEEEeCCE
Confidence 579999 99999999999999999775
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.95 E-value=0.046 Score=44.53 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=38.8
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
.+|+.| |+.|++.|..|++.++|.++..+.|.+.-= +....+ .++|++|-+
T Consensus 300 ~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~if-GR~tpV-eL~~~qVek 351 (352)
T 2xhc_A 300 KVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIF-GRETPV-VLHVSEVEK 351 (352)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEET-TEEEEE-EEEGGGEEC
T ss_pred CCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEEC-CCcEEE-EEchHHEEE
Confidence 689999 999999999999999998886676655531 012334 488888765
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=92.77 E-value=0.02 Score=44.58 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred eecCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEE--EccCCCCCceEeeeccccccc
Q 038833 62 TVIPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTK--IEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 62 TViP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~--l~~g~~~~~~v~~~~yddvck 118 (120)
.+-+..|+.| |+.|++.|..|++.++|.++..+.|. +.. ....+ .++|+.|-|
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifg---r~tpv-~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFG---RMTPV-ELDFDQVEK 247 (248)
T ss_dssp ------------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCC---CcEEE-EEcHHHEEe
Confidence 4455799999 99999999999999999877555554 443 22335 488887755
No 20
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=92.30 E-value=0.013 Score=44.39 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+.||.| ||.|.++|..|++++++.++..+.|
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rViV 101 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKHNSTVII 101 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSSSCCCCC
T ss_pred ecCCEEEEeecCCCCceEEEEEEECCCCEEEE
Confidence 479999 9999999999999999988877765
No 21
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=92.16 E-value=0.51 Score=29.90 Aligned_cols=46 Identities=33% Similarity=0.515 Sum_probs=38.2
Q ss_pred ccCCcEEEEEeccCCCccceeeeEEEEEecCCc-----------eEEEeecCceeeecCC
Q 038833 18 LFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKY-----------HVLRADHDELETVIPQ 66 (120)
Q Consensus 18 l~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~-----------~~~~v~q~~LETViP~ 66 (120)
+.||..|+++|- .+ -||.=.|.|..|.++. +++.+.-+.||.+-+.
T Consensus 2 ilPG~~V~V~np--~~-~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~ 58 (66)
T 2jz2_A 2 IFPGATVRVTNV--DD-TYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI 58 (66)
T ss_dssp CCTTCEEEECCT--TS-TTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCC
T ss_pred ccCCCEEEEeCC--CC-cccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceecccc
Confidence 568999999764 34 7999999999999977 6888999999987653
No 22
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=86.68 E-value=0.86 Score=32.70 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDI 116 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddv 116 (120)
.+|.-| ++.|.|.|..+.++++-.+++ |.| +||.++-.-..++|.++
T Consensus 16 e~GrVV~i~~Gr~aGk~avIV~iiD~~r-VLV---DGp~~gV~R~~~n~khL 63 (138)
T 3izc_N 16 EVGRVVLIKKGQSAGKLAAIVEIIDQKK-VLI---DGPKAGVPRQAINLGQV 63 (138)
T ss_dssp STTEEEECCSCSSSCCEEEEEEECSSSE-EEE---ECSSSSCCCEEEECSSS
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEecCCE-EEE---EcCCCCcccceechhHe
Confidence 467667 789999999999999976663 433 56643321123455444
No 23
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=81.24 E-value=11 Score=26.37 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=48.1
Q ss_pred CCcEEEEEeccCCCccceeeeEEEEEecCCce----------EEEeecCceeeecC-------CCCCeE-EEe-cCC---
Q 038833 20 KGIIVEVMSKAFADKGYCKQKGIVRKVIDKYH----------VLRADHDELETVIP-------QIEGLV-IVN-GAY--- 77 (120)
Q Consensus 20 ~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~~----------~~~v~q~~LETViP-------~~G~~V-Vv~-G~~--- 77 (120)
.++.|.+.+ .+|.||+ |.|.++.+..- .-.++-+++-+..| ..|+.| |.. ...
T Consensus 4 ~~~~VEV~~---~~G~~y~--a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep 78 (128)
T 3h8z_A 4 QGLPVEVRG---SNGAFYK--GFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEP 78 (128)
T ss_dssp TTCEEEEEC---TTSCEEE--EEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CC
T ss_pred cccEEEEec---CCCCEEE--EEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCc
Confidence 467777765 4589997 89999976551 22455556666655 489999 884 222
Q ss_pred -CCceEEEEEEeCCccEEEEEEcc
Q 038833 78 -QGSNARLLGVDNDKFCAKTKIEK 100 (120)
Q Consensus 78 -rG~~g~L~~~d~~~~~~~V~l~~ 100 (120)
.--.|++.++..+- ..|....
T Consensus 79 ~gWw~a~I~~~kg~f--~~V~y~~ 100 (128)
T 3h8z_A 79 CGWWLARVRMMKGDF--YVIEYAA 100 (128)
T ss_dssp CEEEEEEEEEEETTE--EEEEETT
T ss_pred CccEEEEEEEeeCCE--EEEEEcC
Confidence 34578999888755 3455443
No 24
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=77.83 E-value=9.4 Score=24.09 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=35.6
Q ss_pred cCceeeecC-------CCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 57 HDELETVIP-------QIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 57 q~~LETViP-------~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
+.-||++.| ++|+.+ ... ....--.|++++++.+...+.|...+- |. .+.+++.+|..+
T Consensus 3 ~~~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDY---GN-~e~V~~~~Lr~l 70 (77)
T 3pnw_C 3 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDY---GN-YEEVLLSNIKPI 70 (77)
T ss_dssp --------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTT---CC-EEEEEGGGEECC
T ss_pred ccccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcC---CC-eEEEeHHHeEEC
Confidence 345777766 468888 554 444567799999998766677777763 33 445888888654
No 25
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=77.26 E-value=4.6 Score=30.80 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=30.8
Q ss_pred EEEeecCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCC
Q 038833 52 VLRADHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDND 90 (120)
Q Consensus 52 ~~~v~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~ 90 (120)
.++++...+--.+| ..|.-+ |..|.+.|.+|++.++..-
T Consensus 125 ~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~ 165 (213)
T 3kbg_A 125 AVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAK 165 (213)
T ss_dssp EEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEEECCC
T ss_pred EEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEEEEEc
Confidence 44555555656666 789999 9999999999999999853
No 26
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=76.69 E-value=5.4 Score=31.37 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=30.4
Q ss_pred EEEeecCceeeecC-CCCCeE-EEecCCCCceEEEEEEeC
Q 038833 52 VLRADHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDN 89 (120)
Q Consensus 52 ~~~v~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~ 89 (120)
+++++...+--.|| ..|.-+ |..|.+.|.+|++.++..
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (265)
T 3iz6_D 161 KIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREK 200 (265)
T ss_dssp EECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEEC
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 44555555656666 789999 999999999999999975
No 27
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=73.73 E-value=8.2 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred ccCCcEEEEEeccCCCccceeeeEEEEEecCCc----e-------------EEEeecCceeeecCCCC
Q 038833 18 LFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKY----H-------------VLRADHDELETVIPQIE 68 (120)
Q Consensus 18 l~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~----~-------------~~~v~q~~LETViP~~G 68 (120)
+.+|-.|||.++ +.-+|+.-|.|.+|.+.. - .-+...+.||-|-|..|
T Consensus 2 i~rGs~VrIlr~---eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~~~~~ 66 (70)
T 1qp2_A 2 VQRGSKVRILRP---ESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVEAPKA 66 (70)
T ss_dssp CCTTCEEEECCT---TSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECCCCCS
T ss_pred cCCCCEEEEcCc---cceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEeccCcc
Confidence 467888999865 337999999999998744 1 22366777887776544
No 28
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.58 E-value=5.4 Score=30.97 Aligned_cols=38 Identities=16% Similarity=0.421 Sum_probs=29.6
Q ss_pred EEEeecCceeeecC-CCCCeE-EEecCCCCceEEEEEEeC
Q 038833 52 VLRADHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDN 89 (120)
Q Consensus 52 ~~~v~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~ 89 (120)
+++++...+--.|| ..|.-+ |..|.+.|.+|++.++..
T Consensus 165 ~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~ 204 (243)
T 3j20_E 165 LMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKR 204 (243)
T ss_dssp EEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCC
T ss_pred EEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEE
Confidence 33455455555566 789999 999999999999999974
No 29
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=71.02 E-value=9.8 Score=26.38 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=43.6
Q ss_pred cCCCccceeeeEEEEEecCCc----------eEEEeecCcee------eecCCCCCeE-EEe--cCCCCceEEEEEEeCC
Q 038833 30 AFADKGYCKQKGIVRKVIDKY----------HVLRADHDELE------TVIPQIEGLV-IVN--GAYQGSNARLLGVDND 90 (120)
Q Consensus 30 ~~~~gk~y~~KgvV~~V~~~~----------~~~~v~q~~LE------TViP~~G~~V-Vv~--G~~rG~~g~L~~~d~~ 90 (120)
++.+|+|| +|.|.++.... -.-++..+++. -=.|..|..| |.. |.. --|+..+....
T Consensus 15 kh~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~--y~a~f~g~~~~ 90 (118)
T 2qqr_A 15 KHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQV--YGAKFVASHPI 90 (118)
T ss_dssp ECTTSSEE--EEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCE--EEEEEEEEEEE
T ss_pred ECCCCCEE--eEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCE--eeeEEeceeEE
Confidence 46688999 77787775432 11222222222 2367899999 874 431 22455554432
Q ss_pred ccEEEEEEccCCCCCceEeeeccccccc
Q 038833 91 KFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 91 ~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
. .-+|.+++|. .+ .++=++|+.
T Consensus 91 ~-~Y~V~feDgs----~~-~~kR~~iyt 112 (118)
T 2qqr_A 91 Q-MYQVEFEDGS----QL-VVKRDDVYT 112 (118)
T ss_dssp E-EEEEEETTSC----EE-EECGGGEEE
T ss_pred E-EEEEEECCCC----EE-EEcHHHeec
Confidence 2 3456777753 23 366666653
No 30
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=70.40 E-value=9.3 Score=29.93 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=28.1
Q ss_pred EeecCceeeecC-CCCCeE-EEecCCCCceEEEEEEe
Q 038833 54 RADHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVD 88 (120)
Q Consensus 54 ~v~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d 88 (120)
+++...+.-.|| ..|.-+ |..|.+.|.+|++.++.
T Consensus 165 dl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e 201 (260)
T 2xzm_W 165 DLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIE 201 (260)
T ss_dssp ETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEE
T ss_pred eCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEE
Confidence 555445555677 789899 99999999999999875
No 31
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=68.11 E-value=17 Score=21.84 Aligned_cols=52 Identities=12% Similarity=-0.018 Sum_probs=37.4
Q ss_pred ecCCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 63 VIPQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 63 ViP~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
..|++|+.+ ... ..-+--.|++.+++.++..+.|...+- |. .+.+++.+|..
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdY---Gn-~e~V~~~~Lrp 60 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGY---GN-AEVTPLLNLKP 60 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTT---TE-EEEEEGGGEEC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEec---CC-EEEEeHHHcEe
Confidence 357899998 664 445667899999998766788887763 33 34578888754
No 32
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=66.62 E-value=5.4 Score=31.31 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=30.2
Q ss_pred EEEeecCceeeecC-CCCCeE-EEecCCCCceEEEEEEeC
Q 038833 52 VLRADHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDN 89 (120)
Q Consensus 52 ~~~v~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~ 89 (120)
.++++...+--.|| ..|.-+ |..|.+.|.+|++.++..
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (261)
T 3u5c_E 161 KIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKER 200 (261)
T ss_dssp EECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEEC
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 44555555556666 789999 999999999999999975
No 33
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=65.51 E-value=22 Score=22.23 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=36.9
Q ss_pred cCCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 64 IPQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 64 iP~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
.|++|+.+ ... ....--.|++++++.+...+.|...+- |. .+.+++.+|..+
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDY---GN-~e~V~~~~Lr~l 62 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDY---GN-YEEVLLSNIKPV 62 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTT---TE-EEEEEGGGEEEC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcC---CC-eEEEcHHHeEeC
Confidence 47889998 553 344668899999987666678877762 34 456888888654
No 34
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=65.11 E-value=4.7 Score=28.66 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDK 91 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~ 91 (120)
.+|.-| |..|+|.|..+.++++-.++
T Consensus 8 evGRVV~i~~Gr~aGk~avIV~iiD~~ 34 (134)
T 3iz5_N 8 EIGRVALVNYGKDYGRLVVIVDVVDQN 34 (134)
T ss_dssp CSSEEEECSCCSSSCCEEEEEEECSSS
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEcCCC
Confidence 467667 77999999999999997666
No 35
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=64.62 E-value=22 Score=21.83 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=35.3
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
..|+-| +=.-.-+=-.|++++++....++.|++.++. .. -+.+.||.+.
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s----~~-W~~~kdi~~~ 54 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDS----QF-LVLWKDISPA 54 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSC----EE-EEEGGGEEEC
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCC----eE-EEEhHHcccc
Confidence 357777 5443345568999999999999999998743 22 4778877654
No 36
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=63.99 E-value=11 Score=27.03 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=19.7
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCC
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDND 90 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~ 90 (120)
.+|.-| |+.|.|+|..+.++..-.+
T Consensus 6 kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 6 KYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred cCCeEEEEecCCcCCCEEEEEEecCC
Confidence 356556 7799999999999987655
No 37
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.08 E-value=5.8 Score=25.76 Aligned_cols=27 Identities=11% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCcc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKF 92 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~ 92 (120)
.+|.-| ++.|.|+|..+.++++-.+++
T Consensus 5 ~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~ 32 (83)
T 3j21_5 5 DVGRIAVVIAGRRAGQKVVVVDIIDKNF 32 (83)
T ss_dssp CTTEEEECSSSSSSCCCEEEEEECSSSC
T ss_pred ccCEEEEEeecCCCCCEEEEEEEcCCCE
Confidence 567667 779999999999999755553
No 38
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=61.70 E-value=8.2 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCCeE-EEecCCCCceEEEEEEeCCc
Q 038833 67 IEGLV-IVNGAYQGSNARLLGVDNDK 91 (120)
Q Consensus 67 ~G~~V-Vv~G~~rG~~g~L~~~d~~~ 91 (120)
+|.-| |..|+|.|..+.++++-.++
T Consensus 9 vGRVv~i~~G~~aGklavIVdIID~n 34 (126)
T 4a18_F 9 VGRVVYINYGADKGKLAVIVNIINQN 34 (126)
T ss_dssp TTEEEEECSSTTTTEEEEEEEEETTT
T ss_pred cceEEEEccCCccCCEEEEEEEecCC
Confidence 46555 77899999999999996666
No 39
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=60.37 E-value=17 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred ccCCcEEEEEeccCCCccceeeeEEEEEecCC
Q 038833 18 LFKGIIVEVMSKAFADKGYCKQKGIVRKVIDK 49 (120)
Q Consensus 18 l~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~ 49 (120)
+.+|=.|+|+ +|.|-+..|.|..+...
T Consensus 5 ~~~Gd~V~V~-----~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVV-----SGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEEC-----SGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEe-----ecCCCCcEEEEEEEcCC
Confidence 4567789998 78899999999999764
No 40
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=59.07 E-value=7.3 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=20.7
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDK 91 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~ 91 (120)
.+|.-| ++.|.|+|..+.++++-.++
T Consensus 5 ~~GrVv~~~~Gr~~Gk~~VIv~~iD~~ 31 (96)
T 2joy_A 5 EVGRICVKVKGREAGSKCVIVDIIDDN 31 (96)
T ss_dssp STTEEEECSSSSTTCCEEEEEEECSSS
T ss_pred ccCEEEEEeecCCCCCEEEEEEEeCCC
Confidence 456666 77999999999999995444
No 41
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=57.28 E-value=15 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.1
Q ss_pred cccCCcEEEEEeccCCCccceeeeEEEEEecCC
Q 038833 17 WLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDK 49 (120)
Q Consensus 17 Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~ 49 (120)
.+.+|=+|.+. .|+|.+++++|++++|.
T Consensus 14 fve~GrVV~i~-----~Gr~aGk~avIV~iiD~ 41 (138)
T 3izc_N 14 LVEVGRVVLIK-----KGQSAGKLAAIVEIIDQ 41 (138)
T ss_dssp CSSTTEEEECC-----SCSSSCCEEEEEEECSS
T ss_pred hcccCeEEEEe-----eCCCCCCEEEEEEEecC
Confidence 56677777553 67999999999999884
No 42
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=56.56 E-value=38 Score=21.95 Aligned_cols=51 Identities=8% Similarity=-0.063 Sum_probs=37.0
Q ss_pred cCCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 64 IPQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 64 iP~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
.|++|+.+ ... +...--.|++.+++.+...+.|.+.+- |. .+.+++.+|.-
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDY---GN-~E~V~~~~Lrp 62 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGY---GN-REEQNLSDLLS 62 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTT---CC-EEEEEGGGCBC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecC---CC-EEEEcHHHccc
Confidence 57899999 664 455677899999998656677877663 33 34588888764
No 43
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.81 E-value=37 Score=21.31 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=35.2
Q ss_pred ecCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 63 VIPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 63 ViP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
..|++|+.| -..-.-.--.|++.+++.+. .+.|.+.++ + .+.+++.+|..+
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~-~~~V~f~Dy-n----~e~v~~~~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKEG-TFTVQFYDG-V----IRCLKRMHIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTTS-SEEEEETTS-C----EEEECGGGEECC
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCC-EEEEEEecC-C----eEEecHHHCeeC
Confidence 457899999 66444455789999998753 467777775 1 445777777543
No 44
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=51.21 E-value=25 Score=24.29 Aligned_cols=44 Identities=30% Similarity=0.386 Sum_probs=30.0
Q ss_pred CCCeE-EEe-----cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccc
Q 038833 67 IEGLV-IVN-----GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDI 116 (120)
Q Consensus 67 ~G~~V-Vv~-----G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddv 116 (120)
+|=.| |+. | |-++.|.+.++- +++++.|+|.+ +++.+ .++-++|
T Consensus 17 ~~I~Vrii~k~~~~g-~y~~KgvV~~V~-~~~~c~V~l~~---~g~~v-~v~q~~L 66 (127)
T 2ckk_A 17 PEIIVKIITKKLGEK-YHKKKAIVKEVI-DKYTAVVKMID---SGDKL-KLDQTHL 66 (127)
T ss_dssp TTBEEEECCSTTCGG-GTTCEEEEEEEE-TTTEEEEEETT---TCCEE-EEEGGGE
T ss_pred CCeEEEEEEccCCCc-ccCceEEEEEec-CCCeEEEEECC---CCCEE-EEchHHc
Confidence 34456 663 4 899999999993 45788899855 24555 4665554
No 45
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=50.78 E-value=21 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=24.9
Q ss_pred ecCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 63 VIPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 63 ViP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
-+|++|+.- |++|. ++-.+.+++.+ |..+||.+|..
T Consensus 72 ~lP~vG~~~IvlD~~-------------g~PvciI~tt~-------V~~~pf~~Vt~ 108 (159)
T 3s9x_A 72 LMPQVGHLQVVTNWD-------------GKPICIIEITS-------VSKCQYNQVSE 108 (159)
T ss_dssp CCCCTTCEEEEECTT-------------CCEEEEEEEEE-------EEEEEGGGCCH
T ss_pred CCCCcCCEEEEECCC-------------CCEEEEEEEEE-------EEEEEcccCCH
Confidence 489999976 77873 23345566655 77789988763
No 46
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=50.45 E-value=28 Score=21.93 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=25.7
Q ss_pred CcccCCcEEEEEeccCCCccceeeeEEEEEecCCc
Q 038833 16 YWLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKY 50 (120)
Q Consensus 16 ~Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~ 50 (120)
.-+.+|=.||++ .|+|-+..|.|..|.+..
T Consensus 16 K~F~~GDHVkVi-----~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 16 KYFKMGDHVKVI-----AGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp SSCCTTCEEEES-----SSTTTTCEEEEEEECSSC
T ss_pred eeccCCCeEEEe-----ccEEcCceEEEEEEeCCE
Confidence 456788899998 578999999999999876
No 47
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=49.92 E-value=47 Score=21.06 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCCeE-EEecC--CCCceEEEEEEeCCc--cEEEEEEccCCCCCceEeeecccccc
Q 038833 66 QIEGLV-IVNGA--YQGSNARLLGVDNDK--FCAKTKIEKGVNDGRVLNAIDYEDIC 117 (120)
Q Consensus 66 ~~G~~V-Vv~G~--~rG~~g~L~~~d~~~--~~~~V~l~~g~~~~~~v~~~~yddvc 117 (120)
+.|..| |++-+ |-+..|++.++|.+. +-+.|.++...-.+-.-.++..++|-
T Consensus 3 ~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe 59 (70)
T 1qp2_A 3 QRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELV 59 (70)
T ss_dssp CTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEE
T ss_pred CCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHee
Confidence 468999 99633 488999999999854 66888888754333322335555543
No 48
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=49.64 E-value=45 Score=20.85 Aligned_cols=48 Identities=10% Similarity=-0.145 Sum_probs=34.2
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
+.|+.| .-.-.-+--.|++.+|+..+.++.|+..++. ..-+.+-||..
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s-----~~w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSS-----KSWVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTE-----EEEEETTTEEC
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCC-----EEEEEeecccc
Confidence 578888 5543334568999999999999999998743 33466666643
No 49
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=49.19 E-value=11 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCeE-EEecCCCCceEEEEEEeCCccEEEEEEcc
Q 038833 67 IEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEK 100 (120)
Q Consensus 67 ~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~ 100 (120)
+|... |+.|+-+|+.|.++-....-.-+.|.++.
T Consensus 86 iGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~F~~ 120 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEE 120 (284)
T ss_dssp BTCEEEECSSTTTTCEEEEEEEETTTTEEEEECCH
T ss_pred cCceeEEeecccCCCcceEecccCCeeeEEEECCH
Confidence 79999 99999999999999999888888887765
No 50
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=48.24 E-value=39 Score=19.71 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=36.0
Q ss_pred CCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 65 PQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 65 P~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
.++|+.+ -.. +.-+--.|++++++.+...+.|...+- |. .+.+++.+|..+
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DY---Gn-~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGY---GN-REEQNLSDLLSP 56 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTT---TE-EEEEEGGGCBCT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcC---CC-EEEEcHHHeeCC
Confidence 4678888 553 344567899999998666788887762 33 446888888654
No 51
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=46.12 E-value=53 Score=20.62 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=35.3
Q ss_pred ecCCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 63 VIPQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 63 ViP~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
..|++|+.+ +.. ....--.|+++++..+ ..+.|.+.+- |. .+.++..+|..+
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-~~~~V~fvDy---Gn-~e~v~~~~lr~l 79 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDF---GD-NGDCPLKDLRAL 79 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTT---CC-EEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEcC---CC-eEEEEHHHhhhc
Confidence 467899998 653 4556788999999754 3466766652 34 345888887654
No 52
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=45.02 E-value=33 Score=23.64 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=24.1
Q ss_pred cccCCcEEEEEeccCCCccceeeeEEEEEecCCc
Q 038833 17 WLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDKY 50 (120)
Q Consensus 17 Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~~ 50 (120)
=+.+|=.|||+ +|.|-+..|.|..+....
T Consensus 91 ~~~~Gd~VrI~-----~Gpf~g~~g~V~~vd~~k 119 (152)
T 3p8b_B 91 GLEPGDLVEVI-----AGPFKGQKAKVVKIDESK 119 (152)
T ss_dssp TCCTTCEEEEC-----SSTTTTCEEEEEEEETTT
T ss_pred cCCCCCEEEEe-----eecCCCCEEEEEEEeCCC
Confidence 36788899998 678999999999998644
No 53
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=44.39 E-value=49 Score=23.51 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCeE-EEe----cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 67 IEGLV-IVN----GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 67 ~G~~V-Vv~----G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
.|..| |-. ...+-..|+|.+.+.+. +++.+.... .+..+ .+||++|.+
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~--v~l~~~~k~-~~~~~-~i~~~~I~k 155 (164)
T 1ib8_A 103 VGKYIHVGLYQAIDKQKVFEGTLLAFEEDE--LTMEYMDKT-RKKTV-QIPYSLVSK 155 (164)
T ss_dssp CSEEEEEECSSCSSSCSEEEEEEEEEETTE--EEEEEECSS-CEEEE-EECSSCCSS
T ss_pred CCcEEEEEEecccCCceEEEEEEEEEeCCE--EEEEEeccc-CCeEE-EEEHHHCcE
Confidence 67777 553 22344689999999877 555554311 12334 499999876
No 54
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.25 E-value=62 Score=20.37 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=26.8
Q ss_pred ceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 80 SNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 80 ~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
-.|++..++....++.|++.++. ..-+.|-||-+.
T Consensus 26 YlGtV~kV~~~~~~ClV~FeD~s-----~~wv~~kdi~~~ 60 (68)
T 2e5p_A 26 YLGTIKKVDSAREVCLVQFEDDS-----QFLVLWKDISPA 60 (68)
T ss_dssp EEEEEEEEETTTTEEEEEETTTE-----EEEEETTTEECC
T ss_pred EEeEEEEEecCCcEEEEEEccCC-----eeeeeeeccccc
Confidence 57999999999999999988732 334777777654
No 55
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=39.78 E-value=41 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=23.5
Q ss_pred ecCCCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccc
Q 038833 63 VIPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDIC 117 (120)
Q Consensus 63 ViP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvc 117 (120)
-+|++|+.- ||+|.- +-.+.+++.+ |..+||.+|.
T Consensus 64 ~lP~vG~~~Ivld~~g-------------~pvcii~tt~-------V~~~pf~eVt 99 (166)
T 1t62_A 64 QLPKAGQYDIILDGQS-------------QPLAIIRTTK-------VEIMPMNKVS 99 (166)
T ss_dssp CCCCTTCEEEEECTTS-------------CEEEEEEEEE-------EEEEEGGGCC
T ss_pred CCCCCCcEEEEEcCCC-------------CEEEEEEEEE-------EEEEEcccCC
Confidence 489999877 888732 2345556554 6668888775
No 56
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=35.77 E-value=47 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=19.5
Q ss_pred CCCceEEEEEEeCCccEEEEEEccCC
Q 038833 77 YQGSNARLLGVDNDKFCAKTKIEKGV 102 (120)
Q Consensus 77 ~rG~~g~L~~~d~~~~~~~V~l~~g~ 102 (120)
-.|..|+|++.+.+. ++|+|.||.
T Consensus 97 sAGt~a~ii~ke~~~--~~vrLPSGe 120 (137)
T 1rl2_A 97 AAGTSAQVLGKEGKY--VIVRLASGE 120 (137)
T ss_dssp SSSCCEEEEEEETTE--EEEECTTSC
T ss_pred eCCCeEEEEEEcCCE--EEEECCCCC
Confidence 368899999998654 889999964
No 57
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=35.70 E-value=41 Score=21.94 Aligned_cols=35 Identities=0% Similarity=0.082 Sum_probs=22.3
Q ss_pred cCCCCCeE-E-EecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 64 IPQIEGLV-I-VNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 64 iP~~G~~V-V-v~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
.|++|+.+ | +++.. ...+.+++.+ |...+|++|..
T Consensus 32 ~~~~Gd~~~v~~~~~~-------------~~~~~i~vt~-------V~~~~~~eite 68 (103)
T 1te7_A 32 HFKTGDVLRVGRFEDD-------------GYFCTIEVTA-------TSTVTLDTLTE 68 (103)
T ss_dssp CCCTTSEEEEEETTTE-------------EEEEEEEEEE-------EEEECSTTTST
T ss_pred CCCCCCEEEEEECCCC-------------cEEEEEEEEE-------EEEEcHHHhCH
Confidence 58999998 6 56542 1234566655 66678877753
No 58
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=34.20 E-value=41 Score=25.16 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=19.2
Q ss_pred CCCeE-EEecCCCCceEEEEEEeCCc
Q 038833 67 IEGLV-IVNGAYQGSNARLLGVDNDK 91 (120)
Q Consensus 67 ~G~~V-Vv~G~~rG~~g~L~~~d~~~ 91 (120)
+|.-+ +|.|.|+|..+.++..-.+.
T Consensus 47 pGtVlIiL~Gr~~GKrvV~LKql~sg 72 (191)
T 4a18_E 47 PGTVLILLAGRFRGKRVVFLKQLKSG 72 (191)
T ss_dssp TTEEEEECSSTTTTBEEEEEEECTTS
T ss_pred CCCEEEEeccccCCCEEEEEEecCCC
Confidence 45445 77999999999998776554
No 59
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.94 E-value=97 Score=20.13 Aligned_cols=51 Identities=8% Similarity=-0.000 Sum_probs=34.7
Q ss_pred eecCCCCCeE-EEecC-CCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccc
Q 038833 62 TVIPQIEGLV-IVNGA-YQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDIC 117 (120)
Q Consensus 62 TViP~~G~~V-Vv~G~-~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvc 117 (120)
|+-|+.|.-| +.--. ..-.+|++++++.++- +.|.+.+- |. .+.++.+.+.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~-veVl~~Dy---Gn-~~~V~~~~LR 71 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL-VEVLLYDV---GV-ELVVNVDCLR 71 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSE-EEEECTTT---CC-EEEEETTTEE
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCe-EEEEEEcc---CC-EEEEEccccc
Confidence 7888999999 66222 2778999999998775 77776652 33 2235655543
No 60
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=33.68 E-value=48 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=19.2
Q ss_pred CCCceEEEEEEeCCccEEEEEEccCC
Q 038833 77 YQGSNARLLGVDNDKFCAKTKIEKGV 102 (120)
Q Consensus 77 ~rG~~g~L~~~d~~~~~~~V~l~~g~ 102 (120)
-.|..|+|++.+.+. ++|+|.||.
T Consensus 84 sAGt~a~ii~ke~~~--~~vrLPSGe 107 (136)
T 2ftc_B 84 AAGTCGVLLRKVNGT--AIIQLPSKR 107 (136)
T ss_pred eCCCeEEEEEecCCE--EEEECCCCC
Confidence 367899999997654 889999964
No 61
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=33.23 E-value=68 Score=18.15 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=30.8
Q ss_pred CCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 66 QIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 66 ~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
++|+.+ ... ..-.--.|++++++.+...+.|...+- |. .+.+++.+|.-
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDY---Gn-~e~v~~~~lrp 53 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDY---GN-YEEVLLSNIKP 53 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTT---CC-EEEEEGGGEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcc---CC-eEEEeHHHEEE
Confidence 457776 443 334556799999987666677777763 33 34688888753
No 62
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=32.88 E-value=96 Score=19.77 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCCeE-EEecC--CCCceEEEEEEeCC---ccEEEEEEcc
Q 038833 66 QIEGLV-IVNGA--YQGSNARLLGVDND---KFCAKTKIEK 100 (120)
Q Consensus 66 ~~G~~V-Vv~G~--~rG~~g~L~~~d~~---~~~~~V~l~~ 100 (120)
+.|.+| |++-+ +-..+|++.++|.+ ++-++|+++.
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdk 42 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDK 42 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEee
Confidence 458899 99744 36789999999987 7889998875
No 63
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=32.13 E-value=0.14 Score=36.34 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=22.5
Q ss_pred cCCCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 64 IPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 64 iP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
-+..|++| |+.|++.|..|++.++|.++ .+.|
T Consensus 109 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~V 141 (162)
T 2oug_A 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSML 141 (162)
T ss_dssp ------CTTHHHHHHHHHHHHTTCSSHHH-HHHH
T ss_pred CCCCCCEEEEcccCCCCcEEEEEEECCCC-EEEE
Confidence 34689999 99999999999999998776 3444
No 64
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=31.90 E-value=80 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.7
Q ss_pred CCcccCCcEEEEEeccCCCccceeeeEEEEEecCC
Q 038833 15 DYWLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDK 49 (120)
Q Consensus 15 ~~Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~ 49 (120)
..-+.+|=.|+|+ +|-|-+-.|+|..+...
T Consensus 125 ~~~~~~Gd~V~V~-----~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 125 KTLFEPGEMVRVN-----DGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCCCTTEEEEEC-----SSTTTTEEEEEEEEETT
T ss_pred cccCCCCCEEEEe-----ccCCCCcEEEEEEEeCC
Confidence 3356788899998 78899999999999753
No 65
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=30.95 E-value=38 Score=25.46 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=31.7
Q ss_pred cCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 57 HDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 57 q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
..|| .|+= +.|+.| +.+|.-.--.|++.+++.+...+.+
T Consensus 33 ~~Hl-~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 33 AHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp HHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred HHHH-HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 4588 8988 789999 8899877788899999988854444
No 66
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=30.78 E-value=81 Score=20.37 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=34.6
Q ss_pred ecCCCCCeE-EEe-cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 63 VIPQIEGLV-IVN-GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 63 ViP~~G~~V-Vv~-G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
-.|++|+.+ ... ....--.|++++++.++ .+.|.+.+- |. .+.+++.+|..+
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~-~~~V~fvDy---Gn-~e~v~~~~Lr~l 84 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTLENG-NLDLYFVDF---GD-NGDCPLKDLRAL 84 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCCSSS-CEEEEETTT---CC-EEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEeC---CC-eEEEehHHhhcC
Confidence 346789888 543 34567899999998743 466766652 34 345888887654
No 67
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=30.33 E-value=35 Score=25.77 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.8
Q ss_pred cCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 57 HDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 57 q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
..||-.|+= +.|+.| +.+|.-.--.|++.+++.+...+.+
T Consensus 25 ~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 25 ANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp HHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred HHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 347878887 789999 9999877778999999988854443
No 68
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=30.17 E-value=40 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=31.6
Q ss_pred cCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEc
Q 038833 57 HDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIE 99 (120)
Q Consensus 57 q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~ 99 (120)
..||-.|+= ++|+.| +.+|.-.--.|++.+++.+. +.+++.
T Consensus 27 ~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~--~~~~i~ 69 (257)
T 1vhy_A 27 ANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS--VKVEIL 69 (257)
T ss_dssp HHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSC--EEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCe--EEEEEE
Confidence 447777777 789999 88997666788999999887 444444
No 69
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=30.10 E-value=34 Score=24.12 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=21.8
Q ss_pred cccCCcEEEEEeccCCCccceeeeEEEEEecCC
Q 038833 17 WLFKGIIVEVMSKAFADKGYCKQKGIVRKVIDK 49 (120)
Q Consensus 17 Wl~~~I~Vkii~k~~~~gk~y~~KgvV~~V~~~ 49 (120)
.+.+|=+|.+. .|+|.+++++|++++|.
T Consensus 6 fvevGRVV~i~-----~Gr~aGk~avIV~iiD~ 33 (134)
T 3iz5_N 6 FVEIGRVALVN-----YGKDYGRLVVIVDVVDQ 33 (134)
T ss_dssp SCCSSEEEECS-----CCSSSCCEEEEEEECSS
T ss_pred ccccCeEEEEe-----eCCCCCCEEEEEEEcCC
Confidence 45667677543 67999999999999884
No 70
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.65 E-value=75 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=26.9
Q ss_pred CceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 79 GSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 79 G~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
=-.|++..++..+.++.|++.++. -.-..+.||.+.
T Consensus 23 fYlgtV~kV~~~~~~ClV~FeD~s-----~~wv~~kdi~~~ 58 (63)
T 2e5q_A 23 YYLGKIKRVSSSKQSCLVTFEDNS-----KYWVLWKDIQHA 58 (63)
T ss_dssp EEEEEECCCCSTTSEEEEEETTSC-----EEEEEGGGEECC
T ss_pred EEEEEEEEEecCCCEEEEEEccCc-----eeEEEeeccccc
Confidence 357999999999999999988742 224777777654
No 71
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=28.44 E-value=66 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCceEEEEEEeCCccEEEEEEccCC
Q 038833 78 QGSNARLLGVDNDKFCAKTKIEKGV 102 (120)
Q Consensus 78 rG~~g~L~~~d~~~~~~~V~l~~g~ 102 (120)
.|..|+|++.+.+...++|+|.||.
T Consensus 131 AGt~A~ii~k~~e~~~~~vrLPSGe 155 (264)
T 4a17_A 131 SGCYATIIGHSEDGDKTRIRLPSGA 155 (264)
T ss_dssp TTCCEEEEEECSSSCEEEEECTTSC
T ss_pred CCCeEEEEEEccCCCEEEEECCCCC
Confidence 6889999999866667889999964
No 72
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=28.23 E-value=1.2e+02 Score=19.50 Aligned_cols=46 Identities=13% Similarity=-0.062 Sum_probs=31.7
Q ss_pred CCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccccc
Q 038833 67 IEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDIC 117 (120)
Q Consensus 67 ~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvc 117 (120)
.|+-| +-.-.-+=-.|++.+++....++.|++.++. -.-+.+-||.
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S-----~~W~~~kdi~ 75 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDS-----QFLVLWKDIS 75 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSC-----EEEEETTTBC
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCC-----eEEEEeeccc
Confidence 45566 4333335578999999999999999998743 2246666654
No 73
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=26.70 E-value=72 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=18.5
Q ss_pred CCceEEEEEEeCCccEEEEEEccCC
Q 038833 78 QGSNARLLGVDNDKFCAKTKIEKGV 102 (120)
Q Consensus 78 rG~~g~L~~~d~~~~~~~V~l~~g~ 102 (120)
.|..|+|++.+.+. ++|+|.||.
T Consensus 98 AGt~a~ii~ke~~~--~~vrLPSGe 120 (178)
T 1giy_D 98 AGTSAQVLGKEGKY--VIVRLASGE 120 (178)
T ss_pred CCCeEEEEEecCCe--EEEECCCCC
Confidence 57889999997554 889999964
No 74
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=26.10 E-value=41 Score=25.03 Aligned_cols=39 Identities=5% Similarity=-0.009 Sum_probs=30.8
Q ss_pred ecCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 56 DHDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 56 ~q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
+..|| .|+= +.|+.| + +|.-.--.|++.+++.+...+.+
T Consensus 20 ~~~Hl-~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i 60 (229)
T 2egv_A 20 EVKHF-RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEI 60 (229)
T ss_dssp HHHHH-HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEE
T ss_pred HHHHH-HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEE
Confidence 35689 8998 789999 8 99877778899999888744433
No 75
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=25.49 E-value=97 Score=21.38 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=29.3
Q ss_pred ecCCCCCeE-EEe--cCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 63 VIPQIEGLV-IVN--GAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 63 ViP~~G~~V-Vv~--G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
=.|..|..| |.. |..- -|+..+..... .-+|.+++|. .+ .+.=++|+.
T Consensus 63 GpP~~G~~V~V~W~DG~~y--~a~f~g~~~~~-~YtV~FeDgs----~~-~~kR~~iyt 113 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPDGKLY--GAKYFGSNIAH-MYQVEFEDGS----QI-AMKREDIYT 113 (123)
T ss_dssp CCCCTTCEEEEECTTSCEE--EEEEEEEEEEE-EEEEECTTSC----EE-EEEGGGCCC
T ss_pred CCCCCCCEEEEEcCCCCEE--eEEEeeeeeEE-EEEEEECCCC----eE-EecHHHccc
Confidence 478999999 885 5432 26666664333 3456777753 23 477777764
No 76
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=25.15 E-value=52 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=29.9
Q ss_pred cCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEE
Q 038833 57 HDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAK 95 (120)
Q Consensus 57 q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~ 95 (120)
..||-.|+= ++|+.| +.+|.-.--.|++.+++.+...+.
T Consensus 24 ~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~ 64 (257)
T 3kw2_A 24 AGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVS 64 (257)
T ss_dssp HHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEE
T ss_pred HHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEE
Confidence 346667776 689999 999976667889999998874443
No 77
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=24.68 E-value=60 Score=24.72 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.6
Q ss_pred cCceeeecC-CCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 57 HDELETVIP-QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 57 q~~LETViP-~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
..||-.|+= ++|+.| +.+|.-.--.|++.+++.+...+.+
T Consensus 28 ~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i 69 (268)
T 1vhk_A 28 VHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLV 69 (268)
T ss_dssp HHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 457777887 789999 8999888888899999988744443
No 78
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=23.65 E-value=64 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccc
Q 038833 78 QGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYED 115 (120)
Q Consensus 78 rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~ydd 115 (120)
.|..|+|++.+.+...++|+|.||. +..++-+.
T Consensus 130 AGt~A~ii~k~~e~~~~~vrLPSGe-----~r~v~~~C 162 (261)
T 3iz5_B 130 SGDYAIVISHNPDNGTSRIKLPSGA-----KKIVPSSC 162 (261)
T ss_dssp TTCCEEEEECSSCSSCEEEECTTSC-----EEEECTTC
T ss_pred cCCeEEEEEeccCCCEEEEECCCCC-----EEEEecCC
Confidence 6889999999855556889999964 44455443
No 79
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=21.65 E-value=1e+02 Score=24.24 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccc
Q 038833 78 QGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYED 115 (120)
Q Consensus 78 rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~ydd 115 (120)
.|..|+|++.+.+. ++|+|.||. +..++.+.
T Consensus 159 AGt~A~ii~k~~~~--~~vrLPSGe-----~r~i~~~c 189 (276)
T 3v2d_D 159 AGTSAQIQGREGDY--VILRLPSGE-----LRKVHGEC 189 (276)
T ss_dssp TTCCEEEEEEETTE--EEEECTTSC-----EEEEETTC
T ss_pred CCCeEEEEEecCCE--EEEECCCCC-----eEEEcccC
Confidence 68899999998554 889999964 44455543
No 80
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.34 E-value=1e+02 Score=23.72 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCceEEEEEEeCCccEEEEEEccCCCCCceEeeecccc
Q 038833 78 QGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYED 115 (120)
Q Consensus 78 rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~ydd 115 (120)
.|..|+|++.+.+. ++|+|.||. ++.++.+.
T Consensus 125 AGt~A~ii~k~~~~--~~vrLPSGe-----~r~v~~~c 155 (239)
T 3j21_B 125 GGTYALVVSREPDK--VIVQLPSGE-----LKAFNPMC 155 (239)
T ss_dssp TTCCEEEEEECSSC--EEEECTTSC-----EEEECTTC
T ss_pred cCCeEEEEEecCCE--EEEEcCCCC-----EEEEeccC
Confidence 67899999998655 889999864 44455543
No 81
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=21.19 E-value=1.7e+02 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEeccCCCccceeeeEEEEEecCCc---------eEEEeecCceeeecC-CCCC
Q 038833 26 VMSKAFADKGYCKQKGIVRKVIDKY---------HVLRADHDELETVIP-QIEG 69 (120)
Q Consensus 26 ii~k~~~~gk~y~~KgvV~~V~~~~---------~~~~v~q~~LETViP-~~G~ 69 (120)
|-++.++. -.-|.-|+|+.+.+.+ .+.+|+-+.||++=- +.|.
T Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (200)
T 3gox_A 19 IAKNQLGN-IVPNSVGVIRAVNGKSAMVLFIGLNELKRVDFSELEAIDIYRTGK 71 (200)
T ss_dssp EESSCBTT-BCTTBEEEEEEEETTEEEEEETTTTEEEEEEGGGEEECCGGGSST
T ss_pred Eecccccc-ccccceeeEEecCCceEEEEEEehhHhhhcchhhcceeeeeeccc
Confidence 66666666 7788999999999988 577899999999854 5543
No 82
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=20.96 E-value=38 Score=23.12 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=23.6
Q ss_pred EEEeCCccEEEEEEccCCCCCceEeeecccccccc
Q 038833 85 LGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICKL 119 (120)
Q Consensus 85 ~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck~ 119 (120)
-++|++-....|++.+.. +|++|+.+|-+.+-++
T Consensus 60 F~vdee~~~~vVkVvD~~-TgEVIRqIPpEe~L~l 93 (117)
T 2hc5_A 60 FELHDKLNEYYVKVIEDS-TNEVIREIPPKRWLDF 93 (117)
T ss_dssp EEEEEETTEEEEEEEETT-TTEEEEEECHHHHHHH
T ss_pred EEEecCCCcEEEEEEECC-CCcEEEeCChHHHHHH
Confidence 345665566777777643 6899999998876543
No 83
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=20.82 E-value=1.8e+02 Score=18.95 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.7
Q ss_pred cCCCCCeE-EEecCCCCceEEEEEEeCCccEEEE
Q 038833 64 IPQIEGLV-IVNGAYQGSNARLLGVDNDKFCAKT 96 (120)
Q Consensus 64 iP~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V 96 (120)
.|-+|.++ ++.=..-=-.|.|-+||.++..+.+
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L 42 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIAL 42 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEE
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEE
Confidence 57889999 7765555578999999999966654
No 84
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.22 E-value=1.6e+02 Score=18.08 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCCeE-EEecCCCCceEEEEEEeCCccEEEEEEccCCCCCceEeeeccccccc
Q 038833 66 QIEGLV-IVNGAYQGSNARLLGVDNDKFCAKTKIEKGVNDGRVLNAIDYEDICK 118 (120)
Q Consensus 66 ~~G~~V-Vv~G~~rG~~g~L~~~d~~~~~~~V~l~~g~~~~~~v~~~~yddvck 118 (120)
++|++| .-.|..+=--|++.+++.+. ..+|+..+|. .+.+...+|..
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~~-~Y~V~F~dG~-----~etvk~~~ikp 55 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKDG-TYTVKFYDGV-----VQTVKHIHVKA 55 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTTS-EEEEEETTSC-----EEEEEGGGEEE
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCCC-eEEEEEeCCc-----eEEEeHHHccc
Confidence 589999 77788888899999999884 5778887742 33466666543
Done!