Query 038837
Match_columns 287
No_of_seqs 53 out of 55
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.8 0.0026 8.9E-08 53.5 18.7 51 32-82 11-61 (284)
2 3na7_A HP0958; flagellar bioge 97.5 0.0078 2.7E-07 54.2 17.5 109 32-145 30-138 (256)
3 3na7_A HP0958; flagellar bioge 97.3 0.019 6.6E-07 51.6 18.2 53 104-156 90-142 (256)
4 2dfs_A Myosin-5A; myosin-V, in 97.1 0.0033 1.1E-07 67.5 12.8 118 39-159 919-1043(1080)
5 1i84_S Smooth muscle myosin he 96.8 0.0021 7.1E-08 69.2 8.2 24 31-54 861-884 (1184)
6 1i84_S Smooth muscle myosin he 96.7 0.0024 8.1E-08 68.7 7.5 16 35-50 858-873 (1184)
7 3oja_B Anopheles plasmodium-re 96.7 0.0073 2.5E-07 58.8 9.9 26 135-160 540-565 (597)
8 3o0z_A RHO-associated protein 96.5 0.094 3.2E-06 45.5 14.5 106 39-144 4-109 (168)
9 3oja_B Anopheles plasmodium-re 96.3 0.062 2.1E-06 52.2 13.7 62 100-161 519-580 (597)
10 2efr_A General control protein 96.2 0.21 7.3E-06 42.7 15.2 51 115-165 81-131 (155)
11 2fxo_A Myosin heavy chain, car 96.1 0.14 4.8E-06 41.9 13.2 115 34-162 13-127 (129)
12 3nmd_A CGMP dependent protein 96.1 0.0069 2.4E-07 46.0 4.8 46 43-88 21-66 (72)
13 2v71_A Nuclear distribution pr 95.7 0.31 1E-05 43.0 14.3 112 32-143 15-134 (189)
14 1ic2_A Tropomyosin alpha chain 95.5 0.064 2.2E-06 40.7 8.0 73 75-147 5-77 (81)
15 3a7p_A Autophagy protein 16; c 95.1 0.099 3.4E-06 44.7 8.9 68 32-106 59-126 (152)
16 3u1c_A Tropomyosin alpha-1 cha 95.1 0.45 1.6E-05 37.5 12.2 44 101-144 55-98 (101)
17 2dfs_A Myosin-5A; myosin-V, in 94.7 0.56 1.9E-05 50.4 15.5 60 83-145 977-1036(1080)
18 3u59_A Tropomyosin beta chain; 94.7 1.1 3.8E-05 35.0 13.5 44 101-144 55-98 (101)
19 2v71_A Nuclear distribution pr 94.7 0.88 3E-05 40.1 14.0 110 30-142 45-154 (189)
20 3u59_A Tropomyosin beta chain; 94.4 0.61 2.1E-05 36.6 11.2 73 75-147 8-80 (101)
21 3qh9_A Liprin-beta-2; coiled-c 94.3 0.11 3.9E-06 40.2 6.6 58 29-86 21-78 (81)
22 3u1c_A Tropomyosin alpha-1 cha 94.2 0.83 2.9E-05 36.0 11.7 71 76-146 9-79 (101)
23 2b9c_A Striated-muscle alpha t 94.0 0.72 2.5E-05 38.9 11.5 106 39-165 1-113 (147)
24 3u0c_A Invasin IPAB, 62 kDa an 93.7 0.77 2.6E-05 40.2 11.3 93 43-164 70-162 (201)
25 3hnw_A Uncharacterized protein 93.4 0.58 2E-05 39.0 9.9 54 71-124 77-130 (138)
26 3vkg_A Dynein heavy chain, cyt 93.0 1.8 6.2E-05 51.6 16.5 22 53-74 1939-1960(3245)
27 3vkg_A Dynein heavy chain, cyt 93.0 1.9 6.5E-05 51.4 16.5 39 104-142 2014-2052(3245)
28 3swk_A Vimentin; cytoskeleton, 92.9 1.6 5.3E-05 33.6 10.9 79 30-115 3-81 (86)
29 2ocy_A RAB guanine nucleotide 92.8 1.1 3.6E-05 38.4 10.8 18 31-48 24-41 (154)
30 2jee_A YIIU; FTSZ, septum, coi 92.4 0.5 1.7E-05 36.5 7.4 67 62-128 6-72 (81)
31 2v66_B Nuclear distribution pr 92.3 3.7 0.00013 33.3 12.9 84 37-144 6-89 (111)
32 3ghg_A Fibrinogen alpha chain; 92.3 0.66 2.2E-05 46.6 10.1 42 123-164 115-156 (562)
33 1ic2_A Tropomyosin alpha chain 92.3 1.1 3.7E-05 33.8 9.2 60 116-175 11-70 (81)
34 1deq_A Fibrinogen (alpha chain 91.7 1.6 5.6E-05 42.2 11.7 23 140-162 135-157 (390)
35 3hnw_A Uncharacterized protein 91.7 1.2 4.1E-05 37.1 9.6 56 95-150 80-135 (138)
36 3ol1_A Vimentin; structural ge 91.3 1.9 6.4E-05 34.8 10.2 37 78-114 64-100 (119)
37 2v66_B Nuclear distribution pr 91.3 1.5 5.3E-05 35.5 9.6 79 68-146 2-84 (111)
38 3o0z_A RHO-associated protein 91.0 7.2 0.00024 33.7 16.4 80 38-124 38-117 (168)
39 2fxo_A Myosin heavy chain, car 90.9 5.5 0.00019 32.3 13.7 46 117-162 68-113 (129)
40 2eqb_B RAB guanine nucleotide 89.9 1.4 4.9E-05 35.0 8.0 23 31-53 2-24 (97)
41 2efr_A General control protein 89.7 8.7 0.0003 32.7 13.7 93 32-124 26-125 (155)
42 2eqb_B RAB guanine nucleotide 89.3 4.8 0.00016 32.0 10.6 66 95-160 17-83 (97)
43 3tnu_B Keratin, type II cytosk 88.9 1.3 4.4E-05 36.0 7.3 26 96-121 81-106 (129)
44 3oja_A Leucine-rich immune mol 88.4 4 0.00014 38.8 11.5 17 38-54 364-380 (487)
45 3he5_A Synzip1; heterodimeric 88.2 1.1 3.7E-05 30.9 5.3 44 71-114 5-48 (49)
46 2yy0_A C-MYC-binding protein; 87.9 0.78 2.7E-05 32.5 4.7 38 21-58 12-50 (53)
47 3tnu_A Keratin, type I cytoske 87.6 1.2 4.2E-05 36.2 6.4 26 96-121 83-108 (131)
48 3tnu_B Keratin, type II cytosk 87.6 4.6 0.00016 32.6 9.9 41 95-135 34-74 (129)
49 3ghg_A Fibrinogen alpha chain; 87.4 2.8 9.5E-05 42.2 9.9 22 104-125 131-152 (562)
50 3efg_A Protein SLYX homolog; x 87.1 1.4 4.8E-05 33.4 6.0 51 119-169 8-58 (78)
51 1m1j_A Fibrinogen alpha subuni 85.9 11 0.00038 37.3 13.1 42 123-164 116-157 (491)
52 1m1j_B Fibrinogen beta chain; 85.7 11 0.00038 37.1 13.2 24 140-163 169-192 (464)
53 3tnu_A Keratin, type I cytoske 85.5 3.8 0.00013 33.3 8.3 39 96-134 37-75 (131)
54 2b9c_A Striated-muscle alpha t 84.9 3.6 0.00012 34.5 8.1 83 62-144 38-120 (147)
55 2zqm_A Prefoldin beta subunit 84.8 5 0.00017 31.0 8.5 96 30-136 9-109 (117)
56 1m1j_B Fibrinogen beta chain; 84.3 8.6 0.00029 38.0 11.6 23 129-151 172-194 (464)
57 1zxa_A CGMP-dependent protein 83.5 0.66 2.2E-05 34.7 2.6 39 50-88 13-51 (67)
58 3i00_A HIP-I, huntingtin-inter 83.1 6.7 0.00023 32.0 8.7 97 34-144 15-111 (120)
59 3a7o_A Autophagy protein 16; c 83.1 1.6 5.5E-05 33.1 4.5 46 36-88 13-58 (75)
60 1l8d_A DNA double-strand break 81.7 13 0.00046 28.6 9.7 25 99-123 66-90 (112)
61 2oto_A M protein; helical coil 80.9 22 0.00077 29.3 15.8 54 28-88 23-76 (155)
62 1fxk_A Prefoldin; archaeal pro 80.6 8.1 0.00028 29.4 8.1 40 95-134 63-102 (107)
63 3s84_A Apolipoprotein A-IV; fo 80.1 13 0.00045 33.8 10.5 24 188-211 127-150 (273)
64 1deq_A Fibrinogen (alpha chain 80.0 13 0.00043 36.1 10.7 25 100-124 116-140 (390)
65 2e7s_A RAB guanine nucleotide 79.8 11 0.00039 31.4 9.1 69 31-113 12-83 (135)
66 2wps_A Trimeric autotransporte 79.7 22 0.00076 28.5 11.1 86 67-152 4-96 (107)
67 3ol1_A Vimentin; structural ge 78.9 16 0.00055 29.3 9.6 43 100-149 65-107 (119)
68 3edv_A Spectrin beta chain, br 78.3 35 0.0012 29.9 14.8 127 29-156 187-322 (323)
69 1wt6_A Myotonin-protein kinase 76.8 5.5 0.00019 30.7 5.8 44 107-150 27-70 (81)
70 3ajw_A Flagellar FLIJ protein; 76.8 26 0.00088 27.7 15.5 116 45-160 9-130 (150)
71 3a7p_A Autophagy protein 16; c 76.7 20 0.00067 30.6 9.8 53 29-88 63-115 (152)
72 3trt_A Vimentin; cytoskeleton, 76.0 9.6 0.00033 27.8 6.9 42 48-89 35-76 (77)
73 1fxk_A Prefoldin; archaeal pro 75.0 24 0.00082 26.7 9.3 38 32-69 6-43 (107)
74 3he5_B Synzip2; heterodimeric 74.8 4 0.00014 28.3 4.1 22 66-87 28-49 (52)
75 2ocy_A RAB guanine nucleotide 74.5 39 0.0013 28.7 16.0 117 35-169 7-131 (154)
76 1d7m_A Cortexillin I; coiled-c 73.8 31 0.0011 27.2 12.9 45 99-143 48-92 (101)
77 1m1j_C Fibrinogen gamma chain; 73.3 22 0.00075 34.4 10.5 41 97-137 84-124 (409)
78 2pms_C Pneumococcal surface pr 73.0 10 0.00036 31.3 7.0 19 129-147 65-83 (125)
79 3i00_A HIP-I, huntingtin-inter 72.3 21 0.00071 29.0 8.6 88 76-173 22-112 (120)
80 2v4h_A NF-kappa-B essential mo 71.9 17 0.00058 29.4 7.9 68 34-126 24-91 (110)
81 3bas_A Myosin heavy chain, str 71.6 31 0.0011 26.2 11.2 29 96-124 13-41 (89)
82 3tul_A Cell invasion protein S 71.6 47 0.0016 28.3 12.0 100 3-150 2-101 (158)
83 1l8d_A DNA double-strand break 71.1 33 0.0011 26.3 9.7 6 119-124 79-84 (112)
84 2c5k_T Syntaxin TLG1, T-snare 70.8 21 0.00071 27.7 8.0 75 37-113 13-91 (95)
85 2i1j_A Moesin; FERM, coiled-co 70.7 3.4 0.00012 41.3 4.3 107 68-174 334-461 (575)
86 2zqm_A Prefoldin beta subunit 70.1 21 0.00073 27.3 8.0 26 30-55 16-41 (117)
87 3b5n_D Protein transport prote 69.4 14 0.00049 26.7 6.3 35 109-143 29-63 (64)
88 3mq7_A Bone marrow stromal ant 69.2 35 0.0012 28.0 9.2 24 37-60 21-44 (121)
89 3efg_A Protein SLYX homolog; x 68.0 7.4 0.00025 29.4 4.7 28 30-57 10-37 (78)
90 2e7s_A RAB guanine nucleotide 67.9 45 0.0015 27.8 9.8 52 102-153 44-96 (135)
91 3htk_A Structural maintenance 67.6 24 0.0008 24.4 7.0 48 103-150 4-51 (60)
92 2oqq_A Transcription factor HY 67.1 13 0.00043 25.4 5.1 32 121-152 6-37 (42)
93 2lw1_A ABC transporter ATP-bin 67.0 25 0.00087 26.5 7.7 29 30-58 18-46 (89)
94 3mq9_A Bone marrow stromal ant 66.9 48 0.0016 31.1 11.2 15 99-113 399-413 (471)
95 1go4_E MAD1 (mitotic arrest de 66.8 28 0.00094 27.7 8.0 25 101-125 72-96 (100)
96 2yko_A LINE-1 ORF1P; RNA-bindi 66.8 4.8 0.00017 36.5 4.0 35 32-66 4-38 (233)
97 2lw1_A ABC transporter ATP-bin 66.7 19 0.00066 27.2 6.9 63 64-127 24-86 (89)
98 2no2_A HIP-I, huntingtin-inter 66.3 39 0.0013 26.8 8.9 55 31-88 26-80 (107)
99 3nmd_A CGMP dependent protein 66.1 17 0.00059 27.3 6.3 49 99-147 21-69 (72)
100 3uul_A Utrophin; spectrin repe 65.1 40 0.0014 25.0 13.2 64 99-165 45-115 (118)
101 3ghg_C Fibrinogen gamma chain; 64.8 65 0.0022 31.3 11.8 45 99-143 86-130 (411)
102 1deb_A APC protein, adenomatou 63.8 14 0.00049 26.2 5.1 44 97-140 10-53 (54)
103 1gl2_D Syntaxin 8, vesicle tra 63.1 14 0.00048 26.2 5.2 39 106-144 25-63 (65)
104 1lwu_C Fibrinogen gamma chain; 63.0 13 0.00044 35.0 6.3 43 99-141 7-49 (323)
105 2v4h_A NF-kappa-B essential mo 62.9 49 0.0017 26.7 8.9 76 29-115 26-108 (110)
106 2z5i_A TM, general control pro 62.5 25 0.00084 24.6 6.2 34 125-158 5-38 (52)
107 1a93_B MAX protein, coiled coi 62.5 4.4 0.00015 26.5 2.1 29 74-102 5-33 (34)
108 1u4q_A Spectrin alpha chain, b 62.1 79 0.0027 27.4 13.7 120 37-156 184-318 (322)
109 3m0d_C TNF receptor-associated 61.8 21 0.00072 25.7 6.0 34 77-110 28-61 (65)
110 3mq7_A Bone marrow stromal ant 60.8 68 0.0023 26.3 9.7 14 105-118 72-85 (121)
111 4dyl_A Tyrosine-protein kinase 60.6 36 0.0012 32.1 9.0 81 36-126 304-388 (406)
112 1g6u_A Domain swapped dimer; d 59.1 22 0.00074 24.3 5.2 21 122-142 24-44 (48)
113 1n7s_D SNAP-25A; neuronal snar 59.0 36 0.0012 24.1 6.8 38 107-144 27-64 (66)
114 2xnx_M M protein, M1-BC1; cell 58.9 18 0.0006 30.7 5.8 46 100-145 62-107 (146)
115 3lay_A Zinc resistance-associa 58.8 22 0.00075 30.6 6.6 45 75-119 91-135 (175)
116 1ykh_B RNA polymerase II holoe 58.8 41 0.0014 27.4 7.9 47 74-123 69-118 (132)
117 1yke_B RNA polymerase II holoe 58.3 36 0.0012 28.5 7.7 47 74-123 69-118 (151)
118 1m1j_C Fibrinogen gamma chain; 57.9 17 0.00057 35.3 6.2 44 112-162 85-128 (409)
119 3iyk_A VP5; icosahedral virus; 57.5 1.1E+02 0.0037 30.7 11.9 26 98-123 147-172 (526)
120 3uun_A Dystrophin; triple heli 57.0 56 0.0019 24.0 12.6 61 100-163 46-113 (119)
121 4emc_A Monopolin complex subun 56.7 41 0.0014 29.6 8.0 7 104-110 48-54 (190)
122 3mq9_A Bone marrow stromal ant 56.6 1.3E+02 0.0044 28.1 12.7 61 109-169 402-466 (471)
123 1ytz_T Troponin T; muscle, THI 56.3 21 0.00071 28.6 5.6 47 101-147 46-92 (107)
124 1sfc_D Protein (SNAP-25B), pro 55.8 38 0.0013 25.5 6.8 38 108-145 47-84 (87)
125 3s84_A Apolipoprotein A-IV; fo 55.6 1.2E+02 0.0041 27.4 17.1 31 176-206 225-262 (273)
126 2xdj_A Uncharacterized protein 55.0 32 0.0011 26.2 6.2 23 100-122 30-52 (83)
127 3fb2_A Spectrin alpha chain, b 54.2 81 0.0028 26.2 9.4 20 33-52 91-110 (218)
128 2w83_C C-JUN-amino-terminal ki 54.2 38 0.0013 25.8 6.4 36 73-108 41-76 (77)
129 3c9i_A Tail needle protein GP2 53.9 53 0.0018 29.5 8.3 16 122-137 130-145 (242)
130 1ci6_A Transcription factor AT 53.5 24 0.00081 25.3 5.0 36 78-113 25-60 (63)
131 1zxa_A CGMP-dependent protein 53.4 13 0.00045 27.6 3.7 48 102-149 9-56 (67)
132 1j1d_B Troponin T, TNT; THIN f 53.3 24 0.00082 28.2 5.5 47 101-147 46-92 (106)
133 1sjj_A Actinin; 3-helix bundle 53.2 73 0.0025 32.2 10.4 129 27-157 443-596 (863)
134 3cvf_A Homer-3, homer protein 52.9 32 0.0011 26.2 5.9 30 94-123 17-46 (79)
135 2z5i_A TM, general control pro 52.6 28 0.00095 24.3 5.1 27 94-120 9-35 (52)
136 3c9i_A Tail needle protein GP2 52.5 1E+02 0.0034 27.7 9.8 6 155-160 228-233 (242)
137 2wt7_A Proto-oncogene protein 52.4 25 0.00086 25.0 5.0 15 99-113 46-60 (63)
138 1x79_B RAB GTPase binding effe 52.3 91 0.0031 25.1 10.2 67 99-175 8-74 (112)
139 2yo3_A General control protein 52.2 24 0.00082 32.6 6.0 42 42-90 217-258 (268)
140 3ghg_C Fibrinogen gamma chain; 51.8 1.4E+02 0.0048 28.9 11.6 50 108-164 81-130 (411)
141 2nps_D Syntaxin-6; vesicle fus 50.8 31 0.0011 25.6 5.5 45 104-148 33-77 (82)
142 1s35_A Beta-I spectrin, spectr 50.5 1E+02 0.0035 25.2 16.4 102 24-128 70-171 (214)
143 1t3j_A Mitofusin 1; coiled coi 50.1 16 0.00053 29.0 3.8 38 39-86 34-71 (96)
144 3m0a_A TNF receptor-associated 49.8 59 0.002 22.9 6.7 35 76-110 26-60 (66)
145 3m9b_A Proteasome-associated A 49.7 26 0.00088 32.1 5.7 19 33-51 23-41 (251)
146 1cun_A Protein (alpha spectrin 49.6 1E+02 0.0035 25.0 15.6 96 29-127 74-169 (213)
147 3jsv_C NF-kappa-B essential mo 49.3 67 0.0023 25.3 7.3 73 64-140 11-83 (94)
148 1t2k_D Cyclic-AMP-dependent tr 49.2 28 0.00095 24.5 4.8 39 39-85 7-45 (61)
149 1ik9_A DNA repair protein XRCC 49.2 1.4E+02 0.0047 26.2 11.0 53 97-162 146-198 (213)
150 2yko_A LINE-1 ORF1P; RNA-bindi 48.7 37 0.0013 30.7 6.6 46 124-169 5-50 (233)
151 3bas_A Myosin heavy chain, str 48.7 69 0.0024 24.2 7.3 22 67-88 33-54 (89)
152 2qyw_A Vesicle transport throu 48.5 74 0.0025 24.6 7.6 54 60-113 47-101 (102)
153 1gd2_E Transcription factor PA 48.1 26 0.00089 26.0 4.6 12 61-72 28-39 (70)
154 1gd2_E Transcription factor PA 48.1 29 0.00098 25.7 4.8 17 99-115 31-47 (70)
155 1j1d_C Troponin I, TNI; THIN f 48.0 39 0.0013 28.0 6.1 47 100-146 61-107 (133)
156 4dk0_A Putative MACA; alpha-ha 47.9 35 0.0012 30.7 6.4 28 30-57 66-93 (369)
157 1gk4_A Vimentin; intermediate 46.9 50 0.0017 24.7 6.2 20 35-54 2-21 (84)
158 1m1j_A Fibrinogen alpha subuni 46.8 2.3E+02 0.0078 28.2 14.0 25 100-124 114-138 (491)
159 4emc_A Monopolin complex subun 46.6 35 0.0012 30.0 5.9 36 33-68 12-47 (190)
160 2no2_A HIP-I, huntingtin-inter 46.1 1.1E+02 0.0037 24.2 10.4 10 99-108 31-40 (107)
161 1g6u_A Domain swapped dimer; d 46.0 50 0.0017 22.5 5.3 44 78-122 2-45 (48)
162 3iv1_A Tumor susceptibility ge 45.7 90 0.0031 23.7 7.3 55 70-124 19-73 (78)
163 1vcs_A Vesicle transport throu 45.3 1E+02 0.0035 23.7 9.4 80 32-117 14-94 (102)
164 4etp_A Kinesin-like protein KA 45.3 26 0.0009 33.4 5.4 48 30-77 6-53 (403)
165 3he5_A Synzip1; heterodimeric 45.3 38 0.0013 23.1 4.6 17 36-52 5-21 (49)
166 1l4a_D S-SNAP25 fusion protein 45.1 31 0.0011 26.2 4.8 39 106-144 46-84 (87)
167 4fla_A Regulation of nuclear P 44.8 1.4E+02 0.0047 25.0 9.8 58 99-156 81-145 (152)
168 1cii_A Colicin IA; bacteriocin 44.4 1.5E+02 0.005 29.8 10.5 33 251-283 552-585 (602)
169 3s4r_A Vimentin; alpha-helix, 44.2 88 0.003 24.0 7.3 10 36-45 11-20 (93)
170 3b8m_A Ferric enterobactin (en 43.9 63 0.0021 29.3 7.5 37 132-168 162-199 (280)
171 3rvy_A ION transport protein; 43.2 9.1 0.00031 33.7 1.7 24 34-57 256-279 (285)
172 1i6z_A BAG-family molecular ch 43.2 1.4E+02 0.0049 24.8 9.8 47 63-109 22-71 (135)
173 3ghg_B Fibrinogen beta chain; 43.1 2.5E+02 0.0087 27.6 12.2 28 137-164 161-188 (461)
174 3fpp_A Macrolide-specific effl 43.0 35 0.0012 30.4 5.6 24 31-54 66-89 (341)
175 4e29_A Chimeric WZZB chain len 42.9 73 0.0025 28.7 7.6 40 129-168 125-165 (248)
176 1lwu_C Fibrinogen gamma chain; 42.8 27 0.00094 32.7 5.0 44 64-114 14-57 (323)
177 2efk_A CDC42-interacting prote 42.7 1.7E+02 0.0057 25.4 12.8 11 256-266 259-269 (301)
178 1wt6_A Myotonin-protein kinase 42.4 43 0.0015 25.7 5.1 26 94-119 49-74 (81)
179 1gk4_A Vimentin; intermediate 42.1 64 0.0022 24.1 6.1 29 95-123 31-59 (84)
180 4gkw_A Spindle assembly abnorm 41.8 1.6E+02 0.0054 24.8 10.9 16 130-145 103-118 (167)
181 1x8y_A Lamin A/C; structural p 41.0 23 0.00079 26.8 3.4 26 96-121 34-59 (86)
182 2zdi_C Prefoldin subunit alpha 40.8 1.4E+02 0.0049 24.1 9.5 35 129-163 102-136 (151)
183 3ni0_A Bone marrow stromal ant 40.8 1.3E+02 0.0046 23.7 8.2 17 98-114 68-84 (99)
184 1go4_E MAD1 (mitotic arrest de 39.8 84 0.0029 24.8 6.6 31 96-126 11-41 (100)
185 3u06_A Protein claret segregat 39.8 42 0.0014 32.2 5.9 58 28-85 4-61 (412)
186 2w83_C C-JUN-amino-terminal ki 39.6 85 0.0029 23.9 6.3 35 98-132 38-72 (77)
187 2oto_A M protein; helical coil 39.2 1.6E+02 0.0054 24.1 13.4 13 31-43 33-45 (155)
188 3ni0_A Bone marrow stromal ant 38.7 1.2E+02 0.004 24.0 7.2 15 105-119 68-82 (99)
189 3m91_A Proteasome-associated A 38.7 80 0.0027 22.1 5.6 43 96-145 8-50 (51)
190 2d1l_A Metastasis suppressor p 38.4 24 0.00083 32.0 3.8 27 217-243 26-52 (253)
191 2iak_A Bullous pemphigoid anti 38.2 1.2E+02 0.0041 25.5 8.0 14 38-51 64-77 (224)
192 1a93_B MAX protein, coiled coi 38.2 37 0.0013 22.1 3.6 22 30-51 10-31 (34)
193 1nfn_A Apolipoprotein E3; lipi 38.1 75 0.0026 27.2 6.7 28 191-218 115-142 (191)
194 1t3j_A Mitofusin 1; coiled coi 38.0 97 0.0033 24.4 6.7 43 99-145 49-91 (96)
195 2j1d_G DAAM1, disheveled-assoc 37.3 1.5E+02 0.005 28.7 9.4 80 68-147 266-357 (483)
196 3ghg_B Fibrinogen beta chain; 37.0 1.9E+02 0.0067 28.5 10.1 11 42-52 96-106 (461)
197 3cve_A Homer protein homolog 1 37.0 1.3E+02 0.0044 22.4 7.0 59 30-88 10-68 (72)
198 1z56_A Ligase interacting fact 36.8 17 0.00059 33.1 2.4 57 32-88 169-233 (246)
199 3cvf_A Homer-3, homer protein 36.4 1.3E+02 0.0045 22.8 7.0 59 30-88 16-74 (79)
200 2yy0_A C-MYC-binding protein; 36.4 32 0.0011 24.1 3.3 11 131-141 39-49 (53)
201 2zdi_C Prefoldin subunit alpha 36.3 68 0.0023 26.0 5.9 44 96-139 97-140 (151)
202 3pdy_A Plectin; cytoskeleton, 36.0 1.9E+02 0.0065 24.1 9.8 9 150-158 191-199 (210)
203 2lf0_A Uncharacterized protein 35.9 92 0.0031 25.6 6.4 51 32-84 8-58 (123)
204 1jnm_A Proto-oncogene C-JUN; B 35.8 22 0.00076 25.1 2.5 11 39-49 7-17 (62)
205 2lem_A Apolipoprotein A-I; lip 35.3 2.1E+02 0.0073 24.5 11.6 84 171-255 91-189 (216)
206 2xnx_M M protein, M1-BC1; cell 35.2 90 0.0031 26.3 6.5 62 81-142 64-125 (146)
207 3m9b_A Proteasome-associated A 35.2 40 0.0014 30.8 4.6 33 125-157 54-86 (251)
208 4etp_A Kinesin-like protein KA 35.0 59 0.002 31.0 6.0 53 34-86 3-55 (403)
209 1zme_C Proline utilization tra 34.7 46 0.0016 22.9 4.0 25 34-58 44-68 (70)
210 1nkp_B MAX protein, MYC proto- 34.6 38 0.0013 25.0 3.7 14 37-50 15-28 (83)
211 2w6b_A RHO guanine nucleotide 34.5 1E+02 0.0035 22.1 5.6 39 99-141 12-50 (56)
212 1ses_A Seryl-tRNA synthetase; 34.1 1.6E+02 0.0054 28.1 8.9 21 232-252 166-186 (421)
213 3r2p_A Apolipoprotein A-I; amp 33.6 2.1E+02 0.0071 23.9 8.7 59 188-246 117-179 (185)
214 3hd7_B Syntaxin-1A; membrane p 33.5 1.7E+02 0.0057 22.7 9.0 40 105-144 36-75 (109)
215 2nrj_A HBL B protein; enteroto 33.4 1.5E+02 0.0052 27.5 8.4 122 30-155 140-283 (346)
216 1nfn_A Apolipoprotein E3; lipi 33.3 2.2E+02 0.0077 24.1 9.6 32 188-219 156-187 (191)
217 1j1e_C Troponin I, TNI; THIN f 33.2 59 0.002 28.3 5.2 62 100-161 61-123 (180)
218 1f5n_A Interferon-induced guan 32.6 1.8E+02 0.0062 29.1 9.4 81 29-112 496-582 (592)
219 2ke4_A CDC42-interacting prote 32.5 1.7E+02 0.0057 22.8 7.3 30 95-124 13-42 (98)
220 1x8y_A Lamin A/C; structural p 31.8 47 0.0016 25.0 3.9 45 34-88 3-47 (86)
221 1t2k_D Cyclic-AMP-dependent tr 31.8 97 0.0033 21.6 5.3 35 77-111 23-57 (61)
222 4e61_A Protein BIM1; EB1-like 31.6 1.1E+02 0.0039 24.4 6.2 58 27-88 4-61 (106)
223 3lf9_A 4E10_D0_1IS1A_001_C (T1 31.2 2.2E+02 0.0074 23.3 9.0 86 74-172 13-113 (121)
224 3b8o_A Lipopolysaccharide bios 31.1 66 0.0022 28.8 5.4 37 132-168 147-184 (265)
225 2wt7_B Transcription factor MA 31.0 68 0.0023 24.9 4.7 26 98-123 49-74 (90)
226 1jcd_A Major outer membrane li 30.9 1.4E+02 0.0047 20.9 6.9 45 97-141 4-48 (52)
227 2akf_A Coronin-1A; coiled coil 30.8 51 0.0017 20.9 3.2 24 101-124 3-26 (32)
228 3a7o_A Autophagy protein 16; c 30.5 1.3E+02 0.0045 22.6 6.0 42 96-137 31-72 (75)
229 2ve7_A Kinetochore protein HEC 30.4 52 0.0018 30.3 4.7 14 7-20 100-113 (315)
230 1u5p_A Spectrin alpha chain, b 30.3 2.2E+02 0.0075 23.1 14.1 90 27-119 75-164 (216)
231 3mov_A Lamin-B1; LMNB1, B-type 30.2 88 0.003 24.2 5.3 22 99-120 46-67 (95)
232 1vcs_A Vesicle transport throu 30.0 80 0.0027 24.4 5.0 49 129-177 13-62 (102)
233 3gn4_A Myosin-VI; unconvention 29.4 98 0.0034 26.1 5.8 67 41-114 72-145 (148)
234 2pms_C Pneumococcal surface pr 29.4 2.4E+02 0.0081 23.2 10.5 21 39-59 11-31 (125)
235 1kd8_A GABH AIV, GCN4 acid bas 29.2 77 0.0026 20.9 3.9 27 123-149 6-32 (36)
236 1sjj_A Actinin; 3-helix bundle 29.1 4.5E+02 0.016 26.4 22.9 50 217-266 573-625 (863)
237 2wps_A Trimeric autotransporte 29.0 2.2E+02 0.0076 22.7 8.6 17 99-115 60-76 (107)
238 1fxk_C Protein (prefoldin); ar 29.0 2.1E+02 0.0071 22.4 11.8 24 100-123 91-114 (133)
239 3ljm_A Coil Ser L9C; de novo d 28.7 50 0.0017 20.6 2.9 18 120-137 10-27 (31)
240 1wle_A Seryl-tRNA synthetase; 28.1 1.2E+02 0.0043 29.8 7.2 23 231-253 218-240 (501)
241 4dk0_A Putative MACA; alpha-ha 28.0 3.2E+02 0.011 24.2 9.7 16 158-173 134-149 (369)
242 4dzn_A Coiled-coil peptide CC- 28.0 92 0.0031 19.7 4.0 22 31-52 6-27 (33)
243 3cve_A Homer protein homolog 1 27.9 1.9E+02 0.0064 21.5 7.2 29 95-123 12-40 (72)
244 1cii_A Colicin IA; bacteriocin 27.8 4E+02 0.014 26.8 10.5 18 71-88 358-375 (602)
245 2ch7_A Methyl-accepting chemot 27.7 3E+02 0.01 23.8 13.5 24 123-146 105-128 (309)
246 3q8t_A Beclin-1; autophagy, AT 27.3 2.1E+02 0.0072 21.9 11.0 90 43-146 6-95 (96)
247 2wq1_A General control protein 27.1 59 0.002 21.0 3.1 22 67-88 5-26 (33)
248 4h22_A Leucine-rich repeat fli 27.0 1.9E+02 0.0064 23.1 6.7 37 32-68 28-64 (103)
249 3g9g_A Suppressor of yeast pro 26.4 3.7E+02 0.013 24.5 10.9 52 20-74 36-87 (287)
250 2b9b_A Fusion glycoprotein F0; 26.1 2.1E+02 0.0071 28.5 8.3 58 27-91 423-480 (497)
251 3viq_B Mating-type switching p 25.9 2.3E+02 0.0077 21.8 8.4 32 30-61 4-35 (85)
252 1quu_A Human skeletal muscle a 25.6 3E+02 0.01 23.2 13.8 60 97-156 162-239 (250)
253 1ux5_A BNI1 protein; structura 25.4 3.4E+02 0.012 25.3 9.4 48 68-115 265-316 (411)
254 1wle_A Seryl-tRNA synthetase; 25.2 3.3E+02 0.011 26.7 9.6 19 151-169 128-146 (501)
255 2i1j_A Moesin; FERM, coiled-co 25.0 1.1E+02 0.0037 30.5 6.1 111 34-144 335-459 (575)
256 3m0d_C TNF receptor-associated 24.9 1.9E+02 0.0065 20.6 7.3 19 68-86 5-23 (65)
257 2qih_A Protein USPA1; trimeric 24.4 3.2E+02 0.011 23.0 13.4 102 30-138 36-148 (157)
258 2zvf_A Alanyl-tRNA synthetase; 24.2 1.6E+02 0.0056 23.7 6.2 32 89-120 24-55 (171)
259 3edv_A Spectrin beta chain, br 24.1 3.5E+02 0.012 23.3 16.0 31 29-59 81-111 (323)
260 4h22_A Leucine-rich repeat fli 24.0 2.7E+02 0.0093 22.1 7.6 15 105-119 31-45 (103)
261 3edu_A Beta-I spectrin, spectr 24.0 3E+02 0.01 22.6 12.3 31 29-59 76-106 (218)
262 1fxk_C Protein (prefoldin); ar 23.8 1.5E+02 0.005 23.2 5.7 36 95-130 93-128 (133)
263 3ltl_A Brefeldin A-inhibited g 23.6 1.5E+02 0.0052 26.0 6.2 61 211-271 81-154 (211)
264 3f6n_A Virion-associated prote 23.5 1.5E+02 0.0051 24.5 5.6 26 34-59 9-34 (129)
265 4dac_A Computationally designe 23.5 73 0.0025 19.5 2.8 19 96-114 7-25 (28)
266 2qyw_A Vesicle transport throu 23.4 2.5E+02 0.0086 21.5 7.9 54 124-177 18-73 (102)
267 3iv1_A Tumor susceptibility ge 23.3 2.4E+02 0.0083 21.3 8.4 16 102-117 16-31 (78)
268 1lrz_A FEMA, factor essential 23.0 1.3E+02 0.0046 28.0 6.1 20 95-114 279-298 (426)
269 3onj_A T-snare VTI1; helix, HA 22.8 2.5E+02 0.0086 21.3 7.8 50 128-177 8-58 (97)
270 3swk_A Vimentin; cytoskeleton, 22.7 2.5E+02 0.0084 21.1 9.6 37 100-143 45-81 (86)
271 1nkp_B MAX protein, MYC proto- 22.6 94 0.0032 22.8 4.0 25 99-123 49-73 (83)
272 3s9g_A Protein hexim1; cyclin 22.5 1.2E+02 0.0042 24.1 4.8 14 97-110 65-78 (104)
273 1ses_A Seryl-tRNA synthetase; 21.8 3.9E+02 0.013 25.3 9.2 23 36-58 37-59 (421)
274 2ve7_A Kinetochore protein HEC 21.6 1.2E+02 0.0039 28.0 5.2 33 119-151 186-218 (315)
275 3etw_A Adhesin A; antiparallel 21.6 3.2E+02 0.011 22.1 11.4 90 31-124 6-102 (119)
276 2fcw_A Alpha-2-macroglobulin r 21.4 3.2E+02 0.011 21.9 8.8 18 127-144 76-93 (109)
277 1zhc_A Hypothetical protein HP 21.4 2.5E+02 0.0084 20.6 6.7 60 52-119 7-66 (76)
278 1x4t_A Hypothetical protein LO 21.3 78 0.0027 24.8 3.4 45 68-127 31-75 (92)
279 3cl3_D NF-kappa-B essential mo 21.3 60 0.002 27.0 2.9 55 110-164 15-73 (130)
280 3plt_A Sphingolipid long chain 21.2 4.5E+02 0.015 23.6 10.9 24 68-91 61-84 (234)
281 3onj_A T-snare VTI1; helix, HA 21.2 2.7E+02 0.0093 21.1 7.9 56 60-115 32-91 (97)
282 1v9d_A Diaphanous protein homo 21.1 4.7E+02 0.016 23.7 9.6 122 54-175 170-335 (340)
283 2oqq_A Transcription factor HY 21.1 98 0.0033 21.0 3.4 23 63-85 4-26 (42)
284 4abm_A Charged multivesicular 21.0 2.6E+02 0.0089 20.8 7.6 25 30-54 9-33 (79)
285 1wlq_A Geminin; coiled-coil; 2 20.9 2.9E+02 0.0098 21.2 9.6 71 18-115 9-80 (83)
286 2xv5_A Lamin-A/C; structural p 20.9 1.8E+02 0.0063 21.5 5.3 27 31-57 2-28 (74)
287 1h2v_C 80 kDa nuclear CAP bind 20.6 96 0.0033 32.2 4.9 131 109-253 622-753 (771)
288 2wrg_I Hemagglutinin HA2 chain 20.6 1.5E+02 0.0052 26.4 5.5 71 107-177 50-123 (222)
289 1ci6_A Transcription factor AT 20.4 2.3E+02 0.0079 19.9 6.0 27 134-160 25-51 (63)
290 2dq0_A Seryl-tRNA synthetase; 20.3 1E+02 0.0035 29.8 4.8 76 55-141 31-106 (455)
291 3jsv_C NF-kappa-B essential mo 20.2 2.2E+02 0.0075 22.3 5.8 21 99-119 70-90 (94)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.82 E-value=0.0026 Score=53.54 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQ 82 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLq 82 (287)
+..+++.+..++..|+..+.+...++..-...+.+.+..+......+..+.
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333333333333333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.46 E-value=0.0078 Score=54.19 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
+..+++.|...++.++..+.....+++.-+..+..++..|.+...+|...+..+.+.+ ..+...+|+++++.++.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444333321 22224445555554444
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
.+...+.++-.+..+....++.+.++..+++.++
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.31 E-value=0.019 Score=51.59 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
++.+.|.++++....++..+|....+...+++++...++.++....+....+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666665555555554444443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.13 E-value=0.0033 Score=67.49 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHh----HHHhhhHHHHHHHHhhhhc---cchhHHHHHHHHHHHHHHHHH
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLV----DDMTNKIHHLQSLLSKIKD---DSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i----~eks~kI~sLqsEi~sLkk---~s~~aee~i~eLEkQVe~L~~ 111 (287)
++.....||+.|.+.++.+..+.....++...+ ..+...+..|+.+++.+.. ..-..+.++..|+++++.|..
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666655444444332222 2334455555555444411 122345668999999999999
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLE 159 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E 159 (287)
++.+.++++..+|.+...... +|..+|.+|++.+..-..++.++|
T Consensus 999 ~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 999 ELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877764 666888888888888888888887
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.83 E-value=0.0021 Score=69.15 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
.+..++.+++.++..++..+.+..
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele 884 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELE 884 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444433
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.71 E-value=0.0024 Score=68.68 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 038837 35 ELQDAKLKIAGLETML 50 (287)
Q Consensus 35 eL~qLk~kIa~LES~i 50 (287)
++.+++.++..|+..+
T Consensus 858 El~~L~~eL~el~~~L 873 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQ 873 (1184)
T ss_dssp HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.66 E-value=0.0073 Score=58.81 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 135 EEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 135 ~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
+.+..+++.+++...+++.+++.+.+
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 33333344444444444444443333
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.46 E-value=0.094 Score=45.54 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNF 118 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~ 118 (287)
.+.||.+||-+++|.+..|+.=.+.-..+.|...|++..+++++.-..-|..-..-.+..-.+||+++-.|+..++.-+.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999988888888899999998888888877666544555566668888999999988888888
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
+..--..+..|.+-|+..|..+|+.+
T Consensus 84 ~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 84 DRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777778888888888888888764
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.25 E-value=0.062 Score=52.21 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQA 161 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~A 161 (287)
..++.+.+.+++++.+.+.+...++......|+++++-..+++.+..-++..+.+|+++++.
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444445555555553
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.21 E-value=0.21 Score=42.70 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=32.9
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
....+..--|.||..||.+|..|...++++++-....+.+...+.+-|..+
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456677777777777777777777777666666666665555433
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.11 E-value=0.14 Score=41.88 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
.++..+..++..|+..+.... ..+.+.=.+..++..++..-...|++|-++ ..+.|+....|...-
T Consensus 13 ~E~~~~~eel~~lke~l~k~e---~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-----------l~e~EE~~~~L~~~k 78 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSE---ARRKELEEKMVSLLQEKNDLQLQVQAEQDN-----------LADAEERCDQLIKNK 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHH
Confidence 344445555555544443211 112222222344444444444445544322 344444555555444
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
.......+-+++|..+-|.+..+|+.+-.+++..+.+-+.+|..+|.++
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566667788888999999999999999999999999999888654
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=96.11 E-value=0.0069 Score=46.03 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 43 IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
|..|+-.+..+..+|..||..|+++|+.+.++...|..|+++++.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788889999999999999999999999999999999999999876
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.70 E-value=0.31 Score=43.00 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hhcC-chhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc--ch--hHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIR---KVNG-KSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD--SS--RAEERLNALE 103 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~q---el~~-Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~--s~--~aee~i~eLE 103 (287)
.+....+.+.++..|+..+++-.. +|.. =+..|.++|+.+++...++..|..|++++|.. .+ .+..++..|+
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554322 1111 12356677777777778888888888877322 22 2334466666
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
+++..|....+.....+-.||-.--|-|.+.....+.++.
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 6666666555555555444444444444444444444333
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.48 E-value=0.064 Score=40.68 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
-++|+.|..+.++-......++.++.+.++....+..++...+.++..||.-...++.++.+.+.+|+...+.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888777766666677778888888888888888888888888888888888888888888877664
No 15
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.099 Score=44.74 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEI 106 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQV 106 (287)
+.+..+++...|..|++.+.... ..|..++..+++|.+.++.|+.|+.+|.-.-...+++...|+++=
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~-------~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKE-------QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777744 556666666777777777777777777444445555555555544
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.12 E-value=0.45 Score=37.50 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-+|.+++.+...+..-+.+...-+-.+.+||.-|..||.++.-+
T Consensus 55 ~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555556666666666555443
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.73 E-value=0.56 Score=50.42 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 83 SLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 83 sEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
.|..+++..-...++.+.+|+++++++.++.+....+...+.. +.+.+|..|.....+++
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3333333333445566677777777777666665554443332 33344444444433333
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.71 E-value=1.1 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-+|.+++.....+..-+.+.+.-+-.+.+||.-|..||.++.-+
T Consensus 55 ~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 55 GTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555556666666666555443
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.68 E-value=0.88 Score=40.07 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..|..+|+++..++..|.+.+.....++.+=. ...+..-.+-...|.+|+.+++.|....-....++.+||-.=+-|
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k---~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALK---EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45667777777777777777776665543211 222444455566788888887777544444445566666666666
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
.+..|....-..-+|++.+.|=.+..-|.+.|+
T Consensus 122 Er~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666554
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.36 E-value=0.61 Score=36.56 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
-.||+.|.-+-++.....-.++.+++.++..-..+..++...+.+...+|.-+..++.++.+.+.+|+...+.
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544433333344445555555555555555555555555555555555555555555554444
No 21
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=94.32 E-value=0.11 Score=40.15 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~ 86 (287)
...|..|+..||.||..+|+.=..-.+.|++..+.|..+......+...|..|++++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999999999999999999874
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.20 E-value=0.83 Score=35.96 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
.||+.|..+-++-....-.++.+++.++..-..+..++...+.+...+|.-...++.++.+.+.+++.-++
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544432222233344444444444444444444444444444444445555554444444433
No 23
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.97 E-value=0.72 Score=38.87 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNF 118 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~ 118 (287)
|+.+|.-||..++.....|..-...|.+.++.-.+-......|++. +..+++++..||.|+..-+.-
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r-------~~~deEr~~~lE~qLkeak~~------ 67 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR-------AQKDEEKMEIQEIQLKEAKHI------ 67 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccHHHHHHHHHHHHHHHHH------
Confidence 4567777777777777777777777777777777777776666665 556777888888887755432
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEK-------MSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek-------~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
|.+|+.|+++.+.|+.- .+.-...--.+|..+|.-|+++
T Consensus 68 --------aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 68 --------AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 3333333345555666555543
No 24
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=93.67 E-value=0.77 Score=40.19 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038837 43 IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHN 122 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~ 122 (287)
+++|+|.|+..- ..-+..++..+|.|++|++.-++ -+.+-+..++.+.+..+
T Consensus 70 lTqL~nrL~~wl-------sQ~em~~qks~EFSD~~qTaL~e---------------------AQ~AtD~y~~Ainny~~ 121 (201)
T 3u0c_A 70 LTALTNKITAWK-------SQQQARQQKNLEFSDKINTLLSE---------------------TEGLTRDYEKQINKLKN 121 (201)
T ss_dssp GHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhhhH
Confidence 456777777643 44455588889999998877665 56677888888999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
..+++.++|+|++.+..+|..|+--.++ +.++-.-|--|-+
T Consensus 122 Ads~~~~lekKvn~aq~kLs~L~P~dP~-Y~K~~~~~~~~~~ 162 (201)
T 3u0c_A 122 ADSKIKDLENKINQIQTRLSELDPESPE-KKKLSREEIQLTI 162 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCc-cccccHHHHhhhh
Confidence 9999999999999999999988765544 4443333333333
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.40 E-value=0.58 Score=39.03 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=25.3
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
+.....+|..+..|+++||.....+..++.+++++++.|++++.....++..||
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.04 E-value=1.8 Score=51.57 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=8.1
Q ss_pred HhhhhcCchhhHHHHhHHhHHH
Q 038837 53 SIRKVNGKSNYIEERDKLVDDM 74 (287)
Q Consensus 53 ~~qel~~Kd~~l~e~Ek~i~ek 74 (287)
..++|..+.-.|+++.+..+++
T Consensus 1939 l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1939 LQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.99 E-value=1.9 Score=51.43 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
+++..+.+++++.+.+....+++..+.|++++.|..+.+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.86 E-value=1.6 Score=33.61 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLL 109 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L 109 (287)
..||.+|+.+...=++|++.++..-. .+.....-..+=-..-++.++++..|++.--++-=.-.+||.+|+.|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36888888888888899988887542 22222222222223446788888888777544444457888888888
Q ss_pred HHHHhh
Q 038837 110 WAASRK 115 (287)
Q Consensus 110 ~~elek 115 (287)
+.|+.=
T Consensus 76 ~eEl~f 81 (86)
T 3swk_A 76 QEEIAF 81 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.84 E-value=1.1 Score=38.43 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLET 48 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES 48 (287)
++|.+|...+.+|..||+
T Consensus 24 ~~R~el~~~~~ri~~lE~ 41 (154)
T 2ocy_A 24 KSLKTIASQKAAIENYNQ 41 (154)
T ss_dssp HHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.42 E-value=0.5 Score=36.53 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=49.4
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKAL 128 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~ 128 (287)
+.+.++|.-|+..-..|+.|+-|++-||..+......+.++....+.|..+.+....+...+++|..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999997666666666666666666666666666666666665543
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.34 E-value=3.7 Score=33.26 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKN 116 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekq 116 (287)
..|+.++.+|+..+++-. ...+..-.+-...|.+||.|++.|. ..-+.|+..+|+.
T Consensus 6 rdL~~~~~~L~~E~e~~k----------~K~~~~~~e~~~~~~~Lq~El~~lr--------------~~~~~l~~~iReL 61 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALK----------EKLEHQYAQSYKQVSVLEDDLSQTR--------------AIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 455666666655555522 1122333444455666666655542 2333334444444
Q ss_pred hhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 117 NFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 117 n~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-..-+.||-.+.-+--.++++.+|+.+.
T Consensus 62 Eq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 62 EQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444445555555555555555555543
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.34 E-value=0.66 Score=46.64 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
||-+....+.+|+.-=+.+.-++.+.++|..+||+||=+..+
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455444455666888889999999999988774
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.27 E-value=1.1 Score=33.79 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred hhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 116 NNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 116 qn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
...++++...+|..++.++.+.....++.+.-...-.++|+.+|.=|..+++++..++..
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666666666666666677777889999999999888888877654
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=91.69 E-value=1.6 Score=42.16 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 038837 140 QVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 140 klek~~ki~~EQ~~qIqk~E~Al 162 (287)
.+.-|+....+|..+||+||-+.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777788888887766
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.65 E-value=1.2 Score=37.07 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
.+.++.++++++..|+.++....-+.+.++....+..+++.+|..++.+++.-..+
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777777777777777777777777766654443
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.33 E-value=1.9 Score=34.83 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 78 IHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 78 I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
-+++++++..|++.--++-=.-.+||.+|+.|+.|+.
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666654432222223556666666665554
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.31 E-value=1.5 Score=35.52 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=57.2
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhcc--ch--hHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDD--SS--RAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~--s~--~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
||.+++.-.+...|..|++++|.. .+ .+...+..|++++..|...-+.....+--||-.--|-|..-...++-|+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 566777778888888888888332 22 23345788888888888888888888777777777777777777777776
Q ss_pred Hhh
Q 038837 144 MSE 146 (287)
Q Consensus 144 ~~k 146 (287)
++.
T Consensus 82 ~E~ 84 (111)
T 2v66_B 82 FEQ 84 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.01 E-value=7.2 Score=33.74 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 38 DAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNN 117 (287)
Q Consensus 38 qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn 117 (287)
++...++++|....|.- +.+..++.--.........||+.++.=+.+-....+-+.+|+-.|..|..|++...
T Consensus 38 El~k~~~~~E~~~rELq-------~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQ-------ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443322 33344444444455666666666665555555666667888888888888887777
Q ss_pred hhhhhHH
Q 038837 118 FDIHNLE 124 (287)
Q Consensus 118 ~~~~~LE 124 (287)
.....++
T Consensus 111 ~~~~k~~ 117 (168)
T 3o0z_A 111 HNLEKVE 117 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6644443
No 39
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.95 E-value=5.5 Score=32.29 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred hhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 117 NFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 117 n~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
-.....|-++=.+.|.++.+++.+++..+..|.+--..-+++|+=.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555567778888888888888887776666666665533
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.89 E-value=1.4 Score=34.99 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEES 53 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~ 53 (287)
.|+.+++.||-+|.+||+.....
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~ 24 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDR 24 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhh
Confidence 35667888888888888877773
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.71 E-value=8.7 Score=32.67 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccch-------hHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSS-------RAEERLNALEE 104 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~-------~aee~i~eLEk 104 (287)
+..+|+..-.+...-|+.+.+...+|+.=+.+++-+|-.-..-+.+-..++..|..|...-- .++.++.-||+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555566666655555555555556666655522222 24444666666
Q ss_pred HHHHHHHHHhhhhhhhhhHH
Q 038837 105 EIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LE 124 (287)
.|+.|..++.....+...+.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~ 125 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554444443
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.34 E-value=4.8 Score=31.99 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV-EKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl-ek~~ki~~EQ~~qIqk~E~ 160 (287)
.+.+....+.++..|..++...+......|+.....+.-|++|+..| +...+++.+-++.--.+|.
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~ 83 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEI 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445557778888888888888888888888888888888888888 6677777665544434443
No 43
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.85 E-value=1.3 Score=36.00 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
...+..||.++..++.+...|..+-.
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34467777777777777777766644
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.37 E-value=4 Score=38.76 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038837 38 DAKLKIAGLETMLEESI 54 (287)
Q Consensus 38 qLk~kIa~LES~i~e~~ 54 (287)
++..|-..||-.++..-
T Consensus 364 ~l~~~~~~le~~~~~~~ 380 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGR 380 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444544444443
No 45
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.18 E-value=1.1 Score=30.87 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.0
Q ss_pred hHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 71 VDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
+...+..++||++|-+.||+...+-..-|.-||+++-.|.+.++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 34444677888888888877777777778888888888877654
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.90 E-value=0.78 Score=32.51 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=29.0
Q ss_pred cccCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 21 TSQNQQ-HSQQHLIAELQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 21 ~s~~~~-~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~ 58 (287)
++..|+ +.-.+|+.|+++|+.|+..|...+++...+|.
T Consensus 12 G~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 12 GAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455 45599999999999999999999999876654
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.61 E-value=1.2 Score=36.24 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
...+..||.++..++.++..|..+-.
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777766644
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.58 E-value=4.6 Score=32.62 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLE 135 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~ 135 (287)
+.+.+.+|--+|+.|..+++.+...+.+||....|+|.+..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34446777777777777777777777777777777777653
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.41 E-value=2.8 Score=42.21 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHh
Q 038837 104 EEIRLLWAASRKNNFDIHNLES 125 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEs 125 (287)
.+++.|++-|++|..++..||.
T Consensus 131 snIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777764
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.07 E-value=1.4 Score=33.44 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=42.9
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
+-..+|+|..+.|-|+.-..--++.+.+++.+||.+|..+.+.++.-..++
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888899999999999999999999999999999999887655544
No 51
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=85.90 E-value=11 Score=37.35 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=30.0
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
||.+-.....+|.+-=..+.-++.+..+|..+||+||-+..+
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554466677889999999999999998874
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.69 E-value=11 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 140 QVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 140 klek~~ki~~EQ~~qIqk~E~Alk 163 (287)
.+..++.+.+....+|+++|.++.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444456677888877765
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.53 E-value=3.8 Score=33.29 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRL 134 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv 134 (287)
.+.+.+|--+|+.|..+++.+...+.+||....|+|.+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344666666666666666666666677777777776654
No 54
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.95 E-value=3.6 Score=34.55 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=36.0
Q ss_pred hhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 62 NYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 62 ~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
...+-+|+.-..-..+|..|+..+.-.+.-.-+++.+..+....+-.+..+++.-.......|++..+.|..+..++..+
T Consensus 38 R~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 38 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333444444444444444445544444444444444444444444444444
Q ss_pred HHH
Q 038837 142 EKM 144 (287)
Q Consensus 142 ek~ 144 (287)
..+
T Consensus 118 KsL 120 (147)
T 2b9c_A 118 KSL 120 (147)
T ss_dssp HHH
T ss_pred Hhh
Confidence 333
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=84.84 E-value=5 Score=31.00 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hcc----chhHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDD----SSRAEERLNALEE 104 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~----s~~aee~i~eLEk 104 (287)
+.+.+++++++.++..|.+.+.....+++.=+..+.+++.+ -..-... ..| ..+.++=+..|++
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l-----------~~d~~vy~~iG~vfv~~~~~ea~~~L~~ 77 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL-----------PDDAVVYKTVGTLIVKTTKDKAVAELKE 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------CTTCCEEEEETTEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCCcHhHHHhhHHHhhccHHHHHHHHHH
Confidence 45666777777777777776666443332222333332211 1110011 223 2234555677777
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHH
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDAEDRLEE 136 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dAEkkv~e 136 (287)
.++.+..++.+...+...++....+.++++.+
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666555555555544443
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=84.25 E-value=8.6 Score=37.96 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHH
Q 038837 129 DAEDRLEEVSLQVEKMSEIVTEQ 151 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~EQ 151 (287)
..+..++.++.|+.+++.....|
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666655554443
No 57
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=83.50 E-value=0.66 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 50 LEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 50 i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.++..+.++.||+-|.++|..++++...|..|+++++..
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778899999999999999999999888887644
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.08 E-value=6.7 Score=31.98 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
..|++|+..|..|-..++.. ..+....|..+...|..|++|++--+.-. ++-..+.+ +++.-..++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l----------~~E~q~~v~ql~~~i~~Le~eL~e~r~~~---q~a~~e~e-~Lr~e~~~l 80 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM----------KTESQRVVLQLKGHVSELEADLAEQQHLR---QQAADDCE-FLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHH
Confidence 45677777777776666553 34556777777778888888765332110 00011111 122222345
Q ss_pred hhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 114 RKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 114 ekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
++.+.+.+....++.++|+|-+.-..+..||
T Consensus 81 ~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KL 111 (120)
T 3i00_A 81 RRQREDTEKAQRSLSEIERKAQANEQRYSKL 111 (120)
T ss_dssp HTTCC--------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666667777665544444443
No 59
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=83.06 E-value=1.6 Score=33.07 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
=+.++..++.|.+ +|++||..|..++..+.-+++.-..|-.||=|+
T Consensus 13 ~~~~~~~l~~Lr~-------eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 13 DDALLNTLAILQK-------ELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 3455556666654 455588999999988888888877777777665
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.66 E-value=13 Score=28.56 Aligned_cols=25 Identities=12% Similarity=-0.102 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+...+.++..+...+...+.+...+
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444433
No 61
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=80.87 E-value=22 Score=29.29 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
++..++.+-+.|+.+.-.|...+.... ....+++..+++++.+...|+..+..+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~~~~~~~-------~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAMEVAGRDF-------KRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666654444322 223445555566666666666655554
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=80.64 E-value=8.1 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRL 134 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv 134 (287)
.++=...|++.++.+..++.+...+...++....+.++++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444667777777777666666666655555555544444
No 63
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=80.11 E-value=13 Score=33.83 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHhhcccccchhcccCCcccCCcc
Q 038837 188 KDFSEKHLPKLTGMLVPYLPGKGS 211 (287)
Q Consensus 188 ~~~~~ph~~kv~~~~~py~~~~~~ 211 (287)
++-+..|+..+.+.+.||.+..+.
T Consensus 127 r~k~~~~leeLr~~l~P~ae~~~~ 150 (273)
T 3s84_A 127 KVKIDQTVEELRRSLAPYAQDTQE 150 (273)
T ss_dssp HHHHHHHHHHHHHHHGGGCSSCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445556666666666676655443
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.03 E-value=13 Score=36.05 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
.+||.++.-|+..++.|--++..|+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444443
No 65
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.80 E-value=11 Score=31.44 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETM---LEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIR 107 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~---i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe 107 (287)
..+.+|...+.+|..||+. +++...+++ .....+..|..++.--+..-..+|.....++.+|+
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~--------------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 77 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELS--------------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 77 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777662 222222222 22223333444444334444555666666666666
Q ss_pred HHHHHH
Q 038837 108 LLWAAS 113 (287)
Q Consensus 108 ~L~~el 113 (287)
.|-..|
T Consensus 78 ~LTasL 83 (135)
T 2e7s_A 78 DLTASL 83 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666444
No 66
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=79.71 E-value=22 Score=28.54 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=43.3
Q ss_pred HhHHhHHHhhhHHHHHHHHhhhhccchhHHHH---HHHHHHHHHHHHHHHhhhhhh----hhhHHhhhHhHHHHHHHHHH
Q 038837 67 RDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER---LNALEEEIRLLWAASRKNNFD----IHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 67 ~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~---i~eLEkQVe~L~~elekqn~~----~~~LEsrA~dAEkkv~eL~s 139 (287)
.|--|+|.-.+|-+.++||+-|+.-..+..-+ +...=.=|-..--++-.+-.+ ..++-+.-.|||+||+|+-+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L~dDAed~~~~~~~ 83 (107)
T 2wps_A 4 IEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMKQIEDKIEEILS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777664332222211 111111111111122222222 23344556689999999999
Q ss_pred HHHHHhhhhHHHH
Q 038837 140 QVEKMSEIVTEQW 152 (287)
Q Consensus 140 klek~~ki~~EQ~ 152 (287)
|.=+++.-+.--|
T Consensus 84 ~~~~~~~~~~~~~ 96 (107)
T 2wps_A 84 KIYHIENEIARIK 96 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888776555433
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.85 E-value=16 Score=29.25 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
..+|..+..|++++..-.-.+. |.|.+++.|.-++.=+.+.-+
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~-------dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARL-------DLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655444433 445556666666555554433
No 68
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=78.28 E-value=35 Score=29.94 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc--chhHHHH---HHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD--SSRAEER---LNALE 103 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~--s~~aee~---i~eLE 103 (287)
...+...++.|+.+-..|.....++...|..-- .+.+....+++...=|...+..+.+...+ ...++.. -.+++
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~ 265 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIK 265 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHH
Confidence 345666677777777777766666665555322 12333444445555555555555543211 2223333 23444
Q ss_pred HHHHHHHHHHhhhhhhhhhHHh----hhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLES----KALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEs----rA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
.+|+.-...+...+..+..|=. -+.+...++..|+.+-+.+.....+-|.+.|
T Consensus 266 ~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~w~~l~~~w~~R~~~L~ 322 (323)
T 3edv_A 266 AEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444443333321 1346778888999998888888888777665
No 69
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=76.84 E-value=5.5 Score=30.70 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
+.+..++.+.+....+.+++..|+|++-++|-.+++++.+-..|
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888889999988888888877665444
No 70
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=76.82 E-value=26 Score=27.73 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh------hccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038837 45 GLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI------KDDSSRAEERLNALEEEIRLLWAASRKNNF 118 (287)
Q Consensus 45 ~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL------kk~s~~aee~i~eLEkQVe~L~~elekqn~ 118 (287)
.|+..++-+.+..+.-...+.+..........++..|.+..... ..+++-+-..+.....=+..|...+..+..
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555556666666666666654432 111222333455666667788888888888
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
.....+.....+...+.+-..+++.+++.-+-+....+..+.
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~~ 130 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888899999999998888877665555554443
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.69 E-value=20 Score=30.59 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
...++..|..|+..+++|+..|.... +.++++.+.+...-+.+.+|+-+++.+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLe-------eel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLK-------EVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666644 334444444444445555565555555
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=75.98 E-value=9.6 Score=27.83 Aligned_cols=42 Identities=7% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhh
Q 038837 48 TMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIK 89 (287)
Q Consensus 48 S~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk 89 (287)
+.+++.+.....-.+.+......|.|.-..|++|+.||+++|
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444445555566666777777777777777764
No 73
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.00 E-value=24 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDK 69 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek 69 (287)
+.+++.+++.++..+.+.+.....+++.=+..+.+++.
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555444333333344444443
No 74
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.79 E-value=4 Score=28.33 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=16.2
Q ss_pred HHhHHhHHHhhhHHHHHHHHhh
Q 038837 66 ERDKLVDDMTNKIHHLQSLLSK 87 (287)
Q Consensus 66 e~Ek~i~eks~kI~sLqsEi~s 87 (287)
.+|++|....+.|+.|++|+.|
T Consensus 28 nlekiianlrdeiarlenevas 49 (52)
T 3he5_B 28 NLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888888888888888754
No 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.48 E-value=39 Score=28.68 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 35 ELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
.|-+.=.+.+.||..+....++|.+-...+.++|..-. .+..|..+ ....+.++..|..++.
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~----~~~~l~~~--------------~~~~~~e~~~L~~~l~ 68 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKE----DYNTLKRE--------------LSDRDDEVKRLREDIA 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH----HHHHHHTH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--------------HhhhhHHHHHHHHHHH
Confidence 34444456666777776666666555455555553321 12223222 2235566677777777
Q ss_pred hhhhhhhhHHhhhHhHHHHHHHHHHHH-HHHhhhhHHHH-------HHHHHHHHHHHHHHHHH
Q 038837 115 KNNFDIHNLESKALDAEDRLEEVSLQV-EKMSEIVTEQW-------IQIQHLEQALHMAELRA 169 (287)
Q Consensus 115 kqn~~~~~LEsrA~dAEkkv~eL~skl-ek~~ki~~EQ~-------~qIqk~E~Alk~ae~~~ 169 (287)
.-+......|+.-...+.-|++|+.-| +...+++.+-+ ++..+++..++-++..+
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l 131 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLL 131 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777 55555544333 33344445555444433
No 76
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=73.84 E-value=31 Score=27.22 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
+.+|+..++.-=+.++.-.--+--||+|...+||--.-|..+|..
T Consensus 48 i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 48 LRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 444444444333333333333334455555555444444444433
No 77
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.30 E-value=22 Score=34.45 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
++.+.|.+++.+|..-+-.+...+..|+......+.+++.|
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 33555666666665555444444444444443333333333
No 78
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=72.97 E-value=10 Score=31.31 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 038837 129 DAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki 147 (287)
++.+++.+|..++.++++-
T Consensus 65 eL~~ki~eL~~kvA~le~e 83 (125)
T 2pms_C 65 ELSDKIDELDAEIAKLEDQ 83 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.31 E-value=21 Score=29.03 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh---hHHHH
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI---VTEQW 152 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki---~~EQ~ 152 (287)
..|..|.++++++ ...+..-|..|+.+|-.|..++..++..+. .|-.-.+.|-..++.+... ++.=-
T Consensus 22 reie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q-------~a~~e~e~Lr~e~~~l~~~~~~~~~~q 91 (120)
T 3i00_A 22 REISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQ-------QAADDCEFLRAELDELRRQREDTEKAQ 91 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4455555555555 223334478888888888888888875433 1111222333333332222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038837 153 IQIQHLEQALHMAELRAANVQ 173 (287)
Q Consensus 153 ~qIqk~E~Alk~ae~~~~k~q 173 (287)
.++...|..-+.+|++-.|.+
T Consensus 92 ~~~~e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 92 RSLSEIERKAQANEQRYSKLK 112 (120)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555565555544
No 80
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=71.93 E-value=17 Score=29.44 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
.+++.|+.++...|-.+.. |..+|.-|..++.... .+-++|.-|+-||+.-..|-
T Consensus 24 ~ei~~L~~~L~~AEeaL~~---------------------Kq~~idelk~ei~q~~----~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVA---------------------KQELIDKLKEEAEQHK----IVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH----HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4677777777666655555 2233333333333221 11155777777777777777
Q ss_pred hhhhhhhhhHHhh
Q 038837 114 RKNNFDIHNLESK 126 (287)
Q Consensus 114 ekqn~~~~~LEsr 126 (287)
..-+...+.+-.+
T Consensus 79 ~aERadREkl~~e 91 (110)
T 2v4h_A 79 QAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhH
Confidence 6666665555433
No 81
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=71.59 E-value=31 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
++.+..+++++..|+..+++......-||
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele 41 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELE 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333
No 82
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=71.59 E-value=47 Score=28.31 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHHHHhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHH
Q 038837 3 AAAHLTLLLVILFWSFTLTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQ 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLq 82 (287)
++-+||+++.-|+.+.. + .-|+||+++++..-++|+.+.+ ..|++..|.+.- |
T Consensus 2 ~~g~LTlLlG~l~~l~G-----------~--~Sl~qL~nrla~~~am~~sqqq----------~~eqlS~eFqta---l- 54 (158)
T 3tul_A 2 SEGQLTLLLGKLMTLLG-----------D--VSLSQLESRLAVWQAMIESQKE----------MGIQVSKEFQTA---L- 54 (158)
T ss_dssp -CCTHHHHHHHHHHHHH-----------H--HTHHHHHHHHHHHHHHHHHHHH----------HTC--CCTHHHH---H-
T ss_pred CcchHHHHHHHHHHHHh-----------h--hhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH---H-
Confidence 34567766655544331 1 4578899999999888887542 234444444311 1
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 83 SLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 83 sEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
++-+..-+..++.+.+..+-.+...++++|++....+|..|.--.++
T Consensus 55 ---------------------~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~ 101 (158)
T 3tul_A 55 ---------------------GEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 101 (158)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred ---------------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 13455667777778888888889999999999999999887766554
No 83
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.05 E-value=33 Score=26.29 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.1
Q ss_pred hhhhHH
Q 038837 119 DIHNLE 124 (287)
Q Consensus 119 ~~~~LE 124 (287)
+...|.
T Consensus 79 ~i~~l~ 84 (112)
T 1l8d_A 79 TLAKLI 84 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 84
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=70.83 E-value=21 Score=27.72 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc-chhHH---HHHHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD-SSRAE---ERLNALEEEIRLLWAA 112 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~-s~~ae---e~i~eLEkQVe~L~~e 112 (287)
+...+.|.+|++.+..++.. +-.....+++..+++.+..|..|..-|....+. ..+.. .-+.++++|+..|+.+
T Consensus 13 ~D~~~ql~~l~~~~~~~~~~--~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 13 KDTKEQLNRINNYITRHNTA--GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666654331 224778888888888888888888888776333 22111 1277788887777766
Q ss_pred H
Q 038837 113 S 113 (287)
Q Consensus 113 l 113 (287)
+
T Consensus 91 ~ 91 (95)
T 2c5k_T 91 F 91 (95)
T ss_dssp H
T ss_pred H
Confidence 5
No 85
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.70 E-value=3.4 Score=41.34 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=27.5
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHH---------------------HHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEE---------------------RLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee---------------------~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
|+.-.|+...+..++.+.......-..+++ +..++|...+.|...-+++-.++..|+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~ 413 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDE 413 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555666666666666665433222222222 24666777777777778888888888888
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 127 ALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQR 174 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ 174 (287)
+.+++..+..|....+.-+.-...-...++...+++.-|+++++.+-.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 414 IRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888777777665554444345566666666666666665543
No 86
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.09 E-value=21 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIR 55 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~q 55 (287)
..+..+++.+..++..|+..+.+...
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666543
No 87
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=69.35 E-value=14 Score=26.71 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 109 LWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
+..|++.||.-+..++.++..+..|+..-+.+|.+
T Consensus 29 mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 29 TGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45899999999999999999999999888887765
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.23 E-value=35 Score=28.02 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCc
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGK 60 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~K 60 (287)
++.+..-..||.++..--+-|..+
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~ 44 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDV 44 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345666667777776654333333
No 89
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.02 E-value=7.4 Score=29.38 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKV 57 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel 57 (287)
..+...|.+|-.|++-+|.-|++.++.+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v 37 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEAL 37 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888887777777433
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.90 E-value=45 Score=27.81 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH-HHHhhhhHHHHH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV-EKMSEIVTEQWI 153 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl-ek~~ki~~EQ~~ 153 (287)
.+.++..|..++..-+......|+.....+.-|++|+..| +...+++.+-++
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~ 96 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777889999999999999999999999999999988 666666665443
No 91
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.56 E-value=24 Score=24.43 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHH
Q 038837 103 EEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTE 150 (287)
Q Consensus 103 EkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~E 150 (287)
.+++..+...++..+.+.....++-..+..++..+...|+.+..-..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666665554444
No 92
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.08 E-value=13 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=25.2
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHH
Q 038837 121 HNLESKALDAEDRLEEVSLQVEKMSEIVTEQW 152 (287)
Q Consensus 121 ~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~ 152 (287)
..||+|+.+.|.+..+|..++-.++.-|.=-+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 36889999999999999998888877665433
No 93
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.04 E-value=25 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~ 58 (287)
+....+|++|-.+|..||..|++....+.
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666666655554443
No 94
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.91 E-value=48 Score=31.12 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAAS 113 (287)
Q Consensus 99 i~eLEkQVe~L~~el 113 (287)
...|++|+..+++.+
T Consensus 399 ~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 399 THLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH
Confidence 455566665555443
No 95
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.81 E-value=28 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHh
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLES 125 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEs 125 (287)
..++.+++|+.|+++.+.....||.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777777777777776666653
No 96
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=66.81 E-value=4.8 Score=36.47 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEE 66 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e 66 (287)
|-+.++++..+|+.||..+++.+|....+...|..
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ 38 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKR 38 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666667777777777666544444333333
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=66.72 E-value=19 Score=27.16 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA 127 (287)
+++++..|...+..|..|+..+....--+. +-.++.+|-.+...+..+++..-..=..||+++
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555566666666666666666544311111 234567777777777777776655544555443
No 98
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.31 E-value=39 Score=26.80 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.+.....+|..+|..++....+ +.+..-..+..+.+.+.++-..+..|++.+++.
T Consensus 26 e~e~~k~eL~~~~~~~~~~~~~---k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~ 80 (107)
T 2no2_A 26 DLEREKKELEDSLERISDQGQR---KTQEQLEVLESLKQELATSQRELQVLQGSLETS 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554422222 223344444444445555555555555555444
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.13 E-value=17 Score=27.33 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+.+|+..+++--.+|+.....+..+|.+..+-|.-+.+|.+++++.+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5666666666666666666667777777777777777777777776543
No 100
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=65.12 E-value=40 Score=24.99 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHh-------hhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLES-------KALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMA 165 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEs-------rA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~a 165 (287)
...++++|..-+..++..+..+..|=. .+..-..++.+|+.+-+.+.....+.. ++|+.||..+
T Consensus 45 h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~---~~L~~aL~~~ 115 (118)
T 3uul_A 45 HETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQ---SRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 355666666666666666666655522 123355677777777777776666543 4566666543
No 101
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=64.85 E-value=65 Score=31.27 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
-+.|-+++.++..-+..+...+..|++.+.....+++.|..+|..
T Consensus 86 Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 86 SRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777778777887777777655555555555444443
No 102
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=63.77 E-value=14 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQ 140 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sk 140 (287)
.|+..|.++---|.+|++++......||..+.+-..=+..|.++
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 45777888888888999999999999999998887776666554
No 103
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.14 E-value=14 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 106 IRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 106 Ve~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-.....|++.||.-+..++..+..+..++...+.++.++
T Consensus 25 a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 25 GQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344558888899988888888888888888888777665
No 104
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=63.04 E-value=13 Score=34.98 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
+..|.+++.+|...+-.+..++..|+......+.++++|..+|
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 105
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.93 E-value=49 Score=26.72 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc----chh---HHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD----SSR---AEERLNA 101 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~----s~~---aee~i~e 101 (287)
-..|...|..+-.-++.=...|++..+++-.++..++ .|.-|..-++.-+.+ -.| ..+...+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE-----------~I~vLkaQv~IY~~DF~aERadREkl~~eKe~ 94 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME-----------TVPVLKAQADIYKADFQAERHAREKLVEKKEY 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHccchhhHHHHHhHHHH
Confidence 3678888887777777777778877765555444442 244444443322221 111 1122577
Q ss_pred HHHHHHHHHHHHhh
Q 038837 102 LEEEIRLLWAASRK 115 (287)
Q Consensus 102 LEkQVe~L~~elek 115 (287)
|+.|+..|+..+.+
T Consensus 95 L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 95 LQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 78888887776544
No 106
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=62.48 E-value=25 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=19.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038837 125 SKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHL 158 (287)
Q Consensus 125 srA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~ 158 (287)
.||.-||+.|..|...++++++-..-++.+...+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4666666666666666666665555444444333
No 107
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.47 E-value=4.4 Score=26.52 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=18.8
Q ss_pred HhhhHHHHHHHHhhhhccchhHHHHHHHH
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAEERLNAL 102 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~aee~i~eL 102 (287)
|..|+++.+.+|+-||+.....+++|..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 56788888888887765554444444433
No 108
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=62.09 E-value=79 Score=27.43 Aligned_cols=120 Identities=7% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhHH---HHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETMLEESIRKVNGKSNYIE---ERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNALEEEIRLLWAA 112 (287)
Q Consensus 37 ~qLk~kIa~LES~i~e~~qel~~Kd~~l~---e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eLEkQVe~L~~e 112 (287)
+.++.++..|.+.++........+...|. +......+...-..=|......+ ..+.+.+.+.+..|-++.+.+..+
T Consensus 184 ~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~~~qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~e 263 (322)
T 1u4q_A 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETD 263 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhHHhhhH-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 113 SRKNNFDIHNLESKAL-----------DAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 113 lekqn~~~~~LEsrA~-----------dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
++........+...+. ....++..|+.+.+.+.....+.+.+++
T Consensus 264 l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L~ 318 (322)
T 1u4q_A 264 FTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 318 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 109
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=61.79 E-value=21 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 77 KIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 77 kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
.+..+..+++.+...+..+.+.|..||.+|..|.
T Consensus 28 eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 28 EVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4444455555443333334555666666666554
No 110
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=60.83 E-value=68 Score=26.28 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhh
Q 038837 105 EIRLLWAASRKNNF 118 (287)
Q Consensus 105 QVe~L~~elekqn~ 118 (287)
+|+.|++++.+.|.
T Consensus 72 ~vqeLqgEI~~Lnq 85 (121)
T 3mq7_A 72 KVEELEGEITTLNH 85 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544444
No 111
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=60.56 E-value=36 Score=32.06 Aligned_cols=81 Identities=7% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHH---HHHHHHHHHHHHH
Q 038837 36 LQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEER---LNALEEEIRLLWA 111 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~---i~eLEkQVe~L~~ 111 (287)
.+.|+.++..+++.|.+..+++.+|...+.++++.++.-. ... ++..++.-.+ +.|+--+|+.|+-
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 373 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEE----------ENTHPRERVQLLGKRQVLQEALQGLQVALC 373 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHSCTTCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCCcchHHHHHhHHhhHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999987765432 112 2222222222 4555666777766
Q ss_pred HHhhhhhhhhhHHhh
Q 038837 112 ASRKNNFDIHNLESK 126 (287)
Q Consensus 112 elekqn~~~~~LEsr 126 (287)
.-.+....++.|++.
T Consensus 374 ~~~~~~~q~~~~~~~ 388 (406)
T 4dyl_A 374 SQAKLQAQQELLQTK 388 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555433
No 112
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=59.10 E-value=22 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=10.3
Q ss_pred hHHhhhHhHHHHHHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL~skle 142 (287)
.||+.....|||+..|.+|+.
T Consensus 24 aleselqalekklaalksklq 44 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554
No 113
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=58.96 E-value=36 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.....|++.||.-+..++..+..+..++...+.++.++
T Consensus 27 ~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 27 LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34458888999998888888888888888888877764
No 114
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=58.89 E-value=18 Score=30.69 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
.-||.....|.++++..+..+..+++.....+....+|+.++.+++
T Consensus 62 ~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455566777777777777777777776666666666776666553
No 115
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=58.81 E-value=22 Score=30.56 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 75 TNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 75 s~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
..+|...+.|+..|-.....++.+|.+|-+|+..|..+++..+.+
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777774445567788999999999999999887765
No 116
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.75 E-value=41 Score=27.45 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=29.0
Q ss_pred HhhhHHHHHHHHhhhhccchhHH---HHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAE---ERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~ae---e~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+.++|..| |++|..-.+..+ +++.+|++|-+....+++....+++.+
T Consensus 69 k~kqIe~L---IdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 69 KTRQINKL---IDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp HHHHHHHH---HHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666 445532222222 448899998888888887776665544
No 117
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.32 E-value=36 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred HhhhHHHHHHHHhhhhccchhHH---HHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAE---ERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~ae---e~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+.++|..| |++|..-.+..+ +++.+|++|-+....+++....+++.+
T Consensus 69 kakqIe~L---IdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~l 118 (151)
T 1yke_B 69 KTRQINKL---IDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (151)
T ss_dssp HHHHHHHH---HHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666665 445532222223 448888888888888777766654433
No 118
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.93 E-value=17 Score=35.28 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 112 ASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 112 elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
.++++..++..+|+.....+..+..|...++. +..+|+.+++.+
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~-------~~~~i~~l~~~i 128 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIM-------NSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-------hHHHHHHHHHHH
Confidence 34455556666777666666666666666654 445666655543
No 119
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=57.48 E-value=1.1e+02 Score=30.75 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
++.-||+=++.+.+-++..|.+...|
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~~L 172 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMRRL 172 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35555555555555555555555444
No 120
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.97 E-value=56 Score=24.04 Aligned_cols=61 Identities=8% Similarity=0.000 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHh-------hhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLES-------KALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEs-------rA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
.+++.+|..-+..++..+..+..|=. .+..-..++.+|+.+-+.+.....+... +++.||.
T Consensus 46 ~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~---~Le~aL~ 113 (119)
T 3uun_A 46 EGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQS---NLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45555666666666666665555511 2334566777777777777777666443 4555554
No 121
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.67 E-value=41 Score=29.57 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 038837 104 EEIRLLW 110 (287)
Q Consensus 104 kQVe~L~ 110 (287)
+|++.|+
T Consensus 48 ~ql~sl~ 54 (190)
T 4emc_A 48 KQIDSLN 54 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.63 E-value=1.3e+02 Score=28.13 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 109 LWAASRKNNFDIHNLESKALDAEDRLEEVSL----QVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA~dAEkkv~eL~s----klek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
|++.|..-..+...+|..|+-+-.-|-.|-. |+.+-++-+.|+--+|.++++-|+-++.+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555444433332 333344556666666777777776665553
No 123
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=56.29 E-value=21 Score=28.56 Aligned_cols=47 Identities=6% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+|.+-...||+-+-+...++.-||.+....+.-+++|+.+|.++.|.
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcCc
Confidence 46667777888888888888889999999999999999999888654
No 124
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=55.81 E-value=38 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 108 LLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 108 ~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
....|++.||.-+..++..+..+..++...+.++.++-
T Consensus 47 ~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 47 DMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34588889999999998888888888888888887764
No 125
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=55.58 E-value=1.2e+02 Score=27.42 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=12.3
Q ss_pred hhchhhHHH-------HHHHHhhcccccchhcccCCcc
Q 038837 176 LMYARCTFL-------KFVKDFSEKHLPKLTGMLVPYL 206 (287)
Q Consensus 176 a~p~~~~f~-------k~~~~~~~ph~~kv~~~~~py~ 206 (287)
..|-...|. +=+++.++||...+.+-.+|+-
T Consensus 225 ~~p~~e~~~~~l~~~~e~l~~~l~~~~~~~~~~~~~~~ 262 (273)
T 3s84_A 225 VEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFLE 262 (273)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHhhHHHHHHHHHHHHHHHHHHhCcchhhHHhhhhHHH
Confidence 367665553 3447788888888888888765
No 126
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.97 E-value=32 Score=26.23 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHN 122 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~ 122 (287)
..|..+|..|.+.+|.++-+...
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444433
No 127
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=54.22 E-value=81 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e 52 (287)
+..+++|+.+=..|...+..
T Consensus 91 ~~~l~~L~~~w~~L~~~~~~ 110 (218)
T 3fb2_A 91 KQKLDILDQERADLEKAWVQ 110 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 128
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=54.15 E-value=38 Score=25.77 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=15.4
Q ss_pred HHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 038837 73 DMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRL 108 (287)
Q Consensus 73 eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~ 108 (287)
|.+..-..|+.|+.++......-+.++.+||++..+
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444456666666655555566666666666543
No 129
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=53.92 E-value=53 Score=29.53 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=6.7
Q ss_pred hHHhhhHhHHHHHHHH
Q 038837 122 NLESKALDAEDRLEEV 137 (287)
Q Consensus 122 ~LEsrA~dAEkkv~eL 137 (287)
.++.+..++|-++.+|
T Consensus 130 ~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 130 ALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhcccccccccchhhh
Confidence 3334444444444443
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.53 E-value=24 Score=25.31 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 038837 78 IHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 78 I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~el 113 (287)
+..|+.++..|......-..+|..|+.|+..|+.-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443334444455566666666665544
No 131
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.43 E-value=13 Score=27.59 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 102 LEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 102 LEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
+-.+++.+.+.+...-..+..||...++.+.-+.+|.+++.+.+.+..
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445778888888888888999999999999999999999999988875
No 132
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=53.25 E-value=24 Score=28.20 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhh
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEI 147 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki 147 (287)
+|.+-...||+-+-+...++.-||.+...-+.-+++|+.+|.++.|.
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 57777888888888888899999999999999999999999888554
No 133
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=53.16 E-value=73 Score=32.22 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHH-------HhhhHHHHHHHHhhhhccchhHHHHH
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDD-------MTNKIHHLQSLLSKIKDDSSRAEERL 99 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~e-------ks~kI~sLqsEi~sLkk~s~~aee~i 99 (287)
+....+...+++|+.+-..|...+.++.+.|..--....+.+.+..+ ...=|..-+..+.+...| .+.+.+
T Consensus 443 ~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g--~dl~~v 520 (863)
T 1sjj_A 443 YDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIV--HTIEEI 520 (863)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCC--SSSGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhh--ccHHHH
Confidence 33455566666677666677666666665555433333222222222 111122222222222111 122225
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH------------------HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDA------------------EDRLEEVSLQVEKMSEIVTEQWIQIQH 157 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dA------------------Ekkv~eL~sklek~~ki~~EQ~~qIqk 157 (287)
.+|.++.+.+..++.....+...+...+..+ ..+++.|+.+-+.+.....+-+.++++
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~ 596 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALME 596 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543333333222222 234667777777777777666555554
No 134
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.93 E-value=32 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
+++.+..+||++|+.|+.+++.-..+-..+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999988888766554433
No 135
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=52.57 E-value=28 Score=24.31 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
.||..|..||++|+.|..++.....+.
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 578889999999999998887665443
No 136
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=52.53 E-value=1e+02 Score=27.74 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.1
Q ss_pred HHHHHH
Q 038837 155 IQHLEQ 160 (287)
Q Consensus 155 Iqk~E~ 160 (287)
|.-+|.
T Consensus 228 ikAlEd 233 (242)
T 3c9i_A 228 TKAMED 233 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 137
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.44 E-value=25 Score=25.02 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAAS 113 (287)
Q Consensus 99 i~eLEkQVe~L~~el 113 (287)
|..|..++..|+.-+
T Consensus 46 i~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 46 IANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555666655443
No 138
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.25 E-value=91 Score=25.12 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQ 175 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~e 175 (287)
..-|..+++.|.+++++...++.-||.. ++.+-|.=.+-+.+-..+++..|+-|+-..-.-+.++..
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666655555555433 333333333334444555555566555444443344433
No 139
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=52.18 E-value=24 Score=32.55 Aligned_cols=42 Identities=17% Similarity=0.439 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhc
Q 038837 42 KIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKD 90 (287)
Q Consensus 42 kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk 90 (287)
++..|...|+. =|..+.+.|+-+++..++|.+|.+++..+|+
T Consensus 217 k~~~l~n~I~~-------V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 217 KMGEMNSKIKG-------VENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455444444 5577788889999999999999999988854
No 140
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=51.83 E-value=1.4e+02 Score=28.94 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 108 LLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 108 ~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
..-+...++-.+++.+|+-....+..+.+|...++ -...+|++|++.+..
T Consensus 81 ~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~-------~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 81 AATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYN-------SNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34444555666666666555555555555555443 334577777776653
No 141
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=50.80 E-value=31 Score=25.61 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhh
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIV 148 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~ 148 (287)
..-.....|++.||.=++.++..+..+..++...+.++.++-+.+
T Consensus 33 ~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 33 NMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455688999999999999999999999999998888876644
No 142
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=50.49 E-value=1e+02 Score=25.15 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=62.6
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHH
Q 038837 24 NQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALE 103 (287)
Q Consensus 24 ~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLE 103 (287)
+|.++...++..+++|+.+=..|...++++.+.|..= ..+........+...=|..-+..+.+. +.+++...+..|-
T Consensus 70 ~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~-l~l~~F~~~~~~~~~Wl~~~E~~l~~~--~~g~~~~~v~~ll 146 (214)
T 1s35_A 70 QTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC-LGFQEFQKDAKQAEAILSNQEYTLAHL--EPPDSLEAAEAGI 146 (214)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCSSHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHH
Confidence 3444556788888999999999998888888777531 224444444444444444333333332 2333455667777
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhH
Q 038837 104 EEIRLLWAASRKNNFDIHNLESKAL 128 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LEsrA~ 128 (287)
++-+.+..++.........|.+.|.
T Consensus 147 kkh~~f~~~l~~~~~~i~~l~~~a~ 171 (214)
T 1s35_A 147 RKFEDFLGSMENNRDKVLSPVDSGN 171 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777777777777666666655444
No 143
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.10 E-value=16 Score=28.96 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~ 86 (287)
|..--++|...+++-. .+++..|.+++.+|+.|++-..
T Consensus 34 Ls~tfarLc~~Vd~t~----------~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQ----------KHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp -CCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555543 3334444444455555544443
No 144
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=49.85 E-value=59 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Q 038837 76 NKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 76 ~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~ 110 (287)
..+..+..+++.++..+..+...+..||-.|..|.
T Consensus 26 ~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 26 REVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 34444555555554444444555555555555554
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=49.73 E-value=26 Score=32.06 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 33 IAELQDAKLKIAGLETMLE 51 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~ 51 (287)
..++..|+..++.|...+.
T Consensus 23 ~~~~~~~~~e~~~l~~~~~ 41 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLE 41 (251)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHhhh
Confidence 3566666666665555443
No 146
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=49.58 E-value=1e+02 Score=24.96 Aligned_cols=96 Identities=7% Similarity=0.049 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRL 108 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~ 108 (287)
...+...++.|+..-..|......+.+.|..=-. +.+...-..+...=|..-+..+.+- ..+++...+..|-++-+.
T Consensus 74 ~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-~~~f~~~~~e~~~Wl~~~e~~l~~~--~~g~~~~~v~~ll~~h~~ 150 (213)
T 1cun_A 74 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTLVASE--DYGDTLAAIQGLLKKHEA 150 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCC--CCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHHH
Confidence 3445555566666666665555554444432111 1222222333333333322222222 223345556666666666
Q ss_pred HHHHHhhhhhhhhhHHhhh
Q 038837 109 LWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA 127 (287)
+..++.........+-..+
T Consensus 151 ~~~el~~~~~~i~~l~~~~ 169 (213)
T 1cun_A 151 FETDFTVHKDRVNDVCANG 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555554444443
No 147
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.35 E-value=67 Score=25.28 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHH
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQ 140 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sk 140 (287)
|...|+.+..|...|.-|..++...+ ..-++|.-|+-||+.-+.|-..-+.+.+.+-.+-.+....+..|-.+
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~----~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHK----IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444445555555555544331 12266788888888888777777766666654444444444444433
No 148
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.17 E-value=28 Score=24.49 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 39 AKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
.+.++|+..|.- .|..++.+++..+.+.+.....|.+++
T Consensus 7 erNr~AA~k~R~--------rKk~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 7 ERNRAAASRSRQ--------KRKVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665541 134555556555555555555555443
No 149
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=49.15 E-value=1.4e+02 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQAL 162 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Al 162 (287)
++...|+.++..|...+++-...+...|. ..-.|=+.-|| |-|.+||.+.+.|
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~--~L~~KF~~lLN-----------eKK~KIR~lq~~L 198 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALET--DLYKRFILVLN-----------EKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----------hhHHHHHHHHHHH
Confidence 33455555555555555555555554442 22233333344 4477888877333
No 150
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=48.68 E-value=37 Score=30.67 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=24.9
Q ss_pred HhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038837 124 ESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 124 EsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~ 169 (287)
=+|+.++|.++.+|-..++.+.........+|+++|.-|.--+..+
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555566777776666444443
No 151
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.67 E-value=69 Score=24.22 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=11.0
Q ss_pred HhHHhHHHhhhHHHHHHHHhhh
Q 038837 67 RDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 67 ~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.++...+...+...|..+...|
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444
No 152
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.55 E-value=74 Score=24.61 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=32.2
Q ss_pred chhhHHHHhHHhHHHhhhHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHH
Q 038837 60 KSNYIEERDKLVDDMTNKIHHLQSLLSKIK-DDSSRAEERLNALEEEIRLLWAAS 113 (287)
Q Consensus 60 Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk-k~s~~aee~i~eLEkQVe~L~~el 113 (287)
|...|.+.+..+.|-..-|..+.-|+.++. ..-.....++.+-..++++|++++
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566666666666666666666666661 112233455677777777776665
No 153
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.10 E-value=26 Score=25.96 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=4.8
Q ss_pred hhhHHHHhHHhH
Q 038837 61 SNYIEERDKLVD 72 (287)
Q Consensus 61 d~~l~e~Ek~i~ 72 (287)
+.+|+++|..+.
T Consensus 28 ~~~i~~LE~~v~ 39 (70)
T 1gd2_E 28 EDHLKALETQVV 39 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 154
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.08 E-value=29 Score=25.74 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038837 99 LNALEEEIRLLWAASRK 115 (287)
Q Consensus 99 i~eLEkQVe~L~~elek 115 (287)
|.+||.+|..|......
T Consensus 31 i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 31 LKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 155
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=47.97 E-value=39 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~k 146 (287)
.+|.+-...||+-+-+...+++-+|.+....+.-+++|+.+|..+.+
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 35777788888888888899999999999999999999999988753
No 156
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.94 E-value=35 Score=30.68 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKV 57 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel 57 (287)
..+..++.+++..+.+++..++....++
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~a~~~~ 93 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVARKTAY 93 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777666544333
No 157
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.91 E-value=50 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038837 35 ELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 35 eL~qLk~kIa~LES~i~e~~ 54 (287)
||+.++...++||..|.+..
T Consensus 2 el~~l~~~~~sLE~~l~e~e 21 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREME 21 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67778888888887777643
No 158
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.81 E-value=2.3e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
.+||+++.-|+..+..|-.++..|.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq 138 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQ 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555554444443
No 159
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.57 E-value=35 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHh
Q 038837 33 IAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERD 68 (287)
Q Consensus 33 ~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~E 68 (287)
..+|+....-|+.|-+.....+++|..|+..|+.+.
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655554444444433
No 160
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.08 E-value=1.1e+02 Score=24.17 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 038837 99 LNALEEEIRL 108 (287)
Q Consensus 99 i~eLEkQVe~ 108 (287)
..+|+.+|+.
T Consensus 31 k~eL~~~~~~ 40 (107)
T 2no2_A 31 KKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 161
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.03 E-value=50 Score=22.47 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038837 78 IHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHN 122 (287)
Q Consensus 78 I~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~ 122 (287)
++.|.||+..||+..-.. +.+.+||.+.+.|.+.+-...++.+.
T Consensus 2 laalkselqalkkegfsp-eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSP-EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHTTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999995543333 34567777777777766665555443
No 162
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.73 E-value=90 Score=23.69 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=35.6
Q ss_pred HhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 70 LVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 70 ~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
.+......|++|...-+-|+.|+.--++-+..|+.+...|.+.++....+..-|+
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666777777777777777777777777766665554443
No 163
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=45.34 E-value=1e+02 Score=23.73 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIK-DDSSRAEERLNALEEEIRLLW 110 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLk-k~s~~aee~i~eLEkQVe~L~ 110 (287)
+..-.++++.+|.++-. ..-..|...|.+.+..+.|...-|..+.-|+.++. .--.....++..-..+++.|+
T Consensus 14 f~~l~~~i~~kl~~i~~------~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 14 FAVLTAEITSKIARVPR------LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp HHHHHHHHHHHHHHGGG------SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444566666665522 12245677788888888888888888888888872 223445566888888888888
Q ss_pred HHHhhhh
Q 038837 111 AASRKNN 117 (287)
Q Consensus 111 ~elekqn 117 (287)
+++++..
T Consensus 88 ~elk~~~ 94 (102)
T 1vcs_A 88 TDFKRSR 94 (102)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 164
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.31 E-value=26 Score=33.40 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNK 77 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~k 77 (287)
.++..++..|+.++..|+..|++...+++.-.+.+.+.|..-+..-+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444444444444333333333
No 165
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.27 E-value=38 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038837 36 LQDAKLKIAGLETMLEE 52 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e 52 (287)
..||...+++||..-+-
T Consensus 5 vaqlenevaslenenet 21 (49)
T 3he5_A 5 VAQLENEVASLENENET 21 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHH
Confidence 45777888888765444
No 166
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=45.05 E-value=31 Score=26.19 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 106 IRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 106 Ve~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-.....|++.||.-+..++..+..+..+|...+.++.++
T Consensus 46 A~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 46 AIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334558889999999999988888888888888887765
No 167
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=44.79 E-value=1.4e+02 Score=24.97 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHH-------hhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLE-------SKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LE-------srA~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
..-|++-+..|.+|++..+.=...|+ ....++++++++-..|++++...-.+-+..|+
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555554444443 34556777777777777777666555444443
No 168
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=44.43 E-value=1.5e+02 Score=29.83 Aligned_cols=33 Identities=27% Similarity=0.117 Sum_probs=19.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhh
Q 038837 251 LTAALANEELVFFVASALITFPILAAWV-LLSSQ 283 (287)
Q Consensus 251 lt~~lAtkeLvWflAsALlalP~~~~~~-llss~ 283 (287)
+..+.+.--++=|+-|++++.|+-|+-+ ++.++
T Consensus 552 ~aaG~aASaVaAfaFS~~lGtPLGIlGiALImAv 585 (602)
T 1cii_A 552 IIAGNAATALVALVFSILTGSALGIIGYGLLMAV 585 (602)
T ss_dssp TBTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345544455555668889999765554 44443
No 169
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.18 E-value=88 Score=23.97 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 038837 36 LQDAKLKIAG 45 (287)
Q Consensus 36 L~qLk~kIa~ 45 (287)
+..|+.+.|.
T Consensus 11 mq~LNdRlAs 20 (93)
T 3s4r_A 11 LQELNDRFAN 20 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445544443
No 170
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=43.93 E-value=63 Score=29.25 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH
Q 038837 132 DRLEEVSLQVEKMS-EIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 132 kkv~eL~sklek~~-ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
.|...+..+++..+ .+-..+..+|+.++.||++|+..
T Consensus 162 ~r~~~l~~qi~~~~~~ak~~~~~~I~rL~~AL~IA~aa 199 (280)
T 3b8m_A 162 IKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAA 199 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555666665555 55566779999999999999874
No 171
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=43.24 E-value=9.1 Score=33.71 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 34 AELQDAKLKIAGLETMLEESIRKV 57 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel 57 (287)
.+.+++..++..|+.++++..+.+
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l 279 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELI 279 (285)
T ss_dssp ------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544433
No 172
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=43.19 E-value=1.4e+02 Score=24.77 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=31.7
Q ss_pred hHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHH---HHHHHHHHHHH
Q 038837 63 YIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEER---LNALEEEIRLL 109 (287)
Q Consensus 63 ~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~---i~eLEkQVe~L 109 (287)
.++..|+-++...++...+..+++.+.+|-.+.+.+ +.-|+|.|-..
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~ 71 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKAT 71 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHH
Confidence 345556677777778888888888888887776654 34455555433
No 173
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=43.14 E-value=2.5e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038837 137 VSLQVEKMSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 137 L~sklek~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
.-+.+..++.+......+||+|+.+...
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666777777888888887664
No 174
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=42.95 E-value=35 Score=30.37 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
.+..++.+++..+..++..++...
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~ 89 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAE 89 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777766665543
No 175
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=42.87 E-value=73 Score=28.74 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHH
Q 038837 129 DAEDRLEEVSLQVEKMSEIVT-EQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~-EQ~~qIqk~E~Alk~ae~~ 168 (287)
.-+-|+..+..+++..+.... .+..+|+.++.||++|+..
T Consensus 125 ~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aa 165 (248)
T 4e29_A 125 NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEA 165 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455556666665554443 4458999999999999854
No 176
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.80 E-value=27 Score=32.74 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=22.7
Q ss_pred HHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 038837 64 IEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 64 l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ele 114 (287)
|.++|..|-..+..|..|++.+.++ +.+|.+|+.+|..|.....
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~-------~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVN-------QQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 3334455555555666666655433 3445555555555554433
No 177
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=42.73 E-value=1.7e+02 Score=25.36 Aligned_cols=11 Identities=0% Similarity=0.114 Sum_probs=5.2
Q ss_pred hhhhHHHHHHH
Q 038837 256 ANEELVFFVAS 266 (287)
Q Consensus 256 AtkeLvWflAs 266 (287)
...++.||+-.
T Consensus 259 ~~~D~~~fi~~ 269 (301)
T 2efk_A 259 PKNDSHVLIEL 269 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhHHHHHHH
Confidence 34455555443
No 178
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.40 E-value=43 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 94 RAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 94 ~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
+++.+..+|+.+++.|+.+++..+.+
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66777777888888887777764433
No 179
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.12 E-value=64 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
.+..+..||.++..++.++..|..+-..|
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888999999999988887775533
No 180
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.83 E-value=1.6e+02 Score=24.83 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 038837 130 AEDRLEEVSLQVEKMS 145 (287)
Q Consensus 130 AEkkv~eL~sklek~~ 145 (287)
.|.-+.+-.+=|+.+.
T Consensus 103 LEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 103 LEADLKEKDSMVESLT 118 (167)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHHHH
Confidence 3333333333333333
No 181
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=41.04 E-value=23 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIH 121 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~ 121 (287)
...|..||.++..++.++..|+.+-.
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888777776644
No 182
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.80 E-value=1.4e+02 Score=24.06 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038837 129 DAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALH 163 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk 163 (287)
..++|++.++..++++++...+-..+|..++..++
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444
No 183
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=40.79 E-value=1.3e+02 Score=23.73 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038837 98 RLNALEEEIRLLWAASR 114 (287)
Q Consensus 98 ~i~eLEkQVe~L~~ele 114 (287)
++.+|+.+|..|...|.
T Consensus 68 ~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 68 RIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455554444444443
No 184
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.83 E-value=84 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESK 126 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsr 126 (287)
.+.+..|.++|+.|..|-.....++..||.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 185
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.75 E-value=42 Score=32.19 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHH
Q 038837 28 SQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 28 ~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
....|..|+..++.++..|+..+.+...+++.-.+.+.+.+..-+..-+.|+.|.+-|
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 4578899999999999999999999888877777777766666666556655554433
No 186
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.63 E-value=85 Score=23.87 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNLESKALDAED 132 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEk 132 (287)
++.||--+-+.|+.|++....-+..++.|..+.|.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665555555554443
No 187
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=39.16 E-value=1.6e+02 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKI 43 (287)
Q Consensus 31 ~l~~eL~qLk~kI 43 (287)
.|+.+.+++...+
T Consensus 33 ~Lk~e~e~l~~~~ 45 (155)
T 2oto_A 33 DLKARLENAMEVA 45 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 188
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=38.70 E-value=1.2e+02 Score=24.04 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhhhhh
Q 038837 105 EIRLLWAASRKNNFD 119 (287)
Q Consensus 105 QVe~L~~elekqn~~ 119 (287)
+|+.|.++|.+.|.+
T Consensus 68 ~v~elqgEI~~Lnq~ 82 (99)
T 3ni0_A 68 RIKELENEVTKLNQE 82 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544443
No 189
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.65 E-value=80 Score=22.05 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
+.+..+|..++..|. ++| +.|..-..+|-.++..|...|+++.
T Consensus 8 ~~r~~~l~~~l~~L~----~rN---~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLA----ARN---SKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555544443 223 3444556677777888887777763
No 190
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=38.44 E-value=24 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 217 MSQVQHQFKRFFLAFKKFHHELQGFIK 243 (287)
Q Consensus 217 i~~~~~~~k~~l~sA~~yH~qvQ~~I~ 243 (287)
+++.++.|+.|+..+++||.++++.+.
T Consensus 26 mk~~~P~~e~lv~~g~ky~~al~~~~~ 52 (253)
T 2d1l_A 26 MKGSYPVWEDFINKAGKLQSQLRTTVV 52 (253)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCcchHHHHHHHHHHHHHHHHHHH
No 191
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=38.25 E-value=1.2e+02 Score=25.47 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 038837 38 DAKLKIAGLETMLE 51 (287)
Q Consensus 38 qLk~kIa~LES~i~ 51 (287)
.+...|...+..|+
T Consensus 64 ~~e~ei~~~~~~v~ 77 (224)
T 2iak_A 64 NVHRAIEEFESSLK 77 (224)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444333333
No 192
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.22 E-value=37 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLE 51 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~ 51 (287)
.+...++++||.+-+.||.+|-
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 5566889999999999988874
No 193
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.14 E-value=75 Score=27.18 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=14.7
Q ss_pred hcccccchhcccCCcccCCcccccchHH
Q 038837 191 SEKHLPKLTGMLVPYLPGKGSILISFMS 218 (287)
Q Consensus 191 ~~ph~~kv~~~~~py~~~~~~~skpyi~ 218 (287)
+.||...+..-+.+++++-+.-+.||+.
T Consensus 115 L~P~~eEL~~~l~~~~Eelr~~L~Py~e 142 (191)
T 1nfn_A 115 LVQYRGEVQAMLGQSTEELRVRLASHLR 142 (191)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3455555555555555555555555553
No 194
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.05 E-value=97 Score=24.36 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS 145 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ 145 (287)
-.+|++++..|.+++.. .+.+.++|+-...|-.-|.++|+.-.
T Consensus 49 ~~eL~~EI~~L~~eI~~----LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQ----LEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555555544432 23444555555666666666666543
No 195
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=37.27 E-value=1.5e+02 Score=28.68 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=52.1
Q ss_pred hHHhHHHhhhHHHHHHHHhhh-hccchh---HHHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHhhhHhHHHHHH
Q 038837 68 DKLVDDMTNKIHHLQSLLSKI-KDDSSR---AEERLNALEEEIRLLWAASRKNNFD--------IHNLESKALDAEDRLE 135 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sL-kk~s~~---aee~i~eLEkQVe~L~~elekqn~~--------~~~LEsrA~dAEkkv~ 135 (287)
.+.+.++.-.+..+.+|+.++ +-...+ ....+.+|++.+..++++++..+.. ...+..-..+|+.++.
T Consensus 266 v~~v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~ 345 (483)
T 2j1d_G 266 ITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFS 345 (483)
T ss_dssp HHHHHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHH
Confidence 445555555666777787777 222222 3344788888888888888876532 3356666777888888
Q ss_pred HHHHHHHHHhhh
Q 038837 136 EVSLQVEKMSEI 147 (287)
Q Consensus 136 eL~sklek~~ki 147 (287)
.|...+..+.+.
T Consensus 346 ~L~~~~~~~~~~ 357 (483)
T 2j1d_G 346 DVEDLLAEAKDL 357 (483)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 196
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.04 E-value=1.9e+02 Score=28.45 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 038837 42 KIAGLETMLEE 52 (287)
Q Consensus 42 kIa~LES~i~e 52 (287)
.|..||..+++
T Consensus 96 dl~~Le~~l~~ 106 (461)
T 3ghg_B 96 SVDELNNNVEA 106 (461)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 197
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.01 E-value=1.3e+02 Score=22.45 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+++..+=..|..+|..||-.+++...+=......++.+-....-|=..++.|...+++|
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34445556677788888777777654444444444444333333334444444454444
No 198
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=36.78 E-value=17 Score=33.13 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------hcCchhhHHHH-hHHhHHHhhhHHHHHHHHhhh
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRK-------VNGKSNYIEER-DKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qe-------l~~Kd~~l~e~-Ek~i~eks~kI~sLqsEi~sL 88 (287)
+-....++...|..|.++++|..++ ++.+|...+.. -.+..||-.||..+|.-+.+=
T Consensus 169 ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL~sa 233 (246)
T 1z56_A 169 VNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILRQN 233 (246)
T ss_dssp HHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 3355566666666677777777777 66677666665 678899999999999877654
No 199
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.42 E-value=1.3e+02 Score=22.77 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+++..+=..|+.+|..||-.+++...+=......++.+-....-|=..++.|...+++|
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 55556667788888888888887665544444445444444444444445555555554
No 200
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.40 E-value=32 Score=24.08 Aligned_cols=11 Identities=0% Similarity=0.141 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 038837 131 EDRLEEVSLQV 141 (287)
Q Consensus 131 Ekkv~eL~skl 141 (287)
.+.+++|.++|
T Consensus 39 ~~~~~el~~~l 49 (53)
T 2yy0_A 39 VEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 201
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.34 E-value=68 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSL 139 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~s 139 (287)
++=+.-+++.++.|.+.+++...+...+.++....+..++++-.
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566666666666666666655555555555555555543
No 202
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=36.01 E-value=1.9e+02 Score=24.11 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 038837 150 EQWIQIQHL 158 (287)
Q Consensus 150 EQ~~qIqk~ 158 (287)
.+|..+.++
T Consensus 191 ~~W~~L~~L 199 (210)
T 3pdy_A 191 TQWSWMLQL 199 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555544
No 203
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.91 E-value=92 Score=25.57 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHH
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSL 84 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsE 84 (287)
+..||++|..++-.+.-.++.- ...+=.+.+.+..+.+...+.+|++|.+.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa--~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADL--SLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--CTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444441 23344466777776666666666666554
No 204
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.84 E-value=22 Score=25.14 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 038837 39 AKLKIAGLETM 49 (287)
Q Consensus 39 Lk~kIa~LES~ 49 (287)
.+.++|+-.|.
T Consensus 7 ~rNr~AA~k~R 17 (62)
T 1jnm_A 7 MRNRIAASKSR 17 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHHHHHH
Confidence 34555555444
No 205
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=35.32 E-value=2.1e+02 Score=24.50 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHhhhhchhhHHH-------HHHHHhhcccccchhcccCCcccCCcccccchHHHHH----H---HHHHHH-HHHHHHH
Q 038837 171 NVQRQLMYARCTFL-------KFVKDFSEKHLPKLTGMLVPYLPGKGSILISFMSQVQ----H---QFKRFF-LAFKKFH 235 (287)
Q Consensus 171 k~q~ea~p~~~~f~-------k~~~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~~~----~---~~k~~l-~sA~~yH 235 (287)
.++.+..|-+..|- .=+|..+.||+....+-+..+.+.-+.-+.||..... + ..+..+ -.+..|+
T Consensus 91 e~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~ 170 (216)
T 2lem_A 91 EVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMR 170 (216)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 44445667655442 2336677899999988888888888888999985432 2 333333 2355566
Q ss_pred HHHHHHHHHHHHhccchhhh
Q 038837 236 HELQGFIKQEMVKNKLTAAL 255 (287)
Q Consensus 236 ~qvQ~~I~~~L~~hElt~~l 255 (287)
.++...+.++=.. ++..++
T Consensus 171 ~kl~~~leeL~~~-p~~~e~ 189 (216)
T 2lem_A 171 ESLAQRLAELKSN-PTLNEY 189 (216)
T ss_dssp HHHHHHHHHHHHC-CCCCCC
T ss_pred HHHHHHHHHHhCC-cchHHH
Confidence 6665555554443 444433
No 206
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.24 E-value=90 Score=26.34 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHH
Q 038837 81 LQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVE 142 (287)
Q Consensus 81 LqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skle 142 (287)
|.+++.+++...-...+-.+.++.+++.|..++...+-+...|+......+..-..|...|+
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLe 125 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLD 125 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444333333444466677777777766666665655565555555555555555443
No 207
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.18 E-value=40 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=13.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038837 125 SKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQH 157 (287)
Q Consensus 125 srA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk 157 (287)
.+..+.+..+..|+.+.+++.....+-+.+|.+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333
No 208
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.95 E-value=59 Score=30.96 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~ 86 (287)
++|++|+.+|..|+....+..++++.=...+++++....+.+..--.|+|++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777666665544444444444443333333333334444443
No 209
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.67 E-value=46 Score=22.95 Aligned_cols=25 Identities=8% Similarity=-0.108 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~ 58 (287)
..+++|..+|..||..|......+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777777776554443
No 210
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.60 E-value=38 Score=24.97 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 038837 37 QDAKLKIAGLETML 50 (287)
Q Consensus 37 ~qLk~kIa~LES~i 50 (287)
+.++..+..|-+.|
T Consensus 15 ~~in~~f~~Lr~lv 28 (83)
T 1nkp_B 15 DHIKDSFHSLRDSV 28 (83)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC
Confidence 33444444444444
No 211
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.52 E-value=1e+02 Score=22.10 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
+++|-+||+.|+.|..+++.- ||. -.-|-++++.+-.++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~---lEe-EqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKS---LEE-EQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHH
Confidence 677888888888877776653 321 224555665554444
No 212
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.13 E-value=1.6e+02 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhccch
Q 038837 232 KKFHHELQGFIKQEMVKNKLT 252 (287)
Q Consensus 232 ~~yH~qvQ~~I~~~L~~hElt 252 (287)
...++.+..++++.+.++.|+
T Consensus 166 a~l~~aL~~~~~~~~~~~Gy~ 186 (421)
T 1ses_A 166 ALYELALLRFAMDFMARRGFL 186 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCE
Confidence 334555666666666665543
No 213
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.60 E-value=2.1e+02 Score=23.86 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=35.3
Q ss_pred HHhhcccccchhcccCCcccCCcccccchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 188 KDFSEKHLPKLTGMLVPYLPGKGSILISFMSQV----QHQFKRFFLAFKKFHHELQGFIKQEM 246 (287)
Q Consensus 188 ~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~~----~~~~k~~l~sA~~yH~qvQ~~I~~~L 246 (287)
|..+.||+....+-+..+.+.-+.-+.||.... .+....+=.+..-|-.+++..|.+-|
T Consensus 117 r~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~l 179 (185)
T 3r2p_A 117 RQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARL 179 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455567777777777777777777778887543 33333333444455566665555544
No 214
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=33.48 E-value=1.7e+02 Score=22.72 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 105 EIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 105 QVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
-...|..-++.|-.-.+++|.-...|...++.-+.+|.+.
T Consensus 36 iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 36 MFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666677766666666666666665553
No 215
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=33.37 E-value=1.5e+02 Score=27.54 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh--hccchhH--------
Q 038837 30 QHLIAELQDAKLKIA----GLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI--KDDSSRA-------- 95 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa----~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~s~~a-------- 95 (287)
..+..+|...+.++. .|.+.-+....-|++++..|.++++.|......|.....-+..- --+....
T Consensus 140 ~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~i~~~~~~~~g~~i~~~i~Ggi 219 (346)
T 2nrj_A 140 QQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGI 219 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGCCC--CCGGGTSCEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhhhhHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhH---HHHHHH
Q 038837 96 -----EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVT---EQWIQI 155 (287)
Q Consensus 96 -----ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~---EQ~~qI 155 (287)
..++..+++++..|...+ .....+..-...+...+..++..++....... -+|.-+
T Consensus 220 ~a~~a~k~~~~~~~ei~~l~~~i----~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m 283 (346)
T 2nrj_A 220 IVGVARDNLGKLEPLLAELRQTV----DYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDL 283 (346)
T ss_dssp EEEEEGGGHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 216
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=33.33 E-value=2.2e+02 Score=24.14 Aligned_cols=32 Identities=9% Similarity=-0.177 Sum_probs=4.6
Q ss_pred HHhhcccccchhcccCCcccCCcccccchHHH
Q 038837 188 KDFSEKHLPKLTGMLVPYLPGKGSILISFMSQ 219 (287)
Q Consensus 188 ~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~ 219 (287)
+..+.||+...++-+..++...+.-+.||...
T Consensus 156 r~~l~P~~eelk~~l~~~veel~~~L~P~~e~ 187 (191)
T 1nfn_A 156 QKRLAVYQAGAREGAERGLSAIRERLGPLVEQ 187 (191)
T ss_dssp HHHHHHHTC-----------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 34445555555555555555555555555443
No 217
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=33.22 E-value=59 Score=28.29 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMS-EIVTEQWIQIQHLEQA 161 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~-ki~~EQ~~qIqk~E~A 161 (287)
.+|.+-...||.-+-+...+++-||.+....+.-+++|+.+|..+. +-.-.-.++++..+.+
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d~ 123 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADA 123 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHHH
Confidence 3577778888888888889999999999999999999999999985 4555556666655443
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.62 E-value=1.8e+02 Score=29.12 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHH-----hHHhHHHhhhHHHHHHHHhhh-hccchhHHHHHHHH
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEER-----DKLVDDMTNKIHHLQSLLSKI-KDDSSRAEERLNAL 102 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~-----Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~i~eL 102 (287)
..+.+.+...|+.+...+|..++.+.+.....-..+.++ ++.++|-..-|.+=-.|-..+ +.| -++++..|
T Consensus 496 ~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~ 572 (592)
T 1f5n_A 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIM 572 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHHHH
Q 038837 103 EEEIRLLWAA 112 (287)
Q Consensus 103 EkQVe~L~~e 112 (287)
.+|++.|++.
T Consensus 573 ~~ei~~l~~~ 582 (592)
T 1f5n_A 573 KNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
No 219
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.46 E-value=1.7e+02 Score=22.76 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LE 124 (287)
.|.+...|...|+.|.+++++-....+.|+
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666665555555544443
No 220
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.80 E-value=47 Score=25.03 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+|++.|+...+.||..|.+.... .+..+......|.+|++++..+
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~----------~~~~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDS----------LARERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp ---------CTTHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888777774431 1333444445555555555444
No 221
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.77 E-value=97 Score=21.60 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q 038837 77 KIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWA 111 (287)
Q Consensus 77 kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~ 111 (287)
.|..|+.+++.|......-...|..|+.|+..|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555544444444555555555555544
No 222
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.61 E-value=1.1e+02 Score=24.37 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL 88 (287)
.+..++..||.+.+.+|..|...+.+.. ..-+.++.--.--..|-.+|..|-++...+
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk----~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYK----GTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888887776644 222334333334566667777777775444
No 223
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=31.20 E-value=2.2e+02 Score=23.31 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=52.6
Q ss_pred HhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHH---------------HhhhhhhhhhHHhhhHhHHHHHHHHH
Q 038837 74 MTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAA---------------SRKNNFDIHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 74 ks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~e---------------lekqn~~~~~LEsrA~dAEkkv~eL~ 138 (287)
|.+....|-+.++.+.-|..-.+|+-.+|=|+|.....+ +.+..+++..=|+-...+++.|+.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLT 92 (121)
T 3lf9_A 13 MDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLT 92 (121)
T ss_dssp HHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHH
Confidence 455667788888888888888888888888887765522 23333333334444555555555444
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038837 139 LQVEKMSEIVTEQWIQIQHLEQALHMAELRAANV 172 (287)
Q Consensus 139 sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~ 172 (287)
-+ -|.+.+..+..-|.++|.+
T Consensus 93 Dk-------------yIkkID~ll~~KEKEI~~~ 113 (121)
T 3lf9_A 93 DV-------------AVKKIDEVLAAKEKELMEV 113 (121)
T ss_dssp HH-------------HHHHHHHHHHHHHHHHHCC
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHH
Confidence 32 3455666666666666654
No 224
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=31.13 E-value=66 Score=28.75 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH
Q 038837 132 DRLEEVSLQVEKMS-EIVTEQWIQIQHLEQALHMAELR 168 (287)
Q Consensus 132 kkv~eL~sklek~~-ki~~EQ~~qIqk~E~Alk~ae~~ 168 (287)
.|...+..+++..+ .+-..+..+|+.++.||++|+..
T Consensus 147 ~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~IA~aa 184 (265)
T 3b8o_A 147 ARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQH 184 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555666665555 45567789999999999999764
No 225
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.00 E-value=68 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 98 RLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 98 ~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
++.+||.++..|+.+++....+...+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766666665544
No 226
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.95 E-value=1.4e+02 Score=20.93 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQV 141 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~skl 141 (287)
.++..|..+|+.|...+...+.+...+-+-+..|..--.--|.++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666766666666666665555554444444444444443
No 227
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.79 E-value=51 Score=20.93 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHH
Q 038837 101 ALEEEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 101 eLEkQVe~L~~elekqn~~~~~LE 124 (287)
-||++|++|..-+.+..+..+.||
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666655555555555444
No 228
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.46 E-value=1.3e+02 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHH
Q 038837 96 EERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEV 137 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL 137 (287)
|..|..|++-+..=.++.|+.|-++=++--..+...+|+..+
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 344666666555555666666665555544445545554433
No 229
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=30.42 E-value=52 Score=30.30 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhc
Q 038837 7 LTLLLVILFWSFTL 20 (287)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (287)
..-+|+.|.|+..+
T Consensus 100 Wp~~Lg~L~WLvel 113 (315)
T 2ve7_A 100 WPHIVAALVWLIDC 113 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888998776
No 230
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=30.30 E-value=2.2e+02 Score=23.11 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEI 106 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQV 106 (287)
.....+...++.|+.+-..|.....++-+.|..--. +-+...-+.+...=|..-+..+.+.--| .+-..+..|-++-
T Consensus 75 ~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~qf~~~~~~~~~Wl~e~e~~~~~~~~g--~dl~~v~~ll~kh 151 (216)
T 1u5p_A 75 FDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESWIKEKKLLVSSEDYG--RDLTGVQNLRKKH 151 (216)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCCCCC--SSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhcCcccC--CCHHHHHHHHHHH
Confidence 334556666777777777777777776665543211 2233333333333333333322222222 2233344444444
Q ss_pred HHHHHHHhhhhhh
Q 038837 107 RLLWAASRKNNFD 119 (287)
Q Consensus 107 e~L~~elekqn~~ 119 (287)
+.+.+++......
T Consensus 152 ~~~~~el~~~~~~ 164 (216)
T 1u5p_A 152 KRLEAELAAHEPA 164 (216)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH
Confidence 4455444443333
No 231
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.24 E-value=88 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 038837 99 LNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~ 120 (287)
+..||.++..++.+...|..+-
T Consensus 46 i~~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 46 LTDKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665553
No 232
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.04 E-value=80 Score=24.37 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 129 DAEDRLEEVSLQVEKMSEIVTEQ-WIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 129 dAEkkv~eL~sklek~~ki~~EQ-~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
+-..-..+++.++..+...+.|+ +..|++.|+++.-|++-+-.-..|++
T Consensus 13 df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 13 DFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777888877766666 56899999999999988877777766
No 233
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=29.44 E-value=98 Score=26.07 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh----hccchhH---HHHHHHHHHHHHHHHHHH
Q 038837 41 LKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI----KDDSSRA---EERLNALEEEIRLLWAAS 113 (287)
Q Consensus 41 ~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL----kk~s~~a---ee~i~eLEkQVe~L~~el 113 (287)
.|+.+|+..+++.+ +.+.++.+--.+++.+|+.++.+|+++ |.++... +.....|.++++.+=.++
T Consensus 72 ~kv~~L~~~~~~~~-------~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kIK~~~i~~~~Id~~y~~lv~~~~~~l~~l 144 (148)
T 3gn4_A 72 VKVGTLKKRLDKFN-------EVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKSSAVLLSAL 144 (148)
T ss_dssp HHHHHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555433 222233222233444555555555543 3333333 233566666666665555
Q ss_pred h
Q 038837 114 R 114 (287)
Q Consensus 114 e 114 (287)
.
T Consensus 145 ~ 145 (148)
T 3gn4_A 145 Q 145 (148)
T ss_dssp -
T ss_pred h
Confidence 4
No 234
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=29.38 E-value=2.4e+02 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q 038837 39 AKLKIAGLETMLEESIRKVNG 59 (287)
Q Consensus 39 Lk~kIa~LES~i~e~~qel~~ 59 (287)
|..||+.||-.+.+..+.+++
T Consensus 11 l~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555554444444433
No 235
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.22 E-value=77 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=13.3
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVT 149 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~ 149 (287)
||++..+...+..+|..+|+.+.+++.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444444444455555555555554443
No 236
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=29.08 E-value=4.5e+02 Score=26.37 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHH
Q 038837 217 MSQVQHQFKRFFLAFKKFHHELQGFIKQEMVKNKLTAAL---ANEELVFFVAS 266 (287)
Q Consensus 217 i~~~~~~~k~~l~sA~~yH~qvQ~~I~~~L~~hElt~~l---AtkeLvWflAs 266 (287)
+......|..+...+..-...++.......+..++...| |+....|.--.
T Consensus 573 ~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~ 625 (863)
T 1sjj_A 573 PQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTK 625 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999998776655555555544 67777776543
No 237
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=29.01 E-value=2.2e+02 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038837 99 LNALEEEIRLLWAASRK 115 (287)
Q Consensus 99 i~eLEkQVe~L~~elek 115 (287)
|.-|-+.|+.|+++.|+
T Consensus 60 ItNLtdsV~~L~dDAed 76 (107)
T 2wps_A 60 INNLSDSITTLMKQIED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34444444444444433
No 238
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.00 E-value=2.1e+02 Score=22.37 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~L 123 (287)
.-|++.++.|...+++...+...+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333
No 239
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=28.66 E-value=50 Score=20.64 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=8.7
Q ss_pred hhhHHhhhHhHHHHHHHH
Q 038837 120 IHNLESKALDAEDRLEEV 137 (287)
Q Consensus 120 ~~~LEsrA~dAEkkv~eL 137 (287)
-..||++....|||++.|
T Consensus 10 caalesklqalekkleal 27 (31)
T 3ljm_A 10 CAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 240
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.13 E-value=1.2e+02 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhccchh
Q 038837 231 FKKFHHELQGFIKQEMVKNKLTA 253 (287)
Q Consensus 231 A~~yH~qvQ~~I~~~L~~hElt~ 253 (287)
....++.++.++++.|.++.|+.
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~e 240 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTP 240 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEE
Confidence 34456778888888888887765
No 241
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.03 E-value=3.2e+02 Score=24.23 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 038837 158 LEQALHMAELRAANVQ 173 (287)
Q Consensus 158 ~E~Alk~ae~~~~k~q 173 (287)
++..+..++.++..++
T Consensus 134 ~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 134 VQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 242
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.03 E-value=92 Score=19.69 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEE 52 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e 52 (287)
+|+.|+..|+-.|++|.=.|..
T Consensus 6 alkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444433
No 243
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.93 E-value=1.9e+02 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
++.+..+||++|+.|+.+++.-..+-..+
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888888888776554433
No 244
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=27.78 E-value=4e+02 Score=26.75 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=9.0
Q ss_pred hHHHhhhHHHHHHHHhhh
Q 038837 71 VDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 71 i~eks~kI~sLqsEi~sL 88 (287)
+.+.-.+|++++|.++++
T Consensus 358 lddArNEItsaeSaInsl 375 (602)
T 1cii_A 358 LLDARNKITSAESAVNSA 375 (602)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555444
No 245
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=27.75 E-value=3e+02 Score=23.76 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=9.6
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~k 146 (287)
+.....++...++.+....+.+.+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~i~~ 128 (309)
T 2ch7_A 105 ISNSAKDVERVVESFQKGAEEITS 128 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333333
No 246
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.29 E-value=2.1e+02 Score=21.91 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038837 43 IAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHN 122 (287)
Q Consensus 43 Ia~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~ 122 (287)
+.+|+..+....++=..=-..|.++|+.-......|..++.+ ...|..+=...|++-.+...+.-.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E--------------~~~L~~eE~~~w~eyn~~~~ql~e 71 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE--------------AERLDQEEAQYQREYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhh
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSE 146 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~k 146 (287)
.+......+.++.--...|+++.|
T Consensus 72 ~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 72 LDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
No 247
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.12 E-value=59 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=10.6
Q ss_pred HhHHhHHHhhhHHHHHHHHhhh
Q 038837 67 RDKLVDDMTNKIHHLQSLLSKI 88 (287)
Q Consensus 67 ~Ek~i~eks~kI~sLqsEi~sL 88 (287)
+|--|.+.-.++..|++|+..|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333444444455555555544
No 248
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.98 E-value=1.9e+02 Score=23.06 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHh
Q 038837 32 LIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERD 68 (287)
Q Consensus 32 l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~E 68 (287)
|.=+++=||.++-.+|-.+.+..++++.|-..++...
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444444433333
No 249
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=26.41 E-value=3.7e+02 Score=24.46 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=32.5
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHH
Q 038837 20 LTSQNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDM 74 (287)
Q Consensus 20 ~~s~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~ek 74 (287)
|||-.|.+.-..|+..+.+.+.=-..|-+-+.|+. +-.+.|-+++-+++..-
T Consensus 36 L~sk~P~qa~~iL~~Rl~~~k~i~keL~~f~kERa---~IEe~YakqLrkLakk~ 87 (287)
T 3g9g_A 36 LTTKSPYEATETIRIRLSQVKLLNKDFYLLFKELA---NLKRNYAQQLRKIIAEN 87 (287)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 46667777778888888887775555555454443 22335666666666653
No 250
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=26.08 E-value=2.1e+02 Score=28.53 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 27 HSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 27 ~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
.....+-+||++.+..|..=+..|++-++ .|..-.-.+.|.-.||-++++|+..+||-
T Consensus 423 ~~plDISseL~~vn~sl~~a~~~I~~Sn~-------~L~~v~~~~~~~~~~~~~~~~~~~~~~~~ 480 (497)
T 2b9b_A 423 IDPLDISQNLAAVNKSLSDALQHLAQSDT-------YLSAIEDKIEEILSKIYHIENEIARIKKL 480 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHccchhHHHHhhhhhhhHHHHHHHHH
Confidence 34456668899999999999999999774 44455566667778999999999999764
No 251
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.92 E-value=2.3e+02 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCch
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKS 61 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd 61 (287)
..|.+++..|+.++.+|++.|.+...+|+..|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~ 35 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRD 35 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46778899999999999999999888887653
No 252
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=25.61 E-value=3e+02 Score=23.17 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh------------------HhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038837 97 ERLNALEEEIRLLWAASRKNNFDIHNLESKA------------------LDAEDRLEEVSLQVEKMSEIVTEQWIQIQ 156 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elekqn~~~~~LEsrA------------------~dAEkkv~eL~sklek~~ki~~EQ~~qIq 156 (287)
+.+..|.++.+.+..++........++.... .....+++.|+.+-+.+.....+.+.+++
T Consensus 162 e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~R~~~L~ 239 (250)
T 1quu_A 162 EEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQ 239 (250)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777755554443333332222 22334556666666666665555444333
No 253
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=25.43 E-value=3.4e+02 Score=25.31 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=28.8
Q ss_pred hHHhHHHhhhHHHHHHHHhhh-hccchh---HHHHHHHHHHHHHHHHHHHhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKI-KDDSSR---AEERLNALEEEIRLLWAASRK 115 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sL-kk~s~~---aee~i~eLEkQVe~L~~elek 115 (287)
.+.++++--.+..+.+|+.++ +-+..+ ....+.+|++.++.++++++.
T Consensus 265 ~~~v~~~~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~ 316 (411)
T 1ux5_A 265 EKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEI 316 (411)
T ss_dssp HHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666777788888877 323222 223356666666666666654
No 254
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.22 E-value=3.3e+02 Score=26.70 Aligned_cols=19 Identities=16% Similarity=-0.122 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038837 151 QWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 151 Q~~qIqk~E~Alk~ae~~~ 169 (287)
-+.+|..+|..+.-.++++
T Consensus 128 l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555554
No 255
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.01 E-value=1.1e+02 Score=30.51 Aligned_cols=111 Identities=13% Similarity=0.236 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHh---HHhHHHhhh----HHHHHHHHhhhhccchh-HH------HHH
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNGKSNYIEERD---KLVDDMTNK----IHHLQSLLSKIKDDSSR-AE------ERL 99 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~E---k~i~eks~k----I~sLqsEi~sLkk~s~~-ae------e~i 99 (287)
.+..+|..++.++|........+|..-.+.+..++ +..++-... -..++.+...|...+.. .+ .++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~ 414 (575)
T 2i1j_A 335 KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEI 414 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566667777777766666555543333333332 111111111 11222222233222111 11 226
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~ 144 (287)
.+.+..|.+|..+.+....+...|+..+..|....++-..+|..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~ 459 (575)
T 2i1j_A 415 RAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAA 459 (575)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999999999999988888888887777766553
No 256
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=24.90 E-value=1.9e+02 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.564 Sum_probs=11.3
Q ss_pred hHHhHHHhhhHHHHHHHHh
Q 038837 68 DKLVDDMTNKIHHLQSLLS 86 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~ 86 (287)
|+++-+.+.++.++++-++
T Consensus 5 ~~~~~~le~kl~~lEnIv~ 23 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVA 23 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666543
No 257
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=24.41 E-value=3.2e+02 Score=23.03 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHh----hhhccchhHHHH---HHHH
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLS----KIKDDSSRAEER---LNAL 102 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~----sLkk~s~~aee~---i~eL 102 (287)
+....++..+..-|+.-.+.|++.. ..+..+.+++...+.+|.+|..++. -|.+..-+-+.+ |+||
T Consensus 36 ~i~~~qi~en~~~iakNqadI~~L~-------~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDIakNqADIdNNinnIYEL 108 (157)
T 2qih_A 36 QIAKAQANENKDGIAKNQADIQLHD-------KKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYEL 108 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHhhhhhhhhhcchhhHHHhhHHHHHHhHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhh----hhhhHHhhhHhHHHHHHHHH
Q 038837 103 EEEIRLLWAASRKNNF----DIHNLESKALDAEDRLEEVS 138 (287)
Q Consensus 103 EkQVe~L~~elekqn~----~~~~LEsrA~dAEkkv~eL~ 138 (287)
--|.++=..++.+..+ +.++++.--.++....+.|+
T Consensus 109 AQQQDQHSSDIKTLkKnS~~NTdnI~knka~~~a~~~~~~ 148 (157)
T 2qih_A 109 AQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLT 148 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhcchhccchhhhhhHHHHhHHHHHh
No 258
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.21 E-value=1.6e+02 Score=23.67 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=19.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038837 89 KDDSSRAEERLNALEEEIRLLWAASRKNNFDI 120 (287)
Q Consensus 89 kk~s~~aee~i~eLEkQVe~L~~elekqn~~~ 120 (287)
+.+..+..+++..|.+++..|++++++.+.+.
T Consensus 24 k~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 24 RVEPAKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43334555666666666666666666666553
No 259
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=24.07 E-value=3.5e+02 Score=23.34 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNG 59 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~ 59 (287)
...++..++.|+.+=..|...+.++.+.|.+
T Consensus 81 ~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~ 111 (323)
T 3edv_A 81 AATIAEWKDGLNEAWADLLELIDTRTQILAA 111 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777877778887777777766653
No 260
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.02 E-value=2.7e+02 Score=22.10 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhhh
Q 038837 105 EIRLLWAASRKNNFD 119 (287)
Q Consensus 105 QVe~L~~elekqn~~ 119 (287)
||+.|++.++.+...
T Consensus 31 qVdlLKD~LEe~eE~ 45 (103)
T 4h22_A 31 QVDTLKDMLLELEEQ 45 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666555554444
No 261
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=23.95 E-value=3e+02 Score=22.58 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038837 29 QQHLIAELQDAKLKIAGLETMLEESIRKVNG 59 (287)
Q Consensus 29 ~~~l~~eL~qLk~kIa~LES~i~e~~qel~~ 59 (287)
...++..++.|+.+=..|...+.++.+.|.+
T Consensus 76 ~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~ 106 (218)
T 3edu_A 76 AATIAEWKDGLNEMWADLLELIDTRMQLLAA 106 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888887766654
No 262
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.77 E-value=1.5e+02 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhH
Q 038837 95 AEERLNALEEEIRLLWAASRKNNFDIHNLESKALDA 130 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dA 130 (287)
.++++..|+++++.|.+++...+.+...++..+++.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888888777776655544
No 263
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=23.61 E-value=1.5e+02 Score=25.97 Aligned_cols=61 Identities=11% Similarity=0.297 Sum_probs=48.8
Q ss_pred ccccchHH-------HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHH
Q 038837 211 SILISFMS-------QVQHQFKRFFLA------FKKFHHELQGFIKQEMVKNKLTAALANEELVFFVASALITF 271 (287)
Q Consensus 211 ~~skpyi~-------~~~~~~k~~l~s------A~~yH~qvQ~~I~~~L~~hElt~~lAtkeLvWflAsALlal 271 (287)
.+.+-|++ ....++|.|+.+ |+...+=++.|=+++...|+=...+++.+.++.+|+++|-|
T Consensus 81 ~vL~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImL 154 (211)
T 3ltl_A 81 EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIML 154 (211)
T ss_dssp HHHHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHH
Confidence 44555653 256788888876 77888889999999999998666689999999999998865
No 264
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=23.48 E-value=1.5e+02 Score=24.47 Aligned_cols=26 Identities=4% Similarity=0.118 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038837 34 AELQDAKLKIAGLETMLEESIRKVNG 59 (287)
Q Consensus 34 ~eL~qLk~kIa~LES~i~e~~qel~~ 59 (287)
.++++++..|..|.+.|...-+.+.+
T Consensus 9 ~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 9 KEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555555555555555444433333
No 265
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.45 E-value=73 Score=19.49 Aligned_cols=19 Identities=21% Similarity=0.283 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038837 96 EERLNALEEEIRLLWAASR 114 (287)
Q Consensus 96 ee~i~eLEkQVe~L~~ele 114 (287)
+.+++-|||+|-+|..++-
T Consensus 7 danvkrlekevgklegeva 25 (28)
T 4dac_A 7 DANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhhhhhhh
Confidence 4567888888888887753
No 266
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.42 E-value=2.5e+02 Score=21.49 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=36.8
Q ss_pred HhhhHhHHHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 124 ESKALDAEDRLEEVSLQVEKMSEI-V-TEQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 124 EsrA~dAEkkv~eL~sklek~~ki-~-~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
++.-.+-..-..+++.++..+... + ++-+..|++.|+++.-|++-+-.-..|++
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556667777776544 4 55567899999999998888777666766
No 267
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.28 E-value=2.4e+02 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 038837 102 LEEEIRLLWAASRKNN 117 (287)
Q Consensus 102 LEkQVe~L~~elekqn 117 (287)
|.+.+..-+.|+...+
T Consensus 16 l~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 16 MKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3334444444443333
No 268
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.00 E-value=1.3e+02 Score=27.98 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038837 95 AEERLNALEEEIRLLWAASR 114 (287)
Q Consensus 95 aee~i~eLEkQVe~L~~ele 114 (287)
...++.++++|++.+.+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 279 AHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766655443
No 269
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.77 E-value=2.5e+02 Score=21.25 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 128 LDAEDRLEEVSLQVEKMSEIVTEQW-IQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 128 ~dAEkkv~eL~sklek~~ki~~EQ~-~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
.+-..-..+++.++..+...+.||+ ..|++.|+++.-|++-+-.-..|++
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~ 58 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVN 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888888887777766 5688888888877776655555543
No 270
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.72 E-value=2.5e+02 Score=21.09 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH
Q 038837 100 NALEEEIRLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK 143 (287)
Q Consensus 100 ~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek 143 (287)
...|..+-.|++++-.-.-.+. |.|.+|+.|..++.=
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~-------dLE~kvesL~eEl~f 81 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARL-------DLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 6667777777777666555544 445556666555543
No 271
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.57 E-value=94 Score=22.78 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH
Q 038837 99 LNALEEEIRLLWAASRKNNFDIHNL 123 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~~~~L 123 (287)
|..|+.+++.|..+++....+...|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444443333
No 272
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.52 E-value=1.2e+02 Score=24.12 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 038837 97 ERLNALEEEIRLLW 110 (287)
Q Consensus 97 e~i~eLEkQVe~L~ 110 (287)
-+|.+|+.+|++|.
T Consensus 65 ~~v~eLe~everL~ 78 (104)
T 3s9g_A 65 ARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444443
No 273
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.84 E-value=3.9e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038837 36 LQDAKLKIAGLETMLEESIRKVN 58 (287)
Q Consensus 36 L~qLk~kIa~LES~i~e~~qel~ 58 (287)
-.++..++..|.......++++.
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554444
No 274
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.61 E-value=1.2e+02 Score=27.97 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=15.6
Q ss_pred hhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHH
Q 038837 119 DIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQ 151 (287)
Q Consensus 119 ~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ 151 (287)
+++.|+......++.+++|..+.+...+.+.++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344444444444444555544444444444443
No 275
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.60 E-value=3.2e+02 Score=22.07 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhh----HHHHhHHhHHHhhhHHHHHHHHhhhhccchh---HHHHHHHHH
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKVNGKSNY----IEERDKLVDDMTNKIHHLQSLLSKIKDDSSR---AEERLNALE 103 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~----l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~---aee~i~eLE 103 (287)
.+.+++++|......|+-.=+.+-.+.+...+. |.+.. ++-.+|..=.++|....+.+.+ -...+..++
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~----~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~ 81 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNE----QVYNELSQRAQRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455677777777777755444433333222221 22221 1222222222222222222222 223456666
Q ss_pred HHHHHHHHHHhhhhhhhhhHH
Q 038837 104 EEIRLLWAASRKNNFDIHNLE 124 (287)
Q Consensus 104 kQVe~L~~elekqn~~~~~LE 124 (287)
+-+-.|.+++..|...++..|
T Consensus 82 ~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 82 DALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554
No 276
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=21.43 E-value=3.2e+02 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=9.3
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 038837 127 ALDAEDRLEEVSLQVEKM 144 (287)
Q Consensus 127 A~dAEkkv~eL~sklek~ 144 (287)
-...+.++..++-+|+++
T Consensus 76 ~~~le~k~Kk~~~kV~Kl 93 (109)
T 2fcw_A 76 HALLEGRTKELGYTVKKH 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555553
No 277
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.40 E-value=2.5e+02 Score=20.60 Aligned_cols=60 Identities=8% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038837 52 ESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 52 e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~ 119 (287)
+....|+..|..+..+-..=++....|..++.. ++.+. .+..|-++==.|++++...-..
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~------~~~~~--~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQ------NASDA--EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTT------CSCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC------CCChH--HHHHHHHHHHHhHHHHHHHHHH
Confidence 344567888888888886666666666555433 44444 8888888888888888766544
No 278
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.34 E-value=78 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=29.9
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKA 127 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA 127 (287)
-.+++|.+.+|+.+|+. + -.|- ||+-|.+++-+.-.++..+|.+.
T Consensus 31 ~qvikEIs~Kv~~Iqn~-------~-L~E~-------~IRdLNDEINkL~rEK~~WE~rI 75 (92)
T 1x4t_A 31 RQIIGEISKKVAQIQNA-------G-LGEF-------RIRDLNDEINKLLREKGHWEVRI 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHC-------C-SCHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCC-------C-CCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899998888876 1 1333 55555566666666777777655
No 279
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.32 E-value=60 Score=26.96 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHH
Q 038837 110 WAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK----MSEIVTEQWIQIQHLEQALHM 164 (287)
Q Consensus 110 ~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek----~~ki~~EQ~~qIqk~E~Alk~ 164 (287)
..-++.-...+.+||+|+..+++++..+-++++. ..-.|+--.-+.+..|.|+++
T Consensus 15 qskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 15 QSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp ------------------------------------CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566678999999999999999999876 444567777888899999884
No 280
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.22 E-value=4.5e+02 Score=23.57 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=17.6
Q ss_pred hHHhHHHhhhHHHHHHHHhhhhcc
Q 038837 68 DKLVDDMTNKIHHLQSLLSKIKDD 91 (287)
Q Consensus 68 Ek~i~eks~kI~sLqsEi~sLkk~ 91 (287)
.--|.+-++++.-|-+|+..+-..
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~ 84 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQ 84 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888887666333
No 281
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.16 E-value=2.7e+02 Score=21.05 Aligned_cols=56 Identities=5% Similarity=0.185 Sum_probs=23.9
Q ss_pred chhhHHHHhHHhHHHhhhHHHHHHHHhhh--hcc-chhHHHHHHHHHHHHHH-HHHHHhh
Q 038837 60 KSNYIEERDKLVDDMTNKIHHLQSLLSKI--KDD-SSRAEERLNALEEEIRL-LWAASRK 115 (287)
Q Consensus 60 Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL--kk~-s~~aee~i~eLEkQVe~-L~~elek 115 (287)
|...|.+.+..+.|...-|..+.-|+.++ ... -..-..++..-..++.. |++++++
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444 110 11122334555555555 5555544
No 282
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.15 E-value=4.7e+02 Score=23.73 Aligned_cols=122 Identities=12% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhh-hccchhHHHH---HHHHHHHHHHHHHHHhhhhhhhh-------h
Q 038837 54 IRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKI-KDDSSRAEER---LNALEEEIRLLWAASRKNNFDIH-------N 122 (287)
Q Consensus 54 ~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sL-kk~s~~aee~---i~eLEkQVe~L~~elekqn~~~~-------~ 122 (287)
++--++|-.-|-=..+.++++--.+..+.+|+.++ +-+..+.+.- +..|++.+..+++++.......+ .
T Consensus 170 ~Ks~d~k~TLLh~lv~~~~~~~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~ 249 (340)
T 1v9d_A 170 TKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEK 249 (340)
T ss_dssp SBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHH
T ss_pred hcCCCCCccHHHHHHHHHHHhCchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHhhhhH---------------------------------HHHHHHHHHHHHHHHHHHHH
Q 038837 123 LESKALDAEDRLEEVSLQVEKMSEIVT---------------------------------EQWIQIQHLEQALHMAELRA 169 (287)
Q Consensus 123 LEsrA~dAEkkv~eL~sklek~~ki~~---------------------------------EQ~~qIqk~E~Alk~ae~~~ 169 (287)
+..-..+|+.++..|......+.+... ..=.+-+..|+..+.|+++.
T Consensus 250 m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e~eek~~~~~~~~ 329 (340)
T 1v9d_A 250 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAK 329 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhh
Q 038837 170 ANVQRQ 175 (287)
Q Consensus 170 ~k~q~e 175 (287)
-+++.+
T Consensus 330 e~~~~~ 335 (340)
T 1v9d_A 330 EKAEKE 335 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 283
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.07 E-value=98 Score=21.02 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=9.6
Q ss_pred hHHHHhHHhHHHhhhHHHHHHHH
Q 038837 63 YIEERDKLVDDMTNKIHHLQSLL 85 (287)
Q Consensus 63 ~l~e~Ek~i~eks~kI~sLqsEi 85 (287)
|+.++|....++..+.+.|++.+
T Consensus 4 Yl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 284
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=21.00 E-value=2.6e+02 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038837 30 QHLIAELQDAKLKIAGLETMLEESI 54 (287)
Q Consensus 30 ~~l~~eL~qLk~kIa~LES~i~e~~ 54 (287)
..|+..++.|+-+...|+..|++-.
T Consensus 9 ~~Lr~~~d~L~kkq~~L~~~i~~e~ 33 (79)
T 4abm_A 9 QRLRDTEEMLSKKQEFLEKKIEQEL 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999998643
No 285
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.93 E-value=2.9e+02 Score=21.20 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=36.9
Q ss_pred hhccc-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHH
Q 038837 18 FTLTS-QNQQHSQQHLIAELQDAKLKIAGLETMLEESIRKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAE 96 (287)
Q Consensus 18 ~~~~s-~~~~~~~~~l~~eL~qLk~kIa~LES~i~e~~qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~ae 96 (287)
|+||+ ..|+.+ ++.++.+=| -.+|+.-++|+. ++-+.|..+...|+.|..+...|
T Consensus 9 ~dL~~~e~pse~---YWk~lAE~R--r~AL~eaL~EN~-----------~Lh~~ie~~~eEi~~Lk~en~~L-------- 64 (83)
T 1wlq_A 9 FDLISKENPSSQ---YWKEVAEQR--RKALYEALKENE-----------KLHKEIEQKDSEIARLRKENKDL-------- 64 (83)
T ss_dssp -----CCCTTCT---HHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHhcCCCcHH---HHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 56764 344433 455665433 346777777754 34445556666677776665433
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038837 97 ERLNALEEEIRLLWAASRK 115 (287)
Q Consensus 97 e~i~eLEkQVe~L~~elek 115 (287)
.+|-.+|+-|-.-+++
T Consensus 65 ---~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 65 ---AEVAEHVQYMAEVIER 80 (83)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 5666666666555443
No 286
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.91 E-value=1.8e+02 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 31 HLIAELQDAKLKIAGLETMLEESIRKV 57 (287)
Q Consensus 31 ~l~~eL~qLk~kIa~LES~i~e~~qel 57 (287)
.|..|.++++..|..||+.+.....+.
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999888765433
No 287
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.63 E-value=96 Score=32.15 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh-HHHHHH
Q 038837 109 LWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEKMSEIVTEQWIQIQHLEQALHMAELRAANVQRQLMYARC-TFLKFV 187 (287)
Q Consensus 109 L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek~~ki~~EQ~~qIqk~E~Alk~ae~~~~k~q~ea~p~~~-~f~k~~ 187 (287)
|...++|.+.....+.-+..+++++++....+..+.++ ++-...-...|.++...|+++-.++.+-+-..- .|-+|+
T Consensus 622 l~~ti~kv~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv 699 (771)
T 1h2v_C 622 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDD--RSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFI 699 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555554444444444444443222222111 011112233445555666666666555332211 233455
Q ss_pred HHhhcccccchhcccCCcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 038837 188 KDFSEKHLPKLTGMLVPYLPGKGSILISFMSQVQHQFKRFFLAFKKFHHELQGFIKQEMVKNKLTA 253 (287)
Q Consensus 188 ~~~~~ph~~kv~~~~~py~~~~~~~skpyi~~~~~~~k~~l~sA~~yH~qvQ~~I~~~L~~hElt~ 253 (287)
.-. .+|+++...- ++.+. .|. -.-.-|++-.-...||.+++.+. +.|...=||.
T Consensus 700 ~~l-~~~~~~~~~~-~~~~~------~~W---~~~~~gr~~~~~~~~~~~~~~~~-~~l~~~~f~~ 753 (771)
T 1h2v_C 700 MIL-TEHLVRCETD-GTSVL------TPW---YKNCIERLQQIFLQHHQIIQQYM-VTLENLLFTA 753 (771)
T ss_dssp HHH-HHHHHHHHHH-TCCSC------CHH---HHHHHHHHHHHHHHTHHHHGGGH-HHHHHHTSCT
T ss_pred HHH-Hhhccchhcc-CCCcC------chh---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence 433 6677644332 22110 111 11234566677788999998854 4555555554
No 288
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=20.62 E-value=1.5e+02 Score=26.38 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHhHHHHHHHHHHHHHH-HhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038837 107 RLLWAASRKNNFDIHNLESKALDAEDRLEEVSLQVEK-MSEIVT--EQWIQIQHLEQALHMAELRAANVQRQLM 177 (287)
Q Consensus 107 e~L~~elekqn~~~~~LEsrA~dAEkkv~eL~sklek-~~ki~~--EQ~~qIqk~E~Alk~ae~~~~k~q~ea~ 177 (287)
-+|..-++|+|.+-+.++-.-++.|++++.|+.++++ +.++.+ ..--..-.=|+.+..+-..|.+...+++
T Consensus 50 ~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~~Ds~v~~L~ekvr 123 (222)
T 2wrg_I 50 NKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVK 123 (222)
T ss_dssp HHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 4567778999999999999999999999999998865 333322 1122333446777777777666655544
No 289
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.41 E-value=2.3e+02 Score=19.95 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038837 134 LEEVSLQVEKMSEIVTEQWIQIQHLEQ 160 (287)
Q Consensus 134 v~eL~sklek~~ki~~EQ~~qIqk~E~ 160 (287)
.++|..+++.+++-|.+-..+|..++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 290
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.28 E-value=1e+02 Score=29.83 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhcCchhhHHHHhHHhHHHhhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHhHHHHH
Q 038837 55 RKVNGKSNYIEERDKLVDDMTNKIHHLQSLLSKIKDDSSRAEERLNALEEEIRLLWAASRKNNFDIHNLESKALDAEDRL 134 (287)
Q Consensus 55 qel~~Kd~~l~e~Ek~i~eks~kI~sLqsEi~sLkk~s~~aee~i~eLEkQVe~L~~elekqn~~~~~LEsrA~dAEkkv 134 (287)
.++..-|+.-+++...+++.......+..+|-.+|+.. ++.+.|..+......++..+|....+.++++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----------EPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 038837 135 EEVSLQV 141 (287)
Q Consensus 135 ~eL~skl 141 (287)
+++-..+
T Consensus 100 ~~~~~~i 106 (455)
T 2dq0_A 100 DYYLWRL 106 (455)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
No 291
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.24 E-value=2.2e+02 Score=22.30 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 038837 99 LNALEEEIRLLWAASRKNNFD 119 (287)
Q Consensus 99 i~eLEkQVe~L~~elekqn~~ 119 (287)
..+|..|+..|++.+.+.|.+
T Consensus 70 Ke~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 70 KEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp TSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467777887777776666654
Done!