BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038838
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 13/230 (5%)
Query: 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYF-LPNLLSGEGIQCVAQFHK 59
MKF+A + + R ++ K+ K C L ++ +K F L + L+ G+ + +
Sbjct: 1 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60
Query: 60 ETLFGDYRISSQIEDCIAFAIDIS------LLQPGSAANCLQIKLVKKLPPNCTQAMPFL 113
E F ++++ + ++++ L+ A L+IKL K P T ++ L
Sbjct: 61 ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL 120
Query: 114 TFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMK 173
+ + V D+PI K + R +LQ + D P + +P L +++ V+ MK
Sbjct: 121 SMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPV--VPD-PDVSIYLPVLKTMKSVVEKMK 174
Query: 174 HVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNL 223
++ + + + +L+L+I T L+ + F+ L + + EDRN+
Sbjct: 175 NISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNV 224
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant
pdb|3H2P|B Chain B, Human Sod1 D124v Variant
Length = 153
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 170 DWMKHVGDLVNVSICKYRDLHLQISTTLITLGAE---FRKLLVIGEKAVAPSEDRNLSAQ 226
D +HVGDL NV+ K + I ++I+L + + LV+ EKAV + N +
Sbjct: 76 DEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKAVDLGKGGNEES- 134
Query: 227 TRSERAISR 235
T++ A SR
Sbjct: 135 TKTGNAGSR 143
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 42 LPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKK 101
+ N L+ + AQ+ + L D ++++ + + +P SA+ C+ +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 102 LP-----------------PNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQT 144
+P PN T+ M T E GY + QD+ + ++ E+ T
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY---ICQDIDPEQLQDKSN--EILT 175
Query: 145 AL--DMAQDLPPTLVQVPDLNQLQNFVDWMK 173
A+ M ++ P V++ N L N +++ K
Sbjct: 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 65 DYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAV 124
D R + + + A D+ L++ G+A Q+ +KK C + P T T + A
Sbjct: 117 DNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRT--FPGAT 174
Query: 125 IQDVPISKPL 134
I++ P S+P+
Sbjct: 175 IRNTP-SEPI 183
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 24/149 (16%)
Query: 44 NLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLP 103
N L+ + AQ+ + L D ++++ + + +P SA+ C+ ++P
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP 122
Query: 104 -----------------PNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTAL 146
PN T+ M T E GY + QD+ + ++ E+ TA+
Sbjct: 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY---ICQDIDPEQLQDKSN--EILTAI 177
Query: 147 --DMAQDLPPTLVQVPDLNQLQNFVDWMK 173
M ++ P V++ N L N +++ K
Sbjct: 178 IQGMRKEEPSNNVKLAATNALLNSLEFTK 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,421,645
Number of Sequences: 62578
Number of extensions: 264651
Number of successful extensions: 880
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 10
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)