Query 038837
Match_columns 287
No_of_seqs 53 out of 55
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 97.9 0.0065 1.4E-07 58.9 23.6 198 29-229 41-251 (343)
2 PRK11637 AmiB activator; Provi 97.8 0.0042 9.2E-08 61.1 20.0 7 32-38 52-58 (428)
3 PF12718 Tropomyosin_1: Tropom 97.5 0.0052 1.1E-07 52.8 15.1 122 30-162 3-124 (143)
4 PF04156 IncA: IncA protein; 97.5 0.0091 2E-07 52.1 16.2 98 65-162 91-188 (191)
5 TIGR02169 SMC_prok_A chromosom 97.5 0.0078 1.7E-07 64.3 18.3 14 222-235 535-548 (1164)
6 PRK11637 AmiB activator; Provi 97.4 0.029 6.2E-07 55.3 19.7 6 134-139 221-226 (428)
7 TIGR02168 SMC_prok_B chromosom 97.3 0.018 3.9E-07 61.2 18.2 56 31-86 674-729 (1179)
8 KOG0996 Structural maintenance 97.2 0.013 2.8E-07 64.5 16.5 146 32-177 832-1001(1293)
9 PF00261 Tropomyosin: Tropomyo 97.1 0.01 2.2E-07 54.4 13.0 123 32-168 6-128 (237)
10 PF00261 Tropomyosin: Tropomyo 97.0 0.037 8E-07 50.7 15.0 128 31-172 33-160 (237)
11 KOG0250 DNA repair protein RAD 96.9 0.18 3.9E-06 55.5 22.1 211 41-252 302-546 (1074)
12 PRK09039 hypothetical protein; 96.9 0.027 6E-07 54.6 14.4 69 75-143 115-183 (343)
13 PRK02224 chromosome segregatio 96.9 0.04 8.7E-07 58.3 16.8 59 30-88 275-333 (880)
14 PF09726 Macoilin: Transmembra 96.9 0.06 1.3E-06 57.0 17.7 121 28-148 454-603 (697)
15 PRK02224 chromosome segregatio 96.8 0.063 1.4E-06 56.9 17.4 42 44-85 261-302 (880)
16 PHA02562 46 endonuclease subun 96.6 0.16 3.6E-06 50.7 17.5 49 40-88 233-281 (562)
17 PF07888 CALCOCO1: Calcium bin 96.5 0.26 5.6E-06 51.1 18.3 87 30-116 153-239 (546)
18 COG1196 Smc Chromosome segrega 96.4 0.17 3.7E-06 56.0 18.0 66 99-164 851-916 (1163)
19 PF12718 Tropomyosin_1: Tropom 96.4 0.21 4.5E-06 43.0 14.9 114 33-146 13-129 (143)
20 COG1579 Zn-ribbon protein, pos 96.4 0.22 4.7E-06 46.7 15.8 47 97-143 89-135 (239)
21 PF07888 CALCOCO1: Calcium bin 96.4 0.28 6E-06 50.9 17.7 94 30-123 209-323 (546)
22 COG4942 Membrane-bound metallo 96.3 0.59 1.3E-05 47.1 19.3 61 100-160 157-217 (420)
23 PF15619 Lebercilin: Ciliary p 96.2 0.24 5.1E-06 44.8 14.7 96 68-164 53-150 (194)
24 TIGR00606 rad50 rad50. This fa 96.1 1.1 2.4E-05 50.4 22.3 23 221-243 943-965 (1311)
25 PF04582 Reo_sigmaC: Reovirus 96.1 0.01 2.2E-07 57.7 5.7 140 14-165 13-152 (326)
26 PRK03918 chromosome segregatio 96.1 0.43 9.4E-06 50.4 18.3 28 122-149 663-690 (880)
27 PF12329 TMF_DNA_bd: TATA elem 96.1 0.021 4.6E-07 44.1 6.4 65 67-131 3-74 (74)
28 PF10174 Cast: RIM-binding pro 96.1 0.35 7.7E-06 52.0 17.4 62 27-89 177-258 (775)
29 PRK03918 chromosome segregatio 96.0 0.28 6E-06 51.9 16.4 35 112-146 660-694 (880)
30 PF08614 ATG16: Autophagy prot 96.0 0.043 9.3E-07 48.8 8.8 96 31-133 78-173 (194)
31 PHA02562 46 endonuclease subun 96.0 0.68 1.5E-05 46.4 18.2 43 72-114 230-279 (562)
32 KOG0250 DNA repair protein RAD 95.9 0.24 5.3E-06 54.6 15.7 97 47-143 688-787 (1074)
33 TIGR01843 type_I_hlyD type I s 95.9 0.56 1.2E-05 44.7 16.3 27 31-57 78-104 (423)
34 PF15619 Lebercilin: Ciliary p 95.8 1.4 3.1E-05 39.9 17.7 118 54-171 46-182 (194)
35 KOG0161 Myosin class II heavy 95.6 0.56 1.2E-05 54.8 17.7 140 30-169 897-1050(1930)
36 PF06818 Fez1: Fez1; InterPro 95.6 0.44 9.6E-06 43.7 13.7 91 30-120 34-154 (202)
37 PF05667 DUF812: Protein of un 95.5 1 2.2E-05 47.1 17.7 83 33-115 327-412 (594)
38 PF08614 ATG16: Autophagy prot 95.4 0.085 1.8E-06 46.9 8.5 108 70-177 68-175 (194)
39 PRK04863 mukB cell division pr 95.4 0.81 1.8E-05 52.5 18.0 135 30-169 279-413 (1486)
40 KOG0161 Myosin class II heavy 95.4 0.63 1.4E-05 54.5 17.1 44 132-175 1041-1084(1930)
41 PF04156 IncA: IncA protein; 95.4 0.75 1.6E-05 40.1 14.1 23 36-58 90-112 (191)
42 PF15070 GOLGA2L5: Putative go 95.4 0.91 2E-05 47.7 16.8 116 30-146 83-209 (617)
43 TIGR00606 rad50 rad50. This fa 95.3 0.84 1.8E-05 51.3 17.4 23 32-54 756-778 (1311)
44 COG3883 Uncharacterized protei 95.3 1.8 3.8E-05 41.3 17.0 57 100-156 151-207 (265)
45 COG1579 Zn-ribbon protein, pos 95.2 0.7 1.5E-05 43.3 14.1 47 113-159 91-137 (239)
46 PF12128 DUF3584: Protein of u 95.1 1.6 3.5E-05 48.8 18.8 58 30-87 355-413 (1201)
47 PF05701 WEMBL: Weak chloropla 95.0 0.86 1.9E-05 46.6 15.3 72 71-142 276-347 (522)
48 PF09726 Macoilin: Transmembra 95.0 0.42 9.1E-06 50.8 13.3 105 37-155 541-652 (697)
49 PF10481 CENP-F_N: Cenp-F N-te 94.8 0.58 1.3E-05 45.0 12.5 117 41-178 18-134 (307)
50 PF10186 Atg14: UV radiation r 94.8 2.7 5.8E-05 38.3 16.6 25 30-54 23-47 (302)
51 TIGR03185 DNA_S_dndD DNA sulfu 94.8 0.65 1.4E-05 48.4 13.8 84 69-152 391-476 (650)
52 KOG0933 Structural maintenance 94.7 0.84 1.8E-05 50.4 14.8 127 32-158 739-883 (1174)
53 PF05911 DUF869: Plant protein 94.7 0.87 1.9E-05 49.1 14.8 131 31-175 586-716 (769)
54 KOG4809 Rab6 GTPase-interactin 94.6 1.6 3.5E-05 45.5 15.9 148 30-177 239-445 (654)
55 COG2433 Uncharacterized conser 94.4 0.69 1.5E-05 48.6 12.7 157 22-178 337-521 (652)
56 PRK04778 septation ring format 94.3 3.7 8.1E-05 42.3 18.0 100 68-167 316-418 (569)
57 PF05701 WEMBL: Weak chloropla 94.3 3.2 6.9E-05 42.5 17.4 80 64-143 297-376 (522)
58 KOG0996 Structural maintenance 94.3 2.3 4.9E-05 47.8 17.0 124 28-158 399-547 (1293)
59 TIGR01843 type_I_hlyD type I s 94.2 3.4 7.4E-05 39.4 16.5 32 101-132 200-231 (423)
60 PF12325 TMF_TATA_bd: TATA ele 94.2 1.7 3.8E-05 36.7 12.7 100 34-151 16-115 (120)
61 PF13870 DUF4201: Domain of un 94.2 2.3 5E-05 37.1 14.0 22 148-169 154-175 (177)
62 PRK01156 chromosome segregatio 94.1 1.6 3.5E-05 46.7 15.5 13 250-262 833-845 (895)
63 TIGR03185 DNA_S_dndD DNA sulfu 94.1 0.71 1.5E-05 48.1 12.4 54 34-87 391-446 (650)
64 PF14662 CCDC155: Coiled-coil 93.9 5 0.00011 36.7 15.9 38 125-162 151-188 (193)
65 PF11570 E2R135: Coiled-coil r 93.7 0.67 1.5E-05 40.0 9.3 101 32-147 13-113 (136)
66 PF10473 CENP-F_leu_zip: Leuci 93.6 4.6 9.9E-05 35.1 15.1 106 32-137 8-113 (140)
67 PF06008 Laminin_I: Laminin Do 93.6 4.4 9.5E-05 37.5 15.4 44 45-88 21-64 (264)
68 KOG4674 Uncharacterized conser 93.4 2.9 6.2E-05 48.9 16.4 87 28-114 1230-1324(1822)
69 PRK10929 putative mechanosensi 93.4 5.1 0.00011 45.0 17.9 155 26-182 22-204 (1109)
70 PRK10884 SH3 domain-containing 93.2 0.83 1.8E-05 41.8 9.9 24 31-54 90-113 (206)
71 PF00038 Filament: Intermediat 93.1 7.4 0.00016 36.3 17.3 48 115-162 206-253 (312)
72 PRK04778 septation ring format 93.0 3.9 8.4E-05 42.2 15.5 105 32-145 254-368 (569)
73 PF05667 DUF812: Protein of un 93.0 7.4 0.00016 40.9 17.6 118 30-147 331-483 (594)
74 PF05483 SCP-1: Synaptonemal c 93.0 7.3 0.00016 41.8 17.4 143 29-172 291-444 (786)
75 PF13851 GAS: Growth-arrest sp 93.0 6.9 0.00015 35.4 17.7 144 30-177 30-174 (201)
76 PF10174 Cast: RIM-binding pro 92.9 3.2 6.9E-05 44.9 15.2 99 30-128 325-423 (775)
77 PF12761 End3: Actin cytoskele 92.9 0.73 1.6E-05 42.1 8.9 92 30-123 99-193 (195)
78 PF09730 BicD: Microtubule-ass 92.9 7.3 0.00016 41.9 17.5 76 98-173 360-439 (717)
79 PRK12705 hypothetical protein; 92.8 2.5 5.3E-05 43.6 13.5 17 4-20 4-20 (508)
80 KOG0995 Centromere-associated 92.8 15 0.00032 38.7 22.6 122 32-157 233-371 (581)
81 KOG4674 Uncharacterized conser 92.7 4.7 0.0001 47.3 16.6 135 41-175 805-955 (1822)
82 KOG0963 Transcription factor/C 92.6 8.5 0.00018 40.7 17.2 76 94-169 246-333 (629)
83 PF07106 TBPIP: Tat binding pr 92.6 1.3 2.9E-05 38.3 9.9 41 78-118 95-137 (169)
84 TIGR03017 EpsF chain length de 92.6 3.1 6.8E-05 40.6 13.5 135 34-168 215-357 (444)
85 PF09403 FadA: Adhesion protei 92.6 2.9 6.3E-05 35.7 11.6 73 7-85 6-78 (126)
86 PRK04863 mukB cell division pr 92.5 3.3 7.1E-05 47.8 15.3 142 28-172 986-1144(1486)
87 COG3883 Uncharacterized protei 92.4 11 0.00023 36.1 19.1 55 31-85 42-96 (265)
88 PF11802 CENP-K: Centromere-as 92.3 8.1 0.00017 37.0 15.4 50 58-111 16-66 (268)
89 PF02994 Transposase_22: L1 tr 92.2 0.31 6.6E-06 47.9 6.1 42 123-164 142-183 (370)
90 smart00787 Spc7 Spc7 kinetocho 92.2 4.3 9.2E-05 39.3 13.6 81 68-148 171-262 (312)
91 PF05335 DUF745: Protein of un 92.1 7.2 0.00016 35.3 14.2 100 56-155 61-160 (188)
92 PF12128 DUF3584: Protein of u 92.1 9.6 0.00021 42.9 18.0 62 27-88 600-668 (1201)
93 TIGR03007 pepcterm_ChnLen poly 92.0 5 0.00011 39.9 14.3 78 73-150 251-342 (498)
94 PF09304 Cortex-I_coil: Cortex 91.9 5.3 0.00012 33.4 12.0 42 99-140 60-101 (107)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.7 7.2 0.00016 32.7 14.5 112 31-146 7-119 (132)
96 PF08317 Spc7: Spc7 kinetochor 91.7 6.1 0.00013 37.9 14.1 23 66-88 174-196 (325)
97 KOG0933 Structural maintenance 91.5 5.8 0.00013 44.2 15.0 84 47-130 786-869 (1174)
98 PF05278 PEARLI-4: Arabidopsis 91.5 4.8 0.00011 38.5 12.9 131 8-146 126-263 (269)
99 smart00787 Spc7 Spc7 kinetocho 91.3 3.4 7.4E-05 39.9 12.0 56 105-160 205-260 (312)
100 KOG0978 E3 ubiquitin ligase in 91.3 13 0.00029 39.9 17.2 79 99-177 526-618 (698)
101 PF04012 PspA_IM30: PspA/IM30 91.3 8.7 0.00019 34.3 13.9 24 65-88 26-49 (221)
102 KOG0243 Kinesin-like protein [ 91.3 8.5 0.00018 42.9 16.1 136 30-170 407-549 (1041)
103 PF04582 Reo_sigmaC: Reovirus 91.2 0.28 6.1E-06 47.9 4.5 101 28-128 43-150 (326)
104 COG5185 HEC1 Protein involved 91.2 8.4 0.00018 39.9 15.0 135 22-156 248-406 (622)
105 TIGR02977 phageshock_pspA phag 91.2 7.7 0.00017 35.2 13.6 105 61-167 23-134 (219)
106 PF04111 APG6: Autophagy prote 91.2 2.9 6.2E-05 40.3 11.3 49 75-123 42-90 (314)
107 PF05010 TACC: Transforming ac 91.1 12 0.00027 34.4 17.7 56 29-84 4-59 (207)
108 PF08317 Spc7: Spc7 kinetochor 91.1 8.9 0.00019 36.8 14.6 8 76-83 191-198 (325)
109 PF04111 APG6: Autophagy prote 91.1 1.5 3.2E-05 42.3 9.2 12 254-266 283-294 (314)
110 KOG0976 Rho/Rac1-interacting s 91.0 9.1 0.0002 42.1 15.6 59 121-182 280-338 (1265)
111 PF15070 GOLGA2L5: Putative go 90.9 5.9 0.00013 41.8 14.1 108 39-146 20-136 (617)
112 KOG0980 Actin-binding protein 90.8 8.5 0.00018 42.3 15.2 84 60-143 415-505 (980)
113 PF03962 Mnd1: Mnd1 family; I 90.6 1.8 4E-05 38.8 8.8 36 127-165 112-147 (188)
114 PF06005 DUF904: Protein of un 90.6 1.5 3.3E-05 33.9 7.2 52 63-114 5-56 (72)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.5 9 0.00019 32.2 12.5 82 74-156 22-104 (132)
116 TIGR03007 pepcterm_ChnLen poly 90.5 3.3 7.2E-05 41.2 11.4 25 256-280 472-496 (498)
117 PF03962 Mnd1: Mnd1 family; I 90.2 4.3 9.3E-05 36.4 10.9 60 55-114 62-127 (188)
118 PF12795 MscS_porin: Mechanose 90.2 15 0.00032 33.6 16.7 139 28-168 79-226 (240)
119 KOG0977 Nuclear envelope prote 90.1 6.1 0.00013 41.2 13.2 119 33-158 112-235 (546)
120 COG5185 HEC1 Protein involved 90.1 5.3 0.00011 41.4 12.4 114 37-151 256-369 (622)
121 PF04102 SlyX: SlyX; InterPro 90.1 1.4 3E-05 33.5 6.5 51 123-173 2-52 (69)
122 COG2433 Uncharacterized conser 90.0 2.9 6.3E-05 44.1 10.8 24 65-88 439-462 (652)
123 PF13870 DUF4201: Domain of un 89.9 13 0.00027 32.5 13.5 31 32-62 4-34 (177)
124 PRK11281 hypothetical protein; 89.9 13 0.00029 41.8 16.4 153 26-180 35-221 (1113)
125 PF04849 HAP1_N: HAP1 N-termin 89.8 21 0.00045 34.9 17.4 127 24-150 94-266 (306)
126 PF11932 DUF3450: Protein of u 89.8 14 0.00031 34.0 14.2 19 132-150 131-149 (251)
127 PF06160 EzrA: Septation ring 89.8 15 0.00033 38.0 15.8 130 13-143 331-462 (560)
128 KOG4643 Uncharacterized coiled 89.6 8.1 0.00017 43.1 14.0 54 28-88 171-224 (1195)
129 KOG1003 Actin filament-coating 89.6 17 0.00037 33.6 16.4 104 32-142 51-154 (205)
130 PF00769 ERM: Ezrin/radixin/mo 89.6 18 0.00038 33.8 14.8 127 35-175 6-132 (246)
131 PRK00736 hypothetical protein; 89.5 1.9 4.1E-05 32.8 6.9 49 122-170 2-50 (68)
132 TIGR02680 conserved hypothetic 89.5 21 0.00045 40.9 17.8 18 31-48 234-251 (1353)
133 PF06705 SF-assemblin: SF-asse 89.5 17 0.00037 33.4 14.5 113 33-157 4-117 (247)
134 TIGR01000 bacteriocin_acc bact 89.4 16 0.00035 36.4 15.3 24 30-53 100-123 (457)
135 PF01920 Prefoldin_2: Prefoldi 89.4 1.6 3.5E-05 34.1 6.7 43 94-136 59-101 (106)
136 TIGR01005 eps_transp_fam exopo 89.4 9.7 0.00021 40.2 14.3 22 31-52 248-269 (754)
137 PF08702 Fib_alpha: Fibrinogen 89.3 14 0.00029 32.1 13.3 37 128-164 93-129 (146)
138 COG1842 PspA Phage shock prote 89.1 19 0.00041 33.4 14.9 102 62-163 24-137 (225)
139 KOG0995 Centromere-associated 89.1 8.5 0.00018 40.4 13.3 83 61-143 293-389 (581)
140 PRK02119 hypothetical protein; 89.1 2.6 5.6E-05 32.6 7.4 52 120-171 4-55 (73)
141 TIGR01000 bacteriocin_acc bact 89.0 9.7 0.00021 37.9 13.4 21 154-174 292-312 (457)
142 PRK10698 phage shock protein P 89.0 15 0.00032 33.8 13.6 106 60-167 22-134 (222)
143 TIGR03017 EpsF chain length de 89.0 19 0.00041 35.2 15.2 28 27-54 171-198 (444)
144 PRK10884 SH3 domain-containing 88.9 5 0.00011 36.7 10.4 16 39-54 91-106 (206)
145 PRK00295 hypothetical protein; 88.9 2.3 5E-05 32.4 6.9 51 122-172 2-52 (68)
146 PRK04406 hypothetical protein; 88.8 2.6 5.5E-05 32.8 7.3 49 121-169 7-55 (75)
147 PF07798 DUF1640: Protein of u 88.7 11 0.00024 33.1 12.2 23 66-88 48-70 (177)
148 KOG0994 Extracellular matrix g 88.7 51 0.0011 37.9 19.8 82 100-181 1580-1661(1758)
149 cd00632 Prefoldin_beta Prefold 88.6 11 0.00023 30.3 11.1 94 30-136 9-102 (105)
150 PF12329 TMF_DNA_bd: TATA elem 88.5 1.8 4E-05 33.4 6.2 65 55-119 5-69 (74)
151 KOG1899 LAR transmembrane tyro 88.4 21 0.00045 38.3 15.5 67 32-98 130-196 (861)
152 PRK00846 hypothetical protein; 88.3 3.1 6.7E-05 32.8 7.4 53 121-173 9-61 (77)
153 PF02994 Transposase_22: L1 tr 88.1 1.6 3.4E-05 43.0 7.1 88 71-161 100-187 (370)
154 PF12325 TMF_TATA_bd: TATA ele 88.1 4.4 9.6E-05 34.2 8.8 81 33-117 29-109 (120)
155 TIGR02680 conserved hypothetic 87.9 11 0.00023 43.2 14.3 45 47-91 282-326 (1353)
156 KOG0994 Extracellular matrix g 87.9 27 0.00059 40.0 16.7 77 68-144 1583-1673(1758)
157 PRK04325 hypothetical protein; 87.9 3 6.6E-05 32.2 7.1 48 122-169 6-53 (74)
158 TIGR01005 eps_transp_fam exopo 87.7 41 0.00088 35.6 17.7 138 30-167 240-390 (754)
159 PRK02793 phi X174 lysis protei 87.7 3.4 7.4E-05 31.8 7.3 51 122-172 5-55 (72)
160 KOG4360 Uncharacterized coiled 87.6 19 0.00042 37.6 14.5 133 35-178 160-307 (596)
161 TIGR03319 YmdA_YtgF conserved 87.6 16 0.00034 37.8 14.1 26 127-152 124-149 (514)
162 PF10186 Atg14: UV radiation r 87.5 22 0.00048 32.3 14.0 23 32-54 18-40 (302)
163 PF05266 DUF724: Protein of un 87.4 5.6 0.00012 36.0 9.6 37 99-135 140-176 (190)
164 KOG0964 Structural maintenance 87.4 35 0.00076 38.3 17.0 79 99-177 413-498 (1200)
165 KOG4643 Uncharacterized coiled 87.3 23 0.00049 39.8 15.5 115 39-164 468-592 (1195)
166 KOG0612 Rho-associated, coiled 87.2 23 0.00051 40.3 15.8 32 57-88 496-527 (1317)
167 PF10473 CENP-F_leu_zip: Leuci 87.2 19 0.00042 31.3 14.5 63 99-161 54-116 (140)
168 PF07106 TBPIP: Tat binding pr 87.1 5.6 0.00012 34.4 9.2 57 33-89 78-136 (169)
169 KOG4673 Transcription factor T 87.1 29 0.00062 37.7 15.7 24 55-78 446-469 (961)
170 KOG3433 Protein involved in me 87.0 6.5 0.00014 36.0 9.7 63 58-120 77-139 (203)
171 PF13166 AAA_13: AAA domain 87.0 40 0.00086 35.1 16.8 15 235-249 633-647 (712)
172 PF10146 zf-C4H2: Zinc finger- 86.8 16 0.00034 34.1 12.5 45 36-84 3-47 (230)
173 PF13166 AAA_13: AAA domain 86.4 11 0.00024 39.1 12.5 31 29-59 324-354 (712)
174 TIGR02473 flagell_FliJ flagell 86.4 17 0.00036 29.8 14.9 64 98-161 62-125 (141)
175 KOG0243 Kinesin-like protein [ 86.2 17 0.00038 40.6 14.1 121 31-158 445-572 (1041)
176 PF06008 Laminin_I: Laminin Do 86.2 28 0.00061 32.2 16.8 55 65-119 90-145 (264)
177 TIGR00634 recN DNA repair prot 86.1 28 0.0006 35.8 15.0 124 62-189 266-390 (563)
178 PRK15422 septal ring assembly 85.9 4.9 0.00011 31.9 7.4 67 62-128 4-70 (79)
179 PF04012 PspA_IM30: PspA/IM30 85.7 26 0.00056 31.3 14.8 109 28-143 24-137 (221)
180 COG1340 Uncharacterized archae 85.7 37 0.00079 33.1 18.6 68 99-166 160-248 (294)
181 KOG0979 Structural maintenance 85.5 46 0.00099 37.4 16.7 109 27-144 176-295 (1072)
182 KOG0977 Nuclear envelope prote 85.5 25 0.00054 36.9 14.2 50 117-166 140-189 (546)
183 COG1730 GIM5 Predicted prefold 85.3 25 0.00054 30.8 12.4 45 97-141 94-138 (145)
184 KOG1029 Endocytic adaptor prot 85.2 20 0.00044 39.3 13.7 19 32-50 442-460 (1118)
185 PF05622 HOOK: HOOK protein; 85.2 0.27 5.8E-06 51.8 0.0 132 27-169 443-592 (713)
186 KOG0963 Transcription factor/C 85.1 54 0.0012 35.0 16.5 36 11-46 104-140 (629)
187 PF05529 Bap31: B-cell recepto 85.1 13 0.00028 32.8 10.6 24 31-54 122-145 (192)
188 PF06818 Fez1: Fez1; InterPro 85.0 26 0.00056 32.4 12.7 83 34-116 24-106 (202)
189 PF13851 GAS: Growth-arrest sp 84.8 20 0.00043 32.5 11.8 25 99-123 64-88 (201)
190 PRK12704 phosphodiesterase; Pr 84.6 20 0.00044 37.0 13.2 30 123-152 126-155 (520)
191 PF11932 DUF3450: Protein of u 84.5 28 0.0006 32.0 12.9 16 73-88 53-68 (251)
192 COG3206 GumC Uncharacterized p 84.5 27 0.00059 34.7 13.8 83 36-118 287-370 (458)
193 PF05483 SCP-1: Synaptonemal c 84.1 24 0.00051 38.1 13.5 78 62-139 573-650 (786)
194 PF14992 TMCO5: TMCO5 family 83.9 9.5 0.00021 36.7 9.8 91 70-160 26-137 (280)
195 PF01576 Myosin_tail_1: Myosin 83.9 0.33 7.1E-06 52.5 0.0 74 104-177 426-499 (859)
196 PF08826 DMPK_coil: DMPK coile 83.8 4.1 8.8E-05 30.8 5.8 44 107-150 14-57 (61)
197 PF10481 CENP-F_N: Cenp-F N-te 83.8 9.5 0.00021 36.9 9.6 78 89-166 9-94 (307)
198 PF10205 KLRAQ: Predicted coil 83.6 17 0.00036 30.3 9.8 68 32-114 3-71 (102)
199 PF10212 TTKRSYEDQ: Predicted 83.2 12 0.00027 38.8 10.9 52 99-160 464-515 (518)
200 KOG0239 Kinesin (KAR3 subfamil 83.2 12 0.00027 39.8 11.2 44 99-142 243-286 (670)
201 KOG0964 Structural maintenance 83.1 19 0.00041 40.3 12.6 57 102-158 395-451 (1200)
202 PF04508 Pox_A_type_inc: Viral 83.1 1.5 3.3E-05 27.3 2.7 19 35-53 2-20 (23)
203 PRK11281 hypothetical protein; 82.9 51 0.0011 37.4 16.2 132 32-165 126-265 (1113)
204 PRK00888 ftsB cell division pr 82.7 8.2 0.00018 31.6 7.8 14 9-22 8-21 (105)
205 PF05557 MAD: Mitotic checkpoi 82.7 0.39 8.5E-06 50.6 0.0 13 99-111 187-199 (722)
206 PF05557 MAD: Mitotic checkpoi 82.7 0.39 8.5E-06 50.6 0.0 41 119-159 172-212 (722)
207 PF09787 Golgin_A5: Golgin sub 82.5 25 0.00054 36.0 12.8 128 30-162 277-426 (511)
208 TIGR02338 gimC_beta prefoldin, 82.5 13 0.00028 30.3 8.8 41 97-137 67-107 (110)
209 PF14073 Cep57_CLD: Centrosome 82.4 38 0.00083 30.7 14.1 71 93-163 67-151 (178)
210 PF05008 V-SNARE: Vesicle tran 82.4 6.1 0.00013 29.8 6.5 74 36-115 5-79 (79)
211 KOG4673 Transcription factor T 82.3 50 0.0011 36.0 15.0 21 148-168 589-609 (961)
212 PF07889 DUF1664: Protein of u 82.3 10 0.00023 32.4 8.4 40 99-138 84-123 (126)
213 PF05266 DUF724: Protein of un 81.9 19 0.00042 32.5 10.5 94 54-158 68-164 (190)
214 KOG0612 Rho-associated, coiled 81.7 30 0.00065 39.5 13.7 93 50-142 453-549 (1317)
215 PF13747 DUF4164: Domain of un 81.6 22 0.00047 28.4 9.6 44 100-143 35-78 (89)
216 KOG0976 Rho/Rac1-interacting s 81.4 72 0.0016 35.5 15.9 34 138-171 385-428 (1265)
217 PF09304 Cortex-I_coil: Cortex 81.2 31 0.00068 28.9 13.2 65 72-136 12-76 (107)
218 COG4372 Uncharacterized protei 81.2 68 0.0015 32.8 17.8 73 71-143 139-225 (499)
219 PF15450 DUF4631: Domain of un 81.1 65 0.0014 33.8 15.0 29 97-125 412-440 (531)
220 PF06785 UPF0242: Uncharacteri 80.8 16 0.00035 36.3 10.2 80 37-116 137-220 (401)
221 COG0419 SbcC ATPase involved i 80.8 92 0.002 34.0 18.0 19 99-117 625-643 (908)
222 PF10168 Nup88: Nuclear pore c 80.7 29 0.00063 37.3 13.0 20 148-167 683-704 (717)
223 PF06160 EzrA: Septation ring 80.7 75 0.0016 33.0 22.9 21 68-88 312-332 (560)
224 PRK00106 hypothetical protein; 80.7 33 0.00071 35.8 13.0 31 123-153 141-171 (535)
225 PF04849 HAP1_N: HAP1 N-termin 80.4 42 0.00092 32.8 12.9 83 68-150 205-287 (306)
226 PF05739 SNARE: SNARE domain; 80.4 12 0.00027 26.6 7.3 47 100-146 14-60 (63)
227 PRK10929 putative mechanosensi 80.4 60 0.0013 36.9 15.6 67 100-168 183-249 (1109)
228 KOG1962 B-cell receptor-associ 80.3 12 0.00026 34.9 8.7 15 96-110 178-192 (216)
229 TIGR02338 gimC_beta prefoldin, 80.2 25 0.00054 28.5 9.8 19 33-51 9-27 (110)
230 KOG0018 Structural maintenance 80.1 18 0.00039 40.6 11.3 52 34-89 652-703 (1141)
231 PF10392 COG5: Golgi transport 80.0 19 0.0004 30.2 9.2 91 24-114 23-117 (132)
232 PRK15396 murein lipoprotein; P 80.0 10 0.00022 30.0 7.0 51 7-58 6-56 (78)
233 PRK03947 prefoldin subunit alp 79.8 7.8 0.00017 32.4 6.9 25 30-54 9-33 (140)
234 PF04977 DivIC: Septum formati 79.7 2.7 5.9E-05 31.2 3.7 26 30-55 20-45 (80)
235 KOG3091 Nuclear pore complex, 79.4 51 0.0011 34.3 13.6 124 36-159 350-493 (508)
236 PF07794 DUF1633: Protein of u 79.3 4 8.6E-05 42.5 5.7 56 95-150 595-650 (790)
237 PF01920 Prefoldin_2: Prefoldi 79.2 13 0.00028 29.0 7.6 23 31-53 9-31 (106)
238 PRK10361 DNA recombination pro 79.1 83 0.0018 32.5 15.1 31 121-151 136-166 (475)
239 TIGR03545 conserved hypothetic 78.9 19 0.00041 37.6 10.7 79 76-157 191-269 (555)
240 COG4942 Membrane-bound metallo 78.6 82 0.0018 32.2 18.1 52 115-166 193-244 (420)
241 KOG2077 JNK/SAPK-associated pr 78.2 68 0.0015 34.4 14.2 115 47-175 304-433 (832)
242 PF12072 DUF3552: Domain of un 78.1 15 0.00032 33.1 8.5 92 68-162 70-163 (201)
243 PF01576 Myosin_tail_1: Myosin 77.8 0.71 1.5E-05 50.0 0.0 122 47-168 636-758 (859)
244 PF06120 Phage_HK97_TLTM: Tail 77.8 49 0.0011 32.2 12.5 49 31-86 52-105 (301)
245 KOG0979 Structural maintenance 77.8 35 0.00076 38.3 12.5 82 62-143 276-357 (1072)
246 PF15456 Uds1: Up-regulated Du 77.3 39 0.00085 28.7 10.3 95 34-139 22-116 (124)
247 PF05911 DUF869: Plant protein 77.2 1.2E+02 0.0026 33.3 16.5 120 30-156 27-158 (769)
248 PF06005 DUF904: Protein of un 77.0 20 0.00044 27.7 7.9 66 70-142 5-70 (72)
249 PRK12704 phosphodiesterase; Pr 76.6 29 0.00062 35.9 11.1 19 235-253 316-334 (520)
250 KOG0978 E3 ubiquitin ligase in 76.6 85 0.0018 34.0 14.7 55 99-153 561-615 (698)
251 PF10146 zf-C4H2: Zinc finger- 76.5 61 0.0013 30.2 12.3 32 101-132 43-74 (230)
252 KOG0980 Actin-binding protein 76.4 1.4E+02 0.0029 33.5 16.5 115 30-147 389-516 (980)
253 PF04102 SlyX: SlyX; InterPro 76.2 7.4 0.00016 29.5 5.2 47 33-79 3-49 (69)
254 KOG0971 Microtubule-associated 76.1 72 0.0016 35.9 14.1 28 235-262 708-735 (1243)
255 PF13863 DUF4200: Domain of un 75.8 41 0.00089 27.3 12.7 62 102-163 44-105 (126)
256 PF12252 SidE: Dot/Icm substra 75.7 23 0.0005 40.1 10.5 107 29-142 1065-1177(1439)
257 PF03148 Tektin: Tektin family 75.6 83 0.0018 31.1 13.7 111 28-145 245-358 (384)
258 TIGR02976 phageshock_pspB phag 75.2 6.4 0.00014 30.8 4.7 41 12-52 18-67 (75)
259 PRK13729 conjugal transfer pil 74.7 8.3 0.00018 39.6 6.6 45 96-140 75-119 (475)
260 cd07656 F-BAR_srGAP The F-BAR 74.7 73 0.0016 29.6 12.9 107 99-205 119-235 (241)
261 PF05531 NPV_P10: Nucleopolyhe 74.4 12 0.00026 29.4 6.0 48 96-147 17-64 (75)
262 KOG0018 Structural maintenance 74.2 1.6E+02 0.0036 33.5 16.6 129 33-164 330-469 (1141)
263 PF06248 Zw10: Centromere/kine 74.0 64 0.0014 33.3 12.9 66 75-148 52-119 (593)
264 KOG4360 Uncharacterized coiled 74.0 57 0.0012 34.3 12.2 107 60-166 195-302 (596)
265 PRK09343 prefoldin subunit bet 73.5 33 0.00072 28.6 8.9 44 96-139 70-113 (121)
266 PF10267 Tmemb_cc2: Predicted 73.4 35 0.00076 34.4 10.5 25 30-54 215-239 (395)
267 PF07989 Microtub_assoc: Micro 73.4 37 0.0008 26.4 8.5 34 129-162 40-73 (75)
268 KOG0239 Kinesin (KAR3 subfamil 73.1 1.4E+02 0.003 32.1 15.9 124 36-170 170-293 (670)
269 PF15294 Leu_zip: Leucine zipp 73.1 55 0.0012 31.6 11.3 44 76-119 167-212 (278)
270 PLN02939 transferase, transfer 72.9 1.1E+02 0.0024 34.4 15.0 48 33-80 162-216 (977)
271 KOG4603 TBP-1 interacting prot 72.7 57 0.0012 29.8 10.6 23 34-56 79-101 (201)
272 COG1340 Uncharacterized archae 72.6 99 0.0021 30.2 16.2 23 136-158 162-184 (294)
273 PF12072 DUF3552: Domain of un 72.5 73 0.0016 28.6 16.3 8 13-20 11-18 (201)
274 COG1382 GimC Prefoldin, chaper 72.4 55 0.0012 27.9 10.0 41 30-70 9-49 (119)
275 PF14662 CCDC155: Coiled-coil 72.1 82 0.0018 29.0 13.8 46 99-144 90-135 (193)
276 COG4372 Uncharacterized protei 71.9 1.2E+02 0.0027 31.0 17.7 100 48-147 182-281 (499)
277 TIGR03319 YmdA_YtgF conserved 71.7 67 0.0014 33.2 12.3 8 153-160 167-174 (514)
278 KOG0244 Kinesin-like protein [ 71.6 75 0.0016 35.3 13.1 51 99-152 518-568 (913)
279 PF14282 FlxA: FlxA-like prote 71.6 15 0.00034 29.9 6.4 20 33-52 18-37 (106)
280 COG3074 Uncharacterized protei 71.5 27 0.00059 27.5 7.3 51 62-112 4-61 (79)
281 PF08657 DASH_Spc34: DASH comp 71.4 8.9 0.00019 36.3 5.6 75 30-115 183-257 (259)
282 KOG0804 Cytoplasmic Zn-finger 71.2 64 0.0014 33.3 11.7 35 99-133 391-425 (493)
283 COG4477 EzrA Negative regulato 71.0 1.2E+02 0.0026 32.0 13.9 143 14-174 180-351 (570)
284 COG3352 FlaC Putative archaeal 70.7 38 0.00083 30.1 8.9 64 60-123 42-105 (157)
285 PF06667 PspB: Phage shock pro 70.5 9.7 0.00021 29.9 4.7 44 9-52 15-67 (75)
286 PF09728 Taxilin: Myosin-like 70.5 57 0.0012 31.5 10.9 23 66-88 241-263 (309)
287 PF12777 MT: Microtubule-bindi 69.9 38 0.00081 32.8 9.6 12 202-213 138-149 (344)
288 KOG1853 LIS1-interacting prote 69.8 53 0.0011 31.8 10.2 65 96-163 58-122 (333)
289 PF04065 Not3: Not1 N-terminal 69.6 39 0.00085 31.7 9.3 66 30-95 125-196 (233)
290 KOG0946 ER-Golgi vesicle-tethe 69.5 1.8E+02 0.0038 32.5 15.1 30 114-143 733-762 (970)
291 KOG2991 Splicing regulator [RN 69.3 83 0.0018 30.6 11.4 68 77-144 237-304 (330)
292 PF06103 DUF948: Bacterial pro 69.1 51 0.0011 25.5 8.8 53 33-85 25-77 (90)
293 PF03915 AIP3: Actin interacti 69.1 97 0.0021 31.5 12.6 17 97-113 220-236 (424)
294 KOG3990 Uncharacterized conser 68.9 16 0.00035 35.1 6.6 31 35-65 226-256 (305)
295 PF09755 DUF2046: Uncharacteri 68.8 1.2E+02 0.0027 29.7 13.8 90 32-127 111-201 (310)
296 PF06476 DUF1090: Protein of u 68.8 69 0.0015 26.8 11.1 56 29-85 26-86 (115)
297 KOG0962 DNA repair protein RAD 68.8 1.3E+02 0.0029 34.8 14.6 78 40-119 1007-1084(1294)
298 PF06248 Zw10: Centromere/kine 68.6 1.4E+02 0.0031 30.9 14.0 18 213-230 274-291 (593)
299 PRK14139 heat shock protein Gr 68.6 60 0.0013 29.4 10.0 19 146-164 83-101 (185)
300 PRK02793 phi X174 lysis protei 68.6 21 0.00045 27.5 6.1 22 33-54 7-28 (72)
301 TIGR01010 BexC_CtrB_KpsE polys 68.4 1.1E+02 0.0025 29.2 18.8 59 62-120 170-230 (362)
302 PF07989 Microtub_assoc: Micro 68.2 30 0.00064 26.9 7.0 61 61-121 6-67 (75)
303 PF10267 Tmemb_cc2: Predicted 68.1 1.2E+02 0.0027 30.6 13.0 21 125-145 298-318 (395)
304 PF15450 DUF4631: Domain of un 67.7 1.5E+02 0.0032 31.2 13.6 53 100-163 451-503 (531)
305 PF06120 Phage_HK97_TLTM: Tail 67.7 1.3E+02 0.0027 29.4 13.3 38 38-82 71-108 (301)
306 TIGR01010 BexC_CtrB_KpsE polys 67.6 1.2E+02 0.0026 29.1 13.2 17 71-87 216-232 (362)
307 KOG1962 B-cell receptor-associ 67.4 62 0.0013 30.2 10.0 39 122-160 155-193 (216)
308 TIGR00293 prefoldin, archaeal 67.2 40 0.00087 27.5 8.0 28 99-126 95-122 (126)
309 PRK13729 conjugal transfer pil 67.1 16 0.00034 37.7 6.6 52 63-114 70-121 (475)
310 PLN03229 acetyl-coenzyme A car 67.0 86 0.0019 34.3 12.2 37 127-163 668-705 (762)
311 PF09744 Jnk-SapK_ap_N: JNK_SA 66.8 92 0.002 27.5 13.5 43 8-52 26-68 (158)
312 PF05010 TACC: Transforming ac 66.8 1.1E+02 0.0023 28.3 17.9 74 76-149 69-142 (207)
313 PF07111 HCR: Alpha helical co 66.7 98 0.0021 33.7 12.4 111 31-141 328-438 (739)
314 PF10205 KLRAQ: Predicted coil 66.5 35 0.00075 28.4 7.4 63 81-143 10-72 (102)
315 PRK11020 hypothetical protein; 66.4 50 0.0011 28.1 8.4 51 32-84 3-53 (118)
316 PRK15374 pathogenicity island 66.3 87 0.0019 33.2 11.8 66 104-173 134-199 (593)
317 PF06785 UPF0242: Uncharacteri 66.3 1.5E+02 0.0033 29.8 13.6 59 30-91 56-114 (401)
318 PF13094 CENP-Q: CENP-Q, a CEN 66.1 22 0.00048 30.5 6.5 17 221-237 128-144 (160)
319 PF10805 DUF2730: Protein of u 66.0 32 0.00069 28.1 7.1 22 30-51 31-52 (106)
320 KOG4787 Uncharacterized conser 66.0 2E+02 0.0043 31.1 15.3 32 146-177 494-525 (852)
321 PF05546 She9_MDM33: She9 / Md 65.9 1.1E+02 0.0025 28.3 12.4 89 34-143 32-131 (207)
322 PF06810 Phage_GP20: Phage min 65.8 33 0.00071 30.0 7.6 48 98-149 21-68 (155)
323 PF10211 Ax_dynein_light: Axon 65.4 73 0.0016 28.6 9.9 22 25-46 78-100 (189)
324 PF00038 Filament: Intermediat 65.3 1.2E+02 0.0026 28.3 18.1 30 101-130 220-249 (312)
325 PF08826 DMPK_coil: DMPK coile 65.2 20 0.00043 27.1 5.3 23 94-116 36-58 (61)
326 PF05531 NPV_P10: Nucleopolyhe 65.1 19 0.00042 28.3 5.4 15 99-113 13-27 (75)
327 cd00176 SPEC Spectrin repeats, 64.9 79 0.0017 26.1 13.3 122 30-152 75-206 (213)
328 PRK11519 tyrosine kinase; Prov 64.8 2E+02 0.0043 30.7 14.6 26 41-66 267-292 (719)
329 PF05622 HOOK: HOOK protein; 64.8 2.1 4.6E-05 45.2 0.0 109 34-142 466-586 (713)
330 PF04799 Fzo_mitofusin: fzo-li 64.6 26 0.00057 31.5 6.8 48 95-146 118-165 (171)
331 PF02050 FliJ: Flagellar FliJ 64.5 62 0.0013 24.7 13.7 59 98-156 46-104 (123)
332 PF10046 BLOC1_2: Biogenesis o 64.4 73 0.0016 25.6 9.0 43 64-106 23-65 (99)
333 PF10168 Nup88: Nuclear pore c 64.3 59 0.0013 35.1 10.5 30 115-144 590-619 (717)
334 PRK04325 hypothetical protein; 64.3 43 0.00093 25.8 7.1 49 32-87 7-55 (74)
335 PF04880 NUDE_C: NUDE protein, 64.1 9.7 0.00021 34.0 4.0 41 78-130 16-56 (166)
336 KOG2391 Vacuolar sorting prote 64.1 30 0.00065 34.5 7.6 62 68-129 217-278 (365)
337 PRK10476 multidrug resistance 63.7 1.4E+02 0.003 28.4 13.5 39 30-68 82-120 (346)
338 PF05700 BCAS2: Breast carcino 63.6 84 0.0018 28.6 10.1 25 64-88 138-162 (221)
339 PF15397 DUF4618: Domain of un 63.6 73 0.0016 30.4 9.9 91 30-123 16-107 (258)
340 cd07653 F-BAR_CIP4-like The F- 63.5 1.2E+02 0.0025 27.5 14.7 23 153-175 161-183 (251)
341 PF04899 MbeD_MobD: MbeD/MobD 62.9 69 0.0015 24.8 8.1 61 81-144 8-68 (70)
342 cd00584 Prefoldin_alpha Prefol 62.9 21 0.00044 29.4 5.5 30 97-126 94-123 (129)
343 PF11221 Med21: Subunit 21 of 62.8 44 0.00094 28.6 7.7 59 62-123 69-130 (144)
344 PF04859 DUF641: Plant protein 62.7 19 0.00041 31.0 5.4 44 24-67 70-113 (131)
345 KOG4603 TBP-1 interacting prot 62.7 25 0.00055 32.1 6.4 27 99-125 118-144 (201)
346 PRK09973 putative outer membra 62.7 36 0.00077 27.5 6.6 44 10-54 8-51 (85)
347 PRK00295 hypothetical protein; 62.7 21 0.00046 27.1 5.1 21 34-54 5-25 (68)
348 PF10212 TTKRSYEDQ: Predicted 62.6 1.2E+02 0.0025 31.9 11.9 63 82-144 419-481 (518)
349 PF15290 Syntaphilin: Golgi-lo 62.6 1.5E+02 0.0033 28.9 11.9 106 33-164 60-167 (305)
350 PRK14148 heat shock protein Gr 62.5 1.1E+02 0.0024 28.0 10.5 67 99-165 42-110 (195)
351 PF13094 CENP-Q: CENP-Q, a CEN 62.3 33 0.00072 29.4 6.9 36 100-135 44-79 (160)
352 KOG2264 Exostosin EXT1L [Signa 62.0 35 0.00075 36.5 8.0 18 35-52 94-111 (907)
353 PF14197 Cep57_CLD_2: Centroso 61.9 63 0.0014 24.8 7.6 61 75-149 4-64 (69)
354 PF14915 CCDC144C: CCDC144C pr 61.9 1.7E+02 0.0036 28.8 14.6 128 29-173 1-132 (305)
355 PF10498 IFT57: Intra-flagella 61.8 1.7E+02 0.0038 29.0 13.4 53 103-155 265-317 (359)
356 cd00632 Prefoldin_beta Prefold 61.6 82 0.0018 25.2 10.3 21 32-52 4-24 (105)
357 PRK00409 recombination and DNA 61.6 1.1E+02 0.0025 33.1 12.2 39 218-256 715-765 (782)
358 PRK01203 prefoldin subunit alp 61.3 1.1E+02 0.0023 26.4 9.8 33 95-127 85-117 (130)
359 TIGR00998 8a0101 efflux pump m 61.2 1.4E+02 0.0031 27.8 13.4 25 30-54 76-100 (334)
360 smart00502 BBC B-Box C-termina 61.0 77 0.0017 24.7 12.5 33 131-163 71-103 (127)
361 PF04100 Vps53_N: Vps53-like, 60.9 1.4E+02 0.0029 29.7 11.7 106 31-147 22-127 (383)
362 PF14235 DUF4337: Domain of un 60.9 38 0.00081 29.8 7.1 71 69-143 42-112 (157)
363 PF04977 DivIC: Septum formati 60.9 34 0.00073 25.2 5.9 28 100-127 34-61 (80)
364 PF14282 FlxA: FlxA-like prote 60.7 32 0.00069 28.1 6.2 51 69-119 19-73 (106)
365 cd00890 Prefoldin Prefoldin is 60.5 37 0.00081 27.3 6.6 20 33-52 5-24 (129)
366 PF07246 Phlebovirus_NSM: Phle 60.4 1E+02 0.0022 29.7 10.2 21 38-58 145-165 (264)
367 PRK13922 rod shape-determining 60.3 1.4E+02 0.003 27.7 11.1 13 192-204 166-178 (276)
368 PHA02414 hypothetical protein 60.3 41 0.0009 28.0 6.7 67 34-110 4-77 (111)
369 TIGR02977 phageshock_pspA phag 59.9 1.4E+02 0.0029 27.1 14.9 108 29-143 26-145 (219)
370 PF13514 AAA_27: AAA domain 59.8 2.9E+02 0.0064 31.0 17.6 27 62-88 808-834 (1111)
371 PF02996 Prefoldin: Prefoldin 59.7 44 0.00096 26.7 6.9 40 99-138 79-118 (120)
372 PRK14011 prefoldin subunit alp 59.7 1E+02 0.0023 26.7 9.5 21 33-53 9-29 (144)
373 COG3937 Uncharacterized conser 59.6 24 0.00053 29.6 5.3 19 95-113 88-106 (108)
374 PRK10246 exonuclease subunit S 59.6 2.9E+02 0.0064 30.9 17.7 15 153-167 784-798 (1047)
375 KOG0971 Microtubule-associated 59.4 3.1E+02 0.0068 31.2 16.7 21 218-238 562-582 (1243)
376 KOG3433 Protein involved in me 59.4 1.1E+02 0.0024 28.2 9.9 60 99-158 83-142 (203)
377 PRK12705 hypothetical protein; 59.2 1.4E+02 0.0031 31.1 11.9 51 34-84 70-120 (508)
378 KOG1853 LIS1-interacting prote 59.2 1.8E+02 0.0039 28.3 15.6 45 99-143 114-158 (333)
379 PRK02119 hypothetical protein; 59.1 50 0.0011 25.5 6.7 48 116-163 7-54 (73)
380 PF12777 MT: Microtubule-bindi 58.9 66 0.0014 31.1 9.0 75 100-174 210-284 (344)
381 PRK00736 hypothetical protein; 58.8 58 0.0013 24.7 6.9 21 34-54 5-25 (68)
382 PRK04406 hypothetical protein; 58.7 57 0.0012 25.3 7.0 47 116-162 9-55 (75)
383 PRK11546 zraP zinc resistance 58.6 40 0.00086 29.5 6.7 46 76-121 68-113 (143)
384 TIGR00634 recN DNA repair prot 58.3 1.3E+02 0.0029 30.9 11.6 22 43-64 275-296 (563)
385 PF06476 DUF1090: Protein of u 58.3 1.1E+02 0.0024 25.6 12.2 87 39-143 22-114 (115)
386 PF08647 BRE1: BRE1 E3 ubiquit 57.8 97 0.0021 24.8 10.1 26 99-124 54-79 (96)
387 PF15066 CAGE1: Cancer-associa 57.7 2.4E+02 0.0053 29.5 13.0 71 73-150 328-408 (527)
388 PF04871 Uso1_p115_C: Uso1 / p 57.6 1.2E+02 0.0026 25.9 11.8 14 37-50 11-24 (136)
389 COG1382 GimC Prefoldin, chaper 57.5 97 0.0021 26.4 8.7 39 99-144 72-110 (119)
390 smart00502 BBC B-Box C-termina 57.5 89 0.0019 24.3 9.7 22 31-52 4-25 (127)
391 PRK09458 pspB phage shock prot 57.5 32 0.00069 27.2 5.4 19 34-52 49-67 (75)
392 cd00890 Prefoldin Prefoldin is 57.5 91 0.002 25.0 8.4 23 31-53 10-32 (129)
393 PF13758 Prefoldin_3: Prefoldi 57.5 44 0.00096 27.6 6.4 42 33-74 11-59 (99)
394 KOG4438 Centromere-associated 57.4 2.4E+02 0.0051 29.1 16.0 129 27-168 241-409 (446)
395 PF10779 XhlA: Haemolysin XhlA 57.3 81 0.0018 23.8 7.6 49 101-149 3-51 (71)
396 KOG4593 Mitotic checkpoint pro 57.1 2.9E+02 0.0063 30.1 15.3 64 100-163 147-210 (716)
397 PRK11519 tyrosine kinase; Prov 57.0 2.7E+02 0.0059 29.7 14.1 21 32-52 272-292 (719)
398 PF05529 Bap31: B-cell recepto 56.7 52 0.0011 28.9 7.3 24 100-123 157-180 (192)
399 PF02050 FliJ: Flagellar FliJ 56.6 87 0.0019 23.9 13.6 29 33-61 11-39 (123)
400 PRK15396 murein lipoprotein; P 56.1 52 0.0011 26.0 6.4 47 98-144 26-72 (78)
401 TIGR01554 major_cap_HK97 phage 55.1 53 0.0011 31.8 7.7 60 73-132 3-62 (378)
402 PRK10803 tol-pal system protei 54.8 41 0.00089 31.5 6.7 15 40-54 39-53 (263)
403 PF08702 Fib_alpha: Fibrinogen 54.8 1.4E+02 0.0031 25.8 12.2 32 95-126 95-126 (146)
404 PF15294 Leu_zip: Leucine zipp 54.8 2.1E+02 0.0045 27.7 12.8 67 92-162 210-276 (278)
405 PRK09841 cryptic autophosphory 54.8 1.5E+02 0.0032 31.7 11.5 121 28-156 268-394 (726)
406 TIGR02971 heterocyst_DevB ABC 54.7 1.8E+02 0.004 27.1 15.5 20 34-53 55-74 (327)
407 KOG0946 ER-Golgi vesicle-tethe 54.6 3.5E+02 0.0076 30.3 16.1 96 39-134 662-781 (970)
408 PF14523 Syntaxin_2: Syntaxin- 54.5 1E+02 0.0022 23.9 9.9 28 148-175 66-93 (102)
409 PRK00409 recombination and DNA 54.4 3.1E+02 0.0067 29.9 13.9 23 66-88 517-539 (782)
410 TIGR02209 ftsL_broad cell divi 54.2 40 0.00087 25.5 5.5 46 9-56 8-53 (85)
411 KOG0998 Synaptic vesicle prote 53.9 46 0.001 36.5 7.7 112 30-141 431-549 (847)
412 PF05064 Nsp1_C: Nsp1-like C-t 53.7 17 0.00038 30.0 3.6 77 37-113 18-94 (116)
413 KOG4568 Cytoskeleton-associate 52.8 2.7E+02 0.0057 30.2 12.9 59 103-170 595-657 (664)
414 cd00179 SynN Syntaxin N-termin 52.5 1.3E+02 0.0029 24.8 11.8 25 30-54 9-33 (151)
415 PRK10920 putative uroporphyrin 52.5 2.4E+02 0.0052 28.4 11.9 52 114-166 95-146 (390)
416 PF14197 Cep57_CLD_2: Centroso 51.5 88 0.0019 23.9 6.9 23 31-53 9-31 (69)
417 PF00901 Orbi_VP5: Orbivirus o 51.5 1.9E+02 0.0042 30.2 11.2 33 131-163 139-171 (508)
418 PF03233 Cauli_AT: Aphid trans 51.3 68 0.0015 28.8 7.1 71 66-144 91-161 (163)
419 PF12001 DUF3496: Domain of un 51.2 98 0.0021 26.1 7.6 64 73-142 4-67 (111)
420 PF00435 Spectrin: Spectrin re 51.0 95 0.0021 22.7 12.1 56 99-154 43-102 (105)
421 KOG4460 Nuclear pore complex, 50.9 3.5E+02 0.0075 29.1 15.7 97 66-162 620-739 (741)
422 PF06810 Phage_GP20: Phage min 50.8 97 0.0021 27.0 7.9 30 39-68 18-47 (155)
423 KOG0614 cGMP-dependent protein 50.6 30 0.00064 36.8 5.4 54 35-88 18-71 (732)
424 PF03954 Lectin_N: Hepatic lec 50.4 19 0.00042 31.4 3.4 84 16-117 49-132 (138)
425 PF10779 XhlA: Haemolysin XhlA 50.2 37 0.0008 25.6 4.6 18 37-54 2-19 (71)
426 KOG2129 Uncharacterized conser 50.2 3.2E+02 0.0069 28.5 16.8 212 26-254 56-313 (552)
427 PF13863 DUF4200: Domain of un 50.1 1.4E+02 0.0029 24.2 11.7 25 100-124 77-101 (126)
428 PF10458 Val_tRNA-synt_C: Valy 50.1 68 0.0015 23.8 6.0 49 102-150 2-64 (66)
429 PF13805 Pil1: Eisosome compon 50.1 1.3E+02 0.0028 29.0 9.2 24 68-91 95-118 (271)
430 TIGR01069 mutS2 MutS2 family p 50.0 3.7E+02 0.0079 29.3 13.6 40 218-257 704-755 (771)
431 KOG0998 Synaptic vesicle prote 49.9 45 0.00097 36.6 6.9 54 35-88 457-510 (847)
432 PF09787 Golgin_A5: Golgin sub 49.8 3.1E+02 0.0066 28.2 18.1 74 99-172 216-307 (511)
433 KOG0288 WD40 repeat protein Ti 49.8 2.3E+02 0.0049 29.3 11.2 19 34-52 13-31 (459)
434 PRK00846 hypothetical protein; 49.2 65 0.0014 25.4 5.9 55 115-169 10-64 (77)
435 KOG4302 Microtubule-associated 49.2 2.1E+02 0.0046 30.9 11.5 63 99-163 126-191 (660)
436 PRK10920 putative uroporphyrin 49.2 73 0.0016 32.0 7.7 30 62-91 99-128 (390)
437 PF08657 DASH_Spc34: DASH comp 49.2 85 0.0018 29.8 7.9 32 39-77 178-209 (259)
438 COG1729 Uncharacterized protei 49.1 36 0.00078 32.5 5.3 22 233-254 229-250 (262)
439 KOG2751 Beclin-like protein [S 48.4 1.3E+02 0.0029 30.9 9.4 30 257-286 417-446 (447)
440 PF07438 DUF1514: Protein of u 48.2 1.3E+02 0.0028 23.3 7.2 45 29-78 20-64 (66)
441 KOG4005 Transcription factor X 48.1 1.9E+02 0.0041 27.8 9.8 83 62-144 62-144 (292)
442 PF08232 Striatin: Striatin fa 47.9 1E+02 0.0022 26.3 7.4 56 109-164 9-64 (134)
443 PF14073 Cep57_CLD: Centrosome 47.8 1.3E+02 0.0029 27.3 8.5 29 27-55 57-85 (178)
444 KOG0249 LAR-interacting protei 47.7 1.8E+02 0.0039 32.0 10.6 85 62-147 56-140 (916)
445 TIGR01069 mutS2 MutS2 family p 47.7 2.9E+02 0.0063 30.1 12.5 20 66-85 512-531 (771)
446 PF10805 DUF2730: Protein of u 47.6 86 0.0019 25.6 6.7 23 30-52 38-60 (106)
447 PRK06975 bifunctional uroporph 47.6 1.1E+02 0.0023 32.6 9.1 63 98-163 347-409 (656)
448 PF02403 Seryl_tRNA_N: Seryl-t 47.6 1.3E+02 0.0028 23.9 7.7 94 43-137 4-100 (108)
449 PF08647 BRE1: BRE1 E3 ubiquit 47.3 1.5E+02 0.0032 23.7 8.4 8 78-85 54-61 (96)
450 PF06320 GCN5L1: GCN5-like pro 47.3 1.7E+02 0.0037 24.6 12.0 98 69-170 18-116 (121)
451 KOG1760 Molecular chaperone Pr 47.2 1.6E+02 0.0035 25.5 8.4 21 32-52 21-41 (131)
452 PRK10698 phage shock protein P 46.9 2.3E+02 0.005 26.0 14.9 48 96-143 98-145 (222)
453 KOG4593 Mitotic checkpoint pro 46.8 4.2E+02 0.0092 29.0 17.8 25 144-168 239-266 (716)
454 PF04859 DUF641: Plant protein 46.8 14 0.00031 31.7 2.1 46 43-88 75-120 (131)
455 PF09789 DUF2353: Uncharacteri 46.5 3E+02 0.0065 27.1 17.3 156 25-190 63-226 (319)
456 PF01519 DUF16: Protein of unk 46.3 99 0.0021 25.8 6.8 14 132-145 88-101 (102)
457 PF04912 Dynamitin: Dynamitin 46.2 3E+02 0.0065 27.0 15.0 24 29-52 204-227 (388)
458 COG2900 SlyX Uncharacterized p 46.0 57 0.0012 25.6 5.1 51 38-88 5-55 (72)
459 PF10498 IFT57: Intra-flagella 45.9 1.8E+02 0.0038 28.9 9.8 21 99-119 296-316 (359)
460 TIGR02132 phaR_Bmeg polyhydrox 45.9 1.3E+02 0.0028 27.6 8.1 63 95-157 84-153 (189)
461 PF08340 DUF1732: Domain of un 45.8 84 0.0018 25.4 6.2 46 39-84 13-59 (87)
462 PF08898 DUF1843: Domain of un 45.6 20 0.00043 26.6 2.4 23 27-49 31-53 (53)
463 PF07544 Med9: RNA polymerase 45.4 1.5E+02 0.0032 23.2 7.7 59 116-174 19-80 (83)
464 PF01496 V_ATPase_I: V-type AT 45.4 7 0.00015 41.6 0.0 76 71-146 33-116 (759)
465 PF06632 XRCC4: DNA double-str 45.3 3.1E+02 0.0066 27.2 11.3 56 100-168 154-209 (342)
466 PF15188 CCDC-167: Coiled-coil 45.3 1.6E+02 0.0034 23.7 7.7 36 32-67 3-38 (85)
467 PF04100 Vps53_N: Vps53-like, 45.3 1E+02 0.0022 30.6 8.0 75 64-145 20-98 (383)
468 PF15290 Syntaphilin: Golgi-lo 44.9 1.3E+02 0.0029 29.4 8.4 87 30-123 71-164 (305)
469 KOG0240 Kinesin (SMY1 subfamil 44.8 3.5E+02 0.0076 29.0 12.0 15 129-143 481-495 (607)
470 PF10211 Ax_dynein_light: Axon 44.6 2.3E+02 0.0051 25.3 14.8 39 99-137 122-160 (189)
471 PF08172 CASP_C: CASP C termin 44.6 2.8E+02 0.006 26.2 10.7 34 123-156 98-131 (248)
472 PRK11448 hsdR type I restricti 44.5 88 0.0019 35.5 8.2 14 9-22 112-125 (1123)
473 PF06103 DUF948: Bacterial pro 44.4 1.5E+02 0.0032 22.9 7.8 27 97-123 33-59 (90)
474 PF09789 DUF2353: Uncharacteri 44.1 3.3E+02 0.0071 26.9 14.7 127 34-176 30-163 (319)
475 TIGR01554 major_cap_HK97 phage 44.0 78 0.0017 30.6 7.0 19 37-55 2-20 (378)
476 KOG2685 Cystoskeletal protein 43.8 3.8E+02 0.0082 27.5 13.0 58 112-175 330-387 (421)
477 PF14992 TMCO5: TMCO5 family 43.7 3.2E+02 0.0068 26.6 19.1 30 29-58 20-49 (280)
478 PF05377 FlaC_arch: Flagella a 43.5 79 0.0017 23.6 5.3 35 128-162 3-37 (55)
479 PF08537 NBP1: Fungal Nap bind 43.5 2.8E+02 0.0061 27.5 10.6 11 36-46 125-135 (323)
480 PRK09841 cryptic autophosphory 43.5 4.4E+02 0.0095 28.2 14.0 19 150-168 367-385 (726)
481 PF11853 DUF3373: Protein of u 43.2 25 0.00054 36.4 3.5 25 97-121 31-55 (489)
482 PRK14153 heat shock protein Gr 43.0 2.6E+02 0.0057 25.5 10.1 21 145-165 83-103 (194)
483 KOG0962 DNA repair protein RAD 42.9 6.1E+02 0.013 29.7 20.5 199 32-254 745-952 (1294)
484 PF07544 Med9: RNA polymerase 42.7 93 0.002 24.3 6.0 54 25-82 19-72 (83)
485 PRK09973 putative outer membra 42.6 98 0.0021 25.0 6.1 47 98-144 25-71 (85)
486 KOG4739 Uncharacterized protei 42.3 3E+02 0.0066 26.0 10.5 45 127-171 107-151 (233)
487 PF08232 Striatin: Striatin fa 42.2 48 0.001 28.2 4.6 42 71-112 27-68 (134)
488 TIGR00293 prefoldin, archaeal 42.2 1.9E+02 0.0041 23.5 9.3 93 71-163 1-124 (126)
489 PRK10636 putative ABC transpor 42.1 87 0.0019 32.8 7.4 80 52-131 553-632 (638)
490 COG1422 Predicted membrane pro 42.1 2.6E+02 0.0056 26.0 9.5 88 78-194 53-146 (201)
491 KOG1899 LAR transmembrane tyro 41.9 4.1E+02 0.0088 29.1 12.0 137 20-162 167-304 (861)
492 COG4238 Murein lipoprotein [Ce 41.7 48 0.001 26.4 4.1 44 6-51 5-49 (78)
493 PF12761 End3: Actin cytoskele 41.5 86 0.0019 28.9 6.3 98 35-145 97-194 (195)
494 smart00338 BRLZ basic region l 41.4 58 0.0013 23.8 4.4 42 74-115 24-65 (65)
495 PF00435 Spectrin: Spectrin re 41.3 1.4E+02 0.003 21.8 10.2 98 35-136 2-105 (105)
496 PRK06975 bifunctional uroporph 41.2 3.3E+02 0.0071 29.0 11.5 89 76-169 346-434 (656)
497 PF07246 Phlebovirus_NSM: Phle 41.1 2.3E+02 0.0049 27.4 9.3 87 65-158 144-235 (264)
498 KOG1029 Endocytic adaptor prot 41.0 5.7E+02 0.012 28.8 16.3 144 32-175 435-595 (1118)
499 PF01166 TSC22: TSC-22/dip/bun 41.0 20 0.00044 27.1 1.9 27 30-56 10-36 (59)
500 PRK05431 seryl-tRNA synthetase 40.9 1.6E+02 0.0034 29.6 8.7 96 86-196 16-112 (425)
No 1
>PRK09039 hypothetical protein; Validated
Probab=97.90 E-value=0.0065 Score=58.87 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhc-------cchhHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKD-------DSSRAEERLNA 101 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk-------~s~~aee~i~e 101 (287)
++-|..++...+.++..|+++|.+.+.-|.--......++..+.+...++..++..-+-|.. ....++.++..
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence 56777788888888888888888877666666666666676676666666666655554422 12244566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYARC 181 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~~ 181 (287)
|+.+...++......+.+...|.......++.+..|...|+-.+.-..++..+|..+++.|..|-.+ |++.=.. -+.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~-~~~ 197 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNR-YRS 197 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-hHH
Confidence 7788877777777777777777777777777888888888888888889999999998888876544 2221111 123
Q ss_pred HHHHHHHHhhc-ccccchh-c----ccCCcccCCcccccchHHHHHHHHHHHHH
Q 038837 182 TFLKFVKDFSE-KHLPKLT-G----MLVPYLPGKGSILISFMSQVQHQFKRFFL 229 (287)
Q Consensus 182 ~f~k~~~~~~~-ph~~kv~-~----~~~py~~~~~~~skpyi~~~~~~~k~~l~ 229 (287)
.|..=++++.. +--.++. . ..+++|..++.-..|.-.......-..+.
T Consensus 198 ~~~~~l~~~~~~~~~iri~g~~~~~~~~vlF~~gsa~L~~~~~~~L~~ia~~l~ 251 (343)
T PRK09039 198 EFFGRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALI 251 (343)
T ss_pred HHHHHHHHHhCCCCCcEEECCEEEecCCceeCCCCcccCHHHHHHHHHHHHHHH
Confidence 34333343332 1111111 1 33577777777777876555444443333
No 2
>PRK11637 AmiB activator; Provisional
Probab=97.76 E-value=0.0042 Score=61.08 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 038837 32 LIAELQD 38 (287)
Q Consensus 32 l~~eL~q 38 (287)
++.++.+
T Consensus 52 l~~qi~~ 58 (428)
T PRK11637 52 IQQDIAA 58 (428)
T ss_pred HHHHHHH
Confidence 3333333
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.55 E-value=0.0052 Score=52.84 Aligned_cols=122 Identities=22% Similarity=0.243 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
.+|+.|-+.+..++..+|..+....++...++..|..+. +++..|+++++.+...-..+..++.+-++.
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~-------~K~~~lE~eld~~~~~l~~~k~~lee~~~~---- 71 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQ-------KKNQQLEEELDKLEEQLKEAKEKLEESEKR---- 71 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Confidence 468889999999999999998887766555555555554 666666666665533333333333333222
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
....+..+..+..||..+..+++++.+.+.+|.....-.++=-++++.+|+-.
T Consensus 72 ~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 72 KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 22333566666677777777777777777777776666666555666555533
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.49 E-value=0.0091 Score=52.15 Aligned_cols=98 Identities=24% Similarity=0.388 Sum_probs=62.2
Q ss_pred HHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 65 EERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 65 ~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.++++.+.+.+..+..+++++..++.+.....+.....++.++.++........+...+.....+.+..++++...++.+
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666666655544555556666666666666666666666666666777778888888888877
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 038837 145 SEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 145 ~ki~~EQ~~qIqk~E~Al 162 (287)
+.....+..++++.+.-+
T Consensus 171 ~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 171 QENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.45 E-value=0.0078 Score=64.25 Aligned_cols=14 Identities=0% Similarity=-0.090 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 038837 222 HQFKRFFLAFKKFH 235 (287)
Q Consensus 222 ~~~k~~l~sA~~yH 235 (287)
..|...++.|---|
T Consensus 535 ~~y~~Aie~~lg~~ 548 (1164)
T TIGR02169 535 ERYATAIEVAAGNR 548 (1164)
T ss_pred HHHHHHHHHHhhhh
Confidence 45666666655433
No 6
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.029 Score=55.29 Aligned_cols=6 Identities=17% Similarity=0.169 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038837 134 LEEVSL 139 (287)
Q Consensus 134 v~eL~s 139 (287)
+..|..
T Consensus 221 l~~L~~ 226 (428)
T PRK11637 221 LTGLES 226 (428)
T ss_pred HHHHHH
Confidence 333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.26 E-value=0.018 Score=61.19 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~ 86 (287)
.+..+++.++..+..++..+.+...++......+.++...+++....+..++..+.
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 729 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666655555555555555544444444444443333
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.013 Score=64.52 Aligned_cols=146 Identities=19% Similarity=0.298 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhhcCchhhHHHHhHHhHHH-----h-hhHHHHHHHHhhhhccchh-HHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEES---IRKVNGKSNYIEERDKLVDDM-----T-NKIHHLQSLLSKIKDDSSR-AEERLNA 101 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~---~qel~~Kd~~l~e~Ek~i~ek-----s-~kI~sLqsEi~sLkk~s~~-aee~i~e 101 (287)
+..++..|+..|+++|....-. .+.++.+...|+++++.+.+. . ..|..||+.|+.+-.-..- -..++..
T Consensus 832 ~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~ 911 (1293)
T KOG0996|consen 832 LAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEK 911 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHH
Confidence 3345566666666666663222 233455566788888877776 3 7789999999988333222 2233555
Q ss_pred HHHHHHHHHHHHhhhhhh--------------hhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFD--------------IHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAEL 167 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~--------------~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~ 167 (287)
+-+|++.|.+++++++.. ...+|..-.+++++++.|+.++..+..-..|+...+.+++.+++-+..
T Consensus 912 ~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~ 991 (1293)
T KOG0996|consen 912 INEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK 991 (1293)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665555554433 344555666666777777777777777778888888888888888777
Q ss_pred HHHHHHhhhh
Q 038837 168 RAANVQRQLM 177 (287)
Q Consensus 168 ~~~k~q~ea~ 177 (287)
.+..+..+-.
T Consensus 992 ~~~~~k~~~e 1001 (1293)
T KOG0996|consen 992 ELRDLKSELE 1001 (1293)
T ss_pred HHHHHHHHHH
Confidence 7666654433
No 9
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.14 E-value=0.01 Score=54.40 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
++.+++.+..++..++..+.+ ......+.|..+..+..+|..|+.+++..-..-..+..++.++++..+.-.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~-------~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e- 77 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKE-------AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE- 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444555555555555444444 557777788888888888888887776553333344444444444433332
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
.....||.|....+.|+..|-.+|..+..+..+=..+....++-|.+.+..
T Consensus 78 ------r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~ 128 (237)
T PF00261_consen 78 ------RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQE 128 (237)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344444444444444444444444444443333333333333333333
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.97 E-value=0.037 Score=50.68 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
....++..|+.+|..||..++.....|..-...|.+.++...+.......|++. ....++++..||.++....
T Consensus 33 ~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r-------~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR-------EQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888778877888888887777777777777776 4456778888888887776
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 111 AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANV 172 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~ 172 (287)
...+... .+..++..|+..+...|+.++.-.+.--.+|..+|.-|+.+...+-..
T Consensus 106 ~~~ee~e-------~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 106 RRAEEAE-------RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHH-------HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 5554433 344466666666666666666666666677777777777666655443
No 11
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.94 E-value=0.18 Score=55.50 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH-------HHHHHHHHHHHHHHH
Q 038837 41 LKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER-------LNALEEEIRLLWAAS 113 (287)
Q Consensus 41 ~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~-------i~eLEkQVe~L~~el 113 (287)
.+|......+++-.+.++++...+.++--.+..+...|..+...+..+++--.+.+++ +.++.+.|+.|.+.+
T Consensus 302 ~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 302 EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI 381 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444443334444444444444444444434444444 444455555555555
Q ss_pred hhhhhhh-hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh--hHHHHHH---
Q 038837 114 RKNNFDI-HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYAR--CTFLKFV--- 187 (287)
Q Consensus 114 ekqn~~~-~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~--~~f~k~~--- 187 (287)
.+-+.+. ..+.+.-.+.|+|++.|..+||+++..+..-....+++=++...-++++...+.+-.-.+ -.+.+|.
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 566777788999999999999999999888888888888877777777655544422111 1122211
Q ss_pred --------HHhhcccccchhcccCCcccC-----CcccccchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 188 --------KDFSEKHLPKLTGMLVPYLPG-----KGSILISFMSQVQH--------QFKRFFLAFKKFHHELQGFIKQEM 246 (287)
Q Consensus 188 --------~~~~~ph~~kv~~~~~py~~~-----~~~~skpyi~~~~~--------~~k~~l~sA~~yH~qvQ~~I~~~L 246 (287)
-...+||++.+....+-.... .|+ ...||+-.-+ +++.++.+-----|.=+..+++.|
T Consensus 462 lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GP-lG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~ 540 (1074)
T KOG0250|consen 462 LKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGP-LGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIM 540 (1074)
T ss_pred HHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCC-ccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHH
Confidence 112357776665443332211 112 3556644333 444444433222334455678888
Q ss_pred Hhccch
Q 038837 247 VKNKLT 252 (287)
Q Consensus 247 ~~hElt 252 (287)
.++-+-
T Consensus 541 ~~~~~~ 546 (1074)
T KOG0250|consen 541 RRLKIP 546 (1074)
T ss_pred HHcCCC
Confidence 877654
No 12
>PRK09039 hypothetical protein; Validated
Probab=96.92 E-value=0.027 Score=54.60 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
......|..++...+.-+..+.-+|.-|..||+.|++.+......+...|.+-.++..++++|..+|+.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444555555555555554444444444444444444444444444443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=96.92 E-value=0.04 Score=58.35 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
..+..++++++..+..|+..++...+++...+....+++....+...++..|+..++.+
T Consensus 275 ~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~ 333 (880)
T PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEC 333 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999988888888888777777777777777777777777776544
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.89 E-value=0.06 Score=57.04 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHH-----------
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAE----------- 96 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae----------- 96 (287)
.+..++.+|+++|.+.-.|++.+.+.++....=...+..+|+.+.|--..=+.++..+..-++..-.+|
T Consensus 454 ~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~ 533 (697)
T PF09726_consen 454 NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQ 533 (697)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccch
Confidence 446788899999999999999999988887777788999999999998999999999988744422111
Q ss_pred -----------HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH-------hHHHHHHHHHHHHHHHhhhh
Q 038837 97 -----------ERLNALEEEIRLLWAASRKNNFDIHNLESKAL-------DAEDRLEEVSLQVEKMSEIV 148 (287)
Q Consensus 97 -----------e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~-------dAEkkv~eL~sklek~~ki~ 148 (287)
.+..+||.|+.+|..|+..-...+..+|..+. +.++..+.|-+-|.-|++-|
T Consensus 534 ~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 534 ATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 23789999999999999999888888888773 33456777777777776654
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=96.83 E-value=0.063 Score=56.87 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 44 AGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 44 a~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
..++..|.+....+......+.+.+..+.+....+..|..++
T Consensus 261 ~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l 302 (880)
T PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333444444444444444444444444
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.58 E-value=0.16 Score=50.72 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 40 KLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 40 k~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
..++..|+..|.+...++..-++.|.+++..+.....++..++.++..+
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444433344444555556666666666666666665555
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.47 E-value=0.26 Score=51.07 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..|......|+..+..|++.++....+|........+++...+++...-..|..|.+.|+........+|.+||..+..|
T Consensus 153 eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 153 EELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555557777778888888888888888888888888888888888899999999999777777888889999888888
Q ss_pred HHHHhhh
Q 038837 110 WAASRKN 116 (287)
Q Consensus 110 ~~elekq 116 (287)
......+
T Consensus 233 ~qk~~E~ 239 (546)
T PF07888_consen 233 TQKEKEQ 239 (546)
T ss_pred HHHHHHH
Confidence 7666433
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.43 E-value=0.17 Score=56.02 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
+.+++.+++.++..++..+.+...+++.....+.+..++...+..+..-..+...++++++..+..
T Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555555555554443
No 19
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.42 E-value=0.21 Score=43.00 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hcc--chhHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDD--SSRAEERLNALEEEIRLL 109 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~--s~~aee~i~eLEkQVe~L 109 (287)
....+++..++..||.....+.+++.+=.-.+..+|..+.....++.....-++.- +.+ .-....+|.-||++++..
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 34556666677777766666666666666777777766666666666665555544 211 112334466666666666
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
.+.+..-+.+..-..-+|...|++|..|...-+..++
T Consensus 93 e~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 93 EKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 6666666666666666666666666666655555443
No 20
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.38 E-value=0.22 Score=46.67 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
.....|+.+++.++..+.+.+.+...+..+-..-++.+..+..++.+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333333333333333333
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.35 E-value=0.28 Score=50.86 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHH---------------------HHHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHH---------------------LQSLLSKI 88 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~s---------------------LqsEi~sL 88 (287)
..|..+..+++.+|..||..|...++.....+..+.++..+..+++..... ++.+.+.|
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~L 288 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEAL 288 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 566677788889999999999888888766655555554444444433322 22233333
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 89 KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 89 kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+..--.+++++.+-+.++..|.++++....-.+..
T Consensus 289 keqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 289 KEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455667777888888888887776654333
No 22
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.31 E-value=0.59 Score=47.07 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
.++-++++.|.+++.........+++.=.+-+.-+-+...+..++...-.|+++-.++++.
T Consensus 157 ~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~ 217 (420)
T COG4942 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNS 217 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777766666666666665555555555555555555555555555555554433
No 23
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.22 E-value=0.24 Score=44.85 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=49.7
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH--hHHHHHHHHHHHHHHHh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKAL--DAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~--dAEkkv~eL~sklek~~ 145 (287)
|.-=.+++.-|+.-.+|+-+|+..--.+.++..+++..+.....++.+.+.....|+..+. .... -++|+.+|+.++
T Consensus 53 e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~ 131 (194)
T PF15619_consen 53 EDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLE 131 (194)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHH
Confidence 3333666666777777777665544444444444444444444444444444443333222 1111 256666666666
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 038837 146 EIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 146 ki~~EQ~~qIqk~E~Alk~ 164 (287)
....+.-.+|+.+|+-+..
T Consensus 132 ~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 132 QKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666664443
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.11 E-value=1.1 Score=50.44 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 221 QHQFKRFFLAFKKFHHELQGFIK 243 (287)
Q Consensus 221 ~~~~k~~l~sA~~yH~qvQ~~I~ 243 (287)
+..|+.-+..-...+.+++.++.
T Consensus 943 ~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 943 VNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 25
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.11 E-value=0.01 Score=57.72 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccch
Q 038837 14 LFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSS 93 (287)
Q Consensus 14 ~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~ 93 (287)
+.+++++||---..+ .+|.+++.++.+||+.++..+.-+.+=...+..++-.++++...|+.++++|.+|
T Consensus 13 V~LILslTss~s~s~-----GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL----- 82 (326)
T PF04582_consen 13 VGLILSLTSSISTSP-----GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSL----- 82 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhcccCCCCCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 456777776422222 5788999999999999999886666666666666666666666666666666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
...|..|+..|..|..++-.........++-..+.-..|..+...+-+|..-+.-|--.|-.+|+.++--
T Consensus 83 --sstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 83 --SSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 2345566666666666666666777777777778888889999999999999999999999999988743
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=96.11 E-value=0.43 Score=50.44 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=11.2
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
.++.+...++.++.++..+++.+++...
T Consensus 663 ~l~~~~~~l~~~l~~l~~~~~~l~~~i~ 690 (880)
T PRK03918 663 ELREEYLELSRELAGLRAELEELEKRRE 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333
No 27
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=96.10 E-value=0.021 Score=44.12 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=42.3
Q ss_pred HhHHhHHHhhhHHHHHHHHhhhhccchhHH-------HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHH
Q 038837 67 RDKLVDDMTNKIHHLQSLLSKIKDDSSRAE-------ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAE 131 (287)
Q Consensus 67 ~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae-------e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAE 131 (287)
+++.+.||...|+.|+.|-+.|-+.-..-. .++.++|+++..|++.+++...+...|+.++..+|
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456677777777777777777722222211 33677777777777777777777777777766543
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.06 E-value=0.35 Score=51.99 Aligned_cols=62 Identities=18% Similarity=0.375 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------cCchh-hHHHHhHHhHHHhhhHHHH-------HHHHh
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKV------------NGKSN-YIEERDKLVDDMTNKIHHL-------QSLLS 86 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel------------~~Kd~-~l~e~Ek~i~eks~kI~sL-------qsEi~ 86 (287)
.++... ..+..+...+.+|++.++.+.++. -.+|. ..+-..++|.+|..+|.+| ++||.
T Consensus 177 ~~~~~~-~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~ 255 (775)
T PF10174_consen 177 EDNEAL-RRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIY 255 (775)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 478999999999999999998888 13333 4445688889999998886 99999
Q ss_pred hhh
Q 038837 87 KIK 89 (287)
Q Consensus 87 sLk 89 (287)
.|+
T Consensus 256 ~L~ 258 (775)
T PF10174_consen 256 RLR 258 (775)
T ss_pred HHH
Confidence 993
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=96.03 E-value=0.28 Score=51.88 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=14.2
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
+.+..+.+...++.+..+.+.++..+..+++.+.+
T Consensus 660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~ 694 (880)
T PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.99 E-value=0.043 Score=48.83 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
.++.||.++...-..+..++...+.+ +.+++..+.+....|..|+.++..|...-.+-++.+.++++-++.|+
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~-------l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDE-------LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc-------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544 44444555555555555666655553333444566666666666666
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHH
Q 038837 111 AASRKNNFDIHNLESKALDAEDR 133 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkk 133 (287)
+|+-..|-....+|.+....++-
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555444444443333
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.98 E-value=0.68 Score=46.38 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHhhhHHHHHHHHhhhhccchh-------HHHHHHHHHHHHHHHHHHHh
Q 038837 72 DDMTNKIHHLQSLLSKIKDDSSR-------AEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 72 ~eks~kI~sLqsEi~sLkk~s~~-------aee~i~eLEkQVe~L~~ele 114 (287)
.....+|..|++++.++..+-.+ .+..+..++.++..+++++.
T Consensus 230 ~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555333333 22334444444444444443
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.95 E-value=0.24 Score=54.56 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH--HhhhhccchhHHHH-HHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 47 ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL--LSKIKDDSSRAEER-LNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 47 ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE--i~sLkk~s~~aee~-i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
|..|++....++..+..+.+.++.++.+...|++|.|. ....+-+..+...+ |...+++|+...+.+++...+.+.+
T Consensus 688 e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~ 767 (1074)
T KOG0250|consen 688 EKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHI 767 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777778888888888888888883 44444445554443 6777777777777777777777777
Q ss_pred HhhhHhHHHHHHHHHHHHHH
Q 038837 124 ESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 124 EsrA~dAEkkv~eL~sklek 143 (287)
+.+++..+........++..
T Consensus 768 ~~e~~e~~~~~~~~~~~l~~ 787 (1074)
T KOG0250|consen 768 ELEAQELEEYYAAGREKLQG 787 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655555543
No 33
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.87 E-value=0.56 Score=44.70 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKV 57 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel 57 (287)
.+..++.+++.++.+|+..+......+
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655554433333
No 34
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.78 E-value=1.4 Score=39.86 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=78.2
Q ss_pred hhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH---------------HHhhhhh
Q 038837 54 IRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA---------------ASRKNNF 118 (287)
Q Consensus 54 ~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~---------------elekqn~ 118 (287)
.+.|..-++.=.++-.+|.-....|..|...+-..+....+.+.++.+.+.++.++.+ +-++...
T Consensus 46 ~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~ 125 (194)
T PF15619_consen 46 EKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQR 125 (194)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 3345445555567788888889999999888877766666666665555544444442 3445566
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKMSEIVTE----QWIQIQHLEQALHMAELRAAN 171 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E----Q~~qIqk~E~Alk~ae~~~~k 171 (287)
+.+.++.++.++++++.+|.-+++-..+.-.- ...++..+...++.+.++.-.
T Consensus 126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888776665332 245666666666666665443
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.63 E-value=0.56 Score=54.82 Aligned_cols=140 Identities=23% Similarity=0.229 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..++.+..++-..+..+++++++..+.........++.+..+++....|..++..+..+.......+.++..|++++..+
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544444444444444555555666666555555555444555556666666666655
Q ss_pred HHHHhhhhhhhhhHH--------------hhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFDIHNLE--------------SKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 110 ~~elekqn~~~~~LE--------------srA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
...+.+.++++-.+| .+++.+.|...-|.+.++.+++....++....++|.+.+-.+.++
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444 444444444444445555555555555555555554444333333
No 36
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.59 E-value=0.44 Score=43.69 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhh-------hHHHHHHHHhhhhccchhH-------
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTN-------KIHHLQSLLSKIKDDSSRA------- 95 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~-------kI~sLqsEi~sLkk~s~~a------- 95 (287)
..||.+|.+++.+....++.+.+....+.+|...++.+++.++.+.+ ++..|..|+..|+.....+
T Consensus 34 v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~ 113 (202)
T PF06818_consen 34 VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQC 113 (202)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhh
Confidence 56788888888888888888888888888888888888777666554 4444455555442221111
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 96 ----------------EERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 96 ----------------ee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
..-+..|..+|+.|+.+|..-+...
T Consensus 114 ~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~ 154 (202)
T PF06818_consen 114 QLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRR 154 (202)
T ss_pred ccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhH
Confidence 1115667778888887777655443
No 37
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.48 E-value=1 Score=47.13 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc---chhHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD---SSRAEERLNALEEEIRLL 109 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~---s~~aee~i~eLEkQVe~L 109 (287)
..++++|+.+|..|++.|++...+++.-...+.+.+..+.++......++.++...++- -.++++++..|+..|+.-
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888999999999999999999988755433 556777776666666554
Q ss_pred HHHHhh
Q 038837 110 WAASRK 115 (287)
Q Consensus 110 ~~elek 115 (287)
..-+..
T Consensus 407 ~~rl~~ 412 (594)
T PF05667_consen 407 EQRLVE 412 (594)
T ss_pred HHHHHH
Confidence 443333
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.45 E-value=0.085 Score=46.93 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=45.6
Q ss_pred HhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 70 LVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 70 ~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
.+.+.+.++..|+.|+..+.+..+....++..+..+++.|...+......+..++......+.++..|...++...+.+.
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777888888887777777788888888888888888888888888888888888888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 150 EQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 150 EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
....-+.-+-=.+-++|+.+.+.+.|-.
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666667777666666643
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.45 E-value=0.81 Score=52.49 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
...|.=+++. +.......+..++|..++..+.+.+.++.+...++..|+.+.+...+.....++ +..+..++..+
T Consensus 279 eERR~liEEA----ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l 353 (1486)
T PRK04863 279 NERRVHLEEA----LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERY 353 (1486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444 556688888888899999999999999999999999999998877443222221 22223334444
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
..+++..+......+.....++..+.++..+++.++.-..+...++.++++++..++.+.
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444433
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.42 E-value=0.63 Score=54.47 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 132 DRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 132 kkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
+....|-..+..++....+-+.++.++++-++..+.++...+.+
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334443344444444444444444444444444444333
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.38 E-value=0.75 Score=40.13 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038837 36 LQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~ 58 (287)
+.++..++.+++..+.+...++.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333333
No 42
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.35 E-value=0.91 Score=47.74 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------hhcCchhhHHHHhHHhHHHhhhHHHHHH---HHhhhhccchhHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIR-------KVNGKSNYIEERDKLVDDMTNKIHHLQS---LLSKIKDDSSRAEERL 99 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~q-------el~~Kd~~l~e~Ek~i~eks~kI~sLqs---Ei~sLkk~s~~aee~i 99 (287)
..|..++..|+-.+..|+..+....+ -...+++-|.++|..+++.........+ .+.|-|.+-+.|-.+.
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhH
Confidence 46667777777777777666554432 2345666667766666655555433333 3334466677788888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHH-HHHHHHHHHHhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRL-EEVSLQVEKMSE 146 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv-~eL~sklek~~k 146 (287)
.+|.+|+..|+...-+.+.++-.|.+... +|..| .+|..++..++.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq-~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQ-SEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777655544433 33333 355555555543
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=0.84 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038837 32 LIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
+..+++.++.++..++..++...
T Consensus 756 le~~l~~~~~~le~~~~~l~~~~ 778 (1311)
T TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIM 778 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 44
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=1.8 Score=41.34 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
.-.+++=..|..--.+.+.+..+|++...+.|..+..|+++.....+....-+....
T Consensus 151 e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a 207 (265)
T COG3883 151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEA 207 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444554455566667777777888888888888887776666554444433
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.24 E-value=0.7 Score=43.35 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred HhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038837 113 SRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLE 159 (287)
Q Consensus 113 lekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E 159 (287)
.++.+.+.++++.+...+++.+.+|.-+++++++--++-..++..+|
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443344444333
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.11 E-value=1.6 Score=48.83 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH-hHHhHHHhhhHHHHHHHHhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER-DKLVDDMTNKIHHLQSLLSK 87 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~-Ek~i~eks~kI~sLqsEi~s 87 (287)
..++.+++.++..+..|.+...+...+.+.--..|+.. ......+..++..++.+...
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~ 413 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAE 413 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666666555544444332 44455555555555555443
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.02 E-value=0.86 Score=46.63 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=32.4
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
.......+.+...|++..+..--.+.+-+..|..-|+.|+.++++.+.++..+..+...+...|..|+.++.
T Consensus 276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~ 347 (522)
T PF05701_consen 276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELN 347 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence 333334444444444444333333333344444444444444444444444444444444444444444443
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.99 E-value=0.42 Score=50.83 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHH-------HhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDD-------MTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~e-------ks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
+.+|.+...||+.+.....||+.|++.+..+|..+++ ...++..|.+.+ ..|++.-..|
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL--------------~amqdk~~~L 606 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSAL--------------SAMQDKNQHL 606 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--------------HHHHHHHHHH
Confidence 4589999999999999999999999999998876632 223444455544 3344444444
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQI 155 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qI 155 (287)
.+-|-.-+.=+-.|=+-.+||.+.++.+...+-+=++-..|-|.+|
T Consensus 607 E~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 607 ENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444444555556666666666555555444444444333
No 49
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.85 E-value=0.58 Score=44.97 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 41 LKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 41 ~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
-||..||++++...+|=.-|---|+-+|--.+---.+...=.++++.||+..-..-+....||+..++|.+|+---....
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 48999999999988877777777777776665555555555666666666666666667778888888888776666666
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMY 178 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p 178 (287)
.-||...+-+.+ +|..+|+-++.-+.+|-|.|..+.+
T Consensus 98 ~~lEgQl~s~Kk---------------------qie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 98 NFLEGQLNSCKK---------------------QIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666655555544 6666666666666777777766653
No 50
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.81 E-value=2.7 Score=38.32 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
..++.+|.+++.....|...|++.-
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777644
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.75 E-value=0.65 Score=48.36 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=56.8
Q ss_pred HHhHHHhhhHHHHHHHHhhh--hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 69 KLVDDMTNKIHHLQSLLSKI--KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 69 k~i~eks~kI~sLqsEi~sL--kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
+.+.+...+|..++.+++.+ +-...++++.+..+++..+.+.+++.+.+.++..++.+....++.++.+..+++++.+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666 2234445567777777777777777777777777777777777777777777777666
Q ss_pred hhHHHH
Q 038837 147 IVTEQW 152 (287)
Q Consensus 147 i~~EQ~ 152 (287)
...+..
T Consensus 471 ~~~~~~ 476 (650)
T TIGR03185 471 QKINAF 476 (650)
T ss_pred HHHhhh
Confidence 655433
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=0.84 Score=50.41 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHH----HhhhHHHHHHHHhhhhcc----chhHHHH-----
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDD----MTNKIHHLQSLLSKIKDD----SSRAEER----- 98 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~e----ks~kI~sLqsEi~sLkk~----s~~aee~----- 98 (287)
+-.++.+++..|-.+|++|.+...-++..++.++.+|+-+.+ ++.....|+.+|.-.+.. +..-++.
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999888888888888888776654 556677777777766322 2222221
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 99 -----LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 99 -----i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
..+|+++++.++..++..+.....|++...+.+-+|...-..+++.+.-..+|+.+.+..
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777777777777777777777777666777665543
No 53
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.71 E-value=0.87 Score=49.07 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
+-......+..++-.+++.-++..-.|.+=.+.++.....++|.+.+|..|++++.+.++..+.++.++..+
T Consensus 586 a~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~-------- 657 (769)
T PF05911_consen 586 ADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM-------- 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 333444455555555555555555555556677888888888888999999999988777777666665443
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 111 AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
......++.++.++|..++++..|+..++.-..+-+.--..++.--+-.++++.+...+
T Consensus 658 ------~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 658 ------KESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 33445777888888888888888888887776665555555555444444555554443
No 54
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=1.6 Score=45.53 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhH-------------------------------------
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVD------------------------------------- 72 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~------------------------------------- 72 (287)
....-++-.|++.+..+|-.|+-..|.|+.||+.|.++....+
T Consensus 239 ~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerL 318 (654)
T KOG4809|consen 239 LTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERL 318 (654)
T ss_pred hhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHh
Confidence 3445677888999999999999999999999999998843322
Q ss_pred ---------HHhhhHHHHHHHHhhh-------hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 73 ---------DMTNKIHHLQSLLSKI-------KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 73 ---------eks~kI~sLqsEi~sL-------kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
||..+|.+..-|.--| .....+.+++...|.+..-.|.....+-.++.-++|--.+--..+.-.
T Consensus 319 keqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~k 398 (654)
T KOG4809|consen 319 KEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSK 398 (654)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2222233222222222 111222333344555555555555555556655555555555555566
Q ss_pred HHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 137 VSLQVEKMSEI------VTEQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 137 L~sklek~~ki------~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
++++|.+..++ +.|=-.+|+++|.+.-.-+.+..+||.+..
T Consensus 399 me~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevd 445 (654)
T KOG4809|consen 399 MEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVD 445 (654)
T ss_pred HHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555 334446777777777777777777777654
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.69 Score=48.60 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=96.3
Q ss_pred ccCcccchHHHHHHH---HHHHHHHHHHHHHHHHH---hhhhcCchhhHHH-----H-hHHh-----HHHhhhHHHHHHH
Q 038837 22 SQNQQHSQQHLIAEL---QDAKLKIAGLETMLEES---IRKVNGKSNYIEE-----R-DKLV-----DDMTNKIHHLQSL 84 (287)
Q Consensus 22 s~~~~~~~~~l~~eL---~qLk~kIa~LES~i~e~---~qel~~Kd~~l~e-----~-Ek~i-----~eks~kI~sLqsE 84 (287)
|-+-.+++++|.+-+ +..+.|+.+.|..+.+. .+...-|+..|.. . ++.+ +|+.-+++..--+
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~e 416 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERRE 416 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccc
Confidence 446668899998887 67888999999988887 5555555554432 2 1111 1111222222222
Q ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHH----------HHHHHHHHHHHhhhhHHHHHH
Q 038837 85 LSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDR----------LEEVSLQVEKMSEIVTEQWIQ 154 (287)
Q Consensus 85 i~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkk----------v~eL~sklek~~ki~~EQ~~q 154 (287)
+.+..+.-..-++++..|+.++..|+.+++.+..+++.|+++...+.++ ++.+-.+++.+++--.|++..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333455677777777777777777777777777777666544 445666677778888888888
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhc
Q 038837 155 IQHLEQALHMAE-LRAANVQRQLMY 178 (287)
Q Consensus 155 Iqk~E~Alk~ae-~~~~k~q~ea~p 178 (287)
+..||+-|-..+ |.+|.-.-+.+|
T Consensus 497 ve~L~~~l~~l~k~~~lE~sG~g~p 521 (652)
T COG2433 497 VEELERKLAELRKMRKLELSGKGTP 521 (652)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCcc
Confidence 888887665544 333333344444
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.32 E-value=3.7 Score=42.31 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=40.2
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhcc---chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDD---SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~---s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
...+.........|..|++.++.. +-+.-+.+..+++|+..|.+...........-..--.+.+++++++..+++.+
T Consensus 316 ~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leei 395 (569)
T PRK04778 316 PDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEI 395 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444444555555666655333 01111223333333333333333222222222222334444444555555444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 038837 145 SEIVTEQWIQIQHLEQALHMAEL 167 (287)
Q Consensus 145 ~ki~~EQ~~qIqk~E~Alk~ae~ 167 (287)
++--.+-+..|+.++..-.-|+.
T Consensus 396 e~eq~ei~e~l~~Lrk~E~eAr~ 418 (569)
T PRK04778 396 EKEQEKLSEMLQGLRKDELEARE 418 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333333
No 57
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.32 E-value=3.2 Score=42.55 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
|......+......+.+|.+|++..|..-....++..+-...|..|..++.+.+.+...+.+.-.++.....++...|++
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqq 376 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQ 376 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 33333333333344444444444333333333344455555555555555555555555444444444333444444333
No 58
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=2.3 Score=47.77 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc----------------
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD---------------- 91 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~---------------- 91 (287)
..-..+..|.-+..+|.-||..|++...+ +.++++....-+..|+-+++|++.|..-
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek~~~~-------~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEKARRK-------KSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666777777777777765533 3444444455555555566665544211
Q ss_pred ---chhHHHH------HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 92 ---SSRAEER------LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 92 ---s~~aee~------i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
....++. ..-+.+++.....+++--.++..-|..+.+.+-++|++|..+|..+.....|-+.-+..+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~ 547 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDL 547 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 122334555556666777777778888888888999999999988776666555444433
No 59
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.23 E-value=3.4 Score=39.35 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAED 132 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEk 132 (287)
..+.++..++.++.....+...+++....++.
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 231 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQL 231 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.19 E-value=1.7 Score=36.66 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
.-++.|.+.|.++|+.+.... +.++.++..=.+....|..|..+.+. +.+..+++..|.+++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~-------~el~~l~~~r~~l~~Eiv~l~~~~e~-----------~~~~~~~~~~L~~el 77 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQ-------EELARLEAERDELREEIVKLMEENEE-----------LRALKKEVEELEQEL 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445666677777766666644 33444444444445555555555433 345555666677777
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQ 151 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ 151 (287)
...+.+-.++=-..++-...|+||-.+|.+|..+-..|
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665667777888999999988887776554
No 61
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.18 E-value=2.3 Score=37.08 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038837 148 VTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 148 ~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
..+-+..|..+++-..++++..
T Consensus 154 ~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 154 VEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677888888888887764
No 62
>PRK01156 chromosome segregation protein; Provisional
Probab=94.14 E-value=1.6 Score=46.70 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=5.5
Q ss_pred cchhhhhhhhHHH
Q 038837 250 KLTAALANEELVF 262 (287)
Q Consensus 250 Elt~~lAtkeLvW 262 (287)
|-|.+|-.....+
T Consensus 833 Ept~~lD~~~~~~ 845 (895)
T PRK01156 833 EPTAFLDEDRRTN 845 (895)
T ss_pred CCCCcCCHHHHHH
Confidence 3344444444444
No 63
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.08 E-value=0.71 Score=48.05 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCc--hhhHHHHhHHhHHHhhhHHHHHHHHhh
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGK--SNYIEERDKLVDDMTNKIHHLQSLLSK 87 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~K--d~~l~e~Ek~i~eks~kI~sLqsEi~s 87 (287)
.++.++..++..+|..|++..+.|..- ++.++++++.+.+.+.+|..++.++..
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~ 446 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEE 446 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666543 234444454444444444444444433
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.93 E-value=5 Score=36.73 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=23.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 125 SKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 125 srA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
+-+++-..++++|..-|+-.-.++.|-+-.|.++|+-+
T Consensus 151 a~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 151 AILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555566666666666666666677777777654
No 65
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=93.65 E-value=0.67 Score=40.00 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
-++||++.+..|++|.+.+....+.+.+|-..+.+.++-+.| .+|--+.---..+ -.+...-.+ .+|+.+++
T Consensus 13 a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P-~~~~~~~wq-----lkvr~a~~ 84 (136)
T PF11570_consen 13 ARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNP-PHEYGRGWQ-----LKVRRAQK 84 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-T-TSSCHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCC-ccccccHHH-----HHHHHHHH
Confidence 478999999999999999999999999999999999988888 2222111110111 112222222 56677777
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
++.-.+.+.. -|++++.++++.|-..+.+
T Consensus 85 dv~nkq~~l~-------AA~~~l~~~~~el~~~~~a 113 (136)
T PF11570_consen 85 DVQNKQNKLK-------AAQKELNAADEELNRIQAA 113 (136)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHH-------HH
T ss_pred HHHHHHHHHH-------HHHHHHHHhhhhhHHHHHH
Confidence 6655544433 4555555555555444333
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.55 E-value=4.6 Score=35.08 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
+..+|...+++-+.|+..|.....+|..-..+.......-.-...-|.+|+.+++.+...-.+.+..+..+-++-+.|-+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444433344444443333444445555555555533333344444444455555555
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
.+.+.+.+...||++-.+.+.-++++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555555555555555544444433
No 67
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.55 E-value=4.4 Score=37.51 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 45 GLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 45 ~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.|++.++..+.+|++....+..-...+......+.+|..+++.|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L 64 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENL 64 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.42 E-value=2.9 Score=48.89 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH--------H
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER--------L 99 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~--------i 99 (287)
+|..||.++...-.||..|.+.|+-...++--=+..+.++.-.++++...+..|+.+.+--|....+..++ +
T Consensus 1230 sN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~ 1309 (1822)
T KOG4674|consen 1230 SNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDY 1309 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 34667777777777777777777777777666667777777777777777777777766555554443333 3
Q ss_pred HHHHHHHHHHHHHHh
Q 038837 100 NALEEEIRLLWAASR 114 (287)
Q Consensus 100 ~eLEkQVe~L~~ele 114 (287)
..|.++|..|++++.
T Consensus 1310 ~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555554
No 69
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.37 E-value=5.1 Score=45.00 Aligned_cols=155 Identities=16% Similarity=0.241 Sum_probs=84.0
Q ss_pred ccchHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHH
Q 038837 26 QHSQQHLIAELQDAKLK--------IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEE 97 (287)
Q Consensus 26 ~~~~~~l~~eL~qLk~k--------Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee 97 (287)
-++...++++|++++.. +..||.-++-. ++.+.=....++..+.+..-.+.+..++.+++++++.....-+
T Consensus 22 ~p~~~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l-~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~ 100 (1109)
T PRK10929 22 APDEKQITQELEQAKAAKTPAQAEIVEALQSALNWL-EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPP 100 (1109)
T ss_pred CCCHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccc
Confidence 36666788888877542 22333322221 1222223455666777888888888888888877433211111
Q ss_pred H--HHHHHHHHHHHHHHHhhhhhhhhhHHhhh--------------HhHHHHHHHHHHHHHHH----hhhhHHHHHHHHH
Q 038837 98 R--LNALEEEIRLLWAASRKNNFDIHNLESKA--------------LDAEDRLEEVSLQVEKM----SEIVTEQWIQIQH 157 (287)
Q Consensus 98 ~--i~eLEkQVe~L~~elekqn~~~~~LEsrA--------------~dAEkkv~eL~sklek~----~ki~~EQ~~qIqk 157 (287)
+ ..+||.+.-.-..++-..+.+.....++. .++-.++++.+..+... ....+.| ...-+
T Consensus 101 ~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~-~~~lq 179 (1109)
T PRK10929 101 NMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQ-LTALQ 179 (1109)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHH-HHHHH
Confidence 1 35555555544444444444444444444 55666666666655431 1122222 23346
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhH
Q 038837 158 LEQALHMAELRAANVQRQLMYARCT 182 (287)
Q Consensus 158 ~E~Alk~ae~~~~k~q~ea~p~~~~ 182 (287)
+|+++-.++..+.+....+.+.+..
T Consensus 180 ae~~~l~~~~~~l~~~l~s~~~~~~ 204 (1109)
T PRK10929 180 AESAALKALVDELELAQLSANNRQE 204 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777776666665543
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.25 E-value=0.83 Score=41.76 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
.++..+.+|..+++.|+..+++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544433
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.15 E-value=7.4 Score=36.30 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=22.5
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
..+.....+..........++.|..+++.+...+..--.+|..+|+-+
T Consensus 206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 333333334444444445555555555555555554444444444433
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.02 E-value=3.9 Score=42.18 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHH-------HHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAE-------ERLNALEE 104 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae-------e~i~eLEk 104 (287)
+..++++++.+|......|.+ ..+...+..+.+....|.+|-.-++.=....-.++ +.+..+++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~---------l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEE---------LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHh---------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445666666666665555555 55666666677777777777666664433322333 33566666
Q ss_pred HHHHHHHHHhhhhhh---hhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 105 EIRLLWAASRKNNFD---IHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 105 QVe~L~~elekqn~~---~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
+.+.|..+++..+.. .+.--.+....++.++++...++.+.
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555 01112224444455555555544433
No 73
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.00 E-value=7.4 Score=40.90 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------------------------------chhhHHHHhHHhHHHhhhH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNG-------------------------------KSNYIEERDKLVDDMTNKI 78 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~-------------------------------Kd~~l~e~Ek~i~eks~kI 78 (287)
.+|..+|++++..|..++..++....+++. .+.+|++++.+++..+.++
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl 410 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRL 410 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766555544433333 3445555555555555555
Q ss_pred HHHHHHHhhhhccchh----HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 79 HHLQSLLSKIKDDSSR----AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 79 ~sLqsEi~sLkk~s~~----aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
..|+++-+.-...-.+ ..+....-+.+-.....+++..+.+...++..+..=|.....|..+++++.+-
T Consensus 411 ~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 411 VELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555544432111111 00111222233334445555666666666666666666666666666665443
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.00 E-value=7.3 Score=41.80 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHH----hhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHH
Q 038837 29 QQHLIAELQDAKLKIAG-------LETMLEES----IRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEE 97 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~-------LES~i~e~----~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee 97 (287)
+++|-++|...+.-... ||..+.-. .+-...|+..++++.+.-...+..++.|+..+.+|+....--..
T Consensus 291 qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqq 370 (786)
T PF05483_consen 291 QEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQ 370 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777655544333 33333322 23335678888888888888899999999999999665555556
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANV 172 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~ 172 (287)
++..+|+|...|-.++.+-+.+.+..=---++-|-.+++|.-.|+.-++.-++ +.++.++...|+.++.++...
T Consensus 371 r~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~e-kk~~eki~E~lq~~eqel~~l 444 (786)
T PF05483_consen 371 RLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDE-KKQFEKIAEELQGTEQELTGL 444 (786)
T ss_pred HHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999988887755444455666688888888888886666 566888888899888887665
No 75
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.97 E-value=6.9 Score=35.44 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..|+.++.++|.+..+.+..+.+..++-+.=.+.|+..+..+.+...++...+..-.+| ..+..++..+++++..|
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L----~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL----QNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999889999999988888877766655554333 23444556666666666
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK-MSEIVTEQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek-~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
+-+-+-.......++..-.+...+.+..-..|.+ .+--|-=--++++.+..++...+..+..+-..+.
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5554444444444443333333333322222211 0001111224566666666666666665555544
No 76
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.94 E-value=3.2 Score=44.91 Aligned_cols=99 Identities=15% Similarity=0.259 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..|+.+|.....+-..|-+.++....+|..|...+.++...+.........+.+||+-++..---.+.+|.-|.+.++.|
T Consensus 325 ~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~L 404 (775)
T PF10174_consen 325 EVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777788888888888888888888888888888888888888888776444333445566666666666
Q ss_pred HHHHhhhhhhhhhHHhhhH
Q 038837 110 WAASRKNNFDIHNLESKAL 128 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~ 128 (287)
...++.-......+..|..
T Consensus 405 ee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 405 EEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666555554444444444
No 77
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=92.90 E-value=0.73 Score=42.11 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhh-HHHHhHHhHHHhhhHHHHHHHHhhhhcc--chhHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNY-IEERDKLVDDMTNKIHHLQSLLSKIKDD--SSRAEERLNALEEEI 106 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~-l~e~Ek~i~eks~kI~sLqsEi~sLkk~--s~~aee~i~eLEkQV 106 (287)
..|+.||.+|..++...|...+.+...-+++-.. =.|+|.+..=|..+...+.+ ..-+.| .....+-|..+|.||
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE--GRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHHHH
Confidence 3366666666666666666666542222222233 34669999989999888876 222222 344566799999999
Q ss_pred HHHHHHHhhhhhhhhhH
Q 038837 107 RLLWAASRKNNFDIHNL 123 (287)
Q Consensus 107 e~L~~elekqn~~~~~L 123 (287)
+.|..-|..-+.+.+.|
T Consensus 177 ~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999997766665554
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.86 E-value=7.3 Score=41.93 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDA----EDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dA----Ekkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q 173 (287)
+......||..|+.++...+.+...++.+..+. +..++.|..++...++...+...+|..+|.=|+.+-...-..+
T Consensus 360 Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q 439 (717)
T PF09730_consen 360 KYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQ 439 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 356667889999999999999999999999888 5667999999999999888888888888887776655544443
No 79
>PRK12705 hypothetical protein; Provisional
Probab=92.77 E-value=2.5 Score=43.65 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHhhc
Q 038837 4 AAHLTLLLVILFWSFTL 20 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (287)
++-+.||+++++++|-.
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (508)
T PRK12705 4 SILLVILLLLIGLLLGV 20 (508)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33445555555555443
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.77 E-value=15 Score=38.70 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh--------------hccchhHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI--------------KDDSSRAEE 97 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--------------kk~s~~aee 97 (287)
+..+++.|+.+-..|+-+|.++ .+..+|.+.+++ ....+..++.-+++=++.+ +..--..|+
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~-ek~~~~~eslre---~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINER-EKDPGKEESLRE---KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666643 233444444333 3333333333344333333 222223445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhh---hHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESK---ALDAEDRLEEVSLQVEKMSEIVTEQWIQIQH 157 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsr---A~dAEkkv~eL~sklek~~ki~~EQ~~qIqk 157 (287)
.+..|.++++.|++-++.|+....-+|-. -+..++-|+..+++++.+.+-+-+++.+|+.
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56777777777776666665544433322 2233444555556666655555555555543
No 81
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.66 E-value=4.7 Score=47.26 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHH----hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 038837 41 LKIAGLETMLEESIRKVNGKSNYIEER----DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKN 116 (287)
Q Consensus 41 ~kIa~LES~i~e~~qel~~Kd~~l~e~----Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekq 116 (287)
++|-.|+-.|....+++..+.+.+.++ +.-+.+-...|..+++++.++...-.-+.+.+..|+-++..|.+.|+..
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444332 3344444455555555555554444445555666666666666666655
Q ss_pred hhhhhhHHhh--hHhHHHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 117 NFDIHNLESK--ALDAEDRLEEVSLQVEKM----------SEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 117 n~~~~~LEsr--A~dAEkkv~eL~sklek~----------~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
-.....+.+. -.|+-.++..|...++++ ..-..+-...+...|++|...+.++-..+..
T Consensus 885 ~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~ 955 (1822)
T KOG4674|consen 885 KTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLE 955 (1822)
T ss_pred HHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555433 333333333333333333 2222233334445566666555554444433
No 82
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.61 E-value=8.5 Score=40.72 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhHHhhhHhHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHH
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFDI--------HNLESKALDAEDRLEEVSLQVEKMSEIVTE----QWIQIQHLEQA 161 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~~--------~~LEsrA~dAEkkv~eL~sklek~~ki~~E----Q~~qIqk~E~A 161 (287)
++...|..||.+|+.|...+.+.|... +.+.....--|+-+..|+..+++++....+ -+.+|.++|+=
T Consensus 246 ~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~ 325 (629)
T KOG0963|consen 246 DAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKE 325 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668999999999999999888654 344444555667777888888887776543 34788888887
Q ss_pred HHHHHHHH
Q 038837 162 LHMAELRA 169 (287)
Q Consensus 162 lk~ae~~~ 169 (287)
++-.-..+
T Consensus 326 l~~~~~~l 333 (629)
T KOG0963|consen 326 LKAKISEL 333 (629)
T ss_pred HHHHHHHH
Confidence 76554443
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.59 E-value=1.3 Score=38.30 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhcc--chhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038837 78 IHHLQSLLSKIKDD--SSRAEERLNALEEEIRLLWAASRKNNF 118 (287)
Q Consensus 78 I~sLqsEi~sLkk~--s~~aee~i~eLEkQVe~L~~elekqn~ 118 (287)
+.+|.+|+.+|... ..+...+|.+|++++..|...++....
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444221 223334455555555555554444443
No 84
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.56 E-value=3.1 Score=40.59 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC--chhhHHH--HhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNG--KSNYIEE--RDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~--Kd~~l~e--~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
.+|.+|+.++...+....+....+.+ ....+.. ....|.....++..++.++..+...-.+.--.+..+..|++.|
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSL 294 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 45555555555555444433322221 1111111 2345566667777777777766322222222234444444444
Q ss_pred HHHHhhhhhh-hhhHHhhhHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFD-IHNLESKALDAEDRLEEVSLQVEKMSEI---VTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 110 ~~elekqn~~-~~~LEsrA~dAEkkv~eL~sklek~~ki---~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
++.+.+.-.+ ...+++....+..++.+|...++...+- ...+-.+...++|-+..++.-
T Consensus 295 ~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~ 357 (444)
T TIGR03017 295 KSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRA 357 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322111 1112222233444444444444432221 222234455666666655544
No 85
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=92.56 E-value=2.9 Score=35.71 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 7 LTLLLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
|+.|+++.|.+|..|. ...+.+++++|......|+..=+.+-.+.+...+..+..=....++-..|......+
T Consensus 6 l~~~lllss~sfaA~~------~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl 78 (126)
T PF09403_consen 6 LLGMLLLSSISFAATA------TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKL 78 (126)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456677777777665 345567888888888888776666655555544444333323333333333333333
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.53 E-value=3.3 Score=47.77 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEI 106 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQV 106 (287)
-+..|+.+|.+++..-..+...+.+..++++.....+.....-++++......++.++..| -..-..+|+++..-.
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~--- 1062 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--- 1062 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH---
Confidence 3467888888888888888888888888888888888888888889999999999999999 555666777765543
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH----------HHHHHHH------HHHHHHHHHHHHH
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE----------QWIQIQH------LEQALHMAELRAA 170 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E----------Q~~qIqk------~E~Alk~ae~~~~ 170 (287)
+.|...|+..+.....||-.-.-.+..++.|+.++++.++--.+ +|--+.+ .|+.|...+..-+
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~~ 1142 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYL 1142 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhcc
Confidence 67788888888888888888777888888887777776665443 3433332 3666665555544
Q ss_pred HH
Q 038837 171 NV 172 (287)
Q Consensus 171 k~ 172 (287)
++
T Consensus 1143 ~~ 1144 (1486)
T PRK04863 1143 SA 1144 (1486)
T ss_pred Cc
Confidence 44
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=11 Score=36.13 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
++..+...+-.+|.+|-.+|++...+.++.+..+.+.+..|.....+|..+.+-|
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555444444444444444444444
No 88
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=92.32 E-value=8.1 Score=37.03 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=28.8
Q ss_pred cCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHH
Q 038837 58 NGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 58 ~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~ 111 (287)
+.|++.|.+||..-++|. -.||++... .....+++.++.-|--++..|.+
T Consensus 16 ~~~~~l~~eCEe~wk~me----~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~a 66 (268)
T PF11802_consen 16 DAKEELIKECEELWKDME----ECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTA 66 (268)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHH
Confidence 346677888887776665 378888555 44455555553333333333333
No 89
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.23 E-value=0.31 Score=47.88 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
|.+|..++|.++.++...++.+.....+...+|..+++-+.-
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544445555555554443
No 90
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.17 E-value=4.3 Score=39.31 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=45.7
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhH-----------HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRA-----------EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~a-----------ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
..++.+...+-+.|+.|+..|+...... .+++.++..++....++++..+.+...++++.++...+..+
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e 250 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE 250 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666667777777775443331 13355555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhhh
Q 038837 137 VSLQVEKMSEIV 148 (287)
Q Consensus 137 L~sklek~~ki~ 148 (287)
+...+..++++.
T Consensus 251 ~~~~I~~ae~~~ 262 (312)
T smart00787 251 LNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 91
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.06 E-value=7.2 Score=35.34 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=73.8
Q ss_pred hhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHH
Q 038837 56 KVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLE 135 (287)
Q Consensus 56 el~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~ 135 (287)
-|.||.-.++++|..++|-..-+..-.+.+.+-....-.+..-...-+.++..|+.-+..-..+..+.+..+..+-..+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999988885555444443333334455557888999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 038837 136 EVSLQVEKMSEIVTEQWIQI 155 (287)
Q Consensus 136 eL~sklek~~ki~~EQ~~qI 155 (287)
+-+.=|+...+-+++-.+++
T Consensus 141 eK~qLLeaAk~Rve~L~~QL 160 (188)
T PF05335_consen 141 EKTQLLEAAKRRVEELQRQL 160 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 87777777654444443333
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.06 E-value=9.6 Score=42.86 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHH-------HhhhHHHHHHHHhhh
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDD-------MTNKIHHLQSLLSKI 88 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~e-------ks~kI~sLqsEi~sL 88 (287)
....+|+.+++++...|..++...++..+.|+.....+.+....+.. ...++..|.++..++
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 668 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQL 668 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44567888887777777766655555555554444444444443333 344444455554444
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.96 E-value=5 Score=39.95 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhHHhhhHhHHHHHHHHH
Q 038837 73 DMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD--------------IHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 73 eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~--------------~~~LEsrA~dAEkkv~eL~ 138 (287)
....+|..++.++..+...-.+.--++..+..|++.|++.+.+.-.. ...|.....+++..+..+.
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 330 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLE 330 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777776663332333344677777777777666543211 2234444555555555555
Q ss_pred HHHHHHhhhhHH
Q 038837 139 LQVEKMSEIVTE 150 (287)
Q Consensus 139 sklek~~ki~~E 150 (287)
.+++.+.+...+
T Consensus 331 ~~~~~l~~~~~~ 342 (498)
T TIGR03007 331 ARVAELTARIER 342 (498)
T ss_pred HHHHHHHHHHHH
Confidence 555554444333
No 94
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.88 E-value=5.3 Score=33.41 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQ 140 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sk 140 (287)
+.+|+.+|.-+-+.++...--+.-|++|...+++.-..+-.+
T Consensus 60 ~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~ 101 (107)
T PF09304_consen 60 IAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444444444444444442222223444444444444433333
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.66 E-value=7.2 Score=32.72 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH-hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER-DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~-Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
.|..++..++..+...++.+.....+++.-.....+. +++-+|+-.- +....++..++........++..|..+++..
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H-a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH-AEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444444 3333333322 1123333333444444445555555555555
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
+..+.... .+|+.+-...++.+.++..+++.+..
T Consensus 86 ~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 86 KAELEESE---ASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554322 13333344444444444444444433
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.66 E-value=6.1 Score=37.93 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=12.2
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
....+..+....-+.|+.++.+|
T Consensus 174 ~l~~~~~~l~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 174 QLDELLPKLRERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666666
No 97
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.51 E-value=5.8 Score=44.17 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 47 ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 47 ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
|+.+.+.+++++.....+++-.+....+...-..|+-|.+-+.+.-...+.+...++++++.|..++..+.-+....|.-
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 34445555555555555555555555555566667777777755555566667777777777777766666655555433
Q ss_pred hHhH
Q 038837 127 ALDA 130 (287)
Q Consensus 127 A~dA 130 (287)
...+
T Consensus 866 ~~~~ 869 (1174)
T KOG0933|consen 866 VKKA 869 (1174)
T ss_pred HHHH
Confidence 3333
No 98
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=91.46 E-value=4.8 Score=38.50 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhccccC-cccch------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHH
Q 038837 8 TLLLVILFWSFTLTSQN-QQHSQ------QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHH 80 (287)
Q Consensus 8 ~~~~~~~~~~~~~~s~~-~~~~~------~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~s 80 (287)
.++=+||+.+-+|-+.+ ..-+. .+...+|.-.+.++.=|.+.+++.....+-. +.-+..+...+.+..+|..
T Consensus 126 ~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~-~~~~~~e~eke~~~r~l~~ 204 (269)
T PF05278_consen 126 YYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIY-DQHETREEEKEEKDRKLEL 204 (269)
T ss_pred HHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557888888884332 22222 3444566667778888888888865432222 2223334444555566666
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 81 LQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 81 LqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
...|++.+ .+...+.|++|..++.-+.....+...||.+-....+.+..+.+||++..+
T Consensus 205 ~~~ELe~~-------~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 205 KKEELEEL-------EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666544 455677777777777777777777888888888888888888888887654
No 99
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.32 E-value=3.4 Score=39.95 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
+...++.++.++..+....-....+.+..+++++.+++....--.+...+|+++|+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444445555555555555555554444444555555554
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=13 Score=39.89 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHH-------HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHH
Q 038837 99 LNALEEEIRLLW-------AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLE-------QALHM 164 (287)
Q Consensus 99 i~eLEkQVe~L~-------~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E-------~Alk~ 164 (287)
|+.||+|...|. +++..-...++..-..+.++.++++.|-.++++.++.-++=..++++++ .-++-
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666555 5555555555555667778888888888777777766665555555444 44456
Q ss_pred HHHHHHHHHhhhh
Q 038837 165 AELRAANVQRQLM 177 (287)
Q Consensus 165 ae~~~~k~q~ea~ 177 (287)
+++++.+.++...
T Consensus 606 leEE~e~L~~kle 618 (698)
T KOG0978|consen 606 LEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777766655
No 101
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.28 E-value=8.7 Score=34.35 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 65 EERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 65 ~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.-++..|+++...|..+...+...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444433
No 102
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.26 E-value=8.5 Score=42.94 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH-------HHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER-------LNAL 102 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~-------i~eL 102 (287)
..+-.||+.||..+.+-.. ++=-.-+++.|. +.|....++..+|..|..+++++.+.-.+..++ -..|
T Consensus 407 Kd~~~EIerLK~dl~AaRe----KnGvyisee~y~-~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l 481 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAARE----KNGVYISEERYT-QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELL 481 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHh----hCceEechHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455677777777766521 111111222222 334444555555555555555553333333333 3578
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAA 170 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~ 170 (287)
-++.++|+..++..+.+..+++..-.++...+.+-.--+.++.+.-..--.+--++-+.+..+.+.+.
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887776666666554333332322222222111223344455555555544
No 103
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=91.25 E-value=0.28 Score=47.88 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH-------HH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER-------LN 100 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~-------i~ 100 (287)
....|...+..+-.+|+.|++.|+..+-.+..=...|..+..-|..+...|.+|.+.++++.....+-+.. +.
T Consensus 43 sv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~ 122 (326)
T PF04582_consen 43 SVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVS 122 (326)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhh
Confidence 34556666777888888888888887777777777777777777777777777777777764444444433 45
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKAL 128 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~ 128 (287)
.|+-.|-.|+.++-.+--.+..||.|.+
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 5555555555555554444444443333
No 104
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.24 E-value=8.4 Score=39.92 Aligned_cols=135 Identities=20% Similarity=0.276 Sum_probs=70.4
Q ss_pred ccCcccchHHHHHHH----HHHHHHHHHHHHHHHH---HhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh------
Q 038837 22 SQNQQHSQQHLIAEL----QDAKLKIAGLETMLEE---SIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI------ 88 (287)
Q Consensus 22 s~~~~~~~~~l~~eL----~qLk~kIa~LES~i~e---~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL------ 88 (287)
+.+-+++.++|+.-. .-+.-.|++|.+..++ ..++...=+..|+.++.--+++..+-.-+++-...+
T Consensus 248 ~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 248 EDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 445556666655433 2244445555443322 223333334444444444444444444444444433
Q ss_pred --------hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHH---HHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 89 --------KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAE---DRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 89 --------kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAE---kkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
+..-...|++|..|..+.+.|.+-+++|.-..+-.|-.-.+-| +-++..+.+.+++-|.+-+++.-+|
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 1111235677888999999999999988877776665444433 2334444455555555555554443
No 105
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.24 E-value=7.7 Score=35.17 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=58.6
Q ss_pred hhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH-------HHH
Q 038837 61 SNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDA-------EDR 133 (287)
Q Consensus 61 d~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dA-------Ekk 133 (287)
.+...-++..|+|+...|......+....-..--.+.++.+++..++.+.+--+.=-..+. |+.|..| +..
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~--EdLAr~Al~~k~~~~~~ 100 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR--EDLARAALIEKQKAQEL 100 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 3555666777777777776666666555333333444455555555555432222111111 2334444 666
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038837 134 LEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAEL 167 (287)
Q Consensus 134 v~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~ 167 (287)
+..|...++.+...+.+-+.+++.+++-+..++.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777777777766555443
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.19 E-value=2.9 Score=40.31 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
...+..++.++..++.......+.+.+||++-+.|.+++++...+...+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544433333444444555555555555554444443333
No 107
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.14 E-value=12 Score=34.37 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
+-.+..-+..++..+..-|..+.+..+....+.....++.++|.+-+..|+.+..+
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e 59 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE 59 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777666666666666666666677777777777777777777766
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.11 E-value=8.9 Score=36.82 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 038837 76 NKIHHLQS 83 (287)
Q Consensus 76 ~kI~sLqs 83 (287)
..|..|++
T Consensus 191 ~e~~~Lk~ 198 (325)
T PF08317_consen 191 EELENLKQ 198 (325)
T ss_pred HHHHHHHH
Confidence 33333333
No 109
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.10 E-value=1.5 Score=42.30 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.3
Q ss_pred hhhhhhHHHHHHH
Q 038837 254 ALANEELVFFVAS 266 (287)
Q Consensus 254 ~lAtkeLvWflAs 266 (287)
++.+.+ -|=.|.
T Consensus 283 ~~~~~~-~WT~Al 294 (314)
T PF04111_consen 283 QFNSEE-EWTKAL 294 (314)
T ss_dssp TTS-HH-HHHHHH
T ss_pred cCCChh-HHHHHH
Confidence 556666 999888
No 110
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.00 E-value=9.1 Score=42.05 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=40.4
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhH
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYARCT 182 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~~~ 182 (287)
..|.....+-|..|.+++..|+.+..+.+ .--++.|+|-|+.+.+-||..++----+|-
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t---~a~gdseqatkylh~enmkltrqkadirc~ 338 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRT---RADGDSEQATKYLHLENMKLTRQKADIRCA 338 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777778888777777666543 234567888888888888877775544554
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.90 E-value=5.9 Score=41.79 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhh-c----cchhHH----HHHHHHHHHHHHH
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIK-D----DSSRAE----ERLNALEEEIRLL 109 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk-k----~s~~ae----e~i~eLEkQVe~L 109 (287)
|+...+.+...+.+.+.++..=.......-..|++.+.+|+.|.+.+.... . |-+..+ ..+..|.++++.|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443433333223333444557777788888888877551 1 122222 2267788888888
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
...+..+..+...|--.-.+-|.++.+|...|+..+.
T Consensus 100 ~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 100 EEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888766666633334555555555555544333
No 112
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.75 E-value=8.5 Score=42.31 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=45.2
Q ss_pred chhhHHHHhHHhHHHhhhHHHHHHHHhhh--hcc-----chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHH
Q 038837 60 KSNYIEERDKLVDDMTNKIHHLQSLLSKI--KDD-----SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAED 132 (287)
Q Consensus 60 Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~-----s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEk 132 (287)
........++..+.+-.++..|..+-.-| |-+ ...++.-+.+++++...|-.-+++.....+.+|.+.++-.+
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~ 494 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAK 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444555555555666665555444 211 11122224455555556666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 038837 133 RLEEVSLQVEK 143 (287)
Q Consensus 133 kv~eL~sklek 143 (287)
.++.+-.++..
T Consensus 495 ~le~l~~El~~ 505 (980)
T KOG0980|consen 495 ALESLRQELAL 505 (980)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 113
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.58 E-value=1.8 Score=38.79 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=15.6
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
....++.+..|..++++..+..++ +|+++.+..+.+
T Consensus 112 l~~l~~~~~~l~~el~~~~~~Dp~---~i~~~~~~~~~~ 147 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSENDPE---KIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHH
Confidence 334444444444445544444443 334444444433
No 114
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.55 E-value=1.5 Score=33.89 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.8
Q ss_pred hHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 63 YIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 63 ~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
.+.++|..|...-..|+.|+-|++-|+..+....+...+|..+.++|+.+-.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777888888888887755444444556666666666664433
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.54 E-value=9 Score=32.16 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=37.8
Q ss_pred HhhhHHHHHHHHhhhhccchhHHHHH-HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHH
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAEERL-NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~aee~i-~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~ 152 (287)
...++..++.++.+..+-.-.++.+. .||-+.-+- -..|.+.+.+...+..........++.....|+..+..+.+|+
T Consensus 22 ~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 22 AEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33455556666555544444455442 233222222 2223333333334444444444555555555566666666666
Q ss_pred HHHH
Q 038837 153 IQIQ 156 (287)
Q Consensus 153 ~qIq 156 (287)
..++
T Consensus 101 ~~le 104 (132)
T PF07926_consen 101 EQLE 104 (132)
T ss_pred HHHH
Confidence 4443
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.46 E-value=3.3 Score=41.22 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 256 ANEELVFFVASALITFPILAAWVLL 280 (287)
Q Consensus 256 AtkeLvWflAsALlalP~~~~~~ll 280 (287)
.-..+++|++|+-+++.+|.+.++.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
T TIGR03007 472 RRRRLAAFLASAGLLIAVYGALMAM 496 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788889999999999887653
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.25 E-value=4.3 Score=36.44 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=32.4
Q ss_pred hhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH------HHHHHHHHHHHHHHHh
Q 038837 55 RKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER------LNALEEEIRLLWAASR 114 (287)
Q Consensus 55 qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~------i~eLEkQVe~L~~ele 114 (287)
++...+...+.++.+.+.+...+|..|+.+++..+.|..+.+++ +.+|++++..|++++.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666665554444333 3555555555555554
No 118
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.16 E-value=15 Score=33.63 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hcc-chhHHHH-------
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDD-SSRAEER------- 98 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~-s~~aee~------- 98 (287)
+-..|...|.+..+.+..++..+.+.+..+.+=....+..-..+-+....+..+.+.+.++ ..| +.-.+.+
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 3467778888888888888888887777777666777777777777778888888887777 333 3334444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
...|+-+++-|..++--++...+-+..+-..+.++++.+...+..++.....+ +-...|+++.-++..
T Consensus 159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~--R~~eae~~~~~a~~~ 226 (240)
T PF12795_consen 159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK--RRQEAEQAVEEAEQL 226 (240)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777888888888888888887776653 345677777665554
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.11 E-value=6.1 Score=41.25 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAA 112 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~e 112 (287)
..++..|+-.+..|...+++ +.........-+.+-..-+.+++.|+.-+|..--+.++.+..|-+|..+|+.+
T Consensus 112 e~ei~kl~~e~~elr~~~~~-------~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEK-------AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444444444444444444 33344444444555556677777777766666666777788888888888888
Q ss_pred HhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHH
Q 038837 113 SRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE-----IVTEQWIQIQHL 158 (287)
Q Consensus 113 lekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k-----i~~EQ~~qIqk~ 158 (287)
|.......+.==..=.|.+.++++|--+|+-+.- |.+++.+.-+++
T Consensus 185 l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 185 LARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 8777776554434457888899999998887763 344444444433
No 120
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.11 E-value=5.3 Score=41.35 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKN 116 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekq 116 (287)
++|++.+...=-.|-.-+..+++-.+.|.+.=+...+++.+|..|.-.--.|+.++.--+.-+..|+-.-+.--+-+++.
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl 335 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKL 335 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45666666666666666666666677777776777777777777777766666665555555555555544444444455
Q ss_pred hhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHH
Q 038837 117 NFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQ 151 (287)
Q Consensus 117 n~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ 151 (287)
..+++..|........+..+|+-.|++ ++|++||
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~~k-q~Is~e~ 369 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQLRK-QGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCHHH
Confidence 555444444444445555566666554 4444444
No 121
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.11 E-value=1.4 Score=33.49 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=38.2
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q 173 (287)
+|+|..+.|-|+.-..--++.+.+++.+|+.+|..+++.++.-..++-...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777777778888888999999999999999887666655544
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=2.9 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=12.1
Q ss_pred HHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 65 EERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 65 ~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+.++..+.++...|.-|.++++++
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 439 SELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555
No 123
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.89 E-value=13 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchh
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSN 62 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~ 62 (287)
.+.+++.+|++...|...+......|+.|++
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766666655555554
No 124
>PRK11281 hypothetical protein; Provisional
Probab=89.89 E-value=13 Score=41.84 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=83.0
Q ss_pred ccchHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccc---
Q 038837 26 QHSQQHLIAELQDAKLK----------IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDS--- 92 (287)
Q Consensus 26 ~~~~~~l~~eL~qLk~k----------Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s--- 92 (287)
-++...++++|++++.. +..||.-++-..+-. .-....+++++.+.+-..++...+.+++.+|+..
T Consensus 35 ~p~~~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~-~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~ 113 (1113)
T PRK11281 35 LPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKID-RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113 (1113)
T ss_pred CCCHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 36666688999887642 333444333322222 2223445567777777777888888888775421
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh-------hHhHHHHHHHHHHHHHHHhh----hhHHH
Q 038837 93 ----------SRAEERLNALEEEIRLLWAASRKNNFDIHNLESK-------ALDAEDRLEEVSLQVEKMSE----IVTEQ 151 (287)
Q Consensus 93 ----------~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsr-------A~dAEkkv~eL~sklek~~k----i~~EQ 151 (287)
..-|.++.+++.+.+..++++-.-|+...+++++ ..++-.++++.+..+..... .++.|
T Consensus 114 ~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~ 193 (1113)
T PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQ 193 (1113)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 1122334556666666666666666666665553 34444555555554433111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 038837 152 WIQIQHLEQALHMAELRAANVQRQLMYAR 180 (287)
Q Consensus 152 ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~ 180 (287)
+.--++|+++--++..+.+-.....+.+
T Consensus 194 -~~~l~ae~~~l~~~~~~~~~~l~~~~~l 221 (1113)
T PRK11281 194 -RVLLQAEQALLNAQNDLQRKSLEGNTQL 221 (1113)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 2223567777777666666655555544
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.85 E-value=21 Score=34.89 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCch----------------------------hhHHHHhHHhHHHh
Q 038837 24 NQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKS----------------------------NYIEERDKLVDDMT 75 (287)
Q Consensus 24 ~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd----------------------------~~l~e~Ek~i~eks 75 (287)
+.+.++..+..+|...+..|.+|.-.+.-+..-|+.-. ..+..+.+-++..+
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LE 173 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLE 173 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHH
Confidence 34455566666777777777777655555443322111 12333444444444
Q ss_pred hhHHHHHHHHhhhhccchh------------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 76 NKIHHLQSLLSKIKDDSSR------------------AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~------------------aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
..-..|.+|.+.|+..... |..+|..|.+++-+-..+...|..++..|-++.-|.++|+..+
T Consensus 174 eEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 174 EENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555433222 3344788888888888999999999999999999999999999
Q ss_pred HHHHHHHhhhhHH
Q 038837 138 SLQVEKMSEIVTE 150 (287)
Q Consensus 138 ~sklek~~ki~~E 150 (287)
+.+-|.+......
T Consensus 254 ~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 254 AAENEELQQHLQA 266 (306)
T ss_pred hhhHHHHHHHHHH
Confidence 9988887766443
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.82 E-value=14 Score=33.96 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 038837 132 DRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 132 kkv~eL~sklek~~ki~~E 150 (287)
+|++.|..-+++-.-...|
T Consensus 131 ~Rl~~L~~~l~~~dv~~~e 149 (251)
T PF11932_consen 131 ERLARLRAMLDDADVSLAE 149 (251)
T ss_pred HHHHHHHHhhhccCCCHHH
Confidence 4444444444443333333
No 127
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.76 E-value=15 Score=37.96 Aligned_cols=130 Identities=19% Similarity=0.296 Sum_probs=72.9
Q ss_pred HHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccc
Q 038837 13 ILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDS 92 (287)
Q Consensus 13 ~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s 92 (287)
-++-+|+++-.+-... ..+..++.++..+...+...+++....-..=.+.+++..+.+.+.+.....+...+.+|-++.
T Consensus 331 ~v~~sY~L~~~e~~~~-~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 331 RVSQSYTLNHNELEIV-RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred HHHHhcCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543222111 223344444444444444444443333333333444444555555555555555666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHhhhHhHHHHHHHHHHHHHH
Q 038837 93 SRAEERLNALEEEIRLLWAASRKNNFDI--HNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 93 ~~aee~i~eLEkQVe~L~~elekqn~~~--~~LEsrA~dAEkkv~eL~sklek 143 (287)
..|.+++..+...+...++-+++.|==+ +.+...-.++.++++.|...|++
T Consensus 410 ~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 410 KEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777778888888888888888877411 35556677777777777777765
No 128
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.61 E-value=8.1 Score=43.11 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.+.+|.-+|..++.||-.|+-.++| |.+.+.+++..+.++...|..|+.|+...
T Consensus 171 ~~~hL~velAdle~kir~LrqElEE-------K~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEE-------KFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999888888 55999999999999999999999988755
No 129
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.58 E-value=17 Score=33.57 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
+-+...++..++-.+|.++.+-. -.-+....--.+-..+.+-..+++++.-.+.-.++.++.+|+.+...+..
T Consensus 51 ~enr~~kdEE~~e~~e~qLkEAk-------~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~ 123 (205)
T KOG1003|consen 51 IENRAQKLEEKMEAQEAQLKEAK-------HIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDS 123 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33445555556666666555532 11111133333344455555566665544455556666777777777665
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
.+.-....-+.++-+-..-+..+..++.||.
T Consensus 124 nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 124 NLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5554444444444444444455555555543
No 130
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.58 E-value=18 Score=33.75 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
+..+|..++.++|.......++|....+.+..++ .+...++.+-. -.+.+..+++...+.|.....
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Le-------ek~k~aeeea~-------~Le~k~~eaee~~~rL~~~~~ 71 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELE-------EKLKQAEEEAE-------ELEQKRQEAEEEKQRLEEEAE 71 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777766655544444444443 23223333322 234456888899999999999
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
++..++..|+.+..+++..+..|....+.-..-...-..++.....++.-|.+++..+-.-
T Consensus 72 ~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~ 132 (246)
T PF00769_consen 72 MQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSA 132 (246)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988888887776666665566666777777666666544333
No 131
>PRK00736 hypothetical protein; Provisional
Probab=89.54 E-value=1.9 Score=32.83 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=38.5
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAA 170 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~ 170 (287)
++|+|..+.|-|+.-..--++.+.+++.+|+++|..+.+.++.--.++.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777888888999999999999988876655543
No 132
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.50 E-value=21 Score=40.95 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLET 48 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES 48 (287)
.++..|+.++.++..|+.
T Consensus 234 ~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 234 EYRDELERLEALERALRN 251 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 133
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.49 E-value=17 Score=33.41 Aligned_cols=113 Identities=18% Similarity=0.280 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHH-HHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERL-NALEEEIRLLWA 111 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i-~eLEkQVe~L~~ 111 (287)
++-|..+..++..+++.++.-. ..--...+..+......|..|...|..=.+.-..+.+++ ...+.++..+..
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~------~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~ 77 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEK------RQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQE 77 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888876532 122233355666666677777777665533333333332 455555655555
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQH 157 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk 157 (287)
.++.+-.. +.......+..|+.++..+++...+.+.++..
T Consensus 78 ~v~~~~~~------~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~ 117 (247)
T PF06705_consen 78 RVENQISE------KQEQLQSRLDSLNDRIEALEEEIQEEKEERPQ 117 (247)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55443322 33344455566666666666655555544443
No 134
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.42 E-value=16 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~ 53 (287)
..+..++..++.++++|+..++..
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888999999888777653
No 135
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=89.39 E-value=1.6 Score=34.15 Aligned_cols=43 Identities=30% Similarity=0.333 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
+.++=+.+|+++++.+..++.+.+.....++.+.++.++++.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999998888888887777777766543
No 136
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.36 E-value=9.7 Score=40.17 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e 52 (287)
..+.++.+.+.+...+++.+..
T Consensus 248 ~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 248 RARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555543
No 137
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=89.34 E-value=14 Score=32.10 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 128 LDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 128 ~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
..-|.++-.--+.+.-++.+...|..+|++||++..+
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888999999999999999997764
No 138
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.14 E-value=19 Score=33.45 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=56.1
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH----HHhhhh--------hhhhhHHhhhHh
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA----ASRKNN--------FDIHNLESKALD 129 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~----elekqn--------~~~~~LEsrA~d 129 (287)
+...-++..|+++...+.-+...+..+...-.-.+.++..+..+++++.. .+.+-| .++.+||..+..
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44466677788888777777777665533333344445555555544442 122222 234455555555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 130 AEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 130 AEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
-+.-+..+...+++|.+-...-..+|.+++.-..
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555555555554333
No 139
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.11 E-value=8.5 Score=40.38 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=40.5
Q ss_pred hhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc------chh-HHHH---HHHHHHHHHHHHHHHhhhhhhhhhHHh----h
Q 038837 61 SNYIEERDKLVDDMTNKIHHLQSLLSKIKDD------SSR-AEER---LNALEEEIRLLWAASRKNNFDIHNLES----K 126 (287)
Q Consensus 61 d~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~------s~~-aee~---i~eLEkQVe~L~~elekqn~~~~~LEs----r 126 (287)
+..++++...|.+++..|..|+.+.+.||+. |+. .+.. -.+|...|..++.+++.-.++...++. .
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555666666667777777777766332 222 2221 234444444444444444444333332 3
Q ss_pred hHhHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 127 A~dAEkkv~eL~sklek 143 (287)
...-|+++.++++-.-+
T Consensus 373 f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 373 FKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554433
No 140
>PRK02119 hypothetical protein; Provisional
Probab=89.11 E-value=2.6 Score=32.58 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=41.5
Q ss_pred hhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 120 IHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAAN 171 (287)
Q Consensus 120 ~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k 171 (287)
...+|+|..+.|-|+.-..--++.+.+++.+|+++|..+.+.++.--.++..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788888888888888888888999999999999999888766555433
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.02 E-value=9.7 Score=37.93 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038837 154 QIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 154 qIqk~E~Alk~ae~~~~k~q~ 174 (287)
++..++..+..++..+..++.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 142
>PRK10698 phage shock protein PspA; Provisional
Probab=89.02 E-value=15 Score=33.79 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred chhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHh-------HHH
Q 038837 60 KSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALD-------AED 132 (287)
Q Consensus 60 Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~d-------AEk 132 (287)
-.+..+-++..|++|...+..+...+....-..--.+.++.+++.+++....--+.=-..+. |+.|.. .+.
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~--EdLAr~AL~~K~~~~~ 99 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEK--EDLARAALIEKQKLTD 99 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 44566677777788777777776665544322333444455555555554422221111111 233444 566
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038837 133 RLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAEL 167 (287)
Q Consensus 133 kv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~ 167 (287)
++..|...++......+.-..++++++.-+.-++.
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777767777777665554443
No 143
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.98 E-value=19 Score=35.18 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
....-|..++.+++.++...|..+..-.
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999988887633
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.90 E-value=5 Score=36.69 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 038837 39 AKLKIAGLETMLEESI 54 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~ 54 (287)
++.++..||.++++.+
T Consensus 91 ~~~rlp~le~el~~l~ 106 (206)
T PRK10884 91 LRTRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 145
>PRK00295 hypothetical protein; Provisional
Probab=88.85 E-value=2.3 Score=32.39 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=39.1
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANV 172 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~ 172 (287)
++|+|..+.|-|+.-..--++.+.+++.+|+++|..+++.++.-..++...
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777777777777788888899999999999998887665554443
No 146
>PRK04406 hypothetical protein; Provisional
Probab=88.80 E-value=2.6 Score=32.84 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=39.7
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
..+|+|..+.|-|+.-..--++.+.+++.+|+++|..+.+.++.--.++
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888888888999999999999998887655544
No 147
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.72 E-value=11 Score=33.13 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=16.1
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+.|+........++.|.+|+.++
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~ 70 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNS 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777788887665
No 148
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.71 E-value=51 Score=37.93 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYA 179 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~ 179 (287)
.+-++-++.--.+++.-...++.++.+..-||+.+..-+..+.++++..++-|.++.+--..-+.|+...--|+.+|.-+
T Consensus 1580 ~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a 1659 (1758)
T KOG0994|consen 1580 GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSA 1659 (1758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777777778888888888999999999999999999999999998877666666666666666666655
Q ss_pred hh
Q 038837 180 RC 181 (287)
Q Consensus 180 ~~ 181 (287)
..
T Consensus 1660 ~q 1661 (1758)
T KOG0994|consen 1660 EQ 1661 (1758)
T ss_pred HH
Confidence 43
No 149
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=88.62 E-value=11 Score=30.33 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
+.|+.+++.+..++..|++.+.|.. ..+.+++.+= -...|--+.+++-- ..+.++=+..|++.++.+
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~-------~v~~EL~~l~--~d~~vy~~VG~vfv----~~~~~ea~~~Le~~~e~l 75 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENK-------KALEELEKLA--DDAEVYKLVGNVLV----KQEKEEARTELKERLETI 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCC--CcchHHHHhhhHHh----hccHHHHHHHHHHHHHHH
Confidence 4466677777777777777777743 3333333211 11122222222100 112333356777777777
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
..++.+.+.+.+.++....+.+.++.+
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766555555555544444
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.49 E-value=1.8 Score=33.41 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=46.5
Q ss_pred hhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 55 RKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 55 qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
+.|+.||+.|.++-..-+..|.+...+.+.|-.|.....+.++++.+|-+.++.+..++...+..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555888888887777777788777888877776667777777777777777766666655443
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.37 E-value=21 Score=38.35 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER 98 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~ 98 (287)
|--+.+.-..||..||--|++....|+++++.|.+.=-.+.+.+.+--.|..|+++||-.-...|+.
T Consensus 130 LteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 3344555678899999999999999999999998876666777777778999999997665555533
No 152
>PRK00846 hypothetical protein; Provisional
Probab=88.27 E-value=3.1 Score=32.81 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=40.3
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q 173 (287)
+.+|+|..+.|-|+.-..--++.+.+++..||.+|..+.+.++.--+++-.++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777788888899999999999998887666655444
No 153
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=88.08 E-value=1.6 Score=42.95 Aligned_cols=88 Identities=20% Similarity=0.373 Sum_probs=37.6
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
+.++...+..|..|++++++.-+.....+..+.+. +.......+...+.+|.|..++|++++++...+..+++-...
T Consensus 100 l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~---~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~ 176 (370)
T PF02994_consen 100 LNELKKRIKELKKEIENIKKNQSEMKLEIENLKKK---LENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKK 176 (370)
T ss_dssp ------------------H----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455555666777777755433333333333222 222223456778888888888888888888888888887777
Q ss_pred HHHHHHHHHHH
Q 038837 151 QWIQIQHLEQA 161 (287)
Q Consensus 151 Q~~qIqk~E~A 161 (287)
-+.+++++|..
T Consensus 177 l~~kl~DlEnr 187 (370)
T PF02994_consen 177 LEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 78888888883
No 154
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.07 E-value=4.4 Score=34.21 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAA 112 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~e 112 (287)
..|+..++..+++|+..=++.++|+-. +.......+.....+..|+.++..|...-...=+=++|=.++|+.|+.|
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~----l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVK----LMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344555555555555554444444322 1122223355566677777777666222222223356667777777777
Q ss_pred Hhhhh
Q 038837 113 SRKNN 117 (287)
Q Consensus 113 lekqn 117 (287)
+.+..
T Consensus 105 v~DlK 109 (120)
T PF12325_consen 105 VQDLK 109 (120)
T ss_pred HHHHH
Confidence 76553
No 155
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.93 E-value=11 Score=43.16 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 47 ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 47 ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
...+....+++......+.+.+..+.+.+..+..++.+++.|+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 282 SRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333333444455555555555555555566666655433
No 156
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.91 E-value=27 Score=39.96 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=44.7
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhcc-------chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH-------hhhHhHHHH
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDD-------SSRAEERLNALEEEIRLLWAASRKNNFDIHNLE-------SKALDAEDR 133 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~-------s~~aee~i~eLEkQVe~L~~elekqn~~~~~LE-------srA~dAEkk 133 (287)
+..|+.....|..-++-++.+... ...+-+++.+||.-|+.|+....++..+....| .+|.+||..
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~ 1662 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQG 1662 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555445444444222 223445688999999999988877776655544 345555666
Q ss_pred HHHHHHHHHHH
Q 038837 134 LEEVSLQVEKM 144 (287)
Q Consensus 134 v~eL~sklek~ 144 (287)
++.|..+.+.+
T Consensus 1663 ~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1663 LEILQKYYELV 1673 (1758)
T ss_pred HHHHHHHHHHH
Confidence 65555555443
No 157
>PRK04325 hypothetical protein; Provisional
Probab=87.89 E-value=3 Score=32.23 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=38.0
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
.+|+|..+.|-|+.-..--++.+.+++.+|+++|..+++.++.--.++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777778888999999999999998887654444
No 158
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.70 E-value=41 Score=35.59 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchh--hHH-------HHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSN--YIE-------ERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLN 100 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~--~l~-------e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~ 100 (287)
..+..+|..++.+..+.++..+.....+..-.. .+. ..+..|++...+...++.++..+...-.+.--++.
T Consensus 240 ~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~ 319 (754)
T TIGR01005 240 AELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVV 319 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Confidence 344455555555555666666655555443211 111 11245666666666666665555221111112245
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhHHhhhHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH
Q 038837 101 ALEEEIRLLWAASRKNNFD-IHNLESKALDAEDRLEEVSLQVEKMSEI---VTEQWIQIQHLEQALHMAEL 167 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~-~~~LEsrA~dAEkkv~eL~sklek~~ki---~~EQ~~qIqk~E~Alk~ae~ 167 (287)
+++.|++.|++.+.....+ ..+++.....+..+.+.|..++++++.- ...+-.+.+.++|-...++.
T Consensus 320 ~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~ 390 (754)
T TIGR01005 320 AAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQ 390 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHH
Confidence 5555555555444332221 2233344444444444454444444322 12223445555555544443
No 159
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.69 E-value=3.4 Score=31.78 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=41.8
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANV 172 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~ 172 (287)
.+|+|..+.|-|+.-..--++.+.+++.+|+++|..+.+.++.--.++..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888888888888889999999999999999999888765555443
No 160
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=87.64 E-value=19 Score=37.60 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHH-HHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIH-HLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~-sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
.++.|+-|+-.+|+.+.. |++|-.-++.-.-...++++..- .+ -|.--|...++..+.++++.+-+++
T Consensus 160 ~~EaL~ekLk~~~een~~----lr~k~~llk~Et~~~~~keq~~y~~~-------~KelrdtN~q~~s~~eel~~kt~el 228 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQ----LRSKAMLLKTETLTYEEKEQQLYGDC-------VKELRDTNTQARSGQEELQSKTKEL 228 (596)
T ss_pred HHHHHHhhcCChHHHHHH----HHHHHHHHHhhhcchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677776666655443 45555555555555555554422 11 2223345555666666666666666
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQW--------------IQIQHLEQALHMAELRAANVQRQLMY 178 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~--------------~qIqk~E~Alk~ae~~~~k~q~ea~p 178 (287)
-.+..+.-.|++..-|+.||+..+.-++|-+..+-..=+ .|--..++-+.-||+++-+++....|
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 666666666666666666666666655554433322111 22223456666677777666655555
No 161
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.62 E-value=16 Score=37.75 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=14.7
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki~~EQ~ 152 (287)
-.+.+....+...+|+++...+.|+-
T Consensus 124 ~~e~~~~~~~~~~~le~~a~lt~~ea 149 (514)
T TIGR03319 124 EEELEELIAEQREELERISGLTQEEA 149 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 34444555556666666666655544
No 162
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.54 E-value=22 Score=32.35 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038837 32 LIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
++..|..++.++..+-...+...
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~ 40 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELR 40 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666644444433
No 163
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.42 E-value=5.6 Score=35.97 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLE 135 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~ 135 (287)
+.+|+.+...+...-+....++..+++.++..+..+.
T Consensus 140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433333
No 164
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.35 E-value=35 Score=38.33 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV-------SLQVEKMSEIVTEQWIQIQHLEQALHMAELRAAN 171 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL-------~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k 171 (287)
..-|.++++.+.+++++.+.++..|++-.++.+.+++++ +.+++.++..--+-|+.=+++-..+-..+.++.+
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777888777777777777777666666655 5556667777777887777777777777777777
Q ss_pred HHhhhh
Q 038837 172 VQRQLM 177 (287)
Q Consensus 172 ~q~ea~ 177 (287)
++..-.
T Consensus 493 ~~~~L~ 498 (1200)
T KOG0964|consen 493 AEKNLR 498 (1200)
T ss_pred HHHHHH
Confidence 765443
No 165
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.29 E-value=23 Score=39.80 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNF 118 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~ 118 (287)
.+.++-.+-++..+.+-++..+ |+.+.+.+++.-..+..|++.++-+ .+|+..+.-|..++.+-++-...
T Consensus 468 ~~~q~ls~~~Q~~~et~el~~~---iknlnk~L~~r~~elsrl~a~~~el-------keQ~kt~~~qye~~~~k~eeLe~ 537 (1195)
T KOG4643|consen 468 ELDQLLSLQDQLEAETEELLNQ---IKNLNKSLNNRDLELSRLHALKNEL-------KEQYKTCDIQYELLSNKLEELEE 537 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555544 6677777777777777776665544 34455555555555555555555
Q ss_pred hhhhHHhhhHhHHHHHHHHHH---H-------HHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSL---Q-------VEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~s---k-------lek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
.+.++|.+-...=++|+-|.. + .+..+-++.||++-|-+++ |++.
T Consensus 538 ~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~-alrr 592 (1195)
T KOG4643|consen 538 LLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN-ALRR 592 (1195)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555555555555555443 1 1223334456666666665 4443
No 166
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.22 E-value=23 Score=40.32 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=14.9
Q ss_pred hcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 57 VNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 57 l~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.+..++.+++.+...+..+..+..++-+++.+
T Consensus 496 ~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 496 QKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555555444
No 167
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.16 E-value=19 Score=31.26 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQA 161 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~A 161 (287)
+..|+.+++.+-.++.....+..++=+.-.+..+.++....+|..++..+.+=...|+..|+.
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666666655555555555555544444444555555555555555554444444444443
No 168
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.10 E-value=5.6 Score=34.40 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC--chhhHHHHhHHhHHHhhhHHHHHHHHhhhh
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNG--KSNYIEERDKLVDDMTNKIHHLQSLLSKIK 89 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~--Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk 89 (287)
..++.+|+.++..|+..+.....+|++ +.-...++...|.+...+|..|++.+..|+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333332 223345556666666666666666666663
No 169
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.05 E-value=29 Score=37.75 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=12.9
Q ss_pred hhhcCchhhHHHHhHHhHHHhhhH
Q 038837 55 RKVNGKSNYIEERDKLVDDMTNKI 78 (287)
Q Consensus 55 qel~~Kd~~l~e~Ek~i~eks~kI 78 (287)
.+|..||+.|.++-..=...|+++
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~q 469 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQ 469 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 366667777766533333334443
No 170
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.02 E-value=6.5 Score=36.00 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=48.5
Q ss_pred cCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 58 NGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 58 ~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
.++..++.+++....+.++++.+|..-+++.|.|.-..|+...+|.+...-|+++++.++-+.
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el 139 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWEL 139 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888888888887888877788777777776655555443
No 171
>PF13166 AAA_13: AAA domain
Probab=86.97 E-value=40 Score=35.09 Aligned_cols=15 Identities=0% Similarity=0.093 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhc
Q 038837 235 HHELQGFIKQEMVKN 249 (287)
Q Consensus 235 H~qvQ~~I~~~L~~h 249 (287)
..-+.+.+|..|+.+
T Consensus 633 ~~~~~N~~RriLE~y 647 (712)
T PF13166_consen 633 AYNIPNVMRRILEAY 647 (712)
T ss_pred HHhhHHHhHHHHHHH
Confidence 455667777777776
No 172
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.83 E-value=16 Score=34.10 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
|..||.|+..||..-++..+++. .+++.++.|.|-...+..|..|
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~----~~e~ee~~L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVE----SLENEEKCLEEYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766666554442 2333444444444444444444
No 173
>PF13166 AAA_13: AAA domain
Probab=86.43 E-value=11 Score=39.14 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNG 59 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~ 59 (287)
...+...++.++..+..+...|+.+......
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~ 354 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSS 354 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5667778888888888887777776655544
No 174
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=86.41 E-value=17 Score=29.76 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQA 161 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~A 161 (287)
.......-+..|...+..+......++.....+...+.+-+.+++.+++.-+-+...-+..+..
T Consensus 62 ~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~~~~~~~r 125 (141)
T TIGR02473 62 ELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAK 125 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777788888888888888888888888999999999888877666555544443
No 175
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.18 E-value=17 Score=40.63 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCch----hhHHHHh---HHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKS----NYIEERD---KLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALE 103 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd----~~l~e~E---k~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLE 103 (287)
+....|+++..+|..++++|.+.+.-+-.=. .--++++ ..++.+...+.+++.|+ ..+..++.+.|
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~-------~~~~~~l~~~e 517 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEEL-------QQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4446678888888888888877664443211 1112222 22222222222223332 22222333333
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
.=|+.+..--.+.......|..-...+-+.+..|..++....+.+++....|.++
T Consensus 518 ~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~ 572 (1041)
T KOG0243|consen 518 EIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDF 572 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHH
Confidence 2232222211111122334445566777777788888877777777666666554
No 176
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.16 E-value=28 Score=32.18 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 65 EERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 65 ~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
..++..|+.....|..+...+.++ ..+...+.+.+..+-++++.+=+++|+-++.
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~ 145 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFT 145 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccch
Confidence 334555555666666666666666 3344445555555556666666666555544
No 177
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.08 E-value=28 Score=35.84 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=72.4
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
..+.+....+++....+..+..++.....+-..+.+.+.+++.....+.+-.+|-......+-.+..+.+++++.+..--
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~ 345 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD 345 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH
Confidence 34444444455555555555555555433334445667888888888888888877777766666666666666544322
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh-HHHHHHHH
Q 038837 142 EKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYARC-TFLKFVKD 189 (287)
Q Consensus 142 ek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~~-~f~k~~~~ 189 (287)
+ ...+-..++.+++..+...-..+++....+.|..+ .+..++++
T Consensus 346 ~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 346 E----SLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 23334455666666666666666666666666443 23444444
No 178
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.91 E-value=4.9 Score=31.95 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=42.7
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKAL 128 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~ 128 (287)
+.+.++|.-|+..-+.|+.|+=||+-||..+....+.+..+-..-+.|..+-.+...+-++++.|.+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889899999999999999999996554444444433333333344444444455556665543
No 179
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.73 E-value=26 Score=31.33 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhh-hhccchh----HHHHHHHH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSK-IKDDSSR----AEERLNAL 102 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~s-Lkk~s~~----aee~i~eL 102 (287)
|+--|...|.++...|..++..+.... ..-..+++.+.+-...|..++..... |+.|.-+ +-.+...+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~-------a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~ 96 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVM-------ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADL 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335556666666666666666655544 33344455555555555555555442 3555322 22334556
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
+.++..|+..+..+......|.......+.|+.++.++.+.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555555555666666666555544
No 180
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.69 E-value=37 Score=33.06 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhh--------------hHhHHHHHHHHHHHHHHHhhhhHHH-------HHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESK--------------ALDAEDRLEEVSLQVEKMSEIVTEQ-------WIQIQH 157 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsr--------------A~dAEkkv~eL~sklek~~ki~~EQ-------~~qIqk 157 (287)
+.+|-.+++.|+...+..+.++..|-.. |.+.-++..++|.++.+..+-..+. ...|++
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666677777776666666666555332 3333444445555544444443333 345556
Q ss_pred HHHHHHHHH
Q 038837 158 LEQALHMAE 166 (287)
Q Consensus 158 ~E~Alk~ae 166 (287)
++..++--.
T Consensus 240 ~~k~ik~l~ 248 (294)
T COG1340 240 LEKKIKALR 248 (294)
T ss_pred HHHHHHHHH
Confidence 666555333
No 181
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.49 E-value=46 Score=37.41 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHH------HHHHHHhhh--hccchh---H
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIH------HLQSLLSKI--KDDSSR---A 95 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~------sLqsEi~sL--kk~s~~---a 95 (287)
-..++ .+|-.|+..-.+||...+..+ +.|..++..++....+.. -..+.|+.+ |+.-.. -
T Consensus 176 ll~~h--~eL~~lr~~e~~Le~~~~~~~-------~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~ 246 (1072)
T KOG0979|consen 176 LLQYH--IELMDLREDEKSLEDKLTTKT-------EKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKH 246 (1072)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhh
Confidence 44555 788888888888887777755 444444444444333332 245666666 222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.....+.-+.++++++++|+.+++...++++-.+.|+.+.++.++...+
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~ 295 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQK 295 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHH
Confidence 1224455555666666666666666555555555555555555544443
No 182
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.46 E-value=25 Score=36.88 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=32.1
Q ss_pred hhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038837 117 NFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAE 166 (287)
Q Consensus 117 n~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae 166 (287)
+.+...++.++++.|..+.-+..+.+.+++-..+-+..+-.+...|.-+.
T Consensus 140 re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 140 REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45555566677777777777777777777776666666655555554443
No 183
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=25 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
+=+.-|.++++.|.+.+++.+.++..|..++..-+..++.+..+.
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888888888888888777777777776666554
No 184
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.24 E-value=20 Score=39.31 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETML 50 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i 50 (287)
|..||.-|+-|+.+|+-.|
T Consensus 442 l~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3345555666666664443
No 185
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.17 E-value=0.27 Score=51.81 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred cchHHHHHHHH--HHHHHHHHHHHHHHHHhhhhcCc-----hhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHH
Q 038837 27 HSQQHLIAELQ--DAKLKIAGLETMLEESIRKVNGK-----SNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERL 99 (287)
Q Consensus 27 ~~~~~l~~eL~--qLk~kIa~LES~i~e~~qel~~K-----d~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i 99 (287)
.+.+.|..|+. .++.+|.+||..- +.|+.+ .+.+..+...+.+.......|+.+. -.+.+++
T Consensus 443 ~~~~~l~~El~~~~l~erl~rLe~EN----k~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~-------~~~~~~~ 511 (713)
T PF05622_consen 443 SSGDNLSAELNPAELRERLLRLEHEN----KRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEEN-------REANEKI 511 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhccchHHHHHHHHHHHHH----HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34456666664 5778888887543 233222 1223333333333333333333331 1233456
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh---hHHhhhHhHHHHHHHHHHHHHH-------HhhhhHHH-HHHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIH---NLESKALDAEDRLEEVSLQVEK-------MSEIVTEQ-WIQIQHLEQALHMAELR 168 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~---~LEsrA~dAEkkv~eL~sklek-------~~ki~~EQ-~~qIqk~E~Alk~ae~~ 168 (287)
.+|+.||+.|.+.+..++.... .+..+....-+++.+++..+.+ ++.-.... ..+|..++.+|+-.+.+
T Consensus 512 ~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e 591 (713)
T PF05622_consen 512 LELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEE 591 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHH
Confidence 7777777777777666655544 2222222222333333333333 22112222 45567777777765544
Q ss_pred H
Q 038837 169 A 169 (287)
Q Consensus 169 ~ 169 (287)
|
T Consensus 592 ~ 592 (713)
T PF05622_consen 592 M 592 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 186
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.10 E-value=54 Score=34.96 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHHhhccccCc-ccchHHHHHHHHHHHHHHHHH
Q 038837 11 LVILFWSFTLTSQNQ-QHSQQHLIAELQDAKLKIAGL 46 (287)
Q Consensus 11 ~~~~~~~~~~~s~~~-~~~~~~l~~eL~qLk~kIa~L 46 (287)
|++.|.-=-++++.+ +..+..|+.++...+..++.+
T Consensus 104 pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~ 140 (629)
T KOG0963|consen 104 PLLASAAELLNKQQKASEENEELKEELEEVNNELADL 140 (629)
T ss_pred hHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 344444444455544 555555555555544444433
No 187
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.06 E-value=13 Score=32.78 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
.+..++..++.++.++..+.+..+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~ 145 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESAS 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666666666555443
No 188
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.01 E-value=26 Score=32.37 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
+|+.+=-..|-+|-..+.+..-++++++..+..+....+.++..+...++|+...+.....-.++++.|+.++..|+.++
T Consensus 24 ~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 24 AEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 56666667788899999999999999999999999999999999999999988776656666688999999999999888
Q ss_pred hhh
Q 038837 114 RKN 116 (287)
Q Consensus 114 ekq 116 (287)
...
T Consensus 104 ~~~ 106 (202)
T PF06818_consen 104 ACA 106 (202)
T ss_pred Hhh
Confidence 875
No 189
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.78 E-value=20 Score=32.50 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+..++.+|..|++.+..-.+++..|
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776666666554
No 190
>PRK12704 phosphodiesterase; Provisional
Probab=84.65 E-value=20 Score=36.96 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=19.2
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~ 152 (287)
|+.+-.+.++..++...+|+++...+.|+-
T Consensus 126 Le~~~~~~~~~~~~~~~~l~~~a~lt~~ea 155 (520)
T PRK12704 126 LEKKEEELEELIEEQLQELERISGLTAEEA 155 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334445566667777777777777766654
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.55 E-value=28 Score=32.05 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=6.9
Q ss_pred HHhhhHHHHHHHHhhh
Q 038837 73 DMTNKIHHLQSLLSKI 88 (287)
Q Consensus 73 eks~kI~sLqsEi~sL 88 (287)
++...|..|..++++|
T Consensus 53 ~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 53 ELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 192
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.54 E-value=27 Score=34.72 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
++.||.+...+...+.+.+.++..+-..+..++..+.+-...|..--..+-.- ...--..+.+...|++++..+++.+.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777777777777777777777777777766644322222111 11112244555666666666665555
Q ss_pred hhhh
Q 038837 115 KNNF 118 (287)
Q Consensus 115 kqn~ 118 (287)
+.+.
T Consensus 367 ~~~~ 370 (458)
T COG3206 367 KLPK 370 (458)
T ss_pred hchH
Confidence 4443
No 193
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.14 E-value=24 Score=38.15 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=51.7
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
++-+-.+..+-.+..+|..|.+.+.+|++.--.-...+.+|+.+...|++.+-+-+.+...+|-+.+..+..++.+..
T Consensus 573 en~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 573 ENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444666777888899999999988664333345578888888888888888777766665444444433333333
No 194
>PF14992 TMCO5: TMCO5 family
Probab=83.94 E-value=9.5 Score=36.75 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=44.4
Q ss_pred HhHHHhhhHHHHHHHHhhh-h-ccchhHHHH--------HHHHHHHHHHHHHHHhhhhhhhhhHHhhh-----------H
Q 038837 70 LVDDMTNKIHHLQSLLSKI-K-DDSSRAEER--------LNALEEEIRLLWAASRKNNFDIHNLESKA-----------L 128 (287)
Q Consensus 70 ~i~eks~kI~sLqsEi~sL-k-k~s~~aee~--------i~eLEkQVe~L~~elekqn~~~~~LEsrA-----------~ 128 (287)
-|++++..|++|.+||.-. . .+-.+.+.. .++||.+-.+|.+.-+.-..+...|..+- .
T Consensus 26 ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~ 105 (280)
T PF14992_consen 26 KIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDP 105 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCcc
Confidence 4667777777777777755 1 222222211 34444444444433333322222222221 1
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 129 DAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
.+..++++.-.+++++..-...|..+|-+.|.
T Consensus 106 ~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 106 QLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred chhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 23344555555556666666666666666653
No 195
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.87 E-value=0.33 Score=52.53 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
.+++.|.++......+++-+-+.-.++.+.|++|......++.-..|+..++..+|.+++.+|...++++.+-.
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~ 499 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQ 499 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444445567777788888777788888889999999999999998888887766655
No 196
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.84 E-value=4.1 Score=30.77 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
+.+..+|.+....--..|++..|||++-.+|..+++.+.+-.+|
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777778888888888888888888887765544
No 197
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.79 E-value=9.5 Score=36.93 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=56.3
Q ss_pred hcc-chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHH
Q 038837 89 KDD-SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIV-------TEQWIQIQHLEQ 160 (287)
Q Consensus 89 kk~-s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~-------~EQ~~qIqk~E~ 160 (287)
|.| +..+=.+|.+||.|+++|++|--.-.+..++||+-......|+++-..+.-.+..-| +..-+.-+++.+
T Consensus 9 KeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 9 KEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSH 88 (307)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH
Confidence 555 555678899999999999999999999999999999988888887766655544332 222334445555
Q ss_pred HHHHHH
Q 038837 161 ALHMAE 166 (287)
Q Consensus 161 Alk~ae 166 (287)
-|++-|
T Consensus 89 dlq~Ke 94 (307)
T PF10481_consen 89 DLQVKE 94 (307)
T ss_pred HHhhhH
Confidence 555433
No 198
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.64 E-value=17 Score=30.26 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGL-ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 32 l~~eL~qLk~kIa~L-ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
|..|-..||++.+-| ...|+|..+. ..+...++.++..|-.+++|++||.- +..-|++-|+.|+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~--------~~L~e~Lk~ke~~LRk~eqE~dSL~F-------rN~QL~kRV~~LQ 67 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKN--------AELKEQLKEKEQALRKLEQENDSLTF-------RNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456677777777777 4556664422 23445566677777778888877722 2345666666666
Q ss_pred HHHh
Q 038837 111 AASR 114 (287)
Q Consensus 111 ~ele 114 (287)
.|++
T Consensus 68 ~El~ 71 (102)
T PF10205_consen 68 EELE 71 (102)
T ss_pred HHHH
Confidence 6665
No 199
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.24 E-value=12 Score=38.79 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
+.++...+..|++|++..+.+ =|+-+..++-.|..|.+-...|...|+.+-+
T Consensus 464 L~~a~~~i~~LqDEL~TTr~N----------YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 464 LKEANQNISRLQDELETTRRN----------YEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666666666554 3456677777777777777777777776643
No 200
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.24 E-value=12 Score=39.84 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
+..|..++..|++++...+.....+...-.++-+.+..+-..|+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333333333333333
No 201
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.12 E-value=19 Score=40.33 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
+-+++..|..-+-..+.....+.....++|.-+.+...+++.+.....|++-++-++
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEF 451 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 344556666666556666666666666666666666666666666666666666555
No 202
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=83.09 E-value=1.5 Score=27.27 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 35 ELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~ 53 (287)
|++++|.+|..||+++++=
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999873
No 203
>PRK11281 hypothetical protein; Provisional
Probab=82.90 E-value=51 Score=37.41 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhh-ccchhHHHH-------HHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIK-DDSSRAEER-------LNALE 103 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk-k~s~~aee~-------i~eLE 103 (287)
|.+.|.++.....+.+..+.+-+..+-+=..-.+.....+.+....++.+.+.+.+.. .+..-.+.+ ...++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444455555566666677777777666652 221122222 46677
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
-|++.++.++..++...+-+..+......+++.+...++.++....+++ .+++|++.+-|
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr--~~~se~~~~~a 265 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR--LTLSEKTVQEA 265 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 7777888888888888888888888888888888888888888777633 34455544433
No 204
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.74 E-value=8.2 Score=31.64 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhccc
Q 038837 9 LLLVILFWSFTLTS 22 (287)
Q Consensus 9 ~~~~~~~~~~~~~s 22 (287)
++.+++++.+.+-.
T Consensus 8 ll~ll~~l~y~l~~ 21 (105)
T PRK00888 8 LLALLVWLQYSLWF 21 (105)
T ss_pred HHHHHHHHHHHHhc
Confidence 33444455555533
No 205
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.70 E-value=0.39 Score=50.60 Aligned_cols=13 Identities=31% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWA 111 (287)
Q Consensus 99 i~eLEkQVe~L~~ 111 (287)
+..|+.+++.++.
T Consensus 187 ~~~l~~e~~~l~~ 199 (722)
T PF05557_consen 187 IQSLESELEELKE 199 (722)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 206
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.70 E-value=0.39 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=0.0
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLE 159 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E 159 (287)
+...++..+..++..+..+..+++.+....+++..+.+..|
T Consensus 172 ~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e 212 (722)
T PF05557_consen 172 ELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAE 212 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555565555555555555554444333
No 207
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.47 E-value=25 Score=35.98 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHH----HhHHhHHHhhhHH----------HHHHHHhhh----hcc
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEE----RDKLVDDMTNKIH----------HLQSLLSKI----KDD 91 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e----~Ek~i~eks~kI~----------sLqsEi~sL----kk~ 91 (287)
..|+.|.+.++..|..|+.+|+...-++...+..... .++..++.+..+. .+..|+..+ ...
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~ 356 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQ 356 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666664443333333332222 2333334443333 333444333 222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHH
Q 038837 92 SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV----EKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 92 s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl----ek~~ki~~EQ~~qIqk~E~Al 162 (287)
.+...-++.+-+.|+++|+..+..-- .. +.-.|.|+++..|+.-| ..++....|-+.-.=++|+..
T Consensus 357 ~s~~~~k~~~ke~E~q~lr~~l~~~~-~~----s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 357 KSPLQLKLKEKESEIQKLRNQLSARA-SS----SSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh-cc----CCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 44455567888999999998876633 11 12358899999988433 445555555442222444433
No 208
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.47 E-value=13 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
+=+..|++.++.+...+.+.+.+...++....+.++++.++
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577777777777777777777777776666666666654
No 209
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.41 E-value=38 Score=30.70 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHH----HHHHHHHHHHHhhhhHHHH----------HHHHHH
Q 038837 93 SRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDR----LEEVSLQVEKMSEIVTEQW----------IQIQHL 158 (287)
Q Consensus 93 ~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkk----v~eL~sklek~~ki~~EQ~----------~qIqk~ 158 (287)
+.||.+-.-||+|.+-..+-++.-+.+...+-.+...+++- ..++.++++++++.-.|.. .+|+.+
T Consensus 67 ~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~L 146 (178)
T PF14073_consen 67 SAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKEL 146 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999998888877666655554444444443 5567777777766643322 567777
Q ss_pred HHHHH
Q 038837 159 EQALH 163 (287)
Q Consensus 159 E~Alk 163 (287)
|.-|+
T Consensus 147 E~KL~ 151 (178)
T PF14073_consen 147 EEKLQ 151 (178)
T ss_pred HHHHH
Confidence 66554
No 210
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=82.38 E-value=6.1 Score=29.79 Aligned_cols=74 Identities=12% Similarity=0.276 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
+++++.+|..+...-. ..|...|.+.+..+.|...-|..|+-|+.++ .........++.....+...|+++++
T Consensus 5 ~~~i~~~l~~~~~~~~------~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSG------EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHGGGS-C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666766642211 2466778888888888888888888888777 33344445557777777777777665
Q ss_pred h
Q 038837 115 K 115 (287)
Q Consensus 115 k 115 (287)
+
T Consensus 79 ~ 79 (79)
T PF05008_consen 79 K 79 (79)
T ss_dssp H
T ss_pred C
Confidence 3
No 211
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=82.29 E-value=50 Score=36.00 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 038837 148 VTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 148 ~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
+.+-+..++++||++..-|.+
T Consensus 589 v~dLR~~L~~~Eq~aarrEd~ 609 (961)
T KOG4673|consen 589 VEDLRQTLSKKEQQAARREDM 609 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655443
No 212
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.25 E-value=10 Score=32.36 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~ 138 (287)
.....++|..++.++...+.+.+.+.......|-|+.++.
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777888888888888887777766666666665553
No 213
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.94 E-value=19 Score=32.52 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=53.1
Q ss_pred hhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh---hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH
Q 038837 54 IRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI---KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDA 130 (287)
Q Consensus 54 ~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL---kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dA 130 (287)
.-.+.++...+..+|+ ..=++..|++-|+.| |.+....-+..+.+|+++..- .-+...+|+...+.
T Consensus 68 ~~~f~~~~~tl~~LE~----~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-------~~~~~~~e~~i~~L 136 (190)
T PF05266_consen 68 RSSFESLMKTLSELEE----HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-------EAELKELESEIKEL 136 (190)
T ss_pred HHHHHHHHHHHHHHHH----cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHH
Confidence 3344445555655553 445677777777755 666666666666666666554 22334555556666
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 131 EDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 131 Ekkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
|.++.+|..+...+.+...+-...|-.+
T Consensus 137 e~ki~el~~~~~~~~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 137 EMKILELQRQAAKLKEKKEAKDKEISRL 164 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555554444444444433
No 214
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.67 E-value=30 Score=39.52 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=49.5
Q ss_pred HHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH---Hh
Q 038837 50 LEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNL---ES 125 (287)
Q Consensus 50 i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~L---Es 125 (287)
++++.+.++.+++..++++..|.........|+.+-..| ...-..+++++.+.+++.+.|.+.++....+...+ .+
T Consensus 453 ~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 453 LDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666655555555422222 33334455566666666666665555444443333 33
Q ss_pred hhHhHHHHHHHHHHHHH
Q 038837 126 KALDAEDRLEEVSLQVE 142 (287)
Q Consensus 126 rA~dAEkkv~eL~skle 142 (287)
.+.+...+|..+-.+|+
T Consensus 533 ~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 533 NAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 44455556655555554
No 215
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.58 E-value=22 Score=28.41 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
.+++.+|+.|..+--....+.+..++|++..|.--.+++.+|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666654
No 216
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.35 E-value=72 Score=35.51 Aligned_cols=34 Identities=24% Similarity=0.046 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHHHHH
Q 038837 138 SLQVEKMSEIVTEQWIQIQHLEQA----------LHMAELRAAN 171 (287)
Q Consensus 138 ~sklek~~ki~~EQ~~qIqk~E~A----------lk~ae~~~~k 171 (287)
...-++.+.-.++||..|=-+|+. |+-|.+.+-.
T Consensus 385 ~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~ 428 (1265)
T KOG0976|consen 385 LELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDL 428 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 333344555577888888888888 7766665433
No 217
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.18 E-value=31 Score=28.91 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=32.5
Q ss_pred HHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 72 DDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 72 ~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
.++..+.++|+.+++..|-+-.--..+-.+|+..++.|+..-...+..+.-|+++..|+.+-++.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777666433222233334455555555555555555555555555555444443
No 218
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.17 E-value=68 Score=32.79 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=49.5
Q ss_pred hHHHhhhHHHHHHHHhhh--hc-------cchhHHHH-----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 71 VDDMTNKIHHLQSLLSKI--KD-------DSSRAEER-----LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sL--kk-------~s~~aee~-----i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
..-.+.+-+.|++++..| .. .|+.++.+ +.-|..||..|+...++...+..+|..+++-++.+-++
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~e 218 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEE 218 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666655 11 13333322 46677888899988888888888899999999988888
Q ss_pred HHHHHHH
Q 038837 137 VSLQVEK 143 (287)
Q Consensus 137 L~sklek 143 (287)
|.+.-..
T Consensus 219 la~r~aa 225 (499)
T COG4372 219 LARRAAA 225 (499)
T ss_pred HHHHHHH
Confidence 8765543
No 219
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=81.15 E-value=65 Score=33.75 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLES 125 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEs 125 (287)
..+.++.+-|+.|..+|+..|.+..++.+
T Consensus 412 ~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks 440 (531)
T PF15450_consen 412 KHLKEVQEKVDSLPQQIEEVSDKCDLHKS 440 (531)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33677777777777777777776665543
No 220
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.84 E-value=16 Score=36.35 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh--hccchhHHHH--HHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI--KDDSSRAEER--LNALEEEIRLLWAA 112 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~s~~aee~--i~eLEkQVe~L~~e 112 (287)
.+++.+=.+||-++++..++.+.|.+.-.++.....|.-.-++.|-+|.... .-.+.-.-.| |++||..|+-|.-|
T Consensus 137 ~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777888888888888888888888888888888888887755 3334444444 89999999999988
Q ss_pred Hhhh
Q 038837 113 SRKN 116 (287)
Q Consensus 113 lekq 116 (287)
++..
T Consensus 217 irnL 220 (401)
T PF06785_consen 217 IRNL 220 (401)
T ss_pred HHHH
Confidence 8764
No 221
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.76 E-value=92 Score=34.00 Aligned_cols=19 Identities=37% Similarity=0.181 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038837 99 LNALEEEIRLLWAASRKNN 117 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn 117 (287)
..+++...+.|....++.+
T Consensus 625 ~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 625 ENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 222
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.74 E-value=29 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=11.2
Q ss_pred hHHHHHHHHHH--HHHHHHHHH
Q 038837 148 VTEQWIQIQHL--EQALHMAEL 167 (287)
Q Consensus 148 ~~EQ~~qIqk~--E~Alk~ae~ 167 (287)
++.|+..|+.+ +++-+++++
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDEL 704 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666654 555555443
No 223
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.67 E-value=75 Score=32.95 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=11.1
Q ss_pred hHHhHHHhhhHHHHHHHHhhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sL 88 (287)
...+......-..|..|++.+
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666655
No 224
>PRK00106 hypothetical protein; Provisional
Probab=80.65 E-value=33 Score=35.84 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=20.4
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWI 153 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~ 153 (287)
++.+-.+.++..++...+|+++.+.+.||-+
T Consensus 141 Lee~~~~~~~~~~~~~~~Le~~a~lt~~eak 171 (535)
T PRK00106 141 IDEREEQVEKLEEQKKAELERVAALSQAEAR 171 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4444555666677777788887777776653
No 225
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.44 E-value=42 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.246 Sum_probs=62.4
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
=+...+-+.+|+.|..|+..-......-.+.|..|-.||=.|++.....-.+.+.|-.....+...=..|..+|..+++-
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778889999999876666666777778888888888888888887777777777777777777777777666554
Q ss_pred hHH
Q 038837 148 VTE 150 (287)
Q Consensus 148 ~~E 150 (287)
..|
T Consensus 285 Y~E 287 (306)
T PF04849_consen 285 YAE 287 (306)
T ss_pred HHH
Confidence 443
No 226
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=80.43 E-value=12 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
.+|-.-...+..+++.|+.-++.++..+..|..++..-+.+|.++.+
T Consensus 14 ~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 14 QELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556889999999999999999999999988888887654
No 227
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.38 E-value=60 Score=36.88 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
..++-|++.|..++...+...+-+..+...+.++++.+...++.++....+++ -+++|++++-|+..
T Consensus 183 ~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR--~~~se~~~~~~~~~ 249 (1109)
T PRK10929 183 AALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR--QREAERALESTELL 249 (1109)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 55777888888888888888888888888888999999998888888887754 35666666655543
No 228
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.31 E-value=12 Score=34.86 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLW 110 (287)
Q Consensus 96 ee~i~eLEkQVe~L~ 110 (287)
++++.+|.||.+.+.
T Consensus 178 ~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQ 192 (216)
T ss_pred HHHHHHHHHHHHHcc
Confidence 333344444444333
No 229
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.25 E-value=25 Score=28.54 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLE 51 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~ 51 (287)
..++++++.++..+-+.+.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~ 27 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQ 27 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 230
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.09 E-value=18 Score=40.62 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhh
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIK 89 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk 89 (287)
-++++|+.+=-+|.-+|.+... +.+ .+++-+.-|.-.+..|..+..++++++
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~--~~~--e~~~v~~~i~~le~~~~~~~~~~~~~k 703 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK--RRK--EVSSVESKIHGLEMRLKYSKLDLEQLK 703 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887788777777665 333 555555555555555555555555665
No 231
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=79.97 E-value=19 Score=30.24 Aligned_cols=91 Identities=16% Similarity=0.314 Sum_probs=58.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHH
Q 038837 24 NQQHSQQHLIAELQDAKLKIAGLETMLEES----IRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERL 99 (287)
Q Consensus 24 ~~~~~~~~l~~eL~qLk~kIa~LES~i~e~----~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i 99 (287)
+++.+...+...+..|+.-|..++++|... -..|-.--..+.+.+..+..+...|.+|+.-++.|+..-...=+++
T Consensus 23 ~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~ 102 (132)
T PF10392_consen 23 NNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKI 102 (132)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444555556677788888887777666553 3445555566666777777777777777777777666555555666
Q ss_pred HHHHHHHHHHHHHHh
Q 038837 100 NALEEEIRLLWAASR 114 (287)
Q Consensus 100 ~eLEkQVe~L~~ele 114 (287)
..+-.+.++|+...+
T Consensus 103 ~~~~~~L~rl~~t~~ 117 (132)
T PF10392_consen 103 QKLTSQLERLHQTSD 117 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655443
No 232
>PRK15396 murein lipoprotein; Provisional
Probab=79.96 E-value=10 Score=30.01 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 7 LTLLLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~ 58 (287)
|.+..+++++ +.|+.=.-.+.-..|.++++.|+.++.+|.+.+........
T Consensus 6 l~l~av~ls~-~LLaGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 6 LVLGAVILGS-TLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred HHHHHHHHHH-HHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344444444 45532222234456777777777777777777766554443
No 233
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=79.82 E-value=7.8 Score=32.44 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
+.|..++++++..+..|.+.+....
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~ 33 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQ 33 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666655555543
No 234
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.69 E-value=2.7 Score=31.22 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIR 55 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~q 55 (287)
..++.++.+|+.++..|+...++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444433
No 235
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.36 E-value=51 Score=34.27 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hcc-chh-HHHHH-------------
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDD-SSR-AEERL------------- 99 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~-s~~-aee~i------------- 99 (287)
..+-|.+|-.+.+.+.+..+.=-+---.|++..+.-.+.|+.|--+.-.++-+ ++| .+. +||++
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~ 429 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNA 429 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcC
Confidence 35556667777777777664444445578888888889999999999999999 776 333 33331
Q ss_pred -HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHH
Q 038837 100 -NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEE---VSLQVEKMSEIVTEQWIQIQHLE 159 (287)
Q Consensus 100 -~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~e---L~sklek~~ki~~EQ~~qIqk~E 159 (287)
.++---|..|..-+|-+|+-....|+...|.++-.+. |+.+.|.+.+.+.=-+...++++
T Consensus 430 Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 430 PNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred hHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455556777777888888888888888888776654 55555666666555555555554
No 236
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=79.26 E-value=4 Score=42.54 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
..++|+-||-++..|+.|...-+..+|.||.+-.+++|+|-+|++-....+|.+-|
T Consensus 595 ~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhd 650 (790)
T PF07794_consen 595 YAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHD 650 (790)
T ss_pred hHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 44779999999999999999999999999999999999999999988777776554
No 237
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.22 E-value=13 Score=28.95 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~ 53 (287)
.++.++..++.++..|+..+.+.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555543
No 238
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=79.09 E-value=83 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=18.4
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHH
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQ 151 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ 151 (287)
.+|++...=-..+++.+..+|+.+++.....
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~ 166 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSFGKEAQE 166 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666666554433
No 239
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.90 E-value=19 Score=37.60 Aligned_cols=79 Identities=11% Similarity=0.234 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQI 155 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qI 155 (287)
.++.+++.-++.|+.+....-..+....++++.|+++++.... .+++--++.+.-.+.+...++.+.+...+-+.++
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~---~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQ---KIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHH
Confidence 3455555555566444444444556666688888887754433 3333345555555666666666666666666666
Q ss_pred HH
Q 038837 156 QH 157 (287)
Q Consensus 156 qk 157 (287)
+.
T Consensus 268 ~~ 269 (555)
T TIGR03545 268 EN 269 (555)
T ss_pred HH
Confidence 53
No 240
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.63 E-value=82 Score=32.16 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=24.9
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAE 166 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae 166 (287)
.|+.+...|.-.-.+=.+-+..|++.+..-++-..|-..+-.-+++.+.-++
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444454444555555556666665555554444433333333333333
No 241
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.22 E-value=68 Score=34.36 Aligned_cols=115 Identities=24% Similarity=0.359 Sum_probs=69.5
Q ss_pred HHHHHHHhhhhcCch-------hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 47 ETMLEESIRKVNGKS-------NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 47 ES~i~e~~qel~~Kd-------~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
|-.|-|++|=|..|. +-|.+- .+.+-.-.-|++|+++-|-.+.--+++|++||+++.+++.+.+.-+.+
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakV----DeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKV----DELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHH----HhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788887777664 233332 333333445788888877778888999999999999999888776555
Q ss_pred hhhHHhhhHhHH-HHHHHHH----HHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 120 IHNLESKALDAE-DRLEEVS----LQVEKMSEIVTE---QWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 120 ~~~LEsrA~dAE-kkv~eL~----sklek~~ki~~E---Q~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
+++.| +++-.-- ..+| |+....| =|-++..|+.|.+-+||- +|.++
T Consensus 380 -------~~~~e~ddiPmAqRkRFTRvE-MaRVLMeRNqYKErLMELqEavrWTEMi--RAsre 433 (832)
T KOG2077|consen 380 -------AKDDEDDDIPMAQRKRFTRVE-MARVLMERNQYKERLMELQEAVRWTEMI--RASRE 433 (832)
T ss_pred -------hcccccccccHHHHhhhHHHH-HHHHHHHHhHHHHHHHHHHHHHhHHHHH--HHhhc
Confidence 22221 1111111 1122 2222222 145677888888887765 55555
No 242
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.11 E-value=15 Score=33.06 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=51.4
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
|..+.+....+..++..+.. ..-..+.+...|++.-+.|.+.-+..+.....++.+-.+.+..+.+...+|+++.+.
T Consensus 70 E~E~~~~~~el~~~E~rl~~---rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAgl 146 (201)
T PF12072_consen 70 ERELKERRKELQRLEKRLQQ---REEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGL 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444444444444321 112223333333444444444444444455567777788888899999999999999
Q ss_pred hHHHHH--HHHHHHHHH
Q 038837 148 VTEQWI--QIQHLEQAL 162 (287)
Q Consensus 148 ~~EQ~~--qIqk~E~Al 162 (287)
+.|+=+ -+.++|.-+
T Consensus 147 T~eEAk~~Ll~~le~e~ 163 (201)
T PF12072_consen 147 TAEEAKEILLEKLEEEA 163 (201)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 887653 344555433
No 243
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.84 E-value=0.71 Score=50.03 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 47 ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 47 ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
|+.+++...++..-...-.-+....+-+..+|+.|+++++-.....-.+++++.-..-++..|..+|..-+.....+|.-
T Consensus 636 E~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~ 715 (859)
T PF01576_consen 636 ESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKE 715 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333222222333444556677777777776666666677777777778888888888888888888888
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKMSEIVT-EQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki~~-EQ~~qIqk~E~Alk~ae~~ 168 (287)
=...|..|.+|..+|+.++.... --+..|.++|.-++-.|.+
T Consensus 716 k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~ 758 (859)
T PF01576_consen 716 KKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEE 758 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHH
Confidence 88888888888888888776533 3456777777655544443
No 244
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=77.82 E-value=49 Score=32.18 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGL-----ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~L-----ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~ 86 (287)
.+...|++++.|+..+ .+.|.... +.|.+..+.|.+..++|.+|+..|.
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~-------~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAE-------ESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447788888777544 33333333 3444445555555566666665554
No 245
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.81 E-value=35 Score=38.28 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=52.4
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
+.++++|+.+.+-..+|...++++..-...--..-+++.+.++.|+.+++++|.-..+....+.++..|.|-+.++...|
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555555555555433222222233556888888888888888888888888888888888777777666
Q ss_pred HH
Q 038837 142 EK 143 (287)
Q Consensus 142 ek 143 (287)
.+
T Consensus 356 ~~ 357 (1072)
T KOG0979|consen 356 QE 357 (1072)
T ss_pred hh
Confidence 44
No 246
>PF15456 Uds1: Up-regulated During Septation
Probab=77.26 E-value=39 Score=28.68 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
.|+++|+-++..|.+.|+-..+. +. +|.-+++.-..+..+-+- -+++.....+.+..=|++...+.+-+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~k-------l~-le~k~RdAa~sl~~l~~~---~~~~~~~~~~~~~~~eeel~~~~rk~ 90 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRK-------LA-LESKIRDAAHSLSRLYSS---SSRRARFSRESSLKAEEELAESDRKC 90 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHhcCC---CccccCCCcchHHHHHHHHHHHHhhH
Confidence 48899999999999998886632 33 555555544444333222 12111111122222223333333333
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
+....+...+|.|+.+...|+-+.+.
T Consensus 91 ee~~~eL~~le~R~~~~~~rLLeH~A 116 (124)
T PF15456_consen 91 EELAQELWKLENRLAEVRQRLLEHTA 116 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666555443
No 247
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.20 E-value=1.2e+02 Score=33.26 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhH----HhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDK----LVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEE 104 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek----~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEk 104 (287)
-+|+.+|+..-.+-.++|.++.- =|..|+++=+ .-.|-+++|+.-....+.= .+-...-|.++.++.+
T Consensus 27 ~~lk~~l~~~~~~~~~~e~r~~h-------ld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~ 99 (769)
T PF05911_consen 27 ASLKQQLEAATQQKLALEDRVSH-------LDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK 99 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhh-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677777766666666666555 3455555533 2235566666555544332 3334455666666666
Q ss_pred HHHHHHHHHhhhhh-------hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 105 EIRLLWAASRKNNF-------DIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 105 QVe~L~~elekqn~-------~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
++..+..+--..+. -+..|......||..+..|..+|+-++|-|.--+-.++
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544332221 22334444556777788888888888888776554433
No 248
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.03 E-value=20 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=37.3
Q ss_pred HhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 70 LVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 70 ~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
+....+.+|+.+...|+.|+.-...-.++..+|.++-+.|..+..+...+ -+....|+..|-.|++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e-------~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE-------RNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence 34567788888888887775444444444444444455555544444444 4444555555554444
No 249
>PRK12704 phosphodiesterase; Provisional
Probab=76.62 E-value=29 Score=35.92 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhccchh
Q 038837 235 HHELQGFIKQEMVKNKLTA 253 (287)
Q Consensus 235 H~qvQ~~I~~~L~~hElt~ 253 (287)
|..+-..+..+--++.++.
T Consensus 316 ~~~i~~ll~~l~~R~~~~q 334 (520)
T PRK12704 316 HPELIKLLGRLKYRTSYGQ 334 (520)
T ss_pred HHHHHHHHHHhhccCcCCC
Confidence 4444554444433444544
No 250
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=85 Score=34.00 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWI 153 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~ 153 (287)
+.++...++-|+-.+++.+.+.+-++-...+++..++.++-+..+++.-.+.-++
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444455555555554444444444433333
No 251
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.51 E-value=61 Score=30.23 Aligned_cols=32 Identities=31% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAED 132 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEk 132 (287)
+|..+=...-.+|+..|.|+..||+-...++.
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333346677777777777766655544
No 252
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.39 E-value=1.4e+02 Score=33.50 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHH
Q 038837 30 QHLIAELQDAKLKIAGLETML-------------EESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAE 96 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i-------------~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae 96 (287)
+-||.|+.||++.-.++|.-. +.+-.++++|-..+.+.-...-.|-++|+ -.+++--..-.+.+
T Consensus 389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~---kQle~~~~s~~~~~ 465 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQ---KQLESAEQSIDDVE 465 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHH
Confidence 346666666665555554333 23334444444444444333333333332 11221111122667
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+...+|.++|+.++++...-+.+.+.........+..+.-+--+++.++..
T Consensus 466 ~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 466 EENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888877777666555554444444444444444444444444433
No 253
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.21 E-value=7.4 Score=29.46 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIH 79 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~ 79 (287)
...|..|-.|++.+|.-|++.++.+-.=...|..++..++.+..++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666664444433344444433333333333
No 254
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.06 E-value=72 Score=35.86 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhHHH
Q 038837 235 HHELQGFIKQEMVKNKLTAALANEELVF 262 (287)
Q Consensus 235 H~qvQ~~I~~~L~~hElt~~lAtkeLvW 262 (287)
|.+-=.++-++|+++-|-..-..+.++=
T Consensus 708 hEk~lD~~ieLLkk~qlDEntn~e~i~k 735 (1243)
T KOG0971|consen 708 HEKSLDFLIELLKKDQLDENTNVEPITK 735 (1243)
T ss_pred HHHHHHHHHHHHhhcccccccCcchHHH
Confidence 7777777888899887755444444333
No 255
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.78 E-value=41 Score=27.25 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
|++.+....+.+..+..+...-..+|....+.-.+.+.+++++..-...-...|.+++..+.
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555443
No 256
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=75.67 E-value=23 Score=40.10 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH-hHHhHHHhhhHHHHHHHHhhhhccchhHHHH----HHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER-DKLVDDMTNKIHHLQSLLSKIKDDSSRAEER----LNALE 103 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~-Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~----i~eLE 103 (287)
+..||-++...|..+..| =...+-.+-...+..+.. |.+|.+.+++|+.|+.. +...++.=++ ...|.
T Consensus 1065 s~eLReQIq~~KQ~LesL---QRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~----k~~~l~~ikK~ia~lnnlq 1137 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESL---QRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKA----KLDNLDSIKKAIANLNNLQ 1137 (1439)
T ss_pred hHHHHHHHHHHHHHHHHH---HHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHHHHH
Confidence 457888888888774444 333333333444444444 88899999999888765 4444443333 58899
Q ss_pred HHHHHHHHHHhhhhhhhhhHH-hhhHhHHHHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLE-SKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LE-srA~dAEkkv~eL~skle 142 (287)
++|..|.+|--.+......+. |-.+..|++++.++.||-
T Consensus 1138 qElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~ 1177 (1439)
T PF12252_consen 1138 QELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLY 1177 (1439)
T ss_pred HHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhH
Confidence 999999998888877655543 334455666666666653
No 257
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=75.64 E-value=83 Score=31.10 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchh--HHHHHHHHHH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSR--AEERLNALEE 104 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~--aee~i~eLEk 104 (287)
.+.+++..+.+...--..||.++....+++..=...|..+++-|++|+.-+.--|.-+++= .+.... -+.=-..|-+
T Consensus 245 vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~ 324 (384)
T PF03148_consen 245 VNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIE 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHH
Confidence 3477778888888888888888888888887777788888888888777766666665543 222221 1111255656
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
||..|...+.+.+.+ ...|+..+..|..-...++
T Consensus 325 Ev~~l~~~i~~L~~~-------L~~a~~~l~~L~~~~~~Le 358 (384)
T PF03148_consen 325 EVKELRESIEALQEK-------LDEAEASLQKLERTRLRLE 358 (384)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 666666666655554 4456666655555444443
No 258
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=75.17 E-value=6.4 Score=30.80 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHhhccccCcccch---------HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 12 VILFWSFTLTSQNQQHSQ---------QHLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 12 ~~~~~~~~~~s~~~~~~~---------~~l~~eL~qLk~kIa~LES~i~e 52 (287)
+.+-+.+-|.|.....++ ..|...-+.|..+|..||+.+++
T Consensus 18 ap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 18 APLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333445566655333221 33344445566666666666654
No 259
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=74.75 E-value=8.3 Score=39.63 Aligned_cols=45 Identities=4% Similarity=-0.064 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQ 140 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sk 140 (287)
+.++.+||+|++.|+.+++....+...+|++.++-|..+..|..+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345778888888887777655555444444444444433333333
No 260
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.71 E-value=73 Score=29.63 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT---EQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~---EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
...+.+++..-.+++.+.-+.=+.....|..|+.|.++...+.++-++.+. +-..++.+++..+.-+..........
T Consensus 119 ~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k 198 (241)
T cd07656 119 GSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777888888888888999999999999999999887665432 23344555666666566555555555
Q ss_pred hhchhhHH-------HHHHHHhhcccccchhcccCCc
Q 038837 176 LMYARCTF-------LKFVKDFSEKHLPKLTGMLVPY 205 (287)
Q Consensus 176 a~p~~~~f-------~k~~~~~~~ph~~kv~~~~~py 205 (287)
++-+++.+ ..-...+....+|.+.+..|--
T Consensus 199 ~~~akNeYll~l~~aN~~~~~yy~~~lp~lld~ld~g 235 (241)
T cd07656 199 CTKARNEYLLNLAAANATIHKYFVQDLSDLIDCMDLG 235 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 55455433 2333444455566666666543
No 261
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=74.38 E-value=12 Score=29.44 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+.|+.+|+.+|+.|+..+.. ...|..|......++..|+.+|..++.+
T Consensus 17 d~KVdaLq~~V~~l~~~~~~----v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNLPD----VTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444322 2234444445555666666666665554
No 262
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.23 E-value=1.6e+02 Score=33.47 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh---hcc---chhH-HHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIR----KVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI---KDD---SSRA-EERLNA 101 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~q----el~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL---kk~---s~~a-ee~i~e 101 (287)
+.++-.+.-+-..+|..|.+..| +++-+|+-+++-+.+-.+-...= ..+++.+ .++ +.+. .++..+
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~e 406 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAE 406 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344444444445666666666 66666666655544433333221 3333322 111 2222 122455
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
+|..+..|...++........|..+-...+....++...+.+++.-...-..++..+-..|.-
T Consensus 407 lE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~ 469 (1141)
T KOG0018|consen 407 LEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVE 469 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555444444444444444433
No 263
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=73.98 E-value=64 Score=33.34 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHh-hhhc-cchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhh
Q 038837 75 TNKIHHLQSLLS-KIKD-DSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIV 148 (287)
Q Consensus 75 s~kI~sLqsEi~-sLkk-~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~ 148 (287)
-.+..+|..||. .++. -......++..-.++++.|+++++..+.-...++ ++.+++..++.++...
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~--------~L~~i~~~l~~~~~al 119 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE--------QLQEIDELLEEVEEAL 119 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 344555677773 3333 2344556677778888888888887777666664 3444444444444443
No 264
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=73.97 E-value=57 Score=34.31 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=86.4
Q ss_pred chhhHH-HHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHH
Q 038837 60 KSNYIE-ERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 60 Kd~~l~-e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~ 138 (287)
|+..+= -+.|..++--.++.+++-+|.+..+..+--.|.+..|..|+=-+++.++-.+-+++-+-.......++=.+++
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~ 274 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334443 4578888888999999999988866666677778888888888888888888888888888888888889999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038837 139 LQVEKMSEIVTEQWIQIQHLEQALHMAE 166 (287)
Q Consensus 139 sklek~~ki~~EQ~~qIqk~E~Alk~ae 166 (287)
.+++-+++-..|--.-.-.+|.-|+-+.
T Consensus 275 aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 275 AELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988887777777777777554
No 265
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.47 E-value=33 Score=28.58 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
++=...|++.++-+..++....++...++....+.+.++.++-.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777666666666666666666666665544
No 266
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.41 E-value=35 Score=34.37 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
..+..||.+++.....|+-.++...
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888887777644
No 267
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=73.39 E-value=37 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 129 DAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
++-+..-+|...++.+.+-+.+-+..++++++|+
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555566666666666666666654
No 268
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.14 E-value=1.4e+02 Score=32.13 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhh
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRK 115 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elek 115 (287)
++..-.+...+++.+.....+|...-+.+.+.+ .....++.+-..|.+..+ +..+++..+.-|....+.
T Consensus 170 ~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~-------~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~ 238 (670)
T KOG0239|consen 170 LDLALKESLKLESDLGDLVTELEHVTNSISELE-------SVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLEST 238 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhH
Confidence 334445555556666555544433333333332 222224444444411111 233455555555555556
Q ss_pred hhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038837 116 NNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAA 170 (287)
Q Consensus 116 qn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~ 170 (287)
+.+++..|..+..+.++++.++...+.++..-+.+.|..+..+=..|..++..+-
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777888888888888777777777776665444444444433
No 269
>PF15294 Leu_zip: Leucine zipper
Probab=73.13 E-value=55 Score=31.58 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhh--hccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 76 NKIHHLQSLLSKI--KDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 76 ~kI~sLqsEi~sL--kk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
.++..|+....+. ++..+....++..||.++-.++.++++.-.+
T Consensus 167 ~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d 212 (278)
T PF15294_consen 167 AQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQD 212 (278)
T ss_pred HHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3444455544444 2224455566888888888888777665433
No 270
>PLN02939 transferase, transferring glycosyl groups
Probab=72.90 E-value=1.1e+02 Score=34.37 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh------hhcCchhhHH-HHhHHhHHHhhhHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIR------KVNGKSNYIE-ERDKLVDDMTNKIHH 80 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~q------el~~Kd~~l~-e~Ek~i~eks~kI~s 80 (287)
..|-+.|..+|.-||-.+.|..- +-+...+.++ ++|++-+|+...+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (977)
T PLN02939 162 LTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGAT 216 (977)
T ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccc
Confidence 34556677777777777777322 2222223332 336666665554444
No 271
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.71 E-value=57 Score=29.84 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038837 34 AELQDAKLKIAGLETMLEESIRK 56 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qe 56 (287)
.|+.+|+-+|.+|+-..-+.-++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t 101 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQT 101 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 57888888888886655554433
No 272
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.56 E-value=99 Score=30.16 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 038837 136 EVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 136 eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
+|-.+++.+-+-..+=..+|+.+
T Consensus 162 el~aei~~lk~~~~e~~eki~~l 184 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQEL 184 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444
No 273
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=72.49 E-value=73 Score=28.59 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=2.9
Q ss_pred HHHHHhhc
Q 038837 13 ILFWSFTL 20 (287)
Q Consensus 13 ~~~~~~~~ 20 (287)
++++.+.|
T Consensus 11 ~vG~~~G~ 18 (201)
T PF12072_consen 11 IVGIGIGY 18 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=55 Score=27.88 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKL 70 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~ 70 (287)
++.-.++++|..+++.+.-+.......|+.=+..+.|+|++
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667777777777666544444443333333455555543
No 275
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.06 E-value=82 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.+.+|++-+.|-.++.+.+.+...+-+......++.++|.++-..+
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 4666666666666666666666666666666666777766544433
No 276
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=71.87 E-value=1.2e+02 Score=31.01 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=71.1
Q ss_pred HHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 038837 48 TMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 48 S~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA 127 (287)
++++-..++|+.+...|++.++...-.-..|+++.-|+.+..-.--..+..|.-+.++++.+--++-.--..+..=|.++
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~l 261 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQL 261 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56666667777777888888888888888888888888777333333344477777788777777666666666666777
Q ss_pred HhHHHHHHHHHHHHHHHhhh
Q 038837 128 LDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 128 ~dAEkkv~eL~sklek~~ki 147 (287)
..+|--..-|...++.+++.
T Consensus 262 q~lEt~q~~leqeva~le~y 281 (499)
T COG4372 262 QRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666666655
No 277
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.66 E-value=67 Score=33.23 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 038837 153 IQIQHLEQ 160 (287)
Q Consensus 153 ~qIqk~E~ 160 (287)
..|++.|.
T Consensus 167 ~~~~~~~~ 174 (514)
T TIGR03319 167 KLIKEIEE 174 (514)
T ss_pred HHHHHHHH
Confidence 34444443
No 278
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.64 E-value=75 Score=35.35 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~ 152 (287)
+.++|.+-+.|-+++.+-+.....| ++.-..|+.+|.+++.++.+--.+|.
T Consensus 518 ~~~le~E~~~l~~el~~~~~~~~kl---~eer~qklk~le~q~s~lkk~l~~~~ 568 (913)
T KOG0244|consen 518 KSPLESERSRLRNELNVFNRLAAKL---GEERVQKLKSLETQISLLKKKLSSQR 568 (913)
T ss_pred hcccccccHHHHHHHHhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444555555555555555533322 44445555555555555555444444
No 279
>PF14282 FlxA: FlxA-like protein
Probab=71.56 E-value=15 Score=29.93 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e 52 (287)
...+.+|+.+|..|...|.+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~ 37 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQE 37 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555544
No 280
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.53 E-value=27 Score=27.51 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=32.4
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhh--hccch-----hHHHHHHHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKI--KDDSS-----RAEERLNALEEEIRLLWAA 112 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~s~-----~aee~i~eLEkQVe~L~~e 112 (287)
+.++++|--|+-.-+.|+-||=||+-| |+.+. ++..+..+|+.+-+.|+.+
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777888899999999888 33322 2333355555555555543
No 281
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=71.41 E-value=8.9 Score=36.32 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
.+|+.+-++|...|+.||..|.+....|..-...-.... .. . .+. +.-..++.+.++-|.--|++|+.|
T Consensus 183 ~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~-------~~-~--~~~-~~~~~~~~~~de~I~rEeeEIreL 251 (259)
T PF08657_consen 183 AALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSS-------SD-D--EES-EESSEDSVDTDEDIRREEEEIREL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-------cc-c--ccc-ccccccchhHHHHHHHHHHHHHHH
Confidence 456667777777777777777777655543322111110 00 0 001 111334556777777777777777
Q ss_pred HHHHhh
Q 038837 110 WAASRK 115 (287)
Q Consensus 110 ~~elek 115 (287)
...+++
T Consensus 252 E~k~~~ 257 (259)
T PF08657_consen 252 ERKKRE 257 (259)
T ss_pred HHHHHh
Confidence 777665
No 282
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.17 E-value=64 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDR 133 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkk 133 (287)
++.+++|...++.+-...+++...+-.++.+-+.+
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444445545444444433333
No 283
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=70.99 E-value=1.2e+02 Score=32.01 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHhhcccc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccc
Q 038837 14 LFWSFTLTSQ-NQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDS 92 (287)
Q Consensus 14 ~~~~~~~~s~-~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s 92 (287)
++=.-++||+ +|-.-. .-|+.++..+.+|++.++..= .-+.+++ .+...+++.|.....-++...
T Consensus 180 l~qf~~lt~~Gd~ieA~----evl~~~ee~~~~L~~~~e~IP-------~L~~e~~---~~lP~ql~~Lk~Gyr~m~~~g 245 (570)
T COG4477 180 LSQFVELTSSGDYIEAR----EVLEEAEEHMIALRSIMERIP-------SLLAELQ---TELPGQLQDLKAGYRDMKEEG 245 (570)
T ss_pred HHHHHHhccCCChhHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---hhchHHHHHHHHHHHHHHHcc
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh-------------------------
Q 038837 93 SRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI------------------------- 147 (287)
Q Consensus 93 ~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki------------------------- 147 (287)
-+.+. ..++++.+.|+..+.++......|| ..+|+..+...+-+++.|.++
T Consensus 246 Y~l~~--~~id~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ 321 (570)
T COG4477 246 YHLEH--VNIDSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKA 321 (570)
T ss_pred CCccc--ccHHHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 148 ---VTEQWIQIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 148 ---~~EQ~~qIqk~E~Alk~ae~~~~k~q~ 174 (287)
|+.-+-.|...-+.-.+++.++..++.
T Consensus 322 ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~ 351 (570)
T COG4477 322 KENNEHLKEEIERVKESYRLAETELGSVRK 351 (570)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHH
No 284
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=70.66 E-value=38 Score=30.14 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=47.6
Q ss_pred chhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 60 KSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 60 Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
=++.|...+-...+.++++-++-..+...||+-.++.+.+..|++.|..|....+-..++...+
T Consensus 42 dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf 105 (157)
T COG3352 42 DNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPF 105 (157)
T ss_pred ChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4556666677777777777777777777788888888888888888888887777666665544
No 285
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=70.50 E-value=9.7 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhccccCcccc----h-----HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 9 LLLVILFWSFTLTSQNQQHS----Q-----QHLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 9 ~~~~~~~~~~~~~s~~~~~~----~-----~~l~~eL~qLk~kIa~LES~i~e 52 (287)
+|.+.+.+.+-|-|....++ + +.|...-+.+..+|..||+.+|+
T Consensus 15 ifVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 15 IFVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555556667744422211 1 33444446666677777776664
No 286
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.47 E-value=57 Score=31.50 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=9.6
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
...+.+..|+++|-.|+.|-..+
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 287
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.91 E-value=38 Score=32.80 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=5.8
Q ss_pred cCCcccCCcccc
Q 038837 202 LVPYLPGKGSIL 213 (287)
Q Consensus 202 ~~py~~~~~~~s 213 (287)
-+++|..++++.
T Consensus 138 k~~~W~~ak~~l 149 (344)
T PF12777_consen 138 KDTSWESAKKLL 149 (344)
T ss_dssp ---HHHHHHCHH
T ss_pred ccccHHHHHHHH
Confidence 356777666653
No 288
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.79 E-value=53 Score=31.85 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
+.+...|+-.+++|.-|++.+.. ..|..-..-=+-+..|.-.+-+...|-+-+.+.||++|||=.
T Consensus 58 etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 58 ETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444455555555544443322 222222222234445555566666666667777777777643
No 289
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.56 E-value=39 Score=31.68 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVN------GKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRA 95 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~------~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~a 95 (287)
.=|..-+++|+.+|-.+|+.++......+ .+...+.+++..|.----=|.-|+.-+-.|..|.+++
T Consensus 125 ~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~ 196 (233)
T PF04065_consen 125 DWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDP 196 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 44667789999999999999987654333 4566777777777777777777888887888887776
No 290
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=1.8e+02 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=15.8
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
..+|.+..++....+..+...+-++.++++
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k 762 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNK 762 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555544
No 291
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=69.34 E-value=83 Score=30.60 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 77 KIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 77 kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.|+-|.-|+.--|+-|-....+-.+|-+=++.|-.++|-+|+-+-.|.-+..+.+|+++.|..-++.+
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432233333333334444444555555555555555555555555555555444444443
No 292
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=69.14 E-value=51 Score=25.49 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
+.-+++++..+..++.+++...+|.+.--....+.-.-++++..++..+-..+
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45688899999999999988887776666666555555566666655555544
No 293
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=69.09 E-value=97 Score=31.54 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAAS 113 (287)
Q Consensus 97 e~i~eLEkQVe~L~~el 113 (287)
.++..|++-|+.|.+|+
T Consensus 220 ~kVdDLQD~VE~LRkDV 236 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDV 236 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666554
No 294
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.91 E-value=16 Score=35.11 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHH
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIE 65 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~ 65 (287)
-+.+|+.+|++|+..+.++-|.+-+||-.|.
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqis 256 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQIS 256 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Confidence 4688999999999888885544444443333
No 295
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.84 E-value=1.2e+02 Score=29.74 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHH-HHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERL-NALEEEIRLLW 110 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i-~eLEkQVe~L~ 110 (287)
|-..|.||+..-..||..++.- ....+..+-+.|..+..++.+++.+++.|.+-.++-|..+ .|=|-=|-+||
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~E------qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQE------QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555541 2233556667777777777777777777755555554332 22222244555
Q ss_pred HHHhhhhhhhhhHHhhh
Q 038837 111 AASRKNNFDIHNLESKA 127 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA 127 (287)
+-..+.+.++-.|+.+.
T Consensus 185 Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 296
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=68.80 E-value=69 Score=26.82 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 29 QQHLIAELQDAKL-----KIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 29 ~~~l~~eL~qLk~-----kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
.+++..+|+..+. +|+.||.-+++....=.. +.-..+....|.++..+|..-+.|+
T Consensus 26 ~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd-~~l~~e~q~ki~~~~~kV~ere~eL 86 (115)
T PF06476_consen 26 EQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTD-EGLKAERQQKIAEKQQKVAEREAEL 86 (115)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665543 566666655554322221 2233333444444444444444443
No 297
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=68.77 E-value=1.3e+02 Score=34.79 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 40 KLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 40 k~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
+++.-.|++++.+...++..=|..+-+.. +........-|..+.+.+..-......+.+++|+||..++++|++..+.
T Consensus 1007 nl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1007 NLTLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 34444455555555544444444443333 3333344455666666665555556677899999999999999854443
No 298
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=68.62 E-value=1.4e+02 Score=30.85 Aligned_cols=18 Identities=11% Similarity=-0.118 Sum_probs=8.9
Q ss_pred ccchHHHHHHHHHHHHHH
Q 038837 213 LISFMSQVQHQFKRFFLA 230 (287)
Q Consensus 213 skpyi~~~~~~~k~~l~s 230 (287)
.+|-++.+++....++..
T Consensus 274 ~~~~~~~V~~~l~~vf~f 291 (593)
T PF06248_consen 274 KRPSPKEVFSNLLLVFEF 291 (593)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 445555555544444443
No 299
>PRK14139 heat shock protein GrpE; Provisional
Probab=68.59 E-value=60 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 038837 146 EIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 146 ki~~EQ~~qIqk~E~Alk~ 164 (287)
+...+----+-.+|+|+..
T Consensus 83 ~~~~~LLpv~DnLerAl~~ 101 (185)
T PRK14139 83 SFAESLLPVKDSLEAALAD 101 (185)
T ss_pred HHHHHHhhHHhHHHHHHhc
Confidence 3444445566678888753
No 300
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.57 E-value=21 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 038837 33 IAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~ 54 (287)
...|.+|-.+|+..|.-|++.+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln 28 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELN 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 301
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.39 E-value=1.1e+02 Score=29.24 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=31.7
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhh--hccchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKI--KDDSSRAEERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~s~~aee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
+.+.-.++.+.+...+....+..+... +.|..+.+.+......++..|..++-..+.+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666 44555655554444444444444433333333
No 302
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=68.19 E-value=30 Score=26.91 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=38.8
Q ss_pred hhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 61 SNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 61 d~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
+..|..+.|..+..--+|.-|+..+... ..+.-++-++..+|.-++..|++++..-.....
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777788777777654 333444555566677777777777665555433
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.08 E-value=1.2e+02 Score=30.55 Aligned_cols=21 Identities=19% Similarity=0.318 Sum_probs=10.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHh
Q 038837 125 SKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 125 srA~dAEkkv~eL~sklek~~ 145 (287)
.||.|-.+-++....++.+|+
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544
No 304
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=67.71 E-value=1.5e+02 Score=31.24 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
++.+.+|..++.|+-+..+...-+- =..+-.|+.+.-.+|. .++|.++|.-++
T Consensus 451 k~R~~eV~~vRqELa~lLssvQ~~~--e~~~~rkiaeiqg~l~---------~~qi~kle~siq 503 (531)
T PF15450_consen 451 KAREREVGAVRQELATLLSSVQLLK--EDNPGRKIAEIQGKLA---------TNQIMKLENSIQ 503 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHHH---------HHHHHHHHHHHH
Confidence 4555666777777666555444331 1122245555555555 455555555444
No 305
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.67 E-value=1.3e+02 Score=29.43 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHH
Q 038837 38 DAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQ 82 (287)
Q Consensus 38 qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLq 82 (287)
||+..|..+++.|.+.. ..|+++++.|......|..++
T Consensus 71 ql~~~~~k~~~si~~q~-------~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQK-------RAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444 333444444444444444443
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=67.56 E-value=1.2e+02 Score=29.12 Aligned_cols=17 Identities=12% Similarity=0.388 Sum_probs=6.7
Q ss_pred hHHHhhhHHHHHHHHhh
Q 038837 71 VDDMTNKIHHLQSLLSK 87 (287)
Q Consensus 71 i~eks~kI~sLqsEi~s 87 (287)
+.+...++..++.++..
T Consensus 216 i~~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444333
No 307
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.39 E-value=62 Score=30.18 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=20.7
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
.+.+....+++++++...++|+.++-++.-++|++.+-+
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 334444455555555555555555555555555555433
No 308
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.16 E-value=40 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
+..|+++++.|.+++...+.+...++++
T Consensus 95 ~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 95 IEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444433
No 309
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.10 E-value=16 Score=37.71 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=38.3
Q ss_pred hHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 63 YIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 63 ~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
.+.+.+....|.+++|+.|++|.+-+.+...+.+++|.+||.+++.|+..++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666788888888776655566778888888888888888874
No 310
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=67.01 E-value=86 Score=34.26 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=27.9
Q ss_pred hHhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKMSEI-VTEQWIQIQHLEQALH 163 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki-~~EQ~~qIqk~E~Alk 163 (287)
..+...+++.|..++++..++ ..+-+.+|+.+||-.+
T Consensus 668 ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 668 SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 456778888888888887776 3355788888888665
No 311
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.81 E-value=92 Score=27.52 Aligned_cols=43 Identities=23% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 8 TLLLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 8 ~~~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e 52 (287)
||.|.++..+=.|.|- .+.+++-..++..|+....+|+.+-..
T Consensus 26 ~LmP~VV~vLE~Le~~--~~~n~~~~~e~~~L~~d~e~L~~q~~~ 68 (158)
T PF09744_consen 26 GLMPKVVRVLELLESL--ASRNQEHEVELELLREDNEQLETQYER 68 (158)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6788888877666321 112223346888999999999887755
No 312
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.78 E-value=1.1e+02 Score=28.28 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
..|..+..|-+.+..+....+.....|=+..++++..++.-..+-++|-.-+.+...+|.....+-+.|.....
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333334455667777788888887777777777777777777777777777665544444
No 313
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=66.67 E-value=98 Score=33.65 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
.++..+.+|+.+|+.||-.+....++---=...|..++-.+.-=--...+|+.+++.=.........+....|.++..+.
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ 407 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVS 407 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 111 AASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
..+..-..-.++=.++.+.|=.++..|+..|
T Consensus 408 eav~S~q~~L~s~ma~ve~a~aRL~sL~~Rl 438 (739)
T PF07111_consen 408 EAVSSSQQWLESQMAKVEQALARLPSLSNRL 438 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 314
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.52 E-value=35 Score=28.39 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 81 LQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 81 LqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
|..-...||++-++-+.+..+|.+++..-...||+...+.++|.=|-.-.+|||+.|-.+++.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556778888888888999999999999999999999999999999999999999888874
No 315
>PRK11020 hypothetical protein; Provisional
Probab=66.43 E-value=50 Score=28.14 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
+..||++|+.++-.+.-.++.- +..+=.+.+.+..+.+...+.+|++|-+.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa--~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAA--SLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444431 22333455666665555555555444433
No 316
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=66.34 E-value=87 Score=33.17 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q 173 (287)
+.++..-+.++.++.+..+-.+++.+|++++.+|..+++...-.++. +...|-++..|...+.++.
T Consensus 134 ~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~----l~~a~~av~~a~~~a~~a~ 199 (593)
T PRK15374 134 GEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG----YAQAEAAVEQAGKEATEAK 199 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHHHHHHHHH
Confidence 35566667788888999999999999999999999999998777776 6666666776666655554
No 317
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.30 E-value=1.5e+02 Score=29.81 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
++++..=.|||.--- -.+..+.+++-.||+++++.-.-++|.......|++-=+.|+..
T Consensus 56 f~i~~re~qlk~aa~---~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nq 114 (401)
T PF06785_consen 56 FAIGRREKQLKTAAG---QLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQ 114 (401)
T ss_pred HHhhHHHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566666667765443 34778888899999999998778888877777777665555444
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=66.08 E-value=22 Score=30.47 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038837 221 QHQFKRFFLAFKKFHHE 237 (287)
Q Consensus 221 ~~~~k~~l~sA~~yH~q 237 (287)
....++-+.+..+-+.|
T Consensus 128 ~~ql~~hl~s~~~n~~~ 144 (160)
T PF13094_consen 128 LKQLNKHLESMQNNLQQ 144 (160)
T ss_pred HHHHHHHHHHHHccHHH
Confidence 33333333333333333
No 319
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.02 E-value=32 Score=28.10 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLE 51 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~ 51 (287)
++-+.+++.+..++...+.+++
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~ 52 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQ 52 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 3334566666555555444333
No 320
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.96 E-value=2e+02 Score=31.12 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 146 EIVTEQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 146 ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
.++.+--.+|+.||+-+++.+.-.++.+.|+.
T Consensus 494 ~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE 525 (852)
T KOG4787|consen 494 EIQYSDELKIKILELEKRLSEKLAIDLVSELE 525 (852)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567899999999999999999999988
No 321
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.85 E-value=1.1e+02 Score=28.31 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh--hcc--chhHHHHHHHH-------
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI--KDD--SSRAEERLNAL------- 102 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~--s~~aee~i~eL------- 102 (287)
+.|++||..|..+|..+.+..++++ +....-...-.+-.+-|-|+..| .|+ +..+-++-.+|
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~-------~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~ 104 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVR-------EAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHEN 104 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhh
Confidence 5788888888888888888665443 33333333334555668888877 333 34444554333
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
|..+..++. ...+||.+++.++..|-+
T Consensus 105 e~~e~~ak~--------------~l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 105 EQAEEEAKE--------------ALEEAEEKVEEAFDDLMR 131 (207)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 333332222 234667777777766644
No 322
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=65.83 E-value=33 Score=29.97 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
++..++.+...|+..|..-+..+..|... -.-+++|..+++.++.-+.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666542 2334555556655555554
No 323
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.37 E-value=73 Score=28.58 Aligned_cols=22 Identities=5% Similarity=0.214 Sum_probs=10.9
Q ss_pred cccchHHHHHHH-HHHHHHHHHH
Q 038837 25 QQHSQQHLIAEL-QDAKLKIAGL 46 (287)
Q Consensus 25 ~~~~~~~l~~eL-~qLk~kIa~L 46 (287)
.|+.+|-|-..+ ++.+.-+++.
T Consensus 78 ~C~ERGlLL~rvrde~~~~l~~y 100 (189)
T PF10211_consen 78 DCPERGLLLLRVRDEYRMTLDAY 100 (189)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHH
Confidence 355566555554 4444444443
No 324
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.28 E-value=1.2e+02 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDA 130 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dA 130 (287)
++..+++.|..++.........||....+.
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 333333333333333333333333333333
No 325
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.19 E-value=20 Score=27.07 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 038837 94 RAEERLNALEEEIRLLWAASRKN 116 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekq 116 (287)
+++.+..+|+.+|+.|+++++..
T Consensus 36 eaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666544
No 326
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=65.06 E-value=19 Score=28.32 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAAS 113 (287)
Q Consensus 99 i~eLEkQVe~L~~el 113 (287)
|+++..+|..|+..+
T Consensus 13 Ik~vd~KVdaLq~~V 27 (75)
T PF05531_consen 13 IKAVDDKVDALQTQV 27 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 327
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=64.94 E-value=79 Score=26.13 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccc--hhHHHH---HHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDS--SRAEER---LNALEE 104 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s--~~aee~---i~eLEk 104 (287)
..+...+++|+.+-..|...++++...|..--......+.... ...-|...+..+....... ...+++ ...+..
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~ 153 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEE 153 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444444444433333333332222 3333333333333331111 112222 234444
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhH-----HHHHHHHHHHHHHHhhhhHHHH
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDA-----EDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dA-----Ekkv~eL~sklek~~ki~~EQ~ 152 (287)
.+......++..+.....|-.....+ +.+++.++..-+.+.....+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ 206 (213)
T cd00176 154 ELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQ 206 (213)
T ss_pred HHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444432 4444455444444444444433
No 328
>PRK11519 tyrosine kinase; Provisional
Probab=64.82 E-value=2e+02 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHH
Q 038837 41 LKIAGLETMLEESIRKVNGKSNYIEE 66 (287)
Q Consensus 41 ~kIa~LES~i~e~~qel~~Kd~~l~e 66 (287)
.-+.=|+.++.+..++|+..+..+++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444444444433
No 329
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.76 E-value=2.1 Score=45.16 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchh----HH---HHHHHHHHH
Q 038837 34 AELQDAKLKIAGL-ETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSR----AE---ERLNALEEE 105 (287)
Q Consensus 34 ~eL~qLk~kIa~L-ES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~----ae---e~i~eLEkQ 105 (287)
.|-..|+.++..+ ++.+......|........+++...+....+|..|+++++.+.++... .+ .....|+++
T Consensus 466 ~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~ 545 (713)
T PF05622_consen 466 HENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEH 545 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3334554444333 233344444444444555566677777778888888888877333111 11 223556665
Q ss_pred HHHHH---HHHhhhhhhhhhHHhhhHhH-HHHHHHHHHHHH
Q 038837 106 IRLLW---AASRKNNFDIHNLESKALDA-EDRLEEVSLQVE 142 (287)
Q Consensus 106 Ve~L~---~elekqn~~~~~LEsrA~dA-Ekkv~eL~skle 142 (287)
++.|. .++.+.+..++.++.+++.. ..|+.+|...|.
T Consensus 546 ~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~ 586 (713)
T PF05622_consen 546 LEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQ 586 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55543 33444344444444444444 555555555543
No 330
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=64.63 E-value=26 Score=31.52 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
+++--.+|+.++..|.++++.. +.+..++..-..|...|.++|+..++
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~l----e~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRL----EEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567777777777666543 35566777777888888888877553
No 331
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.48 E-value=62 Score=24.75 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
.+.....-+..|...+..+......++.....+.+.+.+...+++.+++..+-.....+
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~ 104 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQ 104 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555556666777777777777777776655444333
No 332
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=64.40 E-value=73 Score=25.56 Aligned_cols=43 Identities=5% Similarity=0.175 Sum_probs=20.7
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEI 106 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQV 106 (287)
+.-+|+..+..+.+...+.....++.+...+-+.+..+|+..+
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l 65 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL 65 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444444433333333
No 333
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.32 E-value=59 Score=35.08 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=12.8
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
+.+...+.|..|-+++.++=+.|..+++.+
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 334
>PRK04325 hypothetical protein; Provisional
Probab=64.27 E-value=43 Score=25.84 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhh
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSK 87 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~s 87 (287)
+...|..|-.|++..|.-|++.+ +.+.+..+.|..+..++..|...+.+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN-------~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLN-------ATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777777777777766 44444444444444444444444433
No 335
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.15 E-value=9.7 Score=34.03 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH
Q 038837 78 IHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDA 130 (287)
Q Consensus 78 I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dA 130 (287)
-+-|++|| +| -..|..+||+|++|+|+.+.++ .+..+..+.
T Consensus 16 nalLE~EL----------dE-KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~ 56 (166)
T PF04880_consen 16 NALLESEL----------DE-KENLREEVQRLKDELRDLKQEL-IVQEKLRKA 56 (166)
T ss_dssp HHHHHHHH----------HH-HHHHHHCH------------------------
T ss_pred hHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 45677776 22 3458889999999999999998 665554433
No 336
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.11 E-value=30 Score=34.47 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=40.9
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALD 129 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~d 129 (287)
|++-+.+...+..++.+.++||+.+-...+=..+|+..++.|..+.-..+.+++.|-++..+
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444445566677788888877665555556777777777777777777777766544333
No 337
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=63.74 E-value=1.4e+02 Score=28.43 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERD 68 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~E 68 (287)
..+..+++++++.+...+..++.....++.+...++..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~ 120 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASAN 120 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888877775544444433333333
No 338
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.63 E-value=84 Score=28.64 Aligned_cols=25 Identities=8% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
...++..+....+.++.+..+|+.+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444
No 339
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.56 E-value=73 Score=30.44 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhh-HHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNK-IHHLQSLLSKIKDDSSRAEERLNALEEEIRL 108 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~k-I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~ 108 (287)
+.|..-=.+|...|...|..-..+..++-.+.+.....-..+.-..++ ++.+++|+.+. ..-.+.++..|+.||+.
T Consensus 16 ~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~---eek~e~~l~~Lq~ql~~ 92 (258)
T PF15397_consen 16 DFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEW---EEKEESKLSKLQQQLEQ 92 (258)
T ss_pred HHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhH
Q 038837 109 LWAASRKNNFDIHNL 123 (287)
Q Consensus 109 L~~elekqn~~~~~L 123 (287)
|.+.+.+-+.+.+.|
T Consensus 93 l~akI~k~~~el~~L 107 (258)
T PF15397_consen 93 LDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHH
No 340
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.50 E-value=1.2e+02 Score=27.52 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038837 153 IQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 153 ~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
..++|+.+.+.-+...+-+++.+
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~ 183 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNE 183 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555555444
No 341
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=62.95 E-value=69 Score=24.77 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 81 LQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 81 LqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
|.|-++.| -.+.+.+-.+.++....|..-.+....+...|-++....-.+|+.|+.+|+.+
T Consensus 8 Ll~ale~L---q~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 8 LLSALEEL---QQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555 22455666777777777777777777777777777777777777777777664
No 342
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.90 E-value=21 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
+++..|+++++.|.+++.+.+.+...++..
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555443
No 343
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=62.82 E-value=44 Score=28.58 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=35.0
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHH---HHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAE---ERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae---e~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+.+.++-..|=.++++|..| |++|..-....+ ++|++|+++.+....+++....+++.+
T Consensus 69 ~~~~elA~dIi~kakqIe~L---IdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 130 (144)
T PF11221_consen 69 ENIKELATDIIRKAKQIEYL---IDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEEL 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666776666 445533222222 348888888888877777666555433
No 344
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=62.75 E-value=19 Score=31.02 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=22.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH
Q 038837 24 NQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER 67 (287)
Q Consensus 24 ~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~ 67 (287)
+|.+....+.++++++++.|...|..+.+...+++.||..|..+
T Consensus 70 ~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~L 113 (131)
T PF04859_consen 70 DPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRL 113 (131)
T ss_pred CCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555556666666665555555444444444444444
No 345
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.73 E-value=25 Score=32.07 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLES 125 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEs 125 (287)
+.+|+++++.|+++++-++..+.++-+
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888777754
No 346
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.72 E-value=36 Score=27.46 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=24.4
Q ss_pred HHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 10 LLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 10 ~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
..+++| ++.|+.=.-+++-..|.++++.|++|+.++++.+..-.
T Consensus 8 ~aviLs-~~LLaGCAs~~kvdqLss~V~~L~~kvdql~~dv~~a~ 51 (85)
T PRK09973 8 GAVVLA-TCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALR 51 (85)
T ss_pred HHHHHH-HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443 35553221123445666777777777777776666543
No 347
>PRK00295 hypothetical protein; Provisional
Probab=62.70 E-value=21 Score=27.10 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038837 34 AELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~ 54 (287)
..|..|-.|++..|.-|++.+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666
No 348
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.62 E-value=1.2e+02 Score=31.89 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 82 QSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 82 qsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
++.|+.|-.....++.+...+..+.+.|.+-++-...++.+++.....+..++..|.-+|+..
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433344555666666666676766666666666666666666666666665555443
No 349
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.56 E-value=1.5e+02 Score=28.92 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH--HHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER--LNALEEEIRLLW 110 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~--i~eLEkQVe~L~ 110 (287)
-.=|+|-.--|.+|...+.|....|..||..|.++.....-|..+- .+-| =-.+|-| ++|--|+|++|+
T Consensus 60 LTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEE-------CHRVEAQLALKEARkEIkQLk 130 (305)
T PF15290_consen 60 LTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEE-------CHRVEAQLALKEARKEIKQLK 130 (305)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3557887888899988877777666666665555543333332220 0000 0013333 699999999999
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 111 AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
..++++++... |.+|- +||-=.+=-+|=+|+|-=|+-
T Consensus 131 QvieTmrssL~-------ekDkG----------iQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 131 QVIETMRSSLA-------EKDKG----------IQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHHHHHHhhhc-------hhhhh----------HHHHHhhhhhhHhHHHHHHHH
Confidence 99999987632 33332 444333334666778877774
No 350
>PRK14148 heat shock protein GrpE; Provisional
Probab=62.51 E-value=1.1e+02 Score=27.97 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK--MSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek--~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
+.+|+.+++.|..+++....+.-.+.+-.....||.+.=-.+..+ .++...+-.-.+-.+|+|+..+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~ 110 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHE 110 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 444444444444444444444333333333334443332222222 3344445555667788888753
No 351
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=62.26 E-value=33 Score=29.40 Aligned_cols=36 Identities=31% Similarity=0.233 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLE 135 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~ 135 (287)
..|++++++....+++....+..||..|...+..+.
T Consensus 44 ~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 44 ELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 352
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.03 E-value=35 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038837 35 ELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e 52 (287)
||-||..|-..|.|.|++
T Consensus 94 EL~ele~krqel~seI~~ 111 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEE 111 (907)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 333333343344444444
No 353
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.93 E-value=63 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
...|.+|++.++++ .-++..-..+....+.+.+....++.+|=....+|..+++-+.+-+.
T Consensus 4 ea~~~~Lr~rLd~~--------------~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 4 EAEIATLRNRLDSL--------------TRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566655544 22333333444444445555555556665666666666655554433
No 354
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=61.92 E-value=1.7e+02 Score=28.81 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh----hhhccchhHHHHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS----KIKDDSSRAEERLNALEE 104 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~----sLkk~s~~aee~i~eLEk 104 (287)
+.-|.-||..||+.|..+..+--+ |....-+.-+++.|+-.+ |+..+- .|.+.-+---.++..|--
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qe-------kE~ky~ediei~Kekn~~---Lqk~lKLneE~ltkTi~qy~~QLn~L~a 70 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQE-------KEKKYLEDIEILKEKNDD---LQKSLKLNEETLTKTIFQYNGQLNVLKA 70 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q 173 (287)
+--.|...+++-..+++.||+....---|+...-.+.+.-+..-.+ +|.||+.+.++-...|
T Consensus 71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrd-------lelafqr~rdEw~~lq 132 (305)
T PF14915_consen 71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRD-------LELAFQRARDEWVRLQ 132 (305)
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH-------HHHHHHHHhhHHHHHH
No 355
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.79 E-value=1.7e+02 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQI 155 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qI 155 (287)
-.|.+.|-.+.+..+.+...+..+.+.+-..|.+++..|..+..-.+..|.+|
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666655544444444333
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.61 E-value=82 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e 52 (287)
+..++++++.++..|-+.+..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~ 24 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQK 24 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666444443
No 357
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.55 E-value=1.1e+02 Score=33.14 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHHHhccchhhhh
Q 038837 218 SQVQHQFKRFFLAFKKF--------H----HELQGFIKQEMVKNKLTAALA 256 (287)
Q Consensus 218 ~~~~~~~k~~l~sA~~y--------H----~qvQ~~I~~~L~~hElt~~lA 256 (287)
..|.....+|+..|..- | -.+...|+++|.+|+..+.|.
T Consensus 715 eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~ 765 (782)
T PRK00409 715 EEALERLDKYLDDALLAGYGEVLIIHGKGTGKLRKGVQEFLKKHPSVKSFR 765 (782)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCCChhHHHHHHHHHHcCCCceeeee
Confidence 55777777888777632 2 248889999999999887663
No 358
>PRK01203 prefoldin subunit alpha; Provisional
Probab=61.26 E-value=1.1e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA 127 (287)
.++++.-|+++++.|.+-+.+.+.....++...
T Consensus 85 ~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~ 117 (130)
T PRK01203 85 RERTIERLKENLEDLKDSIQKLNDQRKTLVDQY 117 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577777777777777777777766666443
No 359
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=61.16 E-value=1.4e+02 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
..+..++++++..+.+++.++....
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~ 100 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLE 100 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777776666655543
No 360
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.99 E-value=77 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 131 EDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 131 Ekkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
+.+...|..+++.++.....-..-|.-+|+++.
T Consensus 71 ~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 71 ENKLKVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444444444444555444
No 361
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=60.91 E-value=1.4e+02 Score=29.71 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
++-.=+..++.+|.+|+..|.+..++...... .-+..+.+....|..|-..|..++..+..+|.-|.++=+-|..|-
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~---~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD 98 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQ---DAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLD 98 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777766554432211 112334444466667777777776666666666666666666664
Q ss_pred HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 111 AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 111 ~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
..=+-.-. .--+=+|++.|..-+++++..
T Consensus 99 ~AKrNLT~--------SIT~LkrL~MLv~a~~qL~~~ 127 (383)
T PF04100_consen 99 NAKRNLTQ--------SITTLKRLQMLVTAVEQLKEL 127 (383)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 32111111 112335555555555555444
No 362
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=60.91 E-value=38 Score=29.77 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=47.9
Q ss_pred HHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 69 KLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 69 k~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
..-+.|+-+-+..+...+-+...... ....++++++.+++.++...+++.||.+|.++|++-+.++-+-..
T Consensus 42 a~YQAKsiK~~l~e~~~~~l~~~~~~----~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~ 112 (157)
T PF14235_consen 42 AYYQAKSIKQHLAELAADLLELELAA----RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHR 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
Confidence 34556666666666665544111100 566777888888888888888999999999998888777655443
No 363
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.88 E-value=34 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA 127 (287)
..+.++.+.|+.+++..+.+-+.+|..|
T Consensus 34 ~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 34 EELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344444444555544433444444443
No 364
>PF14282 FlxA: FlxA-like protein
Probab=60.70 E-value=32 Score=28.10 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHhHHHhhhHHHHHHHHhhhhc-cchhHH---HHHHHHHHHHHHHHHHHhhhhhh
Q 038837 69 KLVDDMTNKIHHLQSLLSKIKD-DSSRAE---ERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 69 k~i~eks~kI~sLqsEi~sLkk-~s~~ae---e~i~eLEkQVe~L~~elekqn~~ 119 (287)
..|.....+|..|+.+|..|.. +..+++ +++..|+.|+..|...|.....+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444677777777777744 344544 33566666666666555544433
No 365
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.46 E-value=37 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e 52 (287)
..++++++.+|..|...++.
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~ 24 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQK 24 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444
No 366
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=60.37 E-value=1e+02 Score=29.70 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 038837 38 DAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 38 qLk~kIa~LES~i~e~~qel~ 58 (287)
.++..+...+..|.+++++..
T Consensus 145 ~~~~~~~ekd~~i~~~~~~~e 165 (264)
T PF07246_consen 145 ELKKEAEEKDQLIKEKTQERE 165 (264)
T ss_pred HHHHHHHHHHHHHHHHhhchh
Confidence 344444444444444444333
No 367
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.35 E-value=1.4e+02 Score=27.69 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=6.7
Q ss_pred cccccchhcccCC
Q 038837 192 EKHLPKLTGMLVP 204 (287)
Q Consensus 192 ~ph~~kv~~~~~p 204 (287)
.||-.+|.-..||
T Consensus 166 ~~~~s~V~li~d~ 178 (276)
T PRK13922 166 SPNTSRVLLLTDP 178 (276)
T ss_pred CCCeeEEEEEEcC
Confidence 3555555555555
No 368
>PHA02414 hypothetical protein
Probab=60.32 E-value=41 Score=28.05 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHH------HHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEER------LNALEEEI 106 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~------i~eLEkQV 106 (287)
-+++-|=++|..||+.|.+ -++-.|-++ ++++ ..++.|..=+.|| |.-...+|++ |.-||+-|
T Consensus 4 ~~in~Lv~~v~~ledKiQ~--Gelt~kgdn-~eL~-------~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQE--GELTDKGDN-KELE-------VAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred hHHHHHHHHHHHHHHHHhc--CccccCCch-HHHH-------HHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 3677788888888888876 455555532 3445 4444455556666 5445566655 56666666
Q ss_pred HHHH
Q 038837 107 RLLW 110 (287)
Q Consensus 107 e~L~ 110 (287)
..|.
T Consensus 74 ~aL~ 77 (111)
T PHA02414 74 SALA 77 (111)
T ss_pred HHHH
Confidence 5553
No 369
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.90 E-value=1.4e+02 Score=27.13 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchh-----------HH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSR-----------AE 96 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~-----------ae 96 (287)
...|+.=+.+++..|......+....- .-...++.+.+....|..+++--..- .+|.-+ .+
T Consensus 26 ~~~l~q~irem~~~l~~ar~~lA~~~a-------~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~ 98 (219)
T TIGR02977 26 EKMIRLIIQEMEDTLVEVRTTSARTIA-------DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQ 98 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 334444445555555444444433221 11223444444444444444443322 444222 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
+++..|+.|++.+...+.+.......|+.+..++..+-..|-.++..
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665555555555555544433
No 370
>PF13514 AAA_27: AAA domain
Probab=59.81 E-value=2.9e+02 Score=30.97 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=13.3
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
..++..+..+......+..++.+++.|
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554
No 371
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=59.75 E-value=44 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~ 138 (287)
+.-+++.+..|.+.+++.+.+...+.++....+..++.+.
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555555544
No 372
>PRK14011 prefoldin subunit alpha; Provisional
Probab=59.74 E-value=1e+02 Score=26.73 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~ 53 (287)
..+|++++..|..|...|+..
T Consensus 9 ~~~l~~~~~qie~L~~si~~L 29 (144)
T PRK14011 9 FMALEVYNQQVQKLQEELSSI 29 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555553
No 373
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=24 Score=29.62 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 95 AEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~el 113 (287)
..+.|.+||.||..|++++
T Consensus 88 l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 88 LTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455777777777777654
No 374
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.61 E-value=2.9e+02 Score=30.92 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 038837 153 IQIQHLEQALHMAEL 167 (287)
Q Consensus 153 ~qIqk~E~Alk~ae~ 167 (287)
.+|+.+++++..+..
T Consensus 784 ~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 784 QLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444554444443
No 375
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.45 E-value=3.1e+02 Score=31.18 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 218 SQVQHQFKRFFLAFKKFHHEL 238 (287)
Q Consensus 218 ~~~~~~~k~~l~sA~~yH~qv 238 (287)
.+..-.|+.-++-.++|-+-+
T Consensus 562 ~~et~dyk~~fa~skayarai 582 (1243)
T KOG0971|consen 562 DPETFDYKIKFAESKAYARAI 582 (1243)
T ss_pred chhhhHHHHHHHHhHHHHHHH
Confidence 344445666666666666554
No 376
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.41 E-value=1.1e+02 Score=28.22 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
..+|++|.+......-......++.+.--..+|++-++|+.++..+.++-..++-..-++
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999888888777777788888888999999999999999988666555444443
No 377
>PRK12705 hypothetical protein; Provisional
Probab=59.21 E-value=1.4e+02 Score=31.07 Aligned_cols=51 Identities=6% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
.++.+.|.++...|..+..+.+.|+.|.+.|...+..+.++..+|.....+
T Consensus 70 ~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 70 QEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555554444444444443333
No 378
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.17 E-value=1.8e+02 Score=28.32 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
|.+||.--+.|...-|...--.+-+|.|.+-|=.|...|.|+|..
T Consensus 114 iReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 114 IRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555444444444444444455667777777777777777744
No 379
>PRK02119 hypothetical protein; Provisional
Probab=59.11 E-value=50 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=26.8
Q ss_pred hhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 116 NNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 116 qn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
.+..+..||.|..=-|+-|++||.-|-.-++..+..+.+++.+-+-++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666666665555555555555555544443
No 380
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.87 E-value=66 Score=31.10 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ 174 (287)
..--+.|.=+...++..+.+....+.+....++++.+++.+|+.+++--.+--.+.++++.-...++.++.+++.
T Consensus 210 ~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 210 YEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 333344445555555666666666666666666666666666666665555555555555555555555555544
No 381
>PRK00736 hypothetical protein; Provisional
Probab=58.84 E-value=58 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038837 34 AELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~ 54 (287)
..|..|-.|++..|.-|++.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln 25 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELS 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666
No 382
>PRK04406 hypothetical protein; Provisional
Probab=58.71 E-value=57 Score=25.32 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=25.6
Q ss_pred hhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 116 NNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 116 qn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
.+..+..||.+..=-|+-|++||.-|-.-++-.+....+++.+-+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554433
No 383
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.62 E-value=40 Score=29.51 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
.+|.+-+.|+..|-.+...++++|.+|-+||..|...+..++.+.+
T Consensus 68 qqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 68 QQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666444555677799999999999988888776533
No 384
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.31 E-value=1.3e+02 Score=30.92 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhhcCchhhH
Q 038837 43 IAGLETMLEESIRKVNGKSNYI 64 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l 64 (287)
+......+++...++....+.+
T Consensus 275 l~~~~~~l~d~~~~l~~~~~~l 296 (563)
T TIGR00634 275 VGNALTEVEEATRELQNYLDEL 296 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3333334444444444433333
No 385
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=58.31 E-value=1.1e+02 Score=25.60 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc----chhHH--HHHHHHHHHHHHHHHH
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD----SSRAE--ERLNALEEEIRLLWAA 112 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~----s~~ae--e~i~eLEkQVe~L~~e 112 (287)
=..|...+|.+|+.-.+ .--+..|.-|+..++.++.+ +...+ .+|.+.+.+|..-..|
T Consensus 22 C~~K~~~Ie~qI~~Ak~----------------~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~e 85 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKA----------------HGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAE 85 (115)
T ss_pred HHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888876221 11236677777777777444 44443 4589999999999999
Q ss_pred HhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 113 SRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 113 lekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
|+.-..++.. ++...-++||.+-..+|+.
T Consensus 86 L~eA~~~G~~--~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 86 LKEAQAKGDS--DKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHhCCH--HHHHHHHHHHHHHHHHHhh
Confidence 9988888776 6777777788887777754
No 386
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=57.78 E-value=97 Score=24.77 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
...|.-++..|..-+.+++.-...|.
T Consensus 54 ~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 54 KDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444443
No 387
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.68 E-value=2.4e+02 Score=29.47 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHhhhHHHHHHHHhhhhccchhHHHHHHHHHHH----------HHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 73 DMTNKIHHLQSLLSKIKDDSSRAEERLNALEEE----------IRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 73 eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQ----------Ve~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
.-..+|+.||.. ..+.|.+|+||+-. +.+|+..+|..+.+++++==.-+|.++.++-|.--+.
T Consensus 328 kQq~~IqdLq~s-------N~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la 400 (527)
T PF15066_consen 328 KQQNRIQDLQCS-------NLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALA 400 (527)
T ss_pred HHHHHHHHhhhc-------cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHH
Confidence 333455555554 56777777776643 3567777777777777765556777777777777666
Q ss_pred HHhhhhHH
Q 038837 143 KMSEIVTE 150 (287)
Q Consensus 143 k~~ki~~E 150 (287)
..+|.-.|
T Consensus 401 ~tqk~LqE 408 (527)
T PF15066_consen 401 NTQKHLQE 408 (527)
T ss_pred HHHHHHHH
Confidence 66665444
No 388
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.60 E-value=1.2e+02 Score=25.88 Aligned_cols=14 Identities=43% Similarity=0.418 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETML 50 (287)
Q Consensus 37 ~qLk~kIa~LES~i 50 (287)
.++..++..+++.+
T Consensus 11 ~~~~a~~~e~e~~~ 24 (136)
T PF04871_consen 11 KQLAAKILELETKL 24 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555554433
No 389
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.54 E-value=97 Score=26.40 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
+.+|++.++.|...+ .+|+..-...++++++|.+++-++
T Consensus 72 ~~eL~er~E~Le~ri-------~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRI-------KTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444433 344444445566666666666543
No 390
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=57.54 E-value=89 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e 52 (287)
.|...++.++.++...+..+..
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~ 25 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQ 25 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4555556666665555544443
No 391
>PRK09458 pspB phage shock protein B; Provisional
Probab=57.54 E-value=32 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e 52 (287)
..-+.++.+|..||+.+|.
T Consensus 49 ~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 49 EKAERMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3345666677777776664
No 392
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=57.49 E-value=91 Score=25.00 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~ 53 (287)
.+..+++.+...+.+|+..+++.
T Consensus 10 ~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00890 10 QLQQQLEALQQQLQKLEAQLTEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555553
No 393
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=57.46 E-value=44 Score=27.63 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhhcCchhhHHHHhHHhHHH
Q 038837 33 IAELQDAKLKIAGL-------ETMLEESIRKVNGKSNYIEERDKLVDDM 74 (287)
Q Consensus 33 ~~eL~qLk~kIa~L-------ES~i~e~~qel~~Kd~~l~e~Ek~i~ek 74 (287)
-+|-+.||..|.+| ...+-..-+++.+.-..-++..-++++.
T Consensus 11 ~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~ 59 (99)
T PF13758_consen 11 EAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEG 59 (99)
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCC
Confidence 36778899998888 3455555666666555555555454443
No 394
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.40 E-value=2.4e+02 Score=29.12 Aligned_cols=129 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHH-------
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEER------- 98 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~------- 98 (287)
++..-|..=+++++..|...-|...+ +.++-+..+|+-....++++|+... ++-+++..+-
T Consensus 241 ~sPeKL~~~leemk~~l~k~k~~~~~-----------l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~ 309 (446)
T KOG4438|consen 241 QSPEKLKEALEEMKDLLQKEKSAMVE-----------LQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKV 309 (446)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q ss_pred -----HHHHHHHHHHHHHHHhhhh----------hhhhhHHhhhHhHHHHHHHHHHHHHHHhhh----------------
Q 038837 99 -----LNALEEEIRLLWAASRKNN----------FDIHNLESKALDAEDRLEEVSLQVEKMSEI---------------- 147 (287)
Q Consensus 99 -----i~eLEkQVe~L~~elekqn----------~~~~~LEsrA~dAEkkv~eL~sklek~~ki---------------- 147 (287)
+.+||+|++....++++.- .-+...++++.+.+++=. -+-...|.+.
T Consensus 310 v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~--E~v~~~md~~~~~~n~V~~kr~a~~~ 387 (446)
T KOG4438|consen 310 VELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKT--ESVKAMMDDNIEKYNVVRQKRNAKVK 387 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHhcccchhhccHHH
Q ss_pred -hHHHHHHHHHHHHHHHHHHHH
Q 038837 148 -VTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 148 -~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
.++--+-|++.|+.+++|.++
T Consensus 388 kie~~~~~ik~~e~~l~~~~~r 409 (446)
T KOG4438|consen 388 KIEEKNEEIKKIELFLEIARGR 409 (446)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
No 395
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=57.29 E-value=81 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
++++.+..+...+.....+...+|.+-...|+.+..++.+++++...+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666666667777777776665544
No 396
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.09 E-value=2.9e+02 Score=30.11 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
.++++....++.-..+.-+....++-.+-.-+.++..+++-+.+.+|--..|-.+++..-+-..
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555556666667777777777777766666666665444333
No 397
>PRK11519 tyrosine kinase; Provisional
Probab=57.01 E-value=2.7e+02 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e 52 (287)
|..++.+++.++...|..+.+
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 398
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.68 E-value=52 Score=28.92 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~L 123 (287)
..++++++.|++++++.+.+.++|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443333
No 399
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=56.62 E-value=87 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCch
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKS 61 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd 61 (287)
..++++...++..|++.+++....+.+..
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45556666666666666666554444444
No 400
>PRK15396 murein lipoprotein; Provisional
Probab=56.08 E-value=52 Score=25.98 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
++..|..||+.|..++.....+...+.+-+..|..--.--|.+++.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666665555555555543
No 401
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=55.09 E-value=53 Score=31.78 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHH
Q 038837 73 DMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAED 132 (287)
Q Consensus 73 eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEk 132 (287)
|+-.++..+..++.+|.......++++.+.+++++.|.+++++.......++....+.++
T Consensus 3 el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555522112234556666667777777777666665555543334333
No 402
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.84 E-value=41 Score=31.53 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHh
Q 038837 40 KLKIAGLETMLEESI 54 (287)
Q Consensus 40 k~kIa~LES~i~e~~ 54 (287)
..+|.+||..++.++
T Consensus 39 ~~r~~~le~~~~~~~ 53 (263)
T PRK10803 39 EDRVTQLERISNAHS 53 (263)
T ss_pred HHHHHHHHHHHHhhh
Confidence 567777776666644
No 403
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=54.84 E-value=1.4e+02 Score=25.81 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
-|..+..-+.+++.|+.-++.++.++..||..
T Consensus 95 ~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 95 LETKIINQPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666667777777777777777777644
No 404
>PF15294 Leu_zip: Leucine zipper
Probab=54.83 E-value=2.1e+02 Score=27.73 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 92 SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 92 s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
..+-+++...|+.-|..=++++=..... |..--.+.|+|+++ +..--+|-++.+-...||..+...|
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~Qeq---L~~aekeLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQ---LSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHHh
Confidence 3344445566666666655555444444 33333456666665 6666666666666666666665543
No 405
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.77 E-value=1.5e+02 Score=31.73 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchh--hHHHHhHHhHHHhhhHHHHHHHHhhh----hccchhHHHHHHH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSN--YIEERDKLVDDMTNKIHHLQSLLSKI----KDDSSRAEERLNA 101 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~--~l~e~Ek~i~eks~kI~sLqsEi~sL----kk~s~~aee~i~e 101 (287)
...-|..+|.+++.++...|..+++-.++-+.-|- .....-..+.+...++..|+.....+ ..++. .+..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP----~v~~ 343 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHP----TYRA 343 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----hHHH
Confidence 34567788899999999988888876554322221 11112223455556666666444333 11111 1455
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
|..|+..|.+++...+.+.. ...+.+..+.+|..+++..+.+=..--.+.+
T Consensus 344 l~~~~~~L~~~~~~l~~~~~----~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 344 LLEKRQTLEQERKRLNKRVS----AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555554433 3456677788887777665555443333333
No 406
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=54.68 E-value=1.8e+02 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~ 53 (287)
..+.+++..+.+.+..++..
T Consensus 55 ~~~~~a~a~l~~a~a~~~~~ 74 (327)
T TIGR02971 55 AELDVARTQLDEAKARLAQV 74 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 407
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.63 E-value=3.5e+02 Score=30.29 Aligned_cols=96 Identities=23% Similarity=0.190 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccch----h--------------------
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSS----R-------------------- 94 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~----~-------------------- 94 (287)
++--|..+.-.|+...|..+.=....++++..+++.-..++.|...++.||..-+ .
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a 741 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNA 741 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHH
Confidence 3444444444444444433333344555555555555555566655555532211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRL 134 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv 134 (287)
+..+.+.|+-+-..|.++++|-+..++++.+.+.+|+-+-
T Consensus 742 ~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~ 781 (970)
T KOG0946|consen 742 ALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQ 781 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc
Confidence 1122567776777777888888888888888888776543
No 408
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=54.51 E-value=1e+02 Score=23.95 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 148 VTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 148 ~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
...++.+..+|=+-|+.+-.+.-++++.
T Consensus 66 ~~~~k~~~~KL~~df~~~l~~fq~~q~~ 93 (102)
T PF14523_consen 66 DRQQKLQREKLSRDFKEALQEFQKAQRR 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666565555555555544
No 409
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.40 E-value=3.1e+02 Score=29.92 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=11.5
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+.+++|.+.+.+...++.+.+.+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~ 539 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEA 539 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544333
No 410
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=54.19 E-value=40 Score=25.50 Aligned_cols=46 Identities=30% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038837 9 LLLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRK 56 (287)
Q Consensus 9 ~~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qe 56 (287)
++++++.+.|++-++. .....+..+++.++.++..+++..++...|
T Consensus 8 l~~~v~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~l~~en~~L~~e 53 (85)
T TIGR02209 8 LLLAILVSAISVVSAQ--HQTRQLNNELQKLQLEIDKLQKEWRDLQLE 53 (85)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553221 112234455555555555555555554433
No 411
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.90 E-value=46 Score=36.53 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------chhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNG-------KSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNAL 102 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~-------Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eL 102 (287)
..++.+|..+......|+.+=.+.+..++. .++.....++..++.+..+..+.+.+..++-.-+-...-+..+
T Consensus 431 ~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~ 510 (847)
T KOG0998|consen 431 LELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSL 510 (847)
T ss_pred ccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHH
Confidence 444677777777777776554433222222 2233333344455555666666666666644433344445555
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
++++..|...+.......+..|++.+...+.+..+..+.
T Consensus 511 ~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~ 549 (847)
T KOG0998|consen 511 EKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEM 549 (847)
T ss_pred HHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHH
Confidence 555555554444444444444444333333333333333
No 412
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=53.66 E-value=17 Score=30.04 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
..|..=|....+.+++..+.+..-...+..-++.|-+-+.+|..|.+++..++..-...+..+.-++.|=..|..-|
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888888888888888999999999999999999999987765544444444444444444444333
No 413
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=52.78 E-value=2.7e+02 Score=30.15 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhh----hhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNFD----IHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAA 170 (287)
Q Consensus 103 EkQVe~L~~elekqn~~----~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~ 170 (287)
+.+++....++..+|.. -+-.+.+-.+||.++.+++-+ ++|-.+..+-.-++..++.|.
T Consensus 595 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~~~---------~~~~~~~~~~~~~~~~e~k~~ 657 (664)
T KOG4568|consen 595 ENEVQFQRAELTLENIRHQLELECQQTKDSEAELRLKELEKQ---------KLVEEIEFLKEQDKQNENKLT 657 (664)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHHHH---------HHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555555433 344567778899999998877 677777777666676666653
No 414
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.55 E-value=1.3e+02 Score=24.75 Aligned_cols=25 Identities=4% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
+.++..|+.++..|..|+......-
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~ 33 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLL 33 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766543
No 415
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=52.46 E-value=2.4e+02 Score=28.39 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=28.5
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAE 166 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae 166 (287)
.++......+|.+-......+..|..++..+...+.+.|.-- +.|.-+++|-
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLa-EaeyLlrlA~ 146 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLA-QADFLVKLAG 146 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH-HHHHHHHHHH
Confidence 333334444455555666666666666666666666666433 4444444443
No 416
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.54 E-value=88 Score=23.95 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~ 53 (287)
.|+..|+.+..|++..++.....
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444433
No 417
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=51.51 E-value=1.9e+02 Score=30.19 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 131 EDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 131 Ekkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
++.++.|..-|+-+.+++.++-.+++++-+||+
T Consensus 139 ~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~ 171 (508)
T PF00901_consen 139 ENQIEILEKALKSYGKIVKEENKQLDRLARALQ 171 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555544
No 418
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=51.25 E-value=68 Score=28.77 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
..++..++...+.+..-.++..|. ....++.+||.++..|.+.++. ...++.+..|.++++.++-.++..+
T Consensus 91 ~~~~ifkegg~d~~k~~~~l~~L~----e~snki~kLe~~~k~L~d~Iv~----~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 91 DLSKIFKEGGGDKQKQLKLLPTLE----EISNKIRKLETEVKKLKDNIVT----EKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHH----HHHHHHHHHHHHHHhHhhhccc----cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666555554545555441 1222788888888888877543 2356777888888888888777664
No 419
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=51.22 E-value=98 Score=26.05 Aligned_cols=64 Identities=30% Similarity=0.369 Sum_probs=41.8
Q ss_pred HHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 73 DMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 73 eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
.|+..|.+|++|++-+|. +..+-.-.+||+==+.--.|++..+ +|..+.+.+.+|+.+.++||-
T Consensus 4 QmElrIkdLeselsk~Kt--sq~d~~~~eLEkYkqly~eElk~r~----SLs~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKT--SQEDSNKTELEKYKQLYLEELKLRK----SLSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHHHhHh--HhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHH
Confidence 456778888999877752 2233334567666555556665544 456667788888888888874
No 420
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=51.03 E-value=95 Score=22.66 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhh----hHhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESK----ALDAEDRLEEVSLQVEKMSEIVTEQWIQ 154 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsr----A~dAEkkv~eL~sklek~~ki~~EQ~~q 154 (287)
..+++.++......++..+..+..|.+. +....+++..|+..-+.+.....+.+.+
T Consensus 43 ~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 43 HKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555322 3445555666666656555555554443
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.94 E-value=3.5e+02 Score=29.15 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHhHHhHHHhhhHHHHHHHHhhh-------hccchhHHHH----HHHHHHHHHHHHHHHhhhhhhhhh-------HH-hh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSKI-------KDDSSRAEER----LNALEEEIRLLWAASRKNNFDIHN-------LE-SK 126 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~sL-------kk~s~~aee~----i~eLEkQVe~L~~elekqn~~~~~-------LE-sr 126 (287)
.+++.+.|.+.+-.+|++-...| ++.+++||.. +.-+-+|++-|++.+|+....... .. +.
T Consensus 620 ~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al 699 (741)
T KOG4460|consen 620 RLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSAL 699 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666666666666544 3335666633 445556777777666654332221 11 00
Q ss_pred h----HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 127 A----LDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 127 A----~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
- ..-++.-..+.+=|.++...+.+|-+++...+-++
T Consensus 700 ~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 700 PKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 01133445566666677777777777776666654
No 422
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.78 E-value=97 Score=27.03 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERD 68 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~E 68 (287)
.+.++..+++.++.....|+.++..|+.+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk 47 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLK 47 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333444444443
No 423
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=50.65 E-value=30 Score=36.77 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
....+...|..||-.+..+-++|..++..+.++.+.+......|+.|++|++.+
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~ 71 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKL 71 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 346788889999999999999999999999999999999999999999998855
No 424
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=50.38 E-value=19 Score=31.39 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhH
Q 038837 16 WSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRA 95 (287)
Q Consensus 16 ~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~a 95 (287)
.+--.+||+ ..|+.||..||...+-.=|....-.+.|.+ .-+....+|.+|+++++.-+..-.+
T Consensus 49 ~IcVigsQ~-----~qlq~dl~tLretfsNFssst~aEvqaL~S----------~G~sl~~kVtSLea~lEkqqQeLkA- 112 (138)
T PF03954_consen 49 VICVIGSQN-----SQLQRDLRTLRETFSNFSSSTLAEVQALSS----------QGGSLQDKVTSLEAKLEKQQQELKA- 112 (138)
T ss_pred HHHhhcCcc-----HHHHHHHHHHHHHHhcccHHHHHHHHHHHh----------ccccHHhHcccHHHHHHHHHHHHhh-
Confidence 333457776 446667777777666554333332333333 3334456666777766544222111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 038837 96 EERLNALEEEIRLLWAASRKNN 117 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn 117 (287)
--.+|--.|+.+-+|+|..+
T Consensus 113 --dhS~lllhvk~~~~DLr~Ls 132 (138)
T PF03954_consen 113 --DHSTLLLHVKQFPKDLRSLS 132 (138)
T ss_pred --hHHHHHHHHHHHHHHHhhhh
Confidence 11334456666777776544
No 425
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.20 E-value=37 Score=25.64 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038837 37 QDAKLKIAGLETMLEESI 54 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~ 54 (287)
++++.++.++|..+++..
T Consensus 2 ~~i~e~l~~ie~~l~~~~ 19 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHE 19 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666543
No 426
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.20 E-value=3.2e+02 Score=28.46 Aligned_cols=212 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhH-HHhhhHHHHHHHHhhh-hccchhHH-------
Q 038837 26 QHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVD-DMTNKIHHLQSLLSKI-KDDSSRAE------- 96 (287)
Q Consensus 26 ~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~-eks~kI~sLqsEi~sL-kk~s~~ae------- 96 (287)
++.+.+|+.|++-++.|-..+.-.=--.-+.--.=--.-++-|..|. -.-++|+.|.-|-+++ ..-...-|
T Consensus 56 sq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Ls 135 (552)
T KOG2129|consen 56 SQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLS 135 (552)
T ss_pred HhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchh
Q ss_pred -------------HHHHHHHH--HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHH
Q 038837 97 -------------ERLNALEE--EIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI-VTEQWIQIQHLEQ 160 (287)
Q Consensus 97 -------------e~i~eLEk--QVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki-~~EQ~~qIqk~E~ 160 (287)
|+.-+.|. +|.+|-+-+||...+...=..-.+..-.--=+|-..+|+=|.. +.--|++++|+|+
T Consensus 136 rkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 136 RKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHhhcccccchhcccCCcccCCcccccchHHH---HHHHHHHHHHHHHHHHHH
Q 038837 161 ALHMAELRAANVQRQLMYARCTFLKFVKDFSEKHLPKLTGMLVPYLPGKGSILISFMSQ---VQHQFKRFFLAFKKFHHE 237 (287)
Q Consensus 161 Alk~ae~~~~k~q~ea~p~~~~f~k~~~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~---~~~~~k~~l~sA~~yH~q 237 (287)
--.+-...+ -|--.+|+. .||+..-|-+..+++..- +-+|.. -+.-||.-+.+|..-|..
T Consensus 216 ekr~Lq~Kl--Dqpvs~p~~------prdia~~~~~~gD~a~~~---------~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 216 EKRYLQKKL--DQPVSTPSL------PRDIAKIPDVHGDEAAAE---------KLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHh--cCcccCCCc------hhhhhcCccccCchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------HHHHHHHHHHhccchhh
Q 038837 238 ------------------LQGFIKQEMVKNKLTAA 254 (287)
Q Consensus 238 ------------------vQ~~I~~~L~~hElt~~ 254 (287)
+|.-++..|++.|-++.
T Consensus 279 k~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr 313 (552)
T KOG2129|consen 279 KLMQYRAEEVDHREENERLQRKLINELERREALCR 313 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=50.14 E-value=1.4e+02 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
.+.+.++..|..++...+.++..++
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444
No 428
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=50.13 E-value=68 Score=23.79 Aligned_cols=49 Identities=31% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHh--------------HHHHHHHHHHHHHHHhhhhHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALD--------------AEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~d--------------AEkkv~eL~sklek~~ki~~E 150 (287)
+++++.+|.+++.+.+.++..++.+.+. -..+++++..++++++.....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 429
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=50.08 E-value=1.3e+02 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=17.0
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
.--|.+-++++.-|-.|+..+-..
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~ 118 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQ 118 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888887666333
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.98 E-value=3.7e+02 Score=29.34 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccchhhhhh
Q 038837 218 SQVQHQFKRFFLAFKKFH------------HELQGFIKQEMVKNKLTAALAN 257 (287)
Q Consensus 218 ~~~~~~~k~~l~sA~~yH------------~qvQ~~I~~~L~~hElt~~lAt 257 (287)
..|.....+|+..|...+ -.+...|+++|.+|++.+.|..
T Consensus 704 ~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~ 755 (771)
T TIGR01069 704 EEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKVKSFRD 755 (771)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcceeeecc
Confidence 567778888888877665 3489999999999999887743
No 431
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.91 E-value=45 Score=36.63 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.++++...++..+.......++....--++.++-..+.+.+..+.....+++++
T Consensus 457 k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~ 510 (847)
T KOG0998|consen 457 KLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSL 510 (847)
T ss_pred hhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHH
Confidence 456666666666666666666666666666666666655555555555555444
No 432
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=49.81 E-value=3.1e+02 Score=28.17 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhh----HhHHHHHHHHHH---H-----------HHHHhhhhHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKA----LDAEDRLEEVSL---Q-----------VEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA----~dAEkkv~eL~s---k-----------lek~~ki~~EQ~~qIqk~E~ 160 (287)
..++..+++.++.+.+.+..+..-+..|| .+.||+++.|-. . ++.+..-.+-..-.|+.++.
T Consensus 216 ~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~ 295 (511)
T PF09787_consen 216 SGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLER 295 (511)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHH
Confidence 68889999999999998888777666554 466788887776 2 34443344455566677777
Q ss_pred HHHHHHHHHHHH
Q 038837 161 ALHMAELRAANV 172 (287)
Q Consensus 161 Alk~ae~~~~k~ 172 (287)
-++...+++.-.
T Consensus 296 Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 296 QIEQLRAELQDL 307 (511)
T ss_pred HHHHHHHHHHHH
Confidence 665444444333
No 433
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.77 E-value=2.3e+02 Score=29.27 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e 52 (287)
..+.+|+-++++-|+.-++
T Consensus 13 qr~~~~~~~laq~~k~~s~ 31 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSR 31 (459)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444
No 434
>PRK00846 hypothetical protein; Provisional
Probab=49.23 E-value=65 Score=25.42 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=41.8
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
..+..+..||.|..=.|+-+++||.-|-.-++..+..+.+++.+=..|+-++...
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456677788888888888888888888888888888888887777776655443
No 435
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.19 E-value=2.1e+02 Score=30.86 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhh---hhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKN---NFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 99 i~eLEkQVe~L~~elekq---n~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
+.+|-.|++.|-.++--. +... +=+--...-+++++++.+|..+++.-..-..++..+.++++
T Consensus 126 f~el~~qie~l~~~l~g~~~~~~~~--~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~ 191 (660)
T KOG4302|consen 126 FKELYHQIEKLCEELGGPEDLPSFL--IADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIK 191 (660)
T ss_pred HHHHHHHHHHHHHHhcCCccCCccc--ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777666544 1110 00111233488999999999888887777777777777666
No 436
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=49.19 E-value=73 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=19.4
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
..+.+.|....+...++.+|+.-+..++..
T Consensus 99 ~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~ 128 (390)
T PRK10920 99 KALDQANRQQAALAKQLDELQQKVATISGS 128 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 335555666777777777777777766433
No 437
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=49.18 E-value=85 Score=29.79 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNK 77 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~k 77 (287)
.+.||.+|.......+ +.|..+|..|.+-..+
T Consensus 178 a~eki~~Lr~~y~~l~-------~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 178 AREKIAALRQRYNQLS-------NSIAYLEAEVAEQEAQ 209 (259)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4455555555554444 4444455444444444
No 438
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.07 E-value=36 Score=32.51 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhccchhh
Q 038837 233 KFHHELQGFIKQEMVKNKLTAA 254 (287)
Q Consensus 233 ~yH~qvQ~~I~~~L~~hElt~~ 254 (287)
.=|..+.++.+....+++=+.+
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCHH
Confidence 3466677777777777776653
No 439
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.45 E-value=1.3e+02 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 038837 257 NEELVFFVASALITFPILAAWVLLSSQFSK 286 (287)
Q Consensus 257 tkeLvWflAsALlalP~~~~~~llss~F~~ 286 (287)
|.+-.|.-|.+.+---+=..--.+|+.|.+
T Consensus 417 N~De~WTrALkFmLTnlK~~~A~vss~~~~ 446 (447)
T KOG2751|consen 417 NSDENWTRALKFMLTNLKWLLAWVSSLFSK 446 (447)
T ss_pred cchHHHHHHHHHHHhccHHHHHHHhhhhcC
Confidence 556679888866554444444445666654
No 440
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=48.18 E-value=1.3e+02 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKI 78 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI 78 (287)
|..+|.|++.||=-..=|-+++-..+ =.+.|++.|..+..+.+++
T Consensus 20 ns~lr~eiealkY~N~yL~~~~v~~~-----g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 20 NSELRKEIEALKYMNDYLFDQFVRDN-----GYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-----CcchHHHHHHHHHHHHHHh
Confidence 45677777777766666644443322 2355666666666665554
No 441
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.07 E-value=1.9e+02 Score=27.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=50.2
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
+.|..-||.-+-|-+.-..-|+--+.=|.....-|..|++|+++-++|..+-+-.+...++|=.+-++..-.+++++..|
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555556555555544444444333333355556667777777777777766666666666666666666666666666
Q ss_pred HHH
Q 038837 142 EKM 144 (287)
Q Consensus 142 ek~ 144 (287)
..+
T Consensus 142 ~~~ 144 (292)
T KOG4005|consen 142 AEL 144 (292)
T ss_pred Hhh
Confidence 543
No 442
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=47.88 E-value=1e+02 Score=26.30 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=42.5
Q ss_pred HHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 109 LWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
|+.|=.....+...+|..=.+-..|+..|--+....+.++.++.++|.-||.||+.
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555665566677788888888888999999999999999999995
No 443
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.81 E-value=1.3e+02 Score=27.26 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIR 55 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~q 55 (287)
.++..|..+|.....+-+-||.+++---+
T Consensus 57 ~q~~dl~~qL~aAEtRCslLEKQLeyMRk 85 (178)
T PF14073_consen 57 KQNQDLSSQLSAAETRCSLLEKQLEYMRK 85 (178)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999887553
No 444
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.70 E-value=1.8e+02 Score=32.04 Aligned_cols=85 Identities=22% Similarity=0.242 Sum_probs=62.6
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
..+.+.+..-.+++-.|..++..+-+....+.+.-.-...||.++..=-.+++.+..+..+|.-+...+|+++..-.. .
T Consensus 56 ~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-a 134 (916)
T KOG0249|consen 56 RDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-A 134 (916)
T ss_pred hhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-h
Confidence 345556677778889999999999888666666666677788888888888888888888888888888887654333 4
Q ss_pred HHHhhh
Q 038837 142 EKMSEI 147 (287)
Q Consensus 142 ek~~ki 147 (287)
+++...
T Consensus 135 e~lpev 140 (916)
T KOG0249|consen 135 ETLPEV 140 (916)
T ss_pred hhhhhh
Confidence 443333
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.69 E-value=2.9e+02 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=8.7
Q ss_pred HHhHHhHHHhhhHHHHHHHH
Q 038837 66 ERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi 85 (287)
+.+++|.+.+.+...++.+.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~ 531 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKN 531 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 446
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.63 E-value=86 Score=25.57 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e 52 (287)
..+...++....++..+|..++.
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666655
No 447
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=47.61 E-value=1.1e+02 Score=32.58 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
++.+++.|+..+......++.+.. ..+..+...+.++..++..++.-..+.-.+++.+++.++
T Consensus 347 ~~~~~~~~l~~~~~~~~~~~~e~~---~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 347 KVDRLDQELVQRQQANDAQTAELR---VKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555432 234455555566666666666655555555555555543
No 448
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.58 E-value=1.3e+02 Score=23.87 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHH---HHHHHHHHHhhhhhh
Q 038837 43 IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEE---EIRLLWAASRKNNFD 119 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEk---QVe~L~~elekqn~~ 119 (287)
|..+-..-+.-.+.+..|- .....=..|-+...+--.++.+++.|...--..-++|+.+-+ .++.|..+......+
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Q ss_pred hhhHHhhhHhHHHHHHHH
Q 038837 120 IHNLESKALDAEDRLEEV 137 (287)
Q Consensus 120 ~~~LEsrA~dAEkkv~eL 137 (287)
+..+|.....++.++..+
T Consensus 83 i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 83 IKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 449
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=47.29 E-value=1.5e+02 Score=23.74 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038837 78 IHHLQSLL 85 (287)
Q Consensus 78 I~sLqsEi 85 (287)
+.+|.+|.
T Consensus 54 ~d~l~~e~ 61 (96)
T PF08647_consen 54 KDALDNEM 61 (96)
T ss_pred HHHHHHHH
Confidence 33333333
No 450
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=47.27 E-value=1.7e+02 Score=24.55 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=54.2
Q ss_pred HHhHHHhhhHHHHHHHHhh-hhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 69 KLVDDMTNKIHHLQSLLSK-IKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 69 k~i~eks~kI~sLqsEi~s-Lkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+.-.+....+.++-+-+.. |..|...+=.+-+.||+|...|.....+-++....|...+......|.+++ .|+. |
T Consensus 18 ~~r~ea~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiG-DveN---W 93 (121)
T PF06320_consen 18 RARKEAIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIG-DVEN---W 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cHHH---H
Confidence 3333344444444444332 255555555666778888888887777777777777666666666666652 3333 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 038837 148 VTEQWIQIQHLEQALHMAELRAA 170 (287)
Q Consensus 148 ~~EQ~~qIqk~E~Alk~ae~~~~ 170 (287)
..---.-++.++.+|..+.....
T Consensus 94 a~~iE~Dl~~i~~~L~~v~~~~~ 116 (121)
T PF06320_consen 94 AEMIERDLRVIEETLRYVYEGSE 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 22222334555666665555433
No 451
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=1.6e+02 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e 52 (287)
..++...+.+++..|...|+.
T Consensus 21 ~iN~Fsrl~~R~~~lk~dik~ 41 (131)
T KOG1760|consen 21 NINEFSRLNSRKDDLKADIKE 41 (131)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 344555555555555555544
No 452
>PRK10698 phage shock protein PspA; Provisional
Probab=46.91 E-value=2.3e+02 Score=25.96 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
++++..|+.|++.....+.+...+...|+++..+++.|-..|-.+...
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777777777777777666666555533
No 453
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.85 E-value=4.2e+02 Score=28.95 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHH---HHHHHHHHHHHH
Q 038837 144 MSEIVTEQWIQIQ---HLEQALHMAELR 168 (287)
Q Consensus 144 ~~ki~~EQ~~qIq---k~E~Alk~ae~~ 168 (287)
++.+|-.+..+|| .+|+|+.--.++
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee 266 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREE 266 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555 455666544444
No 454
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=46.84 E-value=14 Score=31.73 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 43 IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.+.|.+.+.++--.++..+-.+++++..++.|...|..|..+++.+
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777777777777777776655
No 455
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=46.50 E-value=3e+02 Score=27.13 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHH----HHH
Q 038837 25 QQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAE----ERL 99 (287)
Q Consensus 25 ~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~ae----e~i 99 (287)
|...+..|..-|.+.|.+.-.|.-.+++..|++ ..+.+.-++.+++ |+..+.+-..+ ..+.++.. .++
T Consensus 63 ~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl----~E~qGD~KlLR~~---la~~r~~~~~~~~~~~~~ere~lV~qL 135 (319)
T PF09789_consen 63 PEKENKNLAQLLSESREQNKKLKEEVEELRQKL----NEAQGDIKLLREK---LARQRVGDEGIGARHFPHEREDLVEQL 135 (319)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHH---HHhhhhhhccccccccchHHHHHHHHH
Confidence 334556777788888888888888887766443 3344444444443 33344444333 22222222 225
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL---HMAELRAANVQRQL 176 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al---k~ae~~~~k~q~ea 176 (287)
..+.++.+.|..|+...--+++-+-..-..-..|++-||.+|..+=.-.+ .+|-+++--+ +.-.+++..++.|.
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~---~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDE---NRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888887777777778899999999976432211 1222222110 11223344445555
Q ss_pred hchhhHHHHHHHHh
Q 038837 177 MYARCTFLKFVKDF 190 (287)
Q Consensus 177 ~p~~~~f~k~~~~~ 190 (287)
.-+.++..||-+..
T Consensus 213 ~l~k~~i~KYK~~l 226 (319)
T PF09789_consen 213 ELLKQTINKYKSAL 226 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777787777554
No 456
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=46.34 E-value=99 Score=25.79 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q 038837 132 DRLEEVSLQVEKMS 145 (287)
Q Consensus 132 kkv~eL~sklek~~ 145 (287)
+.+...|.+|++|+
T Consensus 88 ~~L~~inkRLD~~E 101 (102)
T PF01519_consen 88 KTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc
Confidence 44444555555543
No 457
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=46.21 E-value=3e+02 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e 52 (287)
.....+.+-.|..+|+.||+.|--
T Consensus 204 ~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 204 KSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Confidence 334446667777777777776654
No 458
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.98 E-value=57 Score=25.60 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 38 DAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 38 qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+|..+|..||+.+.-..+.+.+=.+.+.+..+.|.-+..+...|-+.+-++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666555544444444777777777777777777776666544
No 459
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.94 E-value=1.8e+02 Score=28.93 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 038837 99 LNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~ 119 (287)
+.++-.+...+..+++....+
T Consensus 296 V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444443333
No 460
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.87 E-value=1.3e+02 Score=27.56 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH-------HhhhhHHHHHHHHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK-------MSEIVTEQWIQIQH 157 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek-------~~ki~~EQ~~qIqk 157 (287)
.|++|..||.+.+.+-+.++.|....-.++-+....+.++..|--||++ -+|+-+|-+.-||+
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~ 153 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQK 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 4566666666666666666655544444444444444444444444444 45556666655553
No 461
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=45.82 E-value=84 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCch-hhHHHHhHHhHHHhhhHHHHHHH
Q 038837 39 AKLKIAGLETMLEESIRKVNGKS-NYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd-~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
....|.+|.|++..-..-|.+.. ..=+.++=+++||-..|.++=|.
T Consensus 13 I~EEl~RL~sH~~~f~~~l~~~~~~vGrkLdFl~QEm~RE~NTigSK 59 (87)
T PF08340_consen 13 ISEELVRLKSHLKQFRELLESEGEPVGRKLDFLLQEMNREINTIGSK 59 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhccHHHHHHHh
Confidence 34455555555555555554444 44455667777777776666655
No 462
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=45.60 E-value=20 Score=26.61 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 038837 27 HSQQHLIAELQDAKLKIAGLETM 49 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~ 49 (287)
-+.+.+++.+++|+..|+.||++
T Consensus 31 ~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 31 AEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred ccchHHHHHHHHHHHHHHHHhcC
Confidence 45578999999999999999963
No 463
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.39 E-value=1.5e+02 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=36.5
Q ss_pred hhhhhhhHHhhhHhHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 116 NNFDIHNLESKALDAEDRLEEVSLQVEK---MSEIVTEQWIQIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 116 qn~~~~~LEsrA~dAEkkv~eL~sklek---~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ 174 (287)
.+.+..-++..+..-..|++..-+-|.. |....+||-.+|+.+|+-+..-.+.+.+-+.
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555 5555788888899888877766666555544
No 464
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=45.36 E-value=7 Score=41.57 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHHHHHhhhhcc--------chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 71 VDDMTNKIHHLQSLLSKIKDD--------SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~--------s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
..|++.++..+++++..++.. +......+.++|.+++.+..+++..+.+.+.|..+.++.+.+.+.|....+
T Consensus 33 ~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~ 112 (759)
T PF01496_consen 33 CDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIE 112 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544111 111222466777777777777777777777777777777777777666665
Q ss_pred HHhh
Q 038837 143 KMSE 146 (287)
Q Consensus 143 k~~k 146 (287)
.++.
T Consensus 113 ~l~~ 116 (759)
T PF01496_consen 113 FLEE 116 (759)
T ss_dssp ----
T ss_pred HHHh
Confidence 5555
No 465
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=45.33 E-value=3.1e+02 Score=27.19 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
..|+.++.++.+.+++-...++.+|.- .-.|=+. +..|.|.+||.+.+.|.-++..
T Consensus 154 erL~~e~~~~~~qlE~~v~~K~~~E~~--L~~KF~~-----------vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 154 ERLESEANKLLKQLEKFVNAKEEHEED--LYAKFVL-----------VLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----------HHHhHHHHHHHHHHHHHHhhcc
Confidence 344445555555555555555544421 1122222 3445688888888888777764
No 466
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.33 E-value=1.6e+02 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER 67 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~ 67 (287)
+..|||-+..+|++..-.++..+..|.+....=+..
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R 38 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEAR 38 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHH
Confidence 347888888888888888888888877765544333
No 467
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=45.27 E-value=1e+02 Score=30.63 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=43.7
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhcc----chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDD----SSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~----s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
|.....++......|..|..+|.....+ +.++.+.+.+.. ..+.....++..+..+|..+|.-|.+++.
T Consensus 20 L~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~-------~~i~~L~~~i~~ik~kA~~sE~~V~~it~ 92 (383)
T PF04100_consen 20 LSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQ-------EAIQELFEKISEIKSKAEESEQMVQEITR 92 (383)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544211 122233333333 34444455556677789999999999999
Q ss_pred HHHHHh
Q 038837 140 QVEKMS 145 (287)
Q Consensus 140 klek~~ 145 (287)
...++.
T Consensus 93 dIk~LD 98 (383)
T PF04100_consen 93 DIKQLD 98 (383)
T ss_pred HHHHHH
Confidence 987754
No 468
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.85 E-value=1.3e+02 Score=29.38 Aligned_cols=87 Identities=17% Similarity=0.349 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCchhhHHHH------hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI-RKVNGKSNYIEER------DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNAL 102 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~-qel~~Kd~~l~e~------Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eL 102 (287)
-+||..|-+-..++..=|+.|++.. |=-+=+++-|+|- .--..|.-+.|..|...|+..+.+-.+.
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek------- 143 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK------- 143 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-------
Confidence 4566666555555555566665532 2223355555543 4456677788999999999887665544
Q ss_pred HHHHHHHHHHHhhhhhhhhhH
Q 038837 103 EEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~L 123 (287)
.|=||+---|+-.||.+.++|
T Consensus 144 DkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 144 DKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred hhhHHHHHhhhhhhHhHHHHH
Confidence 456778888888888886665
No 469
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=44.80 E-value=3.5e+02 Score=28.98 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q 038837 129 DAEDRLEEVSLQVEK 143 (287)
Q Consensus 129 dAEkkv~eL~sklek 143 (287)
.++.++.+++..++.
T Consensus 481 ~~~~e~~e~~~al~e 495 (607)
T KOG0240|consen 481 AAKDEVKEVLTALEE 495 (607)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 470
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.65 E-value=2.3e+02 Score=25.34 Aligned_cols=39 Identities=31% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
..+++.++..|..+.+........++.+...++++.++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555544
No 471
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.61 E-value=2.8e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
||.........+..|..++++++.-|..-.-|||
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666777777777776666655
No 472
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.54 E-value=88 Score=35.53 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhccc
Q 038837 9 LLLVILFWSFTLTS 22 (287)
Q Consensus 9 ~~~~~~~~~~~~~s 22 (287)
+|-+.+-+--||+.
T Consensus 112 lf~l~~Wf~~~Y~~ 125 (1123)
T PRK11448 112 AFRLAVWFHRTYGK 125 (1123)
T ss_pred HHHHHHHHHHHcCC
Confidence 55555555666655
No 473
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.42 E-value=1.5e+02 Score=22.91 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+.+..+++|++.+.+++.+.-.+...+
T Consensus 33 ~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 335555556666665555555554444
No 474
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.06 E-value=3.3e+02 Score=26.87 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-Cchh------hHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVN-GKSN------YIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEI 106 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~-~Kd~------~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQV 106 (287)
.-.+||+.+-.+|+....+...+.. .-|. .-..+-.++.+.-.....|..|++.| -.++.|++..+
T Consensus 30 lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~L-------rqkl~E~qGD~ 102 (319)
T PF09789_consen 30 LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEEL-------RQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhchH
Confidence 3345555555555555544442211 1111 22333445555555666677777666 33467777777
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQL 176 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea 176 (287)
..|...+.+++.....+.++-.- ..=+.|=.++|++ +.+++++|+=++-.-++...+..|-
T Consensus 103 KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~-------~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 103 KLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKL-------REQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666555322 1112232333333 6678888888887777766665553
No 475
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=43.96 E-value=78 Score=30.62 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038837 37 QDAKLKIAGLETMLEESIR 55 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~q 55 (287)
.+||.++..+-..+.....
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4566666666555555443
No 476
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=43.81 E-value=3.8e+02 Score=27.53 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
+-|..+-+.+.=-+.|. ..|..+|..+..+..--+.++.+.|+.|+.-.+.-.+.+.+
T Consensus 330 e~Rt~RPnvELCrD~AQ------~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~d 387 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQ------YRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERD 387 (421)
T ss_pred HHcccCCchHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 35677777777777777777777777777766665555444
No 477
>PF14992 TMCO5: TMCO5 family
Probab=43.68 E-value=3.2e+02 Score=26.58 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~ 58 (287)
++.+-.-+++-...|.+||+.|.....-++
T Consensus 20 Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~ 49 (280)
T PF14992_consen 20 NQSLLQKIQEKEGAIQSLEREITKMDHIAD 49 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 355666677777888888888766444333
No 478
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.50 E-value=79 Score=23.57 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 128 LDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 128 ~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
.+-|.++..+.+.++.+++-+.+-+..|+++++-.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544
No 479
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=43.47 E-value=2.8e+02 Score=27.46 Aligned_cols=11 Identities=18% Similarity=-0.127 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 038837 36 LQDAKLKIAGL 46 (287)
Q Consensus 36 L~qLk~kIa~L 46 (287)
=..|+.+|.+-
T Consensus 125 r~~lk~RI~rS 135 (323)
T PF08537_consen 125 RRLLKDRILRS 135 (323)
T ss_pred HHHHHHHHHHH
Confidence 35667777654
No 480
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.47 E-value=4.4e+02 Score=28.18 Aligned_cols=19 Identities=5% Similarity=0.073 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 150 EQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 150 EQ~~qIqk~E~Alk~ae~~ 168 (287)
++-.+.+.++|-..+++..
T Consensus 367 ~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444666677766666653
No 481
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=43.17 E-value=25 Score=36.37 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
+||.+|++|++.|++++..++.+..
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc
Confidence 3577777777777776664444433
No 482
>PRK14153 heat shock protein GrpE; Provisional
Probab=42.99 E-value=2.6e+02 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 038837 145 SEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 145 ~ki~~EQ~~qIqk~E~Alk~a 165 (287)
++...+----+-.+|+|+..+
T Consensus 83 ~~~~~~LLpv~DnLerAl~~~ 103 (194)
T PRK14153 83 EQVLLDLLEVTDNFERALESA 103 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhcc
Confidence 344445555666778888754
No 483
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=42.94 E-value=6.1e+02 Score=29.71 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhH------HHhhhHHHHHHHHhhh---hccchhHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVD------DMTNKIHHLQSLLSKI---KDDSSRAEERLNAL 102 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~------eks~kI~sLqsEi~sL---kk~s~~aee~i~eL 102 (287)
++.+++....-|..+++..+..+..|...+..-...+..+. ....++...+.+++-+ -.+++|.--.+.|+
T Consensus 745 ~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~ 824 (1294)
T KOG0962|consen 745 LEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDEL 824 (1294)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 44566666666666666666666666665555444433322 2223344444444433 22235555567777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYARCT 182 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~~~ 182 (287)
.+|.+++....++.+++++.+...- .+-.-...+++....+++..-.+++++|.-.+ |.+ -..|.
T Consensus 825 ~~Ek~~~~~~~~~~rke~E~~~k~~-------~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~------qle--~~~~~ 889 (1294)
T KOG0962|consen 825 RKEKSKKQESLDKLRKEIECLQKEV-------IEQEREISRLINLRNELKEEKQKIERSLARLQ------QLE--EDIEE 889 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH--HHHHH
Confidence 7777777777777777666444333 33333333444444444444444444443211 000 00111
Q ss_pred HHHHHHHhhcccccchhcccCCcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 038837 183 FLKFVKDFSEKHLPKLTGMLVPYLPGKGSILISFMSQVQHQFKRFFLAFKKFHHELQGFIKQEMVKNKLTAA 254 (287)
Q Consensus 183 f~k~~~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~~~~~~k~~l~sA~~yH~qvQ~~I~~~L~~hElt~~ 254 (287)
.-..+..... -+..+.+...| .++-...+...|-........+-.-+|..+.+.-+.+.+...
T Consensus 890 l~e~~~~~~s-~~~e~~~~~~~--------~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 890 LSEEITRLDS-KVKELLERIQP--------LKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHH-HHHhhHhhhcc--------hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111100 01111222223 345556666666666666656666666666666666665544
No 484
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.68 E-value=93 Score=24.29 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=26.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHH
Q 038837 25 QQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQ 82 (287)
Q Consensus 25 ~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLq 82 (287)
|......+-...+.||.|+....+.|.+ +-+=+..+++-+..|++....|....
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~----lpgi~~s~eeq~~~i~~Le~~i~~k~ 72 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRE----LPGIDRSVEEQEEEIEELEEQIRKKR 72 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444556666666666666655554 22333334444444444444433333
No 485
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=42.62 E-value=98 Score=24.96 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
++..|..||+.|+..+.....+...+-+-|..|...-..-|.+++.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 67777777777777777777777777776666666666667666654
No 486
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.32 E-value=3e+02 Score=26.00 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAAN 171 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k 171 (287)
....++|-++.+.++.+.......+.++++..|.+-+.|+..-+-
T Consensus 107 ~~~~~~K~~e~~~ql~ke~a~~~~nrk~~~~~E~~nrka~~~~~~ 151 (233)
T KOG4739|consen 107 TAYFEKKTQEETQQLSKEEAFIENNRKKLQASELENRKAERLISA 151 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 558899999999999999999999999999999999887776443
No 487
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=42.21 E-value=48 Score=28.24 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=28.1
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHH
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAA 112 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~e 112 (287)
-.||..+|+.|++|.-..+.-.-|--..|++||..+.....-
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888887666555555666677777765554433
No 488
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.15 E-value=1.9e+02 Score=23.52 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhh------------------------------
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDI------------------------------ 120 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~------------------------------ 120 (287)
++.....+..|+.+++.|...-......+.+++.=.+.|..--.+...+.
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 121 -HNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 121 -~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
.+++.-..-.++|+..|+..++++++...+-..++..++..++
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=42.12 E-value=87 Score=32.80 Aligned_cols=80 Identities=8% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHH
Q 038837 52 ESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAE 131 (287)
Q Consensus 52 e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAE 131 (287)
+..++++.....++++|+.|.+.+.+|..|+.++.....-.-+..+++.++-++.+.++.+++..-.+=..|+....+++
T Consensus 553 ~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 553 ELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>COG1422 Predicted membrane protein [Function unknown]
Probab=42.10 E-value=2.6e+02 Score=25.96 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038837 78 IHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQH 157 (287)
Q Consensus 78 I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk 157 (287)
++.+.+-+.++-..-.-+.|+.++++|+.+.++++-|+-.+.++ +++++.|+++=.++.+...|
T Consensus 53 ~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d---------~~~lkkLq~~qmem~~~Q~e------- 116 (201)
T COG1422 53 AAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD---------MKKLKKLQEKQMEMMDDQRE------- 116 (201)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhHHH------HHHHHhhccc
Q 038837 158 LEQALHMAELRAANVQRQLMYARCTFL------KFVKDFSEKH 194 (287)
Q Consensus 158 ~E~Alk~ae~~~~k~q~ea~p~~~~f~------k~~~~~~~ph 194 (287)
|||.|.+ |..++++ -|++-..+-+
T Consensus 117 -----------lmk~qfk--PM~~~~v~tI~~F~Wl~~~~~~~ 146 (201)
T COG1422 117 -----------LMKMQFK--PMLYISVLTIPFFAWLRWFVGTG 146 (201)
T ss_pred -----------HHHHhhh--hHHHHHHHHHHHHHHHHHHHccC
No 491
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=41.92 E-value=4.1e+02 Score=29.10 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHH-hHHHhhhHHHHHHHHhhhhccchhHHHH
Q 038837 20 LTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKL-VDDMTNKIHHLQSLLSKIKDDSSRAEER 98 (287)
Q Consensus 20 ~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~-i~eks~kI~sLqsEi~sLkk~s~~aee~ 98 (287)
+.+++-+.+--.|-+|+..||+|..+||..-.|..+++..-...+.+..+. +.|+.+.--.-+-.+-+.|.--.-..|+
T Consensus 167 lsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq 246 (861)
T KOG1899|consen 167 LSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQ 246 (861)
T ss_pred HhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
..+=+.++..|...+ -..+-..-..--.+.+.|..-+|.+-..|++|-+.|..+-+-+
T Consensus 247 ~~eK~~e~~rl~~~l------v~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~l 304 (861)
T KOG1899|consen 247 RSEKNDEEMRLLRTL------VQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYL 304 (861)
T ss_pred HhhhhhHHHHHHHHH------HHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
No 492
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=41.70 E-value=48 Score=26.36 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhc-cccCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 038837 6 HLTLLLVILFWSFTL-TSQNQQHSQQHLIAELQDAKLKIAGLETMLE 51 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~ 51 (287)
+++||-++++.++-- .+.+.-..+-+ +..+.|+++|.+||+..+
T Consensus 5 ~m~l~Avvlg~lllAGc~s~aK~dqls--s~vq~LnAkv~qLe~dv~ 49 (78)
T COG4238 5 KMTLGAVVLGSLLLAGCSSNAKIDQLS--SDVQTLNAKVDQLENDVN 49 (78)
T ss_pred hhhHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHH
No 493
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=41.46 E-value=86 Score=28.86 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
|.-.|+.+++.||+.|+...++...+ -..-..+.+-..-|++.| --|-+.++.++++---.=...+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~----------~~~~~~~~~lvk~e~EqL---L~YK~~ql~~~~~~~~~~~~~l~ 163 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR----------RSDTDSKPALVKREFEQL---LDYKERQLRELEEGRSKSGKNLK 163 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------ccCCcchHHHHHHHHHHH---HHHHHHHHHhhhccCCCCCCCHH
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
....++.++|......|.-+..-...|++++
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 494
>smart00338 BRLZ basic region leucin zipper.
Probab=41.44 E-value=58 Score=23.77 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhh
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRK 115 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elek 115 (287)
+-..|..|+.++..|.........++..|+.++..|+..+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~~ 65 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 495
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.29 E-value=1.4e+02 Score=21.76 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCch-----hhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHH
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKS-----NYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRL 108 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd-----~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~ 108 (287)
++.+....+..|.+-|.+....|.+.+ +.+...-+..++....|...+..++.+ ..|..-.+.. ......
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~----~~~~~~ 77 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG----PEDSDE 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC----CCcHHH
Q ss_pred HHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 109 LWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
+...++..|..-..|...+.+-..++++
T Consensus 78 i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 78 IQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 496
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=41.20 E-value=3.3e+02 Score=29.00 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQI 155 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qI 155 (287)
.++..++.++..+ ....+....|+..+.+.+...+++...+...||.+..++......|...+..+. -+.+.|.--
T Consensus 346 q~~~~~~~~l~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~-~~r~dW~la 421 (656)
T PRK06975 346 RKVDRLDQELVQR---QQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS-RNRDDWMIA 421 (656)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhhHHH
Q ss_pred HHHHHHHHHHHHHH
Q 038837 156 QHLEQALHMAELRA 169 (287)
Q Consensus 156 qk~E~Alk~ae~~~ 169 (287)
+.|+-+.+|--++
T Consensus 422 -Eae~Ll~lA~q~L 434 (656)
T PRK06975 422 -EVEQMLSSASQQL 434 (656)
T ss_pred -HHHHHHHHHHHHH
No 497
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=41.12 E-value=2.3e+02 Score=27.37 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH-----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 65 EERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER-----LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 65 ~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~-----i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
++..+..+++...|..-..+.++ +.+++ +..|+.++..+.+++.+-+.+ ..+..++.+.+.+.+.|..
T Consensus 144 ~~~~~~~~ekd~~i~~~~~~~e~------d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~ 216 (264)
T PF07246_consen 144 EELKKEAEEKDQLIKEKTQEREN------DRRNQILSHEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRN 216 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhchhh------hhHHHHHHHHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHH
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 038837 140 QVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 140 klek~~ki~~EQ~~qIqk~ 158 (287)
+.+.+..-..+=|..++.+
T Consensus 217 ~~~~l~~el~~aK~~~~~~ 235 (264)
T PF07246_consen 217 ESKWLEHELSDAKEDMIRL 235 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 498
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=5.7e+02 Score=28.80 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH-
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW- 110 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~- 110 (287)
+.+..-||..+...|--.+-+.+..|-.-.-.+......|.++...+....+|++-|+-.--..+++..-|--+-+.|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred ----------------HHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 111 ----------------AASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 111 ----------------~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ 174 (287)
.+|++-..+++.+--+..|.=+-|+.=+..--.-.+|+.-|....+..=-++++|.++++|..+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~ 594 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNER 594 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 038837 175 Q 175 (287)
Q Consensus 175 e 175 (287)
.
T Consensus 595 d 595 (1118)
T KOG1029|consen 595 D 595 (1118)
T ss_pred H
No 499
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=40.97 E-value=20 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRK 56 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qe 56 (287)
+++|-|.+-||.+|+.|+..++....|
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.93 E-value=1.6e+02 Score=29.63 Aligned_cols=96 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhh-hccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 86 SKI-KDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 86 ~sL-kk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
+++ +++....=+.+.+|.++-..|..+++..+.+...+-.......++-+ +.+.+..-..+-+.+|..+|..+..
T Consensus 16 ~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 16 EALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHhhccccc
Q 038837 165 AELRAANVQRQLMYARCTFLKFVKDFSEKHLP 196 (287)
Q Consensus 165 ae~~~~k~q~ea~p~~~~f~k~~~~~~~ph~~ 196 (287)
.+.+ +...+-.++++.+|.||
T Consensus 92 ~~~~-----------~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 92 LEAE-----------LEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHH-----------HHHHHHhCCCCCCccCC
Done!