BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038838
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog OS=Dictyostelium discoideum GN=hus1
PE=3 SV=1
Length = 271
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE 60
MKFKA +++ + L + + + K+ C +T +K F+ +G+Q + +
Sbjct: 1 MKFKAKISKASILL---KTVQNIMKIYNECICHITPDKLRFIIQSDFNDGMQVFCEIQRS 57
Query: 61 TLFGDYRISSQIEDCIAFAIDIS----LLQPGSAANCLQIKLVKKLPPNCTQAM--PFLT 114
+F ++ I S ++ I F +D+ +LQ ++ V + N T+ P L
Sbjct: 58 LIFENFTIESLSDNEIQFQLDLESLRRVLQSATSNG------VSDIFTNLTKVRGGPVLH 111
Query: 115 FETKGYKSAVI--QDVPISKPLSRAQVLELQTALDMAQDLPPTL------VQVPDLNQLQ 166
F K S + QD+PI L TA MAQ PTL + +P+L LQ
Sbjct: 112 FIIKSGTSGTVIFQDIPIV----------LLTAQQMAQINEPTLPDPLVHILLPNLKNLQ 161
Query: 167 NFVDWMKHVGDLVNVSICKYRDLHLQISTT 196
+D MK++ D + + I L ++ T+
Sbjct: 162 KVIDKMKNISDCLKIMIAMNNRLSFEVETS 191
>sp|O60921|HUS1_HUMAN Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1
Length = 280
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 13/230 (5%)
Query: 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYF-LPNLLSGEGIQCVAQFHK 59
MKF+A + + R ++ K+ K C L ++ +K F L + L+ G+ + +
Sbjct: 1 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60
Query: 60 ETLFGDYRISSQIEDCIAFAIDIS------LLQPGSAANCLQIKLVKKLPPNCTQAMPFL 113
E F ++++ + ++++ L+ A L+IKL K P T ++ L
Sbjct: 61 ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL 120
Query: 114 TFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMK 173
+ + V D+PI K + R +LQ + D P + +P L +++ V+ MK
Sbjct: 121 SMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPV--VPD-PDVSIYLPVLKTMKSVVEKMK 174
Query: 174 HVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNL 223
++ + + + +L+L+I T L+ + F+ L + + EDRN+
Sbjct: 175 NISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNV 224
>sp|Q8K572|HUS1B_MOUSE Checkpoint protein HUS1B OS=Mus musculus GN=Hus1b PE=2 SV=1
Length = 276
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 14/213 (6%)
Query: 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGE----GIQCVAQ 56
M+F+A +T L + + K+ KVC L + ++ YF P L GE G
Sbjct: 1 MRFRARITSKRFIELFIQVSSTVAKLAKVCVLRVCPDRLYFCPMGLLGEAQLWGEMRRDV 60
Query: 57 FHKETLFGDYRISSQIEDCIAFAID--ISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLT 114
FH + G + ++I C+ + ++ A+ L+++L K P T + +
Sbjct: 61 FHHFCMEGASQEFNEI--CLELMSEHLARAVKNAGNASSLKLQLTNKQRPCLTLVVELAS 118
Query: 115 FETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKH 174
G+ AV+ D+P+ + L R + + D+ V +P L L+N V+ M +
Sbjct: 119 --CPGHTRAVVHDLPV-RVLPRRRWKDCTEPHVRGSDVS---VYLPALKTLKNMVERMAN 172
Query: 175 VGDLVNVSICKYRDLHLQISTTLITLGAEFRKL 207
VG V V ++L + T +T+ + F+ L
Sbjct: 173 VGSHVLVEANLNGRMNLTVETDRVTIKSYFKNL 205
>sp|P78955|HUS1_SCHPO Checkpoint protein hus1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hus1 PE=1 SV=1
Length = 287
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 36/246 (14%)
Query: 1 MKFKAFLTENGVNLLE-KRFLPVLDKMGKVCHLFLTREKAYF--LPNLLSGEGIQCVAQF 57
M+FK ++ NL R + LDK+G+ C L L E F +P+ Q +
Sbjct: 1 MRFKTRIS----NLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDF---RMTQVWSVL 53
Query: 58 HKETLFGDYRISSQIEDCIAFAIDIS----LLQPGSAANCLQIKLVKKLPPNCTQAMPFL 113
ET+F DY + S ++ I + I L+ + A+ ++L KK P L
Sbjct: 54 EVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKK------NNQPLL 107
Query: 114 TFETKGYKSA-----VIQDVPISKPLSRA--QVLELQTALDMAQDLPPTLVQVPDLNQLQ 166
+ T A V ++P+ + LS++ V++ TA + P + +P LN L+
Sbjct: 108 SLSTTWSGRAFGSNIVTHNIPV-RVLSQSYVSVIKEPTAPE-----PDCHIFLPQLNFLR 161
Query: 167 NFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQ 226
+ VD K + D + +S +L L ++ + +++ L + PS+ ++S
Sbjct: 162 HVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGL---ENPELDPSQVEDISRH 218
Query: 227 TRSERA 232
RA
Sbjct: 219 PSQTRA 224
>sp|P25545|CBBR_XANFL HTH-type transcriptional regulator CbbR OS=Xanthobacter flavus
GN=cbbR PE=4 SV=2
Length = 333
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 12 VNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFH 58
V +KR LP G+ FL RE A FLP + GEG +C H
Sbjct: 276 VRARDKRLLPA----GQALMDFLEREGASFLPQMPGGEGGRCYLPDH 318
>sp|Q44290|NIFV1_NOSS1 Homocitrate synthase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=nifV1 PE=3 SV=2
Length = 377
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 50 GIQCVAQFHKETLFGDYRISSQ-IEDCIAFAIDISL 84
GIQ A+FH G +R+S Q ++DCI+FA+D L
Sbjct: 99 GIQIAAKFH-----GQWRVSLQRLKDCISFAVDQGL 129
>sp|A2RVA7|CEP44_XENLA Centrosomal protein of 44 kDa OS=Xenopus laevis GN=cep44 PE=2 SV=1
Length = 384
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 51 IQCVAQFHKETLFGDYRISSQIEDCIAFAID-ISLLQPGSAANCLQIKLVKKLPPNCTQA 109
+ CV + HKE + G ++ SQ+ + A D + P + +K +K P A
Sbjct: 113 VDCVVKKHKE-ITGQNKVKSQLVKKVVSAKDQCEVFYPEDVSVQPSVKTTQKKPLVERHA 171
Query: 110 MPFLTFETKGYKSAVIQDVPISKPLSRAQ-----VLELQTALDMAQDLP 153
TK Y SA+++D+ +P S ++ E+++ + A+ P
Sbjct: 172 GSEFLLPTKCYSSALVEDIEEEEPTSDSEGGSHLEHEMESPFETAETTP 220
>sp|C0MEF7|ACKA_STRS7 Acetate kinase OS=Streptococcus equi subsp. zooepidemicus (strain
H70) GN=ackA PE=3 SV=1
Length = 399
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 46 LSGEGIQCVA--QFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLP 103
++G G + VA ++ KE++ D ++ Q+E+ A A L PG+AA I+ +K+
Sbjct: 83 ITGVGHRIVAGGEYFKESVVVDDKVVEQVEELAALA---PLHNPGAAAG---IRAFRKIL 136
Query: 104 PNCTQAMPFLT-FETKGYKSAVIQDVP 129
P+ T F T F T K + +P
Sbjct: 137 PDITSVCVFDTSFHTTMQKHTYLYPIP 163
>sp|B4U063|ACKA_STREM Acetate kinase OS=Streptococcus equi subsp. zooepidemicus (strain
MGCS10565) GN=ackA PE=3 SV=1
Length = 400
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 46 LSGEGIQCVA--QFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLP 103
++G G + VA ++ KE++ D ++ Q+E+ A A L PG+AA I+ +K+
Sbjct: 83 ITGVGHRIVAGGEYFKESVVVDDKVVEQVEELAALA---PLHNPGAAAG---IRAFRKIL 136
Query: 104 PNCTQAMPFLT-FETKGYKSAVIQDVP 129
P+ T F T F T K + +P
Sbjct: 137 PDITSVCVFDTSFHTTMQKHTYLYPIP 163
>sp|C0M6X6|ACKA_STRE4 Acetate kinase OS=Streptococcus equi subsp. equi (strain 4047)
GN=ackA PE=3 SV=1
Length = 399
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 46 LSGEGIQCVA--QFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLP 103
++G G + VA ++ KE++ D ++ Q+E+ A A L PG+AA I+ +K+
Sbjct: 83 ITGVGHRIVAGGEYFKESVVVDDKVVEQVEELAALA---PLHNPGAAAG---IRAFRKIL 136
Query: 104 PNCTQAMPFLT-FETKGYKSAVIQDVP 129
P+ T F T F T K + +P
Sbjct: 137 PDITSVCVFDTSFHTTMQKHTYLYPIP 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,201,598
Number of Sequences: 539616
Number of extensions: 3488859
Number of successful extensions: 10854
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10850
Number of HSP's gapped (non-prelim): 13
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)