Query 038838
Match_columns 284
No_of_seqs 132 out of 214
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a1j_B HHUS1, checkpoint prote 100.0 6.3E-58 2.2E-62 421.2 29.1 261 1-284 2-280 (281)
2 1plq_A Proliferating cell nucl 99.7 3.4E-15 1.2E-19 134.0 23.0 236 3-281 2-250 (258)
3 1u7b_A PCNA, cyclin, prolifera 99.7 1.7E-14 6E-19 129.5 24.6 236 3-281 2-251 (261)
4 2zvv_A PCNA 1, proliferating c 99.7 2.6E-14 8.9E-19 130.0 24.4 239 3-282 22-272 (276)
5 1iz5_A Proliferating cell nucl 99.6 1.2E-13 3.9E-18 123.4 24.9 231 1-281 1-243 (249)
6 3aiz_C DNA polymerase sliding 99.6 1.6E-12 5.4E-17 115.8 23.9 221 1-274 1-227 (246)
7 3aiz_A DNA polymerase sliding 99.5 3.5E-12 1.2E-16 113.7 19.4 222 3-274 2-230 (248)
8 3lx2_A DNA polymerase sliding 99.4 3E-11 1E-15 108.9 23.3 222 1-271 1-227 (259)
9 2ijx_A DNA polymerase sliding 99.4 5.7E-11 2E-15 105.5 21.1 221 3-274 1-226 (244)
10 1ud9_A DNA polymerase sliding 99.4 4E-11 1.4E-15 106.6 19.3 221 3-274 1-226 (245)
11 1rwz_A DNA polymerase sliding 99.3 8.8E-10 3E-14 97.9 25.0 217 4-274 2-223 (245)
12 3fds_D DNA polymerase sliding 99.1 3.7E-08 1.3E-12 87.7 23.0 220 3-272 2-225 (245)
13 3fds_C DNA polymerase sliding 99.0 1.4E-08 4.8E-13 91.2 18.7 229 3-281 2-245 (249)
14 3a1j_C Cell cycle checkpoint p 99.0 2E-07 6.7E-12 84.0 24.7 231 1-282 3-246 (263)
15 3k4x_A PCNA, proliferating cel 99.0 8.7E-08 3E-12 99.0 23.9 237 3-281 8-256 (798)
16 3p91_A Proliferating cell nucl 98.9 1.7E-07 5.9E-12 84.5 22.2 235 3-281 7-253 (265)
17 3k4x_A PCNA, proliferating cel 98.8 3.3E-07 1.1E-11 94.6 21.8 241 1-281 540-790 (798)
18 3ifv_A PCNA; processivity fact 98.7 6.9E-07 2.3E-11 79.7 17.6 215 3-271 2-222 (247)
19 3a1j_A Cell cycle checkpoint c 98.7 7.8E-07 2.7E-11 80.2 16.1 240 1-281 1-262 (266)
20 3g65_A Cell cycle checkpoint c 97.4 0.0026 9E-08 58.2 13.6 238 1-274 1-249 (296)
21 3fds_C DNA polymerase sliding 67.8 28 0.00095 30.2 9.2 99 3-118 132-236 (249)
22 3lx2_A DNA polymerase sliding 62.5 73 0.0025 27.4 10.9 90 14-118 139-235 (259)
23 3fds_D DNA polymerase sliding 59.3 45 0.0015 28.5 8.9 89 14-118 138-232 (245)
24 3ifv_A PCNA; processivity fact 57.7 72 0.0025 27.2 10.0 88 14-118 136-230 (247)
25 3a1j_A Cell cycle checkpoint c 56.0 61 0.0021 28.1 9.3 87 161-267 9-102 (266)
26 3p91_A Proliferating cell nucl 53.6 92 0.0032 26.9 10.1 89 14-117 146-244 (265)
27 3g65_A Cell cycle checkpoint c 50.5 96 0.0033 27.6 9.8 94 159-270 7-105 (296)
28 3a1j_C Cell cycle checkpoint p 49.3 64 0.0022 27.9 8.3 89 16-119 151-247 (263)
29 1u7b_A PCNA, cyclin, prolifera 42.2 1.6E+02 0.0053 24.9 10.6 88 16-118 144-242 (261)
30 1rwz_A DNA polymerase sliding 31.8 2.3E+02 0.0077 23.7 9.2 76 16-101 138-218 (245)
31 3aiz_A DNA polymerase sliding 25.5 2.8E+02 0.0097 23.1 8.4 78 16-100 143-224 (248)
32 1plq_A Proliferating cell nucl 24.5 3.1E+02 0.011 22.9 10.2 79 16-101 144-232 (258)
33 2zvv_A PCNA 1, proliferating c 20.8 3.9E+02 0.013 22.7 10.5 88 16-118 164-262 (276)
34 2ijx_A DNA polymerase sliding 20.5 3.7E+02 0.013 22.3 8.6 77 16-100 139-220 (244)
No 1
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=100.00 E-value=6.3e-58 Score=421.19 Aligned_cols=261 Identities=21% Similarity=0.318 Sum_probs=231.6
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccC-CCCceEEEEEEccCCCcCceEeeec--CCCeEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLL-SGEGIQCVAQFHKETLFGDYRISSQ--IEDCIA 77 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~-~~~g~qvW~~l~~~~~F~~y~i~S~--~~N~I~ 77 (284)
|||||++.|.+++.+|+++++++++|+|.|+++|+|+.++|++.++ .++|+|+||.+.++.+|++|+|+|. ++|+|+
T Consensus 2 MkF~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~ 81 (281)
T 3a1j_B 2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIY 81 (281)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEE
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEE
Confidence 9999999999877788999999999999999999999999999764 4589999999999999999999965 589999
Q ss_pred EEEeccccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEe-----cceeEEEEeccCCcccCHHHHhhhhhhhhc
Q 038838 78 FAIDISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETK-----GYKSAVIQDVPISKPLSRAQVLELQTALDM 148 (284)
Q Consensus 78 le~~~~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~-----g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~ 148 (284)
||+++++|. ++.|+++++|||+|++ .|+|+|++. +.++.++||+||+ +++.++|++|.+|.+
T Consensus 82 l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~-------~p~L~fe~~~~~~~~~~~~v~~dipvk-ll~~~~~e~l~~P~~- 152 (281)
T 3a1j_B 82 LELTSENLSRALKTAQNARALKIKLTNKH-------FPCLTVSVELLSMSSSSRIVTHDIPIK-VIPRKLWKDLQEPVV- 152 (281)
T ss_dssp EEEEHHHHHHHGGGGGGEEEEEEEEECSS-------SCEEEEEEEECCSSSCCCEEEEEEECE-ECCGGGGGGGSCCCC-
T ss_pred EEEeHHHHHHHHHhcCCCCeEEEEeccCC-------CCEEEEEEEcccCCCCceEEEEEeeeE-EcCHHHHhhcCCCCC-
Confidence 999999999 5678999999999996 499999998 6679999999995 999999999999954
Q ss_pred cCCCCCeEEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccch
Q 038838 149 AQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTR 228 (284)
Q Consensus 149 ~~~~p~~~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r 228 (284)
+.|+++|.||++++|++++||||++|+.|+|+||++|+|+|++++|.++++++|++|.+++.+. ++++
T Consensus 153 --~~~dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~------~~~~---- 220 (281)
T 3a1j_B 153 --PDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLAS------ESTH---- 220 (281)
T ss_dssp --CCCSEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC----------------
T ss_pred --CCCCeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCc------cccc----
Confidence 4678899999999999999999999999999999999999999999999999999999765422 1111
Q ss_pred hhhhcCCCCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEecCC
Q 038838 229 SERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFIPGK 284 (284)
Q Consensus 229 ~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~iP~~ 284 (284)
+..+++++++|+||+|+|.+|+++++++|+.++|+|.+++.+++ +.|+|||||.
T Consensus 221 --~~~~~~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~y~~~~~g~l~yylp~~ 280 (281)
T 3a1j_B 221 --EDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPAL 280 (281)
T ss_dssp ------CCCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEEEEESSSCEEEEEEECC
T ss_pred --cccCCCccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEEEEeCCcEEEEEEeeec
Confidence 11234479999999999999999999999999999999999887 4499999984
No 2
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.70 E-value=3.4e-15 Score=133.99 Aligned_cols=236 Identities=11% Similarity=0.152 Sum_probs=176.4
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.+.+ .| ++++.++.++-+.|.+.++++.+.++..+. ..-.++-..++. ..|++|+++. .|.+.++.
T Consensus 2 f~a~~~~~~--~~-~~i~~~i~~i~~~v~~~~~~~gl~~~a~D~-~rla~~~~~l~~-~~F~~y~~~~----~~~~~i~l 72 (258)
T 1plq_A 2 LEAKFEEAS--LF-KRIIDGFKDCVQLVNFQCKEDGIIAQAVDD-SRVLLVSLEIGV-EAFQEYRCDH----PVTLGMDL 72 (258)
T ss_dssp EEEEESSHH--HH-HHHHHHHTTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEG-GGSSEECCSS----CEEEEEEH
T ss_pred eEEEecchH--HH-HHHHHHHHHHhceEEEEEcCCceEEEEECC-CcEEEEEEEECH-HhCcEEEeCC----CeEEEEEH
Confidence 999999865 54 899999999999999999999999998764 234454455554 5999999964 46799999
Q ss_pred cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecce--eEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCe
Q 038838 83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYK--SAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPT 155 (284)
Q Consensus 83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~--~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~ 155 (284)
..|. .+.+.+.++|++.+.+ +.|.|.+.+.. +..++.++. +-... ++|..| + ..+.
T Consensus 73 ~~l~kil~~~~~~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~rl---ie~~~-~~~~ip-----~~~~~~ 135 (258)
T 1plq_A 73 TSLSKILRCGNNTDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSLKL---MDIDA-DFLKIE-----ELQYDS 135 (258)
T ss_dssp HHHHHHTTCSTTTSEEEEEECSSC--------SEEEEEEECSSSSCEEEEEEEC---BCCCC-CCCCCC-----CSCCSE
T ss_pred HHHHHHHhcCCCCCEEEEEecCCC--------CeEEEEEEcCCCCeEEEEEEEc---ccCCc-ccCCCC-----CCCccE
Confidence 8888 3345677999997654 68888887543 344455444 44443 556555 3 3556
Q ss_pred EEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCC
Q 038838 156 LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISR 235 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (284)
.+.||+ +.|+.+++|+..+|+.|+|+++ .|.++|..++|..+..++|..+.++. ..++.. + ...
T Consensus 136 ~i~~~~-~~l~~av~r~~~~s~~v~i~~~-~~~l~ls~~~d~g~~~~~l~~~~~~~------~~~~~~---~-----~~~ 199 (258)
T 1plq_A 136 TLSLPS-SEFSKIVRDLSQLSDSINIMIT-KETIKFVADGDIGSGSVIIKPFVDME------HPETSI---K-----LEM 199 (258)
T ss_dssp EEEEEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEECSSCEEEEEECCBCCTT------CGGGCB---E-----EEE
T ss_pred EEEEeH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCceEEEEEecCCCCC------CCccce---E-----Eec
Confidence 888998 8999999999999999999998 56899999999999999998776432 111100 0 112
Q ss_pred CCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEe
Q 038838 236 GDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFI 281 (284)
Q Consensus 236 ~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~i 281 (284)
|+..++..+.|-|..+|.+..+ ...|.+.+.+++-+.+ ..++||+
T Consensus 200 ge~~~i~f~~~yL~~~lka~~~-s~~V~i~~~~~~Pl~l~~~~~~~~~~y~l 250 (258)
T 1plq_A 200 DQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEAPALFQFDLKSGFLQFFL 250 (258)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEHHHHHHHhccccC-CceEEEEECCCCCEEEEEEECCeEEEEEE
Confidence 3568999999999999988765 6678888888777666 3577877
No 3
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.68 E-value=1.7e-14 Score=129.46 Aligned_cols=236 Identities=11% Similarity=0.180 Sum_probs=174.0
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.+.+ .| ++++.+++++-+.|.+.++++.+.++..+. ..-.++-..++ ...|++|+++ +.|.+.++.
T Consensus 2 f~a~~~~~~--~~-k~i~~~i~~il~~v~~~~~~~gl~~~a~D~-~rla~~~~~l~-~~~f~~y~~~----~~i~~~i~l 72 (261)
T 1u7b_A 2 FEARLVQGS--IL-KKVLEALKDLINEACWDISSSGVNLQSMDS-SHVSLVQLTLR-SEGFDTYRCD----RNLAMGVNL 72 (261)
T ss_dssp EEEEESCTH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEE-GGGSSEEEES----SCEEEEEEH
T ss_pred eEEEecchH--HH-HHHHHHHHHHhcEEEEEEeCCceEEEEECC-CCEEEEEEEEC-HHhCeEEEeC----CCeEEEEEH
Confidence 999999877 54 899999999999999999999999998764 23344444454 4589999996 357899999
Q ss_pred cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecc--eeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCe
Q 038838 83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGY--KSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPT 155 (284)
Q Consensus 83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~--~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~ 155 (284)
..|. .+.+.+.++|++...+ +.|.|.+.+. .+..++.+++ +.... ++|..| . ..+.
T Consensus 73 ~~l~kil~~~~~~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~rl---ie~~~-~~~~iP-----~~~~~~ 135 (261)
T 1u7b_A 73 TSMSKILKCAGNEDIITLRAEDNA--------DTLALVFEAPNQEKVSDYEMKL---MDLDV-EQLGIP-----EQEYSC 135 (261)
T ss_dssp HHHHHHHTTSCTTCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEEEC---CCCCC-CCCBCC-----CCCCSE
T ss_pred HHHHHHHhcCCCCCEEEEEecCCC--------CEEEEEEEcCCCCeEEEEEEEC---ccCCc-ccCCCC-----CCcccE
Confidence 9888 3345677999986533 6888888754 3445555554 44333 445455 2 3456
Q ss_pred EEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCC
Q 038838 156 LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISR 235 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (284)
.+.||+ +.|+.+++|+..+|+.|+|+++. |.++|..++|..+..++|....++. ..++.. + ...
T Consensus 136 ~i~~~~-~~l~~ai~r~~~~s~~v~i~~~~-~~l~ls~~~d~g~~~~~~~~~~~~~------~~~~~~---~-----~~~ 199 (261)
T 1u7b_A 136 VVKMPS-GEFARICRDLSHIGDAVVISCAK-DGVKFSASGELGNGNIKLSQTSNVD------KEEEAV---T-----IEM 199 (261)
T ss_dssp EEEEEH-HHHHHHHHHHHTTCSEEEEEEET-TEEEEEEEETTEEEEEEECCCC----------CCSCC---E-----EEE
T ss_pred EEEEEH-HHHHHHHHHHHhcCCEEEEEEEC-CEEEEEEEecCceEEEEEecCCCCC------CCccce---E-----Eec
Confidence 888998 78999999999999999999986 6899999999999999998766432 111100 0 111
Q ss_pred CCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE-------EEEEEEe
Q 038838 236 GDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT-------VIFQFFI 281 (284)
Q Consensus 236 ~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~-------~~l~y~i 281 (284)
|+..++..+.|.|..+|.+..+ ...+.+.+.+++-+++ ..++||+
T Consensus 200 ~e~~~i~f~~~yL~~~lka~~~-s~~V~i~~~~~~P~~l~~~~~~~~~~~y~l 251 (261)
T 1u7b_A 200 NEPVQLTFALRYLNFFTKATPL-SSTVTLSMSADVPLVVEYKIADMGHLKYYL 251 (261)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGG-CSEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred CCcEEEEEeHHHHHHHhCcccC-CCeEEEEECCCCCEEEEEEeCCCcEEEEEE
Confidence 3568999999999999988665 6778888888776665 3477777
No 4
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.66 E-value=2.6e-14 Score=129.97 Aligned_cols=239 Identities=12% Similarity=0.178 Sum_probs=174.9
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.+.. .| ++++.++..+-+.|.+.++++.+.++.++.. .-.++-..++ ...|++|+++. .|.+.++.
T Consensus 22 f~a~~~~~~--~l-k~ii~~~~~il~~v~~~~~~~gl~~vAtD~~-rla~~~~~l~-~~~f~~y~~~~----~i~~~i~l 92 (276)
T 2zvv_A 22 LELRLVQGS--LL-KKVLESIKDLVNDANFDCSSTGFSLQAMDSS-HVALVSLLLR-SEGFEHYRCDR----NLSMGMNL 92 (276)
T ss_dssp EEEEESCTH--HH-HHHHHHHTTTCSEEEEEEETTEEEEEEECTT-SSEEEEEEEE-GGGSSEEEESS----CEEEEEEH
T ss_pred EEEEeCChH--HH-HHHHHHHHHHhceEEEEEECCeEEEEEECCC-CEEEEEEEEC-hhhCcEEEcCC----CEEEEEEH
Confidence 999999876 55 8999999999999999999999999987642 3334444444 45899999974 47799999
Q ss_pred cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCeEE
Q 038838 83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPTLV 157 (284)
Q Consensus 83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~~i 157 (284)
..|. .+.+.+.++|++...+ ..|.|.+.+.....+...-++ ++.... ++|..| . ..+..+
T Consensus 93 ~~l~kilk~~~~~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~r-Lid~~~-p~~~iP-----~~~~~~~i 157 (276)
T 2zvv_A 93 GNMSKMLKCAGNDDIITIKADDGG--------DTVTFMFESPTQDKIADFEMK-LMDIDS-EHLGIP-----DAEYHSIV 157 (276)
T ss_dssp HHHHHHHHTSCTTCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEEE-CCCEEC-CCCCCC-----CCCCSEEE
T ss_pred HHHHHHHhhCCCCCeEEEEEcCCC--------CeEEEEEEeCCCceEEEEEEE-cccCCc-ccCCCC-----CCcccEEE
Confidence 8888 3445677999996543 688888875433333344443 555444 556555 3 355688
Q ss_pred ecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCCC
Q 038838 158 QVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGD 237 (284)
Q Consensus 158 ~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 237 (284)
.||. +.|+.+++|+..+|+.|+|+++ .|.++|..++|..+.+++|....++. .+++.. + ...|+
T Consensus 158 ~~~~-~~l~~av~r~~~~sd~V~i~~~-~~~l~lsa~gd~g~~~~~l~~~~~~~------~~~~~~---~-----~~~ge 221 (276)
T 2zvv_A 158 RMPS-NEFSRICKDLSSIGDTVVISVT-KEGVKFSTAGDIGTANIVLRQNTTVD------KPEDAI---V-----IEMKE 221 (276)
T ss_dssp EEEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEEETTEEEEEEECCCSSCC------SGGGCC---E-----EEESS
T ss_pred EEEH-HHHHHHHHHHHhhCCEEEEEEe-CCEEEEEEEeeccEEEEEEccCCCCC------CccccE---E-----EecCC
Confidence 8998 8999999999999999999998 56799999999999999998766422 111100 0 11135
Q ss_pred eEEEEEechhhhhhcccccccccEEEEEeecCceEEE-------EEEEEEec
Q 038838 238 AQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT-------VIFQFFIP 282 (284)
Q Consensus 238 ~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~-------~~l~y~iP 282 (284)
..++..+.|-|..+|.+..+ ...|.+.+.+++-+.+ ..++||+.
T Consensus 222 ~~~i~fn~~YL~d~lka~~l-s~~V~i~l~~~~Pl~l~~~~~~~g~~~y~la 272 (276)
T 2zvv_A 222 PVSLSFALRYMNSFTKATPL-SDTVTISLSSELPVVVEYKVAEMGYIRYYLA 272 (276)
T ss_dssp CEEEEEEHHHHHHHGGGGGG-CSEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred cEEEEEEHHHHHHHhccccC-CCEEEEEEcCCceEEEEEEeCCCcEEEEEEc
Confidence 68999999999999988765 5678888887766555 24666653
No 5
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.63 E-value=1.2e-13 Score=123.38 Aligned_cols=231 Identities=11% Similarity=0.110 Sum_probs=171.5
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|||||++.+.+ .| ++++.++.++-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.+
T Consensus 1 M~f~a~~~~~~--~~-~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~~~~~~ 71 (249)
T 1iz5_A 1 MPFEIVFEGAK--EF-AQLIDTASKLIDEAAFKVTEDGISMRAMDP-SRVVLIDLNLPSS-IFSKYEVVE----PETIGV 71 (249)
T ss_dssp -CEEEEEECHH--HH-HHHHHHHTSSCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEE
T ss_pred CcEEEEeCchH--HH-HHHHHHHHHHhcEEEEEEeCCeEEEEEECC-CcEEEEEEEECHH-hCcEEEcCC----CeEEEE
Confidence 99999999866 54 899999999999999999999999998764 2456777777654 899999964 567888
Q ss_pred eccccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCe
Q 038838 81 DISLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPT 155 (284)
Q Consensus 81 ~~~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~ 155 (284)
+...|. + +.+.+.++|++.++ +.|.|.+.+.. +.++.++ ++..+. .+|..| . ..+.
T Consensus 72 ~l~~l~kil~~~~~~~~v~i~~~~~---------~~l~f~~~~~~---~~~~~~r-lidg~~-p~~~iP-----~~~~~~ 132 (249)
T 1iz5_A 72 NLDHLKKILKRGKAKDTLILKKGEE---------NFLEITIQGTA---TRTFRVP-LIDVEE-MEVDLP-----ELPFTA 132 (249)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSS---------SEEEEEEESSS---EEEEEEE-CBCCCC------C-----CCCCCE
T ss_pred EHHHHHHHHHhCCCCCEEEEEECCC---------CeEEEEEecCC---EEEEEEE-cccCCc-cCCCCC-----CCcceE
Confidence 888887 3 23456688888543 27888887543 4678885 888766 778777 4 4566
Q ss_pred EEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCC
Q 038838 156 LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISR 235 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (284)
.+.+|. +.|+.+++|+..+|+.|+++++ +|.|+|+.++|..+...+|....- .. . + -..
T Consensus 133 ~v~i~~-~~l~~a~~r~~~ls~~V~l~~~-~~~l~ls~~~d~g~~~~~l~~~~~------~~-~-------~-----~~~ 191 (249)
T 1iz5_A 133 KVVVLG-EVLKAAVKAASLVSDSIKFIAR-ENEFIMKAEGETQEVEIKLTLEDE------GL-L-------D-----IEV 191 (249)
T ss_dssp EEEEEH-HHHHHHHHHHTTTCSEEEEEEE-TTEEEEEEECSSCEEEEEEETTTT------SS-S-------E-----EEE
T ss_pred EEEEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEecCceEEEEEccCCC------cc-E-------E-----EEc
Confidence 888997 8999999999999999999998 568999998898999999875420 00 0 0 011
Q ss_pred CCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE-------EEEEEEe
Q 038838 236 GDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT-------VIFQFFI 281 (284)
Q Consensus 236 ~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~-------~~l~y~i 281 (284)
|+..++..+.|-|..+|..-.+ ...+.+.+.+++.+.+ ..++||+
T Consensus 192 ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i 243 (249)
T 1iz5_A 192 QEETKSAYGVSYLSDMVKGLGK-ADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 243 (249)
T ss_dssp SSCEEEEEEHHHHHHHHTTSCT-TCEEEEEECTTCCEEEEEEETTTEEEEEEE
T ss_pred CCceEEEEeHHHHHHHhhhccC-CCeEEEEEcCCCCEEEEEEeCCCcEEEEEE
Confidence 2458999999999999987654 5677777777766555 2466776
No 6
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.55 E-value=1.6e-12 Score=115.78 Aligned_cols=221 Identities=9% Similarity=0.054 Sum_probs=168.6
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|||||+ +. ..|++++.++..+-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.+
T Consensus 1 M~fr~~--~~---~~lk~~i~~~~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~ 69 (246)
T 3aiz_C 1 MRVKVI--DA---DAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDP-SRVTFIDILIPAG-YFEEYNVEK----EEKVGV 69 (246)
T ss_dssp CEEEES--CH---HHHHHHHHHHTTTCSEEEEEECSSEEEEEEECT-TSCEEEEEEEEGG-GSSEEECSS----CEEEEE
T ss_pred CceEEe--cH---HHHHHHHHHHHHHhcEEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCcEEEcCC----CeEEEE
Confidence 999999 43 345899999999999999999999999998764 2456777777654 889999863 577889
Q ss_pred eccccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCe
Q 038838 81 DISLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPT 155 (284)
Q Consensus 81 ~~~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~ 155 (284)
++..|. + +.+.+.++|++ . + ...|.|.+.+.. +.++.++ ++..+. .+|..| . ..+.
T Consensus 70 ~l~~l~kiL~~~~~~~~v~i~~-~-~-------~~~l~~~~~~~~---~~~~~~r-lidg~~-p~~~iP-----~~~~~~ 130 (246)
T 3aiz_C 70 KLEDFTDVLKTVTKNDSLYLET-D-E-------NQNIKVTLDGVY---ERTFTFP-SIVASE-IETPNL-----NLEFPF 130 (246)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEE-C-S-------SSCEEEEEESSS---EEEEEEC-CCCCCC-CCCSCS-----CCCCSE
T ss_pred EHHHHHHHHhhCCCCCEEEEEE-C-C-------CCeEEEEEecCc---EEEEEEE-cccCCc-ccCCCC-----CCcccE
Confidence 988887 3 23466788988 2 2 147888887543 4678886 888766 777777 3 4566
Q ss_pred EEecCChhhHhHHHHhhhhc-CCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcC
Q 038838 156 LVQVPDLNQLQNFVDWMKHV-GDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAIS 234 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~l-s~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~ 234 (284)
.+.+|. +.|+.+++|+..+ |+.|.++++ +|.|+|..++|..+...+|....- ... + - +
T Consensus 131 ~i~i~~-~~l~~a~~r~~~l~s~~V~l~~~-~~~l~ls~~~d~g~~~~~l~~~~~------~~~-~-------~--~--- 189 (246)
T 3aiz_C 131 KAKALT-VTFTDIIDEIEDIGGDSITFKAE-GGKLYLSANSDMGSSTIELSTENG------GLL-E-------S--E--- 189 (246)
T ss_dssp EEEEEH-HHHHHHHHHHHHHCCSEEEEEEE-TTEEEEEEECSSCEEEEEECTTTT------SCS-E-------E--E---
T ss_pred EEEEEH-HHHHHHHHHHhhCCCCEEEEEEE-CCEEEEEEEcCCceEEEEEecCCC------ccE-E-------E--E---
Confidence 888997 8899999999999 999999998 568999998898999999875420 000 0 0 0
Q ss_pred CCCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE
Q 038838 235 RGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT 274 (284)
Q Consensus 235 ~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~ 274 (284)
|+..++..+.|-|..+|..-.+ ...+.+.+.+++.+.+
T Consensus 190 -ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i 227 (246)
T 3aiz_C 190 -GGDAESVYGLEYVVNTSKMRKP-SDTVEIAFGSQIPLKL 227 (246)
T ss_dssp -ECCEEEEEEHHHHHTTGGGTTT-CSEEEEEEETTEEEEE
T ss_pred -EeeEEEEEEHHHHHHHhhhccC-CCeEEEEecCCCcEEE
Confidence 1358999999999999987654 5678888887766555
No 7
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.47 E-value=3.5e-12 Score=113.69 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=166.4
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.+.+ .| ++++.+++++-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.++.
T Consensus 2 f~a~~~~~~--~~-k~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 72 (248)
T 3aiz_A 2 IKATYSSAK--DF-YSLLSGLLKVTDEIILNFTEDSIFSRYLTD-DKVLMVIFKIPKE-YLEDYTIDK----PLGIKINI 72 (248)
T ss_dssp CEEEESCHH--HH-HHHHTTCTTCCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GCEEEECSS----CEEEEEEH
T ss_pred eEEEecchH--HH-HHHHHHHHHHHheEEEEEccCcEEEEEECC-CCEEEEEEEECHH-hCceEEcCC----CeEEEEEH
Confidence 999999877 55 899999999999999999999999998764 3456777777654 889999964 47789998
Q ss_pred cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEec--ceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCe
Q 038838 83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKG--YKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPT 155 (284)
Q Consensus 83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g--~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~ 155 (284)
..|. .+ +.+.++|++.+.+ ..|.|.+.+ ..+..++.+++ +-... .+|..| . ..+.
T Consensus 73 ~~l~kil~~~-~~~~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~rl---idg~~-p~~~iP-----~~~~~~ 134 (248)
T 3aiz_A 73 NDLKKILGKA-KSKSATVTLEETE--------AGLKVTVRDEKTGTRSNIYIKG---EKTSI-DQLTEP-----KVNLSV 134 (248)
T ss_dssp HHHHHHHHTC-SSTTCEEEEEECS--------SEEEEEEEETTTTEEEEEEEEC---EEECC-CCCCCC-----CCCCSE
T ss_pred HHHHHHHhhc-CCCEEEEEEeCCC--------CeEEEEEEeCCCCEEEEEEEEc---cccCc-ccCCCC-----CCCccE
Confidence 8887 33 5567999998764 577777764 33444555444 44333 556666 3 3556
Q ss_pred EEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCC
Q 038838 156 LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISR 235 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (284)
.+.+|+ +.|+.+++|+..+|+.|+++++ +|.|+|..++|..+.+.+|..-. + .. + -..
T Consensus 135 ~v~~~~-~~l~~av~r~~~~s~~V~i~~~-~~~l~ls~~~d~g~~~~~~~~~~-~------~~--------~-----~~~ 192 (248)
T 3aiz_A 135 TFTTDG-DVLKDIARDLSLVGEEVEISAD-ENTVTLSTEEAGRTYKSLLKQDK-P------LK--------S-----LNV 192 (248)
T ss_dssp EEEECH-HHHHHHHHHHTTSCSEEEEEEC-SSEEEEEEEETTEEEEEEEEETB-E------ES--------E-----EEE
T ss_pred EEEEeH-HHHHHHHHHHHhcCCEEEEEEe-CCEEEEEEEccCceEEEEEcCCC-c------ce--------E-----Eec
Confidence 888998 8999999999999999999997 56899999889999888886411 0 00 0 011
Q ss_pred CCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE
Q 038838 236 GDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT 274 (284)
Q Consensus 236 ~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~ 274 (284)
|+..++..+.|-|..+|..-.+ ...+.+.+.+++.+.+
T Consensus 193 ge~~~i~fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i 230 (248)
T 3aiz_A 193 ESPSKAVYSIEVLKDVFKVTSI-SQNVTVGFGNNIPMKI 230 (248)
T ss_dssp SSCEEEEEEHHHHHHHHHHGGG-CSSEEEEEETTEEEEE
T ss_pred CCceEEEEEHHHHHHHhhhccC-CCeEEEEEcCCCCEEE
Confidence 2458999999999999988655 5567777777655544
No 8
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.44 E-value=3e-11 Score=108.91 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=158.5
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|+|||++.+.+ .| ++++.+++++-..|.+.++++.+.+...+. ..-.++...++.+ .|++|+++. .|.+-+
T Consensus 1 m~f~a~~~~a~--~l-k~ii~ai~~i~~~v~~~~~~~gl~~~A~D~-~rvalv~~~l~~~-~F~~y~~~~----~~~igi 71 (259)
T 3lx2_A 1 MTFEIVFDSAR--EF-ESLIATLEKFFDEAVFQVNMEGIQMRAIDP-SRVVLVDLNLPEM-LFSKYSVES----EEAIAF 71 (259)
T ss_dssp -CEEEEESCHH--HH-HHHHHHHHTTCSEEEEEECSSEEEEEEECT-TSCEEEEEEEEGG-GSSEEEESS----CEEEEE
T ss_pred CeEEEEECcHH--HH-HHHHHHHHHHhceEEEEEecCeEEEEEECC-CCEEEEEEEEChH-hcEEEEcCC----CEEEEE
Confidence 99999999877 55 899999999999999999999999998663 3667899999887 799999973 377889
Q ss_pred eccccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCCCCCeE
Q 038838 81 DISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTL 156 (284)
Q Consensus 81 ~~~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p~~~ 156 (284)
++..|. .+.+.+.++|+ ...+ ..|.|.+++.. .....++ ++-... +++..|- ...+..
T Consensus 72 ~l~~L~kiLk~~~~~d~v~i~--~~~~-------~~l~~~~e~~~-~~~~~~r---Lid~~~-~~~~iP~----~e~~~~ 133 (259)
T 3lx2_A 72 DLKRFLKVLKLARSRDTLVLR--KGGE-------NFLEVGLLGDE-NTWFKLP---LIDANT-PEIEIPS----LPWTVK 133 (259)
T ss_dssp EHHHHHHHHTTCCTTCEEEEE--ECSS-------SEEEEEEESSS-EEEEEEE---CCCCCC-CCCCCCC----CCCCEE
T ss_pred EHHHHHHHHHhcCCCCEEEEE--ECCC-------CEEEEEEecCc-eEEEEEE---eeccCc-ccCCCCC----CceeEE
Confidence 999988 34445667776 3322 67888888654 2334444 444443 2344441 122347
Q ss_pred EecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 157 VQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 157 i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
+.||+ +.|+.+++|+..+|+.|+|+++. +.++|+.++|..++.+.+..=. ++.. ....+
T Consensus 134 v~~~s-~~f~~~i~~~~~~sd~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~-----------~~~~--------~~~~~ 192 (259)
T 3lx2_A 134 AVVLA-GALKRAVKAAKLVSDSIYFMATP-EKLTFKAEGNDSEVRTVLTMED-----------PGLL--------DLEHK 192 (259)
T ss_dssp EEEEH-HHHHHHHHHHHHHCSEEEEEECS-SCEEEEEECSSCEEEEEECTTS-----------TTEE--------EEEES
T ss_pred EEEEH-HHHHHHHHHHHhcCCEEEEEEEC-CEEEEEEEecCcEEEEEEcCCC-----------CceE--------EEEec
Confidence 77997 89999999999999999999985 5799999888888888886310 0000 00112
Q ss_pred -CeEEEEEechhhhhhcccccccccEEEEEeecCce
Q 038838 237 -DAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVA 271 (284)
Q Consensus 237 -~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~ 271 (284)
+.++...+.|-|..++..-... +.|...+.++.-
T Consensus 193 ~e~~~~~F~~~YL~~~~Ka~~~s-~~V~l~~~~~~P 227 (259)
T 3lx2_A 193 MTKAKSAYGVAYLEDILRSLADA-DEVIIRFGFDIP 227 (259)
T ss_dssp SSCEEEEEEHHHHHHHHSSSCTT-SEEEEEECTTSC
T ss_pred CceEEEEEEHHHHHhhhccccCC-CeEEEEeCCCCC
Confidence 3478888999999888764332 255555555544
No 9
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.38 E-value=5.7e-11 Score=105.51 Aligned_cols=221 Identities=11% Similarity=0.074 Sum_probs=163.6
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.|.+ .| ++++.+++++-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.++.
T Consensus 1 ~~a~~~~a~--~~-~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 71 (244)
T 2ijx_A 1 MKVVYDDVR--VL-KDIIQALARLVDEAVLKFKQDSVELVALDR-AHISLISVNLPRE-MFKEYDVND----EFKFGFNT 71 (244)
T ss_dssp CEEEESCHH--HH-HHHHHHHHHHCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GCSEEECSS----CEEEEEEH
T ss_pred CEEEECchH--HH-HHHHHHHHHHhceEEEEEecCeEEEEEECC-CcEEEEEEEECHH-hCceEEcCC----CEEEEEEH
Confidence 799999865 54 899999999999999999999999998764 2456777777654 899999864 47788998
Q ss_pred cccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCeEE
Q 038838 83 SLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPTLV 157 (284)
Q Consensus 83 ~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~~i 157 (284)
..|. + +.+.+.++|++...+ ..+.|.+.+. ..++.++ ++-... .+|..| . ..+..+
T Consensus 72 ~~l~kiL~~~~~~~~v~i~~~~~~--------~~l~~~~~~~--~~~~~~r---lidg~~-p~~~iP-----~~~~~~~i 132 (244)
T 2ijx_A 72 QYLMKILKVAKRKEAIEIASESPD--------SVIINIIGST--NREFNVR---NLEVSE-QEIPEI-----NLQFDISA 132 (244)
T ss_dssp HHHHHHHTTCCSSCEEEEEEEETT--------EEEEEEESSS--EEEEEEE---CCCCCC-CCCCCC-----CCCCSEEE
T ss_pred HHHHHHHhhCCCCCEEEEEecCCC--------CEEEEEECCE--EEEEEEE---CCccCc-ccCCCC-----CCcccEEE
Confidence 8887 3 234667999997754 6788888432 3344443 444433 556666 3 355688
Q ss_pred ecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCCC
Q 038838 158 QVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGD 237 (284)
Q Consensus 158 ~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 237 (284)
.+|+ +.|+.+++|+..+|+.|+++++ +|.|+|..++|..+ +.+|..-. + +.. + -..|+
T Consensus 133 ~i~~-~~l~~a~~r~~~~s~~V~l~~~-~~~l~ls~~~d~g~-~~~l~~~~--------~---~~~---~-----~~~ge 190 (244)
T 2ijx_A 133 TISS-DGFKSAISEVSTVTDNVVVEGH-EDRILIKAEGESEV-EVEFSKDT--------G---GLQ---D-----LEFSK 190 (244)
T ss_dssp EEEH-HHHHHHHHHHTTTCSEEEEEEE-TTEEEEEETTCTTS-EEEEETTT--------T---CEE---E-----EEESS
T ss_pred EEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEecCce-EEEEeCCC--------C---ccE---E-----EEcCC
Confidence 8997 8899999999999999999998 56899998888888 88886410 0 000 0 11124
Q ss_pred eEEEEEechhhhhhcccccccccEEEEEeecCceEEE
Q 038838 238 AQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT 274 (284)
Q Consensus 238 ~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~ 274 (284)
..++..+.|-|..+|..-.+ ...+.+.+.+++.+.+
T Consensus 191 ~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i 226 (244)
T 2ijx_A 191 ESKNSYSAEYLDDVLSLTKL-SDYVKISFGNQKPLQL 226 (244)
T ss_dssp CEEEEEEHHHHHHTGGGGGG-CSEEEEEEETTEEEEE
T ss_pred ceEEEEEHHHHHHHhhhccC-CCEEEEEEcCCCCEEE
Confidence 68999999999999988665 5678788877765554
No 10
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.37 E-value=4e-11 Score=106.62 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=162.3
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.|.+ .| ++++.+++++-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.+++
T Consensus 1 f~a~~~~~~--~~-k~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 71 (245)
T 1ud9_A 1 AHIVYDDVR--DL-KAIIQALLKLVDEALFDIKPEGIQLVAIDK-AHISLIKIELPKE-MFKEYDVPE----EFKFGFNT 71 (245)
T ss_dssp CEEEESCHH--HH-HHHHHHHHHHCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEECSS----CEEEEEEH
T ss_pred CEEEeCchH--HH-HHHHHHHHHHhceEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCeEEEcCC----CeEEEEEH
Confidence 899999876 54 899999999999999999999999998764 2456777777654 889999864 47788888
Q ss_pred cccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCeEE
Q 038838 83 SLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPTLV 157 (284)
Q Consensus 83 ~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~~i 157 (284)
..|. + +.+.+.++|++...+ +.|.|.+.+. ..++.++ ++-... .+|..| + ..+..+
T Consensus 72 ~~l~kiL~~~~~~~~v~i~~~~~~--------~~l~~~~~~~--~~~~~~r---lidg~~-p~~~ip-----~~~~~~~i 132 (245)
T 1ud9_A 72 QYMSKLLKAAKRKEEIIIDADSPE--------VVKLTLSGAL--NRVFNVN---NIEVLP-PEVPEV-----NLEFDIKA 132 (245)
T ss_dssp HHHHHHHTTCCSCCCEEEEEEETT--------EEEEEECSSS--CEEEEEE---CCCCCC-CCCC--------CCCSEEE
T ss_pred HHHHHHHhcCCCCCEEEEEEcCCC--------CEEEEEECCE--EEEEEEE---CcccCc-ccCCCC-----CCCccEEE
Confidence 8887 3 234567999997653 6888888542 2334433 444433 556666 3 456688
Q ss_pred ecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCCC
Q 038838 158 QVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGD 237 (284)
Q Consensus 158 ~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 237 (284)
.+|+ +.|+..++|+..+|+.|+++++ +|.|+|..++|..+ +.+|..-. + +.. + -..|+
T Consensus 133 ~i~~-~~l~~a~~r~~~~s~~V~l~~~-~~~l~ls~~~d~g~-~~~l~~~~-------~----~~~---~-----~~~ge 190 (245)
T 1ud9_A 133 TINA-SGLKNAIGEIAEVADTLLISGN-EEKVVVKGEGENKV-EVEFSKDT-------G----SLA---D-----IEFNK 190 (245)
T ss_dssp EEEH-HHHHHHHHHHHHHCSEEEEEEC-SSEEEEEESSSSCC-CEEEEGGG-------T----CEE---E-----EEESS
T ss_pred EEeH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCce-EEEEecCC-------C----ccE---E-----EEeCC
Confidence 8997 8899999999999999999997 56899998888888 88886410 0 000 0 11124
Q ss_pred eEEEEEechhhhhhcccccccccEEEEEeecCceEEE
Q 038838 238 AQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT 274 (284)
Q Consensus 238 ~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~ 274 (284)
..++..+.|-|..+|..-.+ ...+.+.+.+++.+.+
T Consensus 191 ~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i 226 (245)
T 1ud9_A 191 ESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKPMQL 226 (245)
T ss_dssp CEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSCEEE
T ss_pred ceeEEEEHHHHHHHhhhccc-CCEEEEEEcCCCCEEE
Confidence 68999999999999988655 5677777777766555
No 11
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.32 E-value=8.8e-10 Score=97.94 Aligned_cols=217 Identities=10% Similarity=0.068 Sum_probs=160.4
Q ss_pred eEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEecc
Q 038838 4 KAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDIS 83 (284)
Q Consensus 4 rA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~~ 83 (284)
||++.+.+ .| ++++.++..+-+.|.+.++++.++++.++. ..-.+++..++.+ .|++|+++. .|.+.+++.
T Consensus 2 ~~~~~~~~--~~-~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l~ 72 (245)
T 1rwz_A 2 IDVIMTGE--LL-KTVTRAIVALVSEARIHFLEKGLHSRAVDP-ANVAMVIVDIPKD-SFEVYNIDE----EKTIGVDMD 72 (245)
T ss_dssp EEEEEEHH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEEEHH
T ss_pred eEEecchH--HH-HHHHHHHHHHhceEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCceEEcCC----CeEEEEEHH
Confidence 67777655 55 899999999999999999999999998764 2456777777654 889999964 577888988
Q ss_pred ccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCC-CCCeEEe
Q 038838 84 LLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQD-LPPTLVQ 158 (284)
Q Consensus 84 ~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~-~p~~~i~ 158 (284)
.|. + +.+.+.++|++..+ . .|.|.+.+ .+.++.++ ++..+. .+|..| . ..+..+.
T Consensus 73 el~kiL~~~~~~~~v~i~~~~~--------~-~l~~~~~~----~~~~~~~r-lidg~~-p~~~iP-----~~~~~~~v~ 132 (245)
T 1rwz_A 73 RIFDISKSISTKDLVELIVEDE--------S-TLKVKFGS----VEYKVALI-DPSAIR-KEPRIP-----ELELPAKIV 132 (245)
T ss_dssp HHHHHHTTSCTTSEEEEEESSS--------S-EEEEEETT----EEEEEECB-CGGGSC-CCCCCC-----CCCCSEEEE
T ss_pred HHHHHHhhCCCCCEEEEEECCC--------C-eEEEEEee----eEEEEEEE-ccccCc-cCCCCC-----CCcccEEEE
Confidence 887 3 23456688887332 2 77888775 25688896 888766 677766 3 4566888
Q ss_pred cCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCCCe
Q 038838 159 VPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDA 238 (284)
Q Consensus 159 LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 238 (284)
+|. +.|+..++|+..+|+.|.++++ +|.|+|..++|..++...... +... + -..++
T Consensus 133 ~~~-~~l~~av~r~~~ls~~V~l~~~-~~~l~ls~~~d~g~~~~~~~~-------------e~~~---~-----~~g~~- 188 (245)
T 1rwz_A 133 MDA-GEFKKAIAAADKISDQVIFRSD-KEGFRIEAKGDVDSIVFHMTE-------------TELI---E-----FNGGE- 188 (245)
T ss_dssp EEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEECSSCEEEEEECG-------------GGSS---E-----ECCCC-
T ss_pred EEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCcEEEEecCC-------------CccE---E-----EEEee-
Confidence 997 8899999999999999999998 568999988887775543331 0000 0 11123
Q ss_pred EEEEEechhhhhhcccccccccEEEEEeecCceEEE
Q 038838 239 QSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT 274 (284)
Q Consensus 239 ~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~ 274 (284)
.++..+.|-|..+|..-.+ ...+.+.+.+++.+.+
T Consensus 189 ~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i 223 (245)
T 1rwz_A 189 ARSMFSVDYLKEFCKVAGS-GDLLTIHLGTNYPVRL 223 (245)
T ss_dssp EEEEEEHHHHHHHGGGCCT-TCEEEEEECSSSCEEE
T ss_pred EEEEEeHHHHHHHhhhccC-CCeEEEEECCCCCEEE
Confidence 8999999999999987654 5667777776665544
No 12
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.08 E-value=3.7e-08 Score=87.74 Aligned_cols=220 Identities=12% Similarity=0.090 Sum_probs=155.2
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|||++.+.. .| ++++.+++++-..|.+.++++.+.+...+. ..-.++-..++.+ .|++|+++. +.+.+-+++
T Consensus 2 ~~a~~~~a~--~~-k~i~~ai~~i~~~~~~~~~~~gl~~~A~D~-~rval~~~~l~~~-~F~~y~~~~---~~~i~gi~l 73 (245)
T 3fds_D 2 MKAKVIDAV--SF-SYILRTVGDFLSEANFIVTKEGIRVSGIDP-SRVVFLDIFLPSS-YFEGFEVSQ---EKEIIGFKL 73 (245)
T ss_dssp EEEEESCHH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GEEEEEESS---SCEEEEEEH
T ss_pred EEEEeCcHH--HH-HHHHHHHHHHhceEEEEEcCCeEEEEEECC-CCEEEEEEEEChH-hCEEEEeCC---ccEEEEEEH
Confidence 999999866 55 899999999999999999999999998763 3567888888876 899999973 444477888
Q ss_pred cccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCCCCCeEEe
Q 038838 83 SLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQ 158 (284)
Q Consensus 83 ~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p~~~i~ 158 (284)
..|. + +.+.+.++|++ .+ --|.|.+.+.. +.+.=.+ ++-... ++|..|- ...+..+.
T Consensus 74 ~~l~kiL~~~~~~d~v~i~~---~~-------~~l~~~~~~~~---~~~~~~r-Lid~~~-~~~~iP~----~~~~~~v~ 134 (245)
T 3fds_D 74 EDVNDILKRVLKDDTLILSS---NE-------SKLTLTFDGEF---TRSFELP-LIQVES-TQPPSVN----LEFPFKAQ 134 (245)
T ss_dssp HHHHHHHTTCCTTCEEEEEE---CS-------SEEEEEEESSS---EEEEEEE-CCCCCC-CCC--------CCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEE---eC-------CEEEEEEecCc---eEEEEEE-eecCCc-ccCCCCC----cceEEEEE
Confidence 8887 3 44567788888 22 24778877653 2455553 565544 4454451 12334777
Q ss_pred cCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCCCe
Q 038838 159 VPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDA 238 (284)
Q Consensus 159 LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 238 (284)
||+ ..|+.+++|+..+|+.|+|+++.+ .++++.+.|..+....+.. +. +... + .. |+.
T Consensus 135 ~~s-~~f~~~i~~~~~~s~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~--------~~---~~~~-------~-~~-~e~ 192 (245)
T 3fds_D 135 LLT-ITFADIIDELSDLGEVLNIHSKEN-KLYFEVIGDLSTAKVELST--------DN---GTLL-------E-AS-GAD 192 (245)
T ss_dssp EEH-HHHHHHHHHHTTTCSEEEEEEETT-EEEEEEECSSCEEEEEECT--------TS---SSCS-------E-EE-ECC
T ss_pred EEH-HHHHHHHHHHHhcCCEEEEEEeCC-EEEEEEEecCcEEEEEEcC--------CC---CceE-------E-Ee-cce
Confidence 886 789999999999999999999975 5999888888888877764 00 0000 0 00 235
Q ss_pred EEEEEechhhhhhcccccccccEEEEEeecCceE
Q 038838 239 QSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVAC 272 (284)
Q Consensus 239 ~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~ 272 (284)
++...+.|-|..++..-.+. ..|...+.++.-+
T Consensus 193 ~~~~F~~~YL~~~~ka~~~s-~~V~i~~~~~~Pl 225 (245)
T 3fds_D 193 VSSSYGMEYVANTTKMRRAS-DSMELYFGSQIPL 225 (245)
T ss_dssp CEEEEEHHHHHHGGGGGGTC-SEEEEEECTTSCE
T ss_pred EEEEEEHHHHHHHhhhcccC-CEEEEEecCCccE
Confidence 78889999999998664432 3555666655543
No 13
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=99.04 E-value=1.4e-08 Score=91.15 Aligned_cols=229 Identities=12% Similarity=0.119 Sum_probs=156.9
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|+|++.+.. .| ++++.+++++-..|.+.++++-+.+..-+ .+.-.++-..++.+ .|++|+++ ..+.+-+++
T Consensus 2 f~a~~~~a~--~l-k~ii~ai~~lv~e~~~~~~~~Gi~l~amD-~s~valv~l~l~~~-~F~~Y~~d----~~~~~gvnl 72 (249)
T 3fds_C 2 VKIVYPNAK--DF-FSFINSITNVTDSIILNFTEDGIFSRHLT-EDKVLMAIMRIPKD-VLSEYSID----SPTSVKLDV 72 (249)
T ss_dssp CEEEESCHH--HH-HHHHHHHTTTCSSEEEEECSSEEEEEEEC-TTSSEEEEEEEEGG-GSSEEECS----SCEEEEECH
T ss_pred EEEEeCchH--HH-HHHHHHHHHHhCeEEEEEcCCeEEEEEEC-CCcEEEEEEEECHH-hCeEEECC----CCeEEEEEH
Confidence 899998866 55 89999999999999999999999998644 34678999999988 99999996 347788999
Q ss_pred cccc---CcCC-CceeEEEEeecCCCCCCCCcceEEEEEec--ceeEEEEeccCCcccCHHHHhhhhhhhhccCCCC-Ce
Q 038838 83 SLLQ---PGSA-ANCLQIKLVKKLPPNCTQAMPFLTFETKG--YKSAVIQDVPISKPLSRAQVLELQTALDMAQDLP-PT 155 (284)
Q Consensus 83 ~~L~---sa~~-a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g--~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p-~~ 155 (284)
+.|. +..+ ..+ +|++.... ..|.+.+++ ..+.-...+|.-. +.. +++..| +.. +.
T Consensus 73 ~~l~kiLk~~~~~~d-~l~~~~~~--------~~l~i~~e~~~~~~~~~~~l~l~d-~~~---e~~~~p-----~~e~~~ 134 (249)
T 3fds_C 73 SSVKKILSKASSKKA-TIELTETD--------SGLKIIIRDEKSGAKSTIYIKAEK-GQV---EQLTEP-----KVNLAV 134 (249)
T ss_dssp HHHHHHHTTCCCSCE-EEEEEECS--------SEEEEEEEETTTCCEEEEEEECEE-CCC---CCCCCC-----CCCCCE
T ss_pred HHHHHHHHhhCCCCC-EEEEecCC--------CEEEEEEEeCCCCEEEEEEEECCC-Ccc---ccCCCC-----CCcceE
Confidence 9998 4444 334 88886543 457777764 3445556666531 111 334344 221 23
Q ss_pred EEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCC
Q 038838 156 LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISR 235 (284)
Q Consensus 156 ~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (284)
.+.||+ ..|+.++..+..+|+.++|+++.+ .+.|..+.+..+..+.+.. . . +..+ ...
T Consensus 135 ~v~m~s-~~f~~~~~dl~~~sd~v~i~~~~~-~~~f~~~gd~~~~~~~~~~-~------~-~l~~------------~~~ 192 (249)
T 3fds_C 135 NFTTDE-SVLNVIAADVTLVGEEMRISTEED-KIKIEAGEEGKRYVAFLMK-D------K-PLKE------------LSI 192 (249)
T ss_dssp EEEECH-HHHHHHHHHHHHHCSEEEEEEETT-EEEEEEEETTEEEEEEEEE-T------B-EESE------------EEE
T ss_pred EEEEEH-HHHHHHHHHHHHhCCEEEEEEECC-EEEEEEEecCcEEEEEEcC-C------C-CcEE------------EEc
Confidence 666886 689999999999999999999976 5889998887776666642 0 0 0000 000
Q ss_pred CCeEEEEEechhhhhhcc-cccccccEEEEEeecCceEEE-------EEEEEEe
Q 038838 236 GDAQSVQVSVKHFSKSLQ-CHLAKLDCAFYGIAPQVACLT-------VIFQFFI 281 (284)
Q Consensus 236 ~~~~~V~Vd~k~l~~~L~-~~~~~p~~~~c~I~~~~~~~~-------~~l~y~i 281 (284)
++.++.+...|-|..+.. .-.+. ..|...+.++.-+.+ ..++||+
T Consensus 193 ~~~~~~~fsl~yL~~~~K~a~~ls-~~V~i~~~~~~Pl~l~y~i~~~G~l~f~l 245 (249)
T 3fds_C 193 DTSASSSYSAEMFKDAVKGLRGFS-APTMVSFGENLPMKIDVEAVSGGHMIFWI 245 (249)
T ss_dssp SSCCEEEEEHHHHHHHHHTTTTCC-SCEEEEECTTCCEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEEHHHHHHHHhhhcccC-CEEEEEecCCcCEEEEEEeCCCcEEEEEE
Confidence 134777889999988887 54332 344455555544333 2456665
No 14
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=99.00 E-value=2e-07 Score=84.02 Aligned_cols=231 Identities=10% Similarity=0.091 Sum_probs=160.8
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|-|+|++.+.. .| ++++.++ ++.+.|.+.++++-+.+...+ +.-.|+-..++.+ +|++|+++ ++.+.+-+
T Consensus 3 ~~f~a~~~~a~--~l-~~il~ai-~l~~ea~~~~s~~Gi~l~a~D--s~v~~v~l~l~~~-~F~~Y~~~---~~~~~~gi 72 (263)
T 3a1j_C 3 YSLVASLDNVR--NL-STILKAI-HFREHATCFATKNGIKVTVEN--AKCVQANAFIQAG-IFQEFKVQ---EESVTFRI 72 (263)
T ss_dssp CSEEEEESCTH--HH-HHHHHTT-CSSSEEEEEEETTEEEEEEEE--TTTEEEEEEEEGG-GSSEEEES---SSCEEEEE
T ss_pred eEEEEEeCCHH--HH-HHHHhhe-ecCcEEEEEEcCCeEEEEEEe--CCEEEEEEEECHH-HCceEEEc---CCCcEEEE
Confidence 67999999876 65 8999999 999999999999999999875 5789999999999 99999997 34588999
Q ss_pred eccccc----CcCCC----ceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCCC
Q 038838 81 DISLLQ----PGSAA----NCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDL 152 (284)
Q Consensus 81 ~~~~L~----sa~~a----~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~ 152 (284)
+++.|. .+.+. +.+.++|.-.+. . --|.+.+++..+.-..+++. +...+ +|- .+.
T Consensus 73 ~l~~l~k~L~~~~~~~~~~d~~~l~i~~~~~-----~-~~l~l~~e~~~~~~~~~l~~---~~~~~-----~~d---~~f 135 (263)
T 3a1j_C 73 NLTVLLDCLSIFGSSPMPGTLTALRMCYQGY-----G-YPLMLFLEEGGVVTVCKINT---QEPEE-----TLD---FDF 135 (263)
T ss_dssp EHHHHHHHHTTTCSCCCTTCCCEEEEEECST-----T-CCEEEEEEETTEEEEEEECC---BCCCC-----CCC---CCC
T ss_pred EhHHHHHHHHHhcCCcCCCCceEEEEEECCC-----C-CcEEEEEEeCCeEEEEEEEE---EcCCc-----ccC---ccc
Confidence 999988 23333 557888765542 1 23555554333344555544 33332 131 122
Q ss_pred CC--e--EEecCChhhHhHHHHhhhhcCCEEEEEEEcCC-ceEEEEeeccEEEeEEEccCcccccccCCCCccccccccc
Q 038838 153 PP--T--LVQVPDLNQLQNFVDWMKHVGDLVNVSICKYR-DLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 227 (284)
Q Consensus 153 p~--~--~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G-~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 227 (284)
+. + .+.||+ ..|+.++.=+..+|+.|+|+++.++ .++|+.+.+..+..+.|..=. + ....
T Consensus 136 ~~~~~~~~v~m~s-~~l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~------~-~~~~------- 200 (263)
T 3a1j_C 136 CSTNVINKIILQS-EGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDS------D-LMEA------- 200 (263)
T ss_dssp CTTTEEEEEEEEG-GGGHHHHHTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEECTTC------S-SEEE-------
T ss_pred CcccceEEEEEeh-HHHHHHHHHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEcCCC------C-eEEE-------
Confidence 21 1 555886 5799999999999999999999763 699999999988888887310 0 0000
Q ss_pred hhhhhcCCCCeEEEEEechhhhhhcccccccccEEEEEeecCceEEEEEEEEEec
Q 038838 228 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIP 282 (284)
Q Consensus 228 r~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~~~l~y~iP 282 (284)
-..++.++.+-..+.|..+...-.+ .+.+...+.+++. +.+||.++
T Consensus 201 -----~~~~~~~~~~y~l~yL~~~~ka~~~-s~~v~i~~~~~~p---L~l~~~i~ 246 (263)
T 3a1j_C 201 -----FHCNQTQVNRYKISLLKPSTKALVL-SCKVSIRTDNRGF---LSLQYMIR 246 (263)
T ss_dssp -----EEECSCEEEEEEHHHHTTHHHHHHH-CSEEEEEEETTCC---EEEEEEEE
T ss_pred -----EEeCChhhcEEeHHHHHHHHhhhhh-cCEEEEEECCCee---EEEEEEEe
Confidence 0001246778888888888766443 3466677776666 45555554
No 15
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=98.98 E-value=8.7e-08 Score=98.96 Aligned_cols=237 Identities=11% Similarity=0.139 Sum_probs=165.3
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|+|++.+.. .| ++++.+++++-..|.+.++++-+++..-+ .+.-.++-..++.+ .|++|+|+. .+.+-+++
T Consensus 8 f~a~~~~a~--~~-k~ii~ai~~lv~e~~~~~t~~Gi~l~amD-~s~v~lv~l~l~~~-~F~~Y~~d~----~~~~Gvnl 78 (798)
T 3k4x_A 8 LEAKFEEAS--LF-KRIIDGFKDCVQLVNFQCKEDGIIAQAVD-DSRVLLVSLEIGVE-AFQEYRCDH----PVTLGMDL 78 (798)
T ss_dssp CEEEESCHH--HH-HHHHHHHTTTCSEEEEEEETTEEEEEEEC-SSSCCEEEEEEEGG-GSSEEECSS----CEEEEEEH
T ss_pred EEEEecchH--HH-HHHHHHHHHHhceEEEEEeCCeEEEEEEC-CCcEEEEEEEEChh-hCeEEecCC----CeEEEEEH
Confidence 999999866 55 89999999999999999999999999654 23567888888887 999999973 48899999
Q ss_pred cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecce--eEEEEeccCCcccCHHHHhhhhhhhhccCCCCCeE
Q 038838 83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYK--SAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTL 156 (284)
Q Consensus 83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~--~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p~~~ 156 (284)
+.|. .+.+.+.++|+....+ --|.+.+++.. +.-...+|. +.... +++..|- ...+..
T Consensus 79 ~~l~kiLk~~~~~d~l~l~~~~~~--------~~l~i~~e~~~~~~~~~~~l~l---~d~~~-e~l~ip~----~e~~~~ 142 (798)
T 3k4x_A 79 TSLSKILRCGNNTDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSLKL---MDIDA-DFLKIEE----LQYDST 142 (798)
T ss_dssp HHHHHHHSSSCTTSCEEEECCSSC--------SEEEEEEECSSSSEEEEEEEEC---BCCCC-CCCCCCC----SCCSEE
T ss_pred HHHHHHHhhcCCCCEEEEEEcCCC--------CeEEEEEEeCCCceEEEEEEEe---eccCc-ccCCCCC----CceeEE
Confidence 9998 4555677888875432 34777766543 333455554 44433 4565552 123347
Q ss_pred EecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 157 VQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 157 i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
+.||+ ..|+.++.-+..+|+.|+|+++.+ .++|..+.|..+..+.+..=.. ....+... .....
T Consensus 143 v~m~s-~~f~~~~~dl~~~sd~v~i~~~~~-~~~~s~~Gd~g~~~v~~~~~~~------~~~~~~~~--------~i~~~ 206 (798)
T 3k4x_A 143 LSLPS-SEFSKIVRDLSQLSDSINIMITKE-TIKFVADGDIGSGSVIIKPFVD------MEHPETSI--------KLEMD 206 (798)
T ss_dssp EEEEH-HHHHHHHHHHTTTCSEEEEEEETT-EEEEEEECSSEEEEEEECCBCC------SSCGGGCB--------EEEES
T ss_pred EEEEH-HHHHHHHHHHHhhCCEEEEEEECC-EEEEEEEecCcEEEEEEcCCCC------CCCccceE--------EEEeC
Confidence 77997 789999999999999999999975 7999999999888888874210 00000000 00011
Q ss_pred CeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEe
Q 038838 237 DAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFI 281 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~i 281 (284)
+-++.+...+-|..+...-.+.. .|...+.++.-+.+ ..++||+
T Consensus 207 e~~~~~ysl~yL~~~~Ka~~ls~-~V~l~~~~~~PL~l~y~i~~G~l~f~l 256 (798)
T 3k4x_A 207 QPVDLTFGAKYLLDIIKGSSLSD-RVGIRLSSEAPALFQFDLKSGFLQFFL 256 (798)
T ss_dssp SCEEEEEEHHHHHHHGGGGGTCS-EEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred CceeEEEEHHHHHHhhcccccCC-EEEEEeCCCCcEEEEEEECCeEEEEEE
Confidence 35778889898888887654433 55555555554333 3456654
No 16
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=98.95 E-value=1.7e-07 Score=84.52 Aligned_cols=235 Identities=11% Similarity=0.119 Sum_probs=158.2
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|+|++.+.. .| ++++.+++.+-..|.+.++++.+.+...+. +.-.++-..++.+ .|++|+++. .+.+-+++
T Consensus 7 f~a~~~~a~--~l-k~ii~ai~~i~~~v~~~~~~~gl~~~A~D~-~rvalv~~~l~~~-~F~~y~~d~----~~~igi~l 77 (265)
T 3p91_A 7 FHAKFKEAA--LF-KRVVESLKSTIDKTNFDCSDAGIAVQCMDN-SHVSLVSLLIETD-AFDEFQCLK----PITLGINL 77 (265)
T ss_dssp EEEEESCHH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSSEEEEEECGG-GEEEEECSS----CEEEEEEH
T ss_pred EEEEECchH--HH-HHHHHHHHHHhceEEEEEeCCeEEEEEECC-CcEEEEEEEEChh-hceEEEeCC----CeEEEEEH
Confidence 999999866 55 899999999999999999999999998653 3566888888877 899999863 36778899
Q ss_pred cccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEeccee-EEEEeccCCcccCHHHHhhhhhhhhccCCCCCeEE
Q 038838 83 SLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKS-AVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLV 157 (284)
Q Consensus 83 ~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~-~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p~~~i 157 (284)
..|. + +.+.+.++|++...+ --|.|.+.+... .+...++ ++.... +++..|- ...+..+
T Consensus 78 ~~L~kiLk~~~~~d~v~i~~~~~~--------~~l~~~~e~~~~~~i~~~lr---Lid~~~-~~~~iP~----~e~~~~v 141 (265)
T 3p91_A 78 THLSKILKALDNDCGLILDVKKVD--------DAVLSITSEGTNKTMKFGLN---LVDIEA-ESVEIPE----LQSDAII 141 (265)
T ss_dssp HHHHHHHTTSCTTSEEEEEECSSS--------SEEEEEEEC--CCEEEEEEE---CCCCCC-CCCCCCC----CCCSEEE
T ss_pred HHHHHHHhhcCCCCEEEEEEcCCC--------CeEEEEEEeCCCceEEEEEE---ecccCc-ccCCCCC----CCccEEE
Confidence 8888 3 445677888886543 347777764322 2344444 444443 2233331 1122377
Q ss_pred ecCChhhHhHHHHhhhhcC-CEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 158 QVPDLNQLQNFVDWMKHVG-DLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 158 ~LP~l~~l~~ivdR~k~ls-~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
.||+ ..|+.+++|+..+| +.|+|+++.+ .++|+.+++..++...+..-... ++... ....+
T Consensus 142 ~~~s-~~f~~~i~~~~~~s~d~V~i~~~~~-~v~~ss~gd~G~~~~~l~~~~~~--------~~~~~--------~~~~~ 203 (265)
T 3p91_A 142 TLSS-AEFLKITKDFSALGDDSITIGCTKN-EVTLTTKGAMCETCMTLSALENV--------DSNGL--------QIEHN 203 (265)
T ss_dssp EEEH-HHHHHHHHHHHHHCCSEEEEEECSS-EEEEEEECSSCEEEEEEEC---------------CC--------EEEES
T ss_pred EEEH-HHHHHHHHHHHhCCCCEEEEEEECC-EEEEEEEecCceEEEEEecCCCC--------CCceE--------EEEcC
Confidence 7887 78999999999999 9999999854 79999888888887777632100 00000 00112
Q ss_pred CeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEe
Q 038838 237 DAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFI 281 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~i 281 (284)
+.++.+...|-|..++..-.+. ..|...+.++.-+.+ ..++||+
T Consensus 204 e~~~~~F~~~YL~~~~Ka~~ls-~~V~i~~~~~~Pl~l~~~i~~g~~~f~l 253 (265)
T 3p91_A 204 KDVTASFALKQISEFAKSAPLA-DNVKLSLSGQAPLIMEFKGEACVLKFYL 253 (265)
T ss_dssp SCEEEEEEHHHHHHHGGGGGGC-SEEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEHHHHHHhhcccccC-CEEEEEeCCCccEEEEEEECCEEEEEEE
Confidence 3578889999999998664432 355555555544333 3466665
No 17
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.3e-07 Score=94.63 Aligned_cols=241 Identities=11% Similarity=0.132 Sum_probs=165.0
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|.|+|++.+.. .| ++++.++..+-..|.+.++++.+.+...+. +.=.++-..++.+ .|++|+|+. .|.+-+
T Consensus 540 ~mfea~l~~~~--~l-k~ii~ai~~iv~~~~~~~~~~Gi~~~a~D~-s~valv~~~L~~~-~F~~y~cd~----~i~iG~ 610 (798)
T 3k4x_A 540 GALEAKFEEAS--LF-KRIIDGFKDCVQLVNFQCKEDGIIAQAVDD-SRVLLVSLEIGVE-AFQEYRCDH----PVTLGM 610 (798)
T ss_dssp --CEEEESSHH--HH-HHHHHTTTTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GEEEEECSS----CEEEEE
T ss_pred ceEEEEcCchH--HH-HHHHHHHHHHhCcEEEEEECCeEEEEEECC-CcEEEEEEEeccc-cCceEEcCC----CeEEEE
Confidence 56999999866 55 899999999999999999999999998764 3556777777766 999999973 277799
Q ss_pred eccccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHhhhhhhhhccCCCCCeE
Q 038838 81 DISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTL 156 (284)
Q Consensus 81 ~~~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~~p~~~ 156 (284)
++..|. .+.+.+.++|+....+ -.|.|.+++.....+.+.=++ ++...+ +++..|- ...+..
T Consensus 611 nL~~L~kiLk~~~~~d~v~l~~~d~~--------~~l~~~~e~~~~~~~~~f~lk-L~d~~~-~~~~iP~----~e~~~~ 676 (798)
T 3k4x_A 611 DLTSLSKILRCGNNTDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSLK-LMDIDA-DFLKIEE----LQYDST 676 (798)
T ss_dssp EHHHHHHHHHHSCSSSEEEEECCSSC--------SEEEEEEECSSCCCEEEEEEE-CCCCCC-CCCCCCC----CCCSEE
T ss_pred EHHHHHHHHhccCCCCEEEEEEcCCC--------CeEEEEEecCCCceEEEEEEE-eecCCC-CCCCCCC----ccceEE
Confidence 999988 3556788999886443 236676664433344555553 565554 2333331 112347
Q ss_pred EecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 157 VQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 157 i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
+.||+ ..|+.+++++..+|+.|+|+++.+ .++|..++|..++...++.-.. ...+++.. ...-+
T Consensus 677 i~m~s-~~f~~~~~~l~~~sd~v~i~~~~~-~v~~s~~gd~G~~~~~l~~~~~------~~~~~~~~--------~i~~~ 740 (798)
T 3k4x_A 677 LSLPS-SEFSKIVRDLSQLSDSINIMITKE-TIKFVADGDIGSGSVIIKPFVD------MEHPETSI--------KLEMD 740 (798)
T ss_dssp EEEEH-HHHHHHHHHHHTTCSEEEEEEETT-EEEEEEECSSCEEEEEECCBCC------SSCGGGCB--------EEEES
T ss_pred EEEEH-HHHHHHHHHHHhcCCEEEEEEeCC-EEEEEEEcccceEEEEecCCCC------CCCccccE--------EEEcC
Confidence 77997 799999999999999999999985 7999999999999888874210 00001100 01112
Q ss_pred CeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEe
Q 038838 237 DAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFI 281 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~i 281 (284)
+.++.+...|-|..++.+-.+.. .|...+.++.-+.+ ..++||+
T Consensus 741 e~~~~~f~l~YL~~~~Ka~~ls~-~V~i~~~~~~Pl~~~y~i~~G~i~fyl 790 (798)
T 3k4x_A 741 QPVDLTFGAKYLLDIIKGSSLSD-RVGIRLSSEAPALFQFDLKSGFLQFFL 790 (798)
T ss_dssp SCEEEEEEHHHHHHHGGGGGTCS-EEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEEHHHHHHHhhhccCCC-eEEEEeCCCccEEEEEEEcceEEEEEE
Confidence 45888999999999987755433 45555555444333 2466665
No 18
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=98.72 E-value=6.9e-07 Score=79.65 Aligned_cols=215 Identities=11% Similarity=0.109 Sum_probs=134.2
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|+|++ +.+ .| ++++.+++++-..|.+.++++.+.+...+. ..-.++-..++.+ .|++|+++. .+ +-+++
T Consensus 2 f~a~~-~a~--~~-k~i~~ai~~i~~~v~~~~~~~gl~~~A~D~-~rvalv~~~l~~~-~F~~y~~~~----~v-~g~~l 70 (247)
T 3ifv_A 2 FKAIV-SAA--TL-RDALDSVSVLVDECKIRLNEESLSIRAVDP-ANVGMVDLTLDAA-AFESYEAHG----GV-IGVNL 70 (247)
T ss_dssp CCEEE-CHH--HH-HHHHHHHHTTCSSEEEC---CEEEEEEECT-TSSEEEEEEEEGG-GSSBC---------C-EEECH
T ss_pred eEEEE-cHH--HH-HHHHHHHHHHhcEEEEEEeCCeEEEEEECC-ccEEEEEEEEchh-cCeEEEccC----cE-EEEEH
Confidence 89998 544 54 899999999999999999999999998653 3667888888877 899999863 35 88888
Q ss_pred cccc---C-cCCCceeEEEEeecCCCCCCCCcceEEEEEecceeEEEEeccCCcccCHHHHh-hhhhhhhccCCCCCeEE
Q 038838 83 SLLQ---P-GSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVL-ELQTALDMAQDLPPTLV 157 (284)
Q Consensus 83 ~~L~---s-a~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~~~~v~hdIPV~kvl~~~~~~-~~~eP~~~~~~~p~~~i 157 (284)
..|. + +.+.+.++|++...+ ..|.|.+.+. +.=++ ++-...-+ +..-|- ...+..+
T Consensus 71 ~~l~kiL~~~~~~d~v~i~~~~~~--------~~l~~~~~~~------~~~~r-Lid~~~~~~~~~iP~----~e~~~~v 131 (247)
T 3ifv_A 71 SRLEEVAGMAGAGDLIHLTLDEET--------RKLNIRIDGL------SYTLA-LIDPDSIRQEPDIPD----LDLAANI 131 (247)
T ss_dssp HHHHHHHTTC----CEEECC---------------EEEETTE------EEEC----CTTC----CCCCC----CCCSEEE
T ss_pred HHHHHHHhcCCCCCEEEEEEcCCC--------CEEEEEEeCc------EEEEE-eecccccccCCCCCC----CCceEEE
Confidence 8888 3 334566888876543 3567777653 33443 45444321 122220 1122367
Q ss_pred ecCChhhHhHHHHhhhhcCCEEEEEEEc-CCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 158 QVPDLNQLQNFVDWMKHVGDLVNVSICK-YRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 158 ~LP~l~~l~~ivdR~k~ls~~v~i~an~-~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
.||+ ..|+.+++|+..+|+.|+|+++. .+.+++..+.|..++...+.. +... + .. +
T Consensus 132 ~~~s-~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~--------~~~~-~------------~~-~ 188 (247)
T 3ifv_A 132 VLEG-THLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPP--------ADLI-S------------IE-A 188 (247)
T ss_dssp EEEH-HHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEECSSCEEEEEECG--------GGCS-E------------EE-E
T ss_pred EEEH-HHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEecceEEEEEECC--------CceE-E------------Ee-c
Confidence 7886 78999999999999999999995 468899888887777777752 0000 0 00 1
Q ss_pred CeEEEEEechhhhhhcccccccccEEEEEeecCce
Q 038838 237 DAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVA 271 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~ 271 (284)
+.++...+.|-|..++..-.+ -..|...+.++.-
T Consensus 189 e~~~~~F~~~YL~~~~Ka~~~-s~~V~i~~~~~~P 222 (247)
T 3ifv_A 189 GAADSLFSLDYLKDMNKAIPT-DAEVTVELGEEFP 222 (247)
T ss_dssp CCCEEEEEHHHHHHHHHHSCT-TCEEEEEECBSSC
T ss_pred CeEEEEEeHHHHHHhhhhccC-CCEEEEEecCCcc
Confidence 347778888888888865433 2355555554443
No 19
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=98.65 E-value=7.8e-07 Score=80.19 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=150.7
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI 80 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~ 80 (284)
|||+..-.+.. .| ++++.++++++..|.+..+++.+.+-.-+. +...-+-..++.+ +|++|+++......+.+-+
T Consensus 1 M~~~i~~~~~~--~~-~k~i~als~l~~e~~~~~~~~gl~l~a~d~-S~va~v~l~~~~~-fF~~Y~~~~~~~~~~~~gv 75 (266)
T 3a1j_A 1 MKCLVTGGNVK--VL-GKAVHSLSRIGDELYLEPLEDGLSLRTVNS-SRSAYACFLFAPL-FFQQYQAATPGQDLLRCKI 75 (266)
T ss_dssp CEEEEETHHHH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSCEEEEEEECGG-GSSEEECCCSSSCCCCEEE
T ss_pred CEeEEcchhHH--HH-HHHHHHHHhhCCcEEEEEccCcEEEEEEcC-cccEEEEEEEchH-hhhheecCCCCCCcEEEEE
Confidence 88888876544 54 899999999999999999999999997442 3556666777765 9999999854445678999
Q ss_pred eccccc---CcCCC-----ceeEEEEeecCCCCCCCCcceEEEEEec-ceeEEEEeccCCcccCHHHHhhhhhhhhccCC
Q 038838 81 DISLLQ---PGSAA-----NCLQIKLVKKLPPNCTQAMPFLTFETKG-YKSAVIQDVPISKPLSRAQVLELQTALDMAQD 151 (284)
Q Consensus 81 ~~~~L~---sa~~a-----~~~~ikL~kk~~~~~~~~~P~Ls~~~~g-~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~ 151 (284)
+..+|. +..+. +.+.|++.... .-|.+.+.+ ..+.-+|.+|.- -.... +...|.. .
T Consensus 76 ~~k~l~kilk~~~~~d~~vd~~~i~~~~~~--------~~l~~~~~~~~~~~k~~~l~l~-d~~~~---~~~~~~~---~ 140 (266)
T 3a1j_A 76 LMKSFLSVFRSLAMLEKTVEKCCISLNGRS--------SRLVVQLHCKFGVRKTHNLSFQ-DCESL---QAVFDPA---S 140 (266)
T ss_dssp EHHHHHHHHCCHHHHHHHEEEEEEECCTTC--------SEEEEEEEEGGGCEEEEEEECE-ECCCC---CCCCCGG---G
T ss_pred EhhHHHHHhCCcccccccceEEEEEEcCCC--------ceEEEEEEccCCceEEEEEEEE-ccccc---cceechh---h
Confidence 999888 33222 57888885332 346666542 235567777764 33221 1222211 1
Q ss_pred CCCeEEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeecc------EEEeEEEccCcccccccCCCCccccccc
Q 038838 152 LPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTL------ITLGAEFRKLLVIGEKAVAPSEDRNLSA 225 (284)
Q Consensus 152 ~p~~~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~------v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 225 (284)
-...+.+|+ +.|+.+++-+...++.|+|.++..+.+.+...++. ..+.++..- + +.+-.
T Consensus 141 -~~~~i~~~s-~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~--------~-~~e~~---- 205 (266)
T 3a1j_A 141 -CPHMLRAPA-RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCL--------G-EEDFQ---- 205 (266)
T ss_dssp -CSEEEEEEH-HHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEE--------C-GGGCS----
T ss_pred -CCceEEECh-HHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEE--------C-HHHhh----
Confidence 122566775 68999999999999999999994445666663322 122222110 0 00000
Q ss_pred cchhhhhcCCCCeEEEEEechhhhhhcccccccccEEEEEe-ecCceEEE------EEEEEEe
Q 038838 226 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGI-APQVACLT------VIFQFFI 281 (284)
Q Consensus 226 ~~r~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I-~~~~~~~~------~~l~y~i 281 (284)
.-.-++.++++...|.|..++.-....+..+-++. .+++=+.+ +.++|++
T Consensus 206 ------~~~~~~~~~~tFslkyl~~~l~f~~~~~~~v~i~~~~~g~Pl~~~~~~~~~~~~f~L 262 (266)
T 3a1j_A 206 ------QLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVL 262 (266)
T ss_dssp ------EEECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEEECSTTSCEEEEEECSSEEEEEEE
T ss_pred ------heecCCCCEEEEEHHHHHHHHHHHHhcCCcEEEEECCCCccEEEEEeCCcEEEEEEE
Confidence 00112357899999999997766433344455555 34555554 3455554
No 20
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=97.38 E-value=0.0026 Score=58.17 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=134.0
Q ss_pred CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEe-ccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEE
Q 038838 1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLP-NLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFA 79 (284)
Q Consensus 1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~-~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le 79 (284)
|||...-.+.. .+ .+.+++++|++...++-.+++.|.+-. ++. ...-+-..++. .+|++|.+.......+.+.
T Consensus 1 M~~~i~g~~~K--~f-~kai~~LskigdEl~~e~~~dgL~LravNsS--rSA~~~~~f~~-~FF~~Y~~~~~~~~~~~c~ 74 (296)
T 3g65_A 1 MKCLVTGGNVK--VL-GKAVHSLSRIGDELYLEPLEDGLSLRTVNSS--RSAYACFLFAP-LFFQQYQAATPGQDLLRCK 74 (296)
T ss_dssp CEEEEETHHHH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECTT--SCEEEEEEETT-SSCCCCCC-------CCEE
T ss_pred CEEEEecccHH--HH-HHHHHHHHhhCceEEEEEcCCeEEEEEECCc--ceEEEEEEeCh-HHhhheecCCCCCccEEEE
Confidence 66666555443 54 899999999999999999999999986 433 44455555565 5999999985444678888
Q ss_pred Eeccccc---CcC-----CCceeEEEEeecCCCCCCCCcceEEEEEec-ceeEEEEeccCCcccCHHHHhhhhhhhhccC
Q 038838 80 IDISLLQ---PGS-----AANCLQIKLVKKLPPNCTQAMPFLTFETKG-YKSAVIQDVPISKPLSRAQVLELQTALDMAQ 150 (284)
Q Consensus 80 ~~~~~L~---sa~-----~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g-~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~ 150 (284)
++..+|+ +.. +-..++|.|... ..-|.+.+.. ....=+|.+|.. ....-+. .+ |..
T Consensus 75 i~~K~ll~vfr~~~~~d~~ve~c~i~l~~~--------~~rl~i~l~ck~gi~Kt~~l~~~-~~~~l~a-~~--~~~--- 139 (296)
T 3g65_A 75 ILMKSFLSVFRSLAMLEKTVEKCCISLNGR--------SSRLVVQLHCKFGVRKTHNLSFQ-DCESLQA-VF--DPA--- 139 (296)
T ss_dssp EEHHHHHTTTSSTTC----CCEEEEEECCC-----------EEEEEECGGGCEEEEEECCC-CCCCCCC-CC--CGG---
T ss_pred EEhHHHHHHhccccccccceeEEEEEEeCC--------CCEEEEEEEeCCCeEEEEEEEeE-ecccccc-cc--Cch---
Confidence 9887777 222 234577887533 2457777752 234667888874 3322111 11 111
Q ss_pred CCCCeEEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccchhh
Q 038838 151 DLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSE 230 (284)
Q Consensus 151 ~~p~~~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~ 230 (284)
..|. .+.+++ +.|+.+++-+....+.|++.++.++.+.|+--++... .++. ++...+-..++.+ ..
T Consensus 140 ~~~n-~~~i~~-~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~-----d~~~------~~~~Tel~i~~~e-f~ 205 (296)
T 3g65_A 140 SCPH-MLRAPA-RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEA-----DSTA------KAMVTEMCLGEED-FQ 205 (296)
T ss_dssp GCSC-EEEEEH-HHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC----------CC------CCCEEEEEECGGG-CS
T ss_pred hCcE-EEEEch-HHHHHHHHhCcCCcceEEEEECCCCeEEEEEeccccc-----cccC------ceEEEEEEEChhH-he
Confidence 2233 333332 5778888888877899999999777777766544221 0010 0000000000000 00
Q ss_pred hhcCCCCeEEEEEechhhhhhcccccccccEEEEEee-cCceEEE
Q 038838 231 RAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIA-PQVACLT 274 (284)
Q Consensus 231 ~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~-~~~~~~~ 274 (284)
+ -.-++.+.+++.+|.|..+++-....-..+-++.. +++=+.+
T Consensus 206 ~-~~v~~~~~itf~lKefrail~~ae~~~~~i~i~f~~pG~Pl~~ 249 (296)
T 3g65_A 206 Q-LQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIF 249 (296)
T ss_dssp E-EECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEECCSTTSCEEE
T ss_pred e-EecCCCcEEEEEHHHHHHHHHHHHhcCCeEEEEECCCCCcEEE
Confidence 0 01123478999999999998775432334444444 4555444
No 21
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=67.79 E-value=28 Score=30.22 Aligned_cols=99 Identities=11% Similarity=0.137 Sum_probs=63.7
Q ss_pred eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838 3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI 82 (284)
Q Consensus 3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~ 82 (284)
|-+++.=.+ ..|++++.-++.++..+.+..+++.+.|...++ +...-..++.+.=.-++.+ ...+...+.+
T Consensus 132 ~~~~v~m~s--~~f~~~~~dl~~~sd~v~i~~~~~~~~f~~~gd---~~~~~~~~~~~~~l~~~~~----~~~~~~~fsl 202 (249)
T 3fds_C 132 LAVNFTTDE--SVLNVIAADVTLVGEEMRISTEEDKIKIEAGEE---GKRYVAFLMKDKPLKELSI----DTSASSSYSA 202 (249)
T ss_dssp CCEEEEECH--HHHHHHHHHHHHHCSEEEEEEETTEEEEEEEET---TEEEEEEEEETBEESEEEE----SSCCEEEEEH
T ss_pred ceEEEEEEH--HHHHHHHHHHHHhCCEEEEEEECCEEEEEEEec---CcEEEEEEcCCCCcEEEEc----CCceEEEEEH
Confidence 344444333 455899999999999999999999999987554 3334444443320111211 2345666777
Q ss_pred cccc---C-cCC-CceeEEEEeecCCCCCCCCcce-EEEEEe
Q 038838 83 SLLQ---P-GSA-ANCLQIKLVKKLPPNCTQAMPF-LTFETK 118 (284)
Q Consensus 83 ~~L~---s-a~~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~ 118 (284)
+.|. . +.. ++.++|+|.... |+ |.+.+.
T Consensus 203 ~yL~~~~K~a~~ls~~V~i~~~~~~--------Pl~l~y~i~ 236 (249)
T 3fds_C 203 EMFKDAVKGLRGFSAPTMVSFGENL--------PMKIDVEAV 236 (249)
T ss_dssp HHHHHHHHTTTTCCSCEEEEECTTC--------CEEEEEECT
T ss_pred HHHHHHHhhhcccCCEEEEEecCCc--------CEEEEEEeC
Confidence 7777 4 443 788999997765 64 566654
No 22
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=62.48 E-value=73 Score=27.41 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=61.4
Q ss_pred hHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCC-CcCceEeeecCC-CeEEEEEeccccc---Cc
Q 038838 14 LLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKET-LFGDYRISSQIE-DCIAFAIDISLLQ---PG 88 (284)
Q Consensus 14 ~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~-~F~~y~i~S~~~-N~I~le~~~~~L~---sa 88 (284)
..|.+++.-++-++..+.|.++++.+.|...++ ...+--+++.+. -. ..++. + ..+...++.+.|. .+
T Consensus 139 ~~f~~~i~~~~~~sd~V~i~~~~~~v~~ss~gd---~G~~~~~l~~~~~~~--~~~~~--~~e~~~~~F~~~YL~~~~Ka 211 (259)
T 3lx2_A 139 GALKRAVKAAKLVSDSIYFMATPEKLTFKAEGN---DSEVRTVLTMEDPGL--LDLEH--KMTKAKSAYGVAYLEDILRS 211 (259)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECSSCEEEEEECS---SCEEEEEECTTSTTE--EEEEE--SSSCEEEEEEHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCEEEEEEEec---CcEEEEEEcCCCCce--EEEEe--cCceEEEEEEHHHHHhhhcc
Confidence 344799999999999999999999999988653 334555555431 11 12221 2 3577777888888 45
Q ss_pred C-CCceeEEEEeecCCCCCCCCcc-eEEEEEe
Q 038838 89 S-AANCLQIKLVKKLPPNCTQAMP-FLTFETK 118 (284)
Q Consensus 89 ~-~a~~~~ikL~kk~~~~~~~~~P-~Ls~~~~ 118 (284)
. .++.++|++.... | .|.+.+.
T Consensus 212 ~~~s~~V~l~~~~~~--------Pl~l~~~i~ 235 (259)
T 3lx2_A 212 LADADEVIIRFGFDI--------PLLLKYMVR 235 (259)
T ss_dssp SCTTSEEEEEECTTS--------CEEEEEEET
T ss_pred ccCCCeEEEEeCCCC--------CEEEEEEeC
Confidence 4 4778999998554 6 4667775
No 23
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=59.26 E-value=45 Score=28.48 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=61.6
Q ss_pred hHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCC-CcCceEeeecCCCeEEEEEeccccc---CcC
Q 038838 14 LLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKET-LFGDYRISSQIEDCIAFAIDISLLQ---PGS 89 (284)
Q Consensus 14 ~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~-~F~~y~i~S~~~N~I~le~~~~~L~---sa~ 89 (284)
..|.+.+.-++-++..+.+.++++++.|...++ ...+--+++.+. .. ..++ +..+...++.+.|. .+.
T Consensus 138 ~~f~~~i~~~~~~s~~V~i~~~~~~l~~s~~gd---~g~~~~~l~~~~~~~--~~~~---~e~~~~~F~~~YL~~~~ka~ 209 (245)
T 3fds_D 138 ITFADIIDELSDLGEVLNIHSKENKLYFEVIGD---LSTAKVELSTDNGTL--LEAS---GADVSSSYGMEYVANTTKMR 209 (245)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEETTEEEEEEECS---SCEEEEEECTTSSSC--SEEE---ECCCEEEEEHHHHHHGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEec---CcEEEEEEcCCCCce--EEEe---cceEEEEEEHHHHHHHhhhc
Confidence 344799999999999999999999999888653 334556666532 11 2233 44577778888888 444
Q ss_pred C-CceeEEEEeecCCCCCCCCcce-EEEEEe
Q 038838 90 A-ANCLQIKLVKKLPPNCTQAMPF-LTFETK 118 (284)
Q Consensus 90 ~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~ 118 (284)
. ++.++|++.... |+ |.+.+.
T Consensus 210 ~~s~~V~i~~~~~~--------Pl~l~~~i~ 232 (245)
T 3fds_D 210 RASDSMELYFGSQI--------PLKLRFKLP 232 (245)
T ss_dssp GTCSEEEEEECTTS--------CEEEEEECS
T ss_pred ccCCEEEEEecCCc--------cEEEEEEeC
Confidence 4 788999999553 64 555554
No 24
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=57.68 E-value=72 Score=27.23 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=61.7
Q ss_pred hHHHhHHHHHHhcCCeEEEEEe--CCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEeccccc---Cc
Q 038838 14 LLEKRFLPVLDKMGKVCHLFLT--REKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQ---PG 88 (284)
Q Consensus 14 ~lf~~~~~~i~kl~K~cvlrlt--~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~~~L~---sa 88 (284)
..|.+++.-++-++..+.+.++ ++.+.|...++ ...+--+++.+.+ ..++ +..+...++.+.|. .+
T Consensus 136 ~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~gd---~g~~~~~l~~~~~---~~~~---~e~~~~~F~~~YL~~~~Ka 206 (247)
T 3ifv_A 136 THLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGD---TDDVDLSLPPADL---ISIE---AGAADSLFSLDYLKDMNKA 206 (247)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEECS---SCEEEEEECGGGC---SEEE---ECCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEec---ceEEEEEECCCce---EEEe---cCeEEEEEeHHHHHHhhhh
Confidence 3447999999999999999999 66888877653 2345556665421 2233 35577788888888 45
Q ss_pred CC-CceeEEEEeecCCCCCCCCcce-EEEEEe
Q 038838 89 SA-ANCLQIKLVKKLPPNCTQAMPF-LTFETK 118 (284)
Q Consensus 89 ~~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~ 118 (284)
.. ++.++|++.... |+ |.+.+.
T Consensus 207 ~~~s~~V~i~~~~~~--------Pl~l~~~i~ 230 (247)
T 3ifv_A 207 IPTDAEVTVELGEEF--------PVKLHYQIA 230 (247)
T ss_dssp SCTTCEEEEEECBSS--------CEEEEEEEG
T ss_pred ccCCCEEEEEecCCc--------cEEEEEEEc
Confidence 44 789999999664 75 667775
No 25
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=55.95 E-value=61 Score=28.10 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=56.0
Q ss_pred ChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEE-e-eccEEEeEEEcc--CcccccccCCCCccccccccchhhhhcCCC
Q 038838 161 DLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQI-S-TTLITLGAEFRK--LLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 161 ~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v-~-t~~v~v~t~~~~--L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
..+.|+.+++=++++++.+.+.++.+| |+|+. + +..+-+...|+. ...... + + +..
T Consensus 9 ~~~~~~k~i~als~l~~e~~~~~~~~g-l~l~a~d~S~va~v~l~~~~~fF~~Y~~-------~-------~-----~~~ 68 (266)
T 3a1j_A 9 NVKVLGKAVHSLSRIGDELYLEPLEDG-LSLRTVNSSRSAYACFLFAPLFFQQYQA-------A-------T-----PGQ 68 (266)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEETTE-EEEEEECTTSCEEEEEEECGGGSSEEEC-------C-------C-----SSS
T ss_pred hHHHHHHHHHHHHhhCCcEEEEEccCc-EEEEEEcCcccEEEEEEEchHhhhheec-------C-------C-----CCC
Confidence 678899999999999999999999876 77766 3 333444455552 111100 0 0 001
Q ss_pred CeEEEEEechhhhhhccccccc---ccEEEEEee
Q 038838 237 DAQSVQVSVKHFSKSLQCHLAK---LDCAFYGIA 267 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~~---p~~~~c~I~ 267 (284)
+..++.|++|.+.++|.+..-. -..+...+.
T Consensus 69 ~~~~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~ 102 (266)
T 3a1j_A 69 DLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLN 102 (266)
T ss_dssp CCCCEEEEHHHHHHHHCCHHHHHHHEEEEEEECC
T ss_pred CcEEEEEEhhHHHHHhCCcccccccceEEEEEEc
Confidence 2467899999999999884321 134545553
No 26
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=53.59 E-value=92 Score=26.92 Aligned_cols=89 Identities=7% Similarity=0.060 Sum_probs=60.8
Q ss_pred hHHHhHHHHHHhcC-CeEEEEEeCCEEEEEeccCCCCceEEEEEEccC----CCcCceEeeecCCCeEEEEEeccccc--
Q 038838 14 LLEKRFLPVLDKMG-KVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE----TLFGDYRISSQIEDCIAFAIDISLLQ-- 86 (284)
Q Consensus 14 ~lf~~~~~~i~kl~-K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~----~~F~~y~i~S~~~N~I~le~~~~~L~-- 86 (284)
..|.+++.-++-++ ..+.|..+++.+.|...++ ...+-.+++.. .-..++.+ ++.+...++.+.|.
T Consensus 146 ~~f~~~i~~~~~~s~d~V~i~~~~~~v~~ss~gd---~G~~~~~l~~~~~~~~~~~~~~~----~e~~~~~F~~~YL~~~ 218 (265)
T 3p91_A 146 AEFLKITKDFSALGDDSITIGCTKNEVTLTTKGA---MCETCMTLSALENVDSNGLQIEH----NKDVTASFALKQISEF 218 (265)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECSSEEEEEEECS---SCEEEEEEEC-------CCEEEE----SSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECCEEEEEEEec---CceEEEEEecCCCCCCceEEEEc----CCcEEEEEEHHHHHHh
Confidence 34479999999999 8888999999998888653 33445555432 11222222 24477788888888
Q ss_pred -CcCC-CceeEEEEeecCCCCCCCCcce-EEEEE
Q 038838 87 -PGSA-ANCLQIKLVKKLPPNCTQAMPF-LTFET 117 (284)
Q Consensus 87 -sa~~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~ 117 (284)
.+.. ++.++|++.... |+ |.|.+
T Consensus 219 ~Ka~~ls~~V~i~~~~~~--------Pl~l~~~i 244 (265)
T 3p91_A 219 AKSAPLADNVKLSLSGQA--------PLIMEFKG 244 (265)
T ss_dssp GGGGGGCSEEEEEECSSS--------CEEEEEEE
T ss_pred hcccccCCEEEEEeCCCc--------cEEEEEEE
Confidence 4555 789999999764 75 67777
No 27
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=50.46 E-value=96 Score=27.59 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=59.1
Q ss_pred cCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEE-e-eccEEEeEEEccCcccccccCCCCccccccccchhhhhcCCC
Q 038838 159 VPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQI-S-TTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRG 236 (284)
Q Consensus 159 LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v-~-t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (284)
=+.+|.+...+.=+.++|+.+.+.++.+| |.|+. + +-.+-....|...-- .. -.. +.. ..
T Consensus 7 g~~~K~f~kai~~LskigdEl~~e~~~dg-L~LravNsSrSA~~~~~f~~~FF--~~-Y~~--~~~------------~~ 68 (296)
T 3g65_A 7 GGNVKVLGKAVHSLSRIGDELYLEPLEDG-LSLRTVNSSRSAYACFLFAPLFF--QQ-YQA--ATP------------GQ 68 (296)
T ss_dssp THHHHHHHHHHHHHHTTCSEEEEEEETTE-EEEEEECTTSCEEEEEEETTSSC--CC-CCC-------------------
T ss_pred cccHHHHHHHHHHHHhhCceEEEEEcCCe-EEEEEECCcceEEEEEEeChHHh--hh-eec--CCC------------CC
Confidence 34678888999999999999999998887 77766 2 345666666664211 00 000 000 01
Q ss_pred CeEEEEEechhhhhhcccccc---cccEEEEEeecCc
Q 038838 237 DAQSVQVSVKHFSKSLQCHLA---KLDCAFYGIAPQV 270 (284)
Q Consensus 237 ~~~~V~Vd~k~l~~~L~~~~~---~p~~~~c~I~~~~ 270 (284)
+...+.|.+|.+.++|..... +-.+|-..|..++
T Consensus 69 ~~~~c~i~~K~ll~vfr~~~~~d~~ve~c~i~l~~~~ 105 (296)
T 3g65_A 69 DLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRS 105 (296)
T ss_dssp --CCEEEEHHHHHTTTSSTTC----CCEEEEEECCC-
T ss_pred ccEEEEEEhHHHHHHhccccccccceeEEEEEEeCCC
Confidence 357889999999999988532 3445666665443
No 28
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=49.28 E-value=64 Score=27.88 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=64.1
Q ss_pred HHhHHHHHHhcCCeEEEEEeCC--EEEEEeccCCCCceEEEEEEccC-CCcCceEeeecCCCeEEEEEeccccc---CcC
Q 038838 16 EKRFLPVLDKMGKVCHLFLTRE--KAYFLPNLLSGEGIQCVAQFHKE-TLFGDYRISSQIEDCIAFAIDISLLQ---PGS 89 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~--~l~~i~~~~~~~g~qvW~~l~~~-~~F~~y~i~S~~~N~I~le~~~~~L~---sa~ 89 (284)
|++++.-++..+..+.+..+++ .+.|...++ ......+++.+ ..+.+|.++ ..+......+.|. .|.
T Consensus 151 l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd---~g~~~i~~~~~~~~~~~~~~~----~~~~~~y~l~yL~~~~ka~ 223 (263)
T 3a1j_C 151 LREAFSELDMTSEVLQITMSPDKPYFRLSTFGN---AGSSHLDYPKDSDLMEAFHCN----QTQVNRYKISLLKPSTKAL 223 (263)
T ss_dssp GHHHHHTSCTTSSEEEEEECSSSSSEEEEEEET---TEEEEEEECTTCSSEEEEEEC----SCEEEEEEHHHHTTHHHHH
T ss_pred HHHHHHHHhccCCeEEEEEEcCCCEEEEEEEcC---CccEEEEEcCCCCeEEEEEeC----ChhhcEEeHHHHHHHHhhh
Confidence 4899999999999999999999 999888653 34567777764 355556553 3466777777777 222
Q ss_pred -CCceeEEEEeecCCCCCCCCcce-EEEEEec
Q 038838 90 -AANCLQIKLVKKLPPNCTQAMPF-LTFETKG 119 (284)
Q Consensus 90 -~a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~g 119 (284)
.|+.++|++...+ |. |.+.+.+
T Consensus 224 ~~s~~v~i~~~~~~--------pL~l~~~i~~ 247 (263)
T 3a1j_C 224 VLSCKVSIRTDNRG--------FLSLQYMIRN 247 (263)
T ss_dssp HHCSEEEEEEETTC--------CEEEEEEEEC
T ss_pred hhcCEEEEEECCCe--------eEEEEEEEec
Confidence 3788999998776 53 5566653
No 29
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=42.22 E-value=1.6e+02 Score=24.92 Aligned_cols=88 Identities=9% Similarity=0.148 Sum_probs=61.4
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEcc------CCCcCceEeeecCCCeEEEEEeccccc---
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHK------ETLFGDYRISSQIEDCIAFAIDISLLQ--- 86 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~------~~~F~~y~i~S~~~N~I~le~~~~~L~--- 86 (284)
|.+.+.-++.++..+.+.++++.+.|-..+ +...+--+++. ..-+.+|.+ ++.+...++...|.
T Consensus 144 l~~ai~r~~~~s~~v~i~~~~~~l~ls~~~---d~g~~~~~~~~~~~~~~~~~~~~~~~----~e~~~i~f~~~yL~~~l 216 (261)
T 1u7b_A 144 FARICRDLSHIGDAVVISCAKDGVKFSASG---ELGNGNIKLSQTSNVDKEEEAVTIEM----NEPVQLTFALRYLNFFT 216 (261)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEE---TTEEEEEEECCCC----CCSCCEEEE----SSCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEe---cCceEEEEEecCCCCCCCccceEEec----CCcEEEEEeHHHHHHHh
Confidence 479999999999999999999999888864 33455556653 122333433 24577888888888
Q ss_pred CcCC-CceeEEEEeecCCCCCCCCcce-EEEEEe
Q 038838 87 PGSA-ANCLQIKLVKKLPPNCTQAMPF-LTFETK 118 (284)
Q Consensus 87 sa~~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~ 118 (284)
.+.. ++.++|++.. +. |+ |.+.+.
T Consensus 217 ka~~~s~~V~i~~~~-~~-------P~~l~~~~~ 242 (261)
T 1u7b_A 217 KATPLSSTVTLSMSA-DV-------PLVVEYKIA 242 (261)
T ss_dssp GGGGGCSEEEEEECT-TS-------CEEEEEEET
T ss_pred CcccCCCeEEEEECC-CC-------CEEEEEEeC
Confidence 5555 8889999996 33 65 556553
No 30
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=31.76 E-value=2.3e+02 Score=23.70 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccC-CCcCceEeeecCCCeEEEEEeccccc---CcCC-
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE-TLFGDYRISSQIEDCIAFAIDISLLQ---PGSA- 90 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~-~~F~~y~i~S~~~N~I~le~~~~~L~---sa~~- 90 (284)
|.+.+.-++-++..+.|.++++.+.|..+++ .| . ++...+ ...-+|.. ++ +...++...|. .+..
T Consensus 138 l~~av~r~~~ls~~V~l~~~~~~l~ls~~~d--~g-~--~~~~~~~e~~~~~~g----~~-~~i~Fn~~yL~d~lk~~~~ 207 (245)
T 1rwz_A 138 FKKAIAAADKISDQVIFRSDKEGFRIEAKGD--VD-S--IVFHMTETELIEFNG----GE-ARSMFSVDYLKEFCKVAGS 207 (245)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEECS--SC-E--EEEEECGGGSSEECC----CC-EEEEEEHHHHHHHGGGCCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEcc--Cc-E--EEEecCCCccEEEEE----ee-EEEEEeHHHHHHHhhhccC
Confidence 3788888888999999999999999887553 22 2 333221 22223322 23 88888998888 5556
Q ss_pred CceeEEEEeec
Q 038838 91 ANCLQIKLVKK 101 (284)
Q Consensus 91 a~~~~ikL~kk 101 (284)
++.++|+++..
T Consensus 208 s~~V~l~~~~~ 218 (245)
T 1rwz_A 208 GDLLTIHLGTN 218 (245)
T ss_dssp TCEEEEEECSS
T ss_pred CCeEEEEECCC
Confidence 88899999953
No 31
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=25.52 E-value=2.8e+02 Score=23.06 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=53.4
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEeccccc---CcCC-C
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQ---PGSA-A 91 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~~~L~---sa~~-a 91 (284)
|.+.+.-++-++..+.|.++++.+.|...++ ...+--+++.+.=+-+|.+ ++.+...++...|. .+.. +
T Consensus 143 l~~av~r~~~~s~~V~i~~~~~~l~ls~~~d---~g~~~~~~~~~~~~~~~~~----ge~~~i~fn~~yL~d~lk~~~~s 215 (248)
T 3aiz_A 143 LKDIARDLSLVGEEVEISADENTVTLSTEEA---GRTYKSLLKQDKPLKSLNV----ESPSKAVYSIEVLKDVFKVTSIS 215 (248)
T ss_dssp HHHHHHHHTTSCSEEEEEECSSEEEEEEEET---TEEEEEEEEETBEESEEEE----SSCEEEEEEHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEEEcc---CceEEEEEcCCCcceEEec----CCceEEEEEHHHHHHHhhhccCC
Confidence 3788888888888999999999998887643 3344444432210112332 34577888888888 4555 7
Q ss_pred ceeEEEEee
Q 038838 92 NCLQIKLVK 100 (284)
Q Consensus 92 ~~~~ikL~k 100 (284)
+.++|++..
T Consensus 216 ~~V~l~~~~ 224 (248)
T 3aiz_A 216 QNVTVGFGN 224 (248)
T ss_dssp SSEEEEEET
T ss_pred CeEEEEEcC
Confidence 889999995
No 32
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=24.49 E-value=3.1e+02 Score=22.94 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=54.2
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEcc------CCCcCceEeeecCCCeEEEEEeccccc---
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHK------ETLFGDYRISSQIEDCIAFAIDISLLQ--- 86 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~------~~~F~~y~i~S~~~N~I~le~~~~~L~--- 86 (284)
|.+++.-++.++..+.+.++++.+.|-..++ ...+--+++. ..-+-+|.+ ++.+...++...|.
T Consensus 144 l~~av~r~~~~s~~v~i~~~~~~l~ls~~~d---~g~~~~~l~~~~~~~~~~~~~~~~~----ge~~~i~f~~~yL~~~l 216 (258)
T 1plq_A 144 FSKIVRDLSQLSDSINIMITKETIKFVADGD---IGSGSVIIKPFVDMEHPETSIKLEM----DQPVDLTFGAKYLLDII 216 (258)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEECS---SCEEEEEECCBCCTTCGGGCBEEEE----SSCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEcc---CceEEEEEecCCCCCCCccceEEec----CCcEEEEEEHHHHHHHh
Confidence 4788988999998999999999998888653 2334444442 112222332 34577788888888
Q ss_pred CcCC-CceeEEEEeec
Q 038838 87 PGSA-ANCLQIKLVKK 101 (284)
Q Consensus 87 sa~~-a~~~~ikL~kk 101 (284)
.+.. ++.++|++...
T Consensus 217 ka~~~s~~V~i~~~~~ 232 (258)
T 1plq_A 217 KGSSLSDRVGIRLSSE 232 (258)
T ss_dssp GGGGTCSEEEEEECSS
T ss_pred ccccCCceEEEEECCC
Confidence 4555 88899999944
No 33
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=20.81 E-value=3.9e+02 Score=22.75 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=59.7
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccC------CCcCceEeeecCCCeEEEEEeccccc---
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE------TLFGDYRISSQIEDCIAFAIDISLLQ--- 86 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~------~~F~~y~i~S~~~N~I~le~~~~~L~--- 86 (284)
|.+.+.-++-++..+.|.++++.+.|-..++ ...+--+++.. .-+-+|.+ ++.+...++...|.
T Consensus 164 l~~av~r~~~~sd~V~i~~~~~~l~lsa~gd---~g~~~~~l~~~~~~~~~~~~~~~~~----ge~~~i~fn~~YL~d~l 236 (276)
T 2zvv_A 164 FSRICKDLSSIGDTVVISVTKEGVKFSTAGD---IGTANIVLRQNTTVDKPEDAIVIEM----KEPVSLSFALRYMNSFT 236 (276)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEET---TEEEEEEECCCSSCCSGGGCCEEEE----SSCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCEEEEEEEee---ccEEEEEEccCCCCCCccccEEEec----CCcEEEEEEHHHHHHHh
Confidence 4788988999999999999999998888643 33444445421 11222333 34577888888888
Q ss_pred CcCC-CceeEEEEeecCCCCCCCCcce-EEEEEe
Q 038838 87 PGSA-ANCLQIKLVKKLPPNCTQAMPF-LTFETK 118 (284)
Q Consensus 87 sa~~-a~~~~ikL~kk~~~~~~~~~P~-Ls~~~~ 118 (284)
.+.. ++.++|+|... . |+ |.+.+.
T Consensus 237 ka~~ls~~V~i~l~~~-~-------Pl~l~~~~~ 262 (276)
T 2zvv_A 237 KATPLSDTVTISLSSE-L-------PVVVEYKVA 262 (276)
T ss_dssp GGGGGCSEEEEEECTT-S-------CEEEEEEET
T ss_pred ccccCCCEEEEEEcCC-c-------eEEEEEEeC
Confidence 5555 88899999943 2 65 556553
No 34
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=20.48 E-value=3.7e+02 Score=22.27 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccC-CCcCceEeeecCCCeEEEEEeccccc---CcCC-
Q 038838 16 EKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE-TLFGDYRISSQIEDCIAFAIDISLLQ---PGSA- 90 (284)
Q Consensus 16 f~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~-~~F~~y~i~S~~~N~I~le~~~~~L~---sa~~- 90 (284)
|.+.+.-++-++..+.|.++++.+.|..+++. | . --+++.+ .-+-+|.+ +..+...++...|. .+..
T Consensus 139 l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~--g-~-~~~l~~~~~~~~~~~~----ge~~~i~Fn~~yL~d~lk~~~~ 210 (244)
T 2ijx_A 139 FKSAISEVSTVTDNVVVEGHEDRILIKAEGES--E-V-EVEFSKDTGGLQDLEF----SKESKNSYSAEYLDDVLSLTKL 210 (244)
T ss_dssp HHHHHHHHTTTCSEEEEEEETTEEEEEETTCT--T-S-EEEEETTTTCEEEEEE----SSCEEEEEEHHHHHHTGGGGGG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEecC--c-e-EEEEeCCCCccEEEEc----CCceEEEEEHHHHHHHhhhccC
Confidence 36888888888889999999999998875532 2 2 2333321 11112322 34577788888888 4555
Q ss_pred CceeEEEEee
Q 038838 91 ANCLQIKLVK 100 (284)
Q Consensus 91 a~~~~ikL~k 100 (284)
++.++|++..
T Consensus 211 s~~V~l~~~~ 220 (244)
T 2ijx_A 211 SDYVKISFGN 220 (244)
T ss_dssp CSEEEEEEET
T ss_pred CCEEEEEEcC
Confidence 7889999994
Done!