BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038837
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03945|IPAB_SHIDY Invasin IpaB OS=Shigella dysenteriae GN=ipaB PE=3 SV=1
Length = 580
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Query: 3 AAAHLTLL---LVILFWSFTLTS--------QNQQHSQQHLIAELQDAKLKIAGLETMLE 51
A++ LTLL L+ + +LT+ ++QQ ++Q E D KI L + E
Sbjct: 75 ASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSD---KINTLLSETE 131
Query: 52 ESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW- 110
R + N ++ D + D+ NKI+ +Q+ LS++ DS E+ EEI+L
Sbjct: 132 GLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPDS---PEKKKLSREEIQLTIK 188
Query: 111 --AASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143
AA + +E K L +L + S+Q+EK
Sbjct: 189 KDAAVKDRTL----IEQKTLSIHSKLTDKSMQLEK 219
>sp|P18011|IPAB_SHIFL Invasin IpaB OS=Shigella flexneri GN=ipaB PE=1 SV=2
Length = 580
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 3 AAAHLTLL---LVILFWSFTLTS--------QNQQHSQQHLIAELQDAKLKIAGLETMLE 51
A++ LTLL L+ + +LT+ ++QQ ++Q E D KI L + E
Sbjct: 75 ASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSD---KINTLLSETE 131
Query: 52 ESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW- 110
R + N ++ D + D+ NKI+ +Q+ LS++ D S +++L+ EEI+L
Sbjct: 132 GLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL-DPESPEKKKLS--REEIQLTIK 188
Query: 111 --AASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143
AA + +E K L +L + S+Q+EK
Sbjct: 189 KDAAVKDRTL----IEQKTLSIHSKLTDKSMQLEK 219
>sp|P39922|MYS3_HYDVU Myosin heavy chain, clone 203 (Fragment) OS=Hydra vulgaris PE=2
SV=1
Length = 539
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 46 LETMLEESIRKVNGKS-------NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER 98
LE+ L E++ K++G+ I+E ++ +D++T K LQS +S+++ + +++
Sbjct: 118 LESSLNEALEKLDGEEHSVLVLEEKIQEAEEKIDELTEKTEELQSNISRLETEKQNRDKQ 177
Query: 99 LNALEEEIR 107
++ L E+IR
Sbjct: 178 IDTLNEDIR 186
>sp|Q95VA8|TPM_TRISP Tropomyosin OS=Trichinella spiralis PE=2 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 22 SQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHL 81
++ QQ + L EL+D + K+ +E L+++ ++ G + +EE++K V + ++ L
Sbjct: 29 ARQQQERVEKLEEELRDTQKKMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAAL 88
Query: 82 QSLLSKIKDDSSRAEERL 99
+ +++D RAEERL
Sbjct: 89 NRRIQLLEEDFERAEERL 106
>sp|Q8WR63|TPM_TRIPS Tropomyosin OS=Trichinella pseudospiralis PE=2 SV=1
Length = 284
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 22 SQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHL 81
++ QQ + L EL+D + K+ +E L+++ ++ G + +EE++K V + ++ L
Sbjct: 29 ARQQQERVEKLEEELRDTQKKMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAAL 88
Query: 82 QSLLSKIKDDSSRAEERL 99
+ +++D RAEERL
Sbjct: 89 NRRIQLLEEDFERAEERL 106
>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2
Length = 2022
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 32/158 (20%)
Query: 31 HLIAELQDAKLKIAGLETMLEESIRKVN--GKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88
HL EL+DAK +A LE+ L+ + +++ G+ N LQ+ L+KI
Sbjct: 1087 HLEGELKDAKGNVANLESELDTTRERIHLLGEQNA----------------SLQTELNKI 1130
Query: 89 KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESK-------ALDAEDRLEEVSLQV 141
K D +++L E +L A N +I L+ K A D L+++ +
Sbjct: 1131 KGD-------IDSLFGENDMLKTAKESNEAEIDRLKQKLQRSIENAKKYSDALDKLRPEY 1183
Query: 142 EKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYA 179
+++ + E+ Q ++L QA+ E R +R+L A
Sbjct: 1184 DRLQNLYREKIKQAENLTQAVQDLESRLNQSRRELRDA 1221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,743,078
Number of Sequences: 539616
Number of extensions: 3410306
Number of successful extensions: 19851
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 715
Number of HSP's that attempted gapping in prelim test: 17282
Number of HSP's gapped (non-prelim): 2953
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)