Query 038842
Match_columns 423
No_of_seqs 178 out of 334
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2569 G protein-coupled seve 100.0 5E-105 1E-109 787.9 10.9 410 1-423 25-440 (440)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 3.4E-63 7.4E-68 491.0 26.0 281 112-399 1-295 (295)
3 KOG2568 Predicted membrane pro 100.0 1.6E-51 3.5E-56 424.9 25.4 300 94-403 143-451 (518)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.6 4.5E-13 9.7E-18 130.8 20.6 246 132-387 3-256 (257)
5 KOG4290 Predicted membrane pro 97.9 0.00038 8.1E-09 70.6 16.3 151 112-265 115-276 (429)
6 KOG2569 G protein-coupled seve 97.1 0.00029 6.2E-09 71.9 3.0 81 115-195 303-393 (440)
7 COG4736 CcoQ Cbb3-type cytochr 78.9 2.8 6.2E-05 32.3 3.5 31 380-410 18-55 (60)
8 PRK11715 inner membrane protei 74.8 9.5 0.00021 40.5 7.4 108 82-197 227-340 (436)
9 PF06123 CreD: Inner membrane 69.7 19 0.00041 38.3 8.1 35 161-197 300-334 (430)
10 TIGR01294 P_lamban phospholamb 68.2 10 0.00022 27.5 4.0 32 319-352 11-44 (52)
11 PRK10921 twin-arginine protein 66.5 54 0.0012 32.3 10.2 33 232-264 75-107 (258)
12 PF04272 Phospholamban: Phosph 60.7 19 0.00042 26.1 4.2 32 319-352 11-44 (52)
13 smart00805 AGTRAP Angiotensin 58.9 87 0.0019 28.7 9.1 82 157-243 28-109 (159)
14 PF06396 AGTRAP: Angiotensin I 44.0 1.5E+02 0.0032 27.4 8.4 80 157-242 28-108 (162)
15 PF06454 DUF1084: Protein of u 43.3 3.5E+02 0.0076 27.0 16.6 95 155-253 22-120 (281)
16 PF04875 DUF645: Protein of un 42.4 31 0.00067 26.3 3.0 25 15-39 5-29 (59)
17 cd08764 Cyt_b561_CG1275_like N 38.8 2.1E+02 0.0045 27.6 8.9 67 154-220 23-91 (214)
18 PF05393 Hum_adeno_E3A: Human 38.5 33 0.00072 28.5 2.9 26 160-185 36-61 (94)
19 PF13042 DUF3902: Protein of u 36.6 3.4E+02 0.0074 24.9 9.6 44 161-205 6-49 (161)
20 PF08733 PalH: PalH/RIM21; In 35.5 5.1E+02 0.011 26.7 16.3 122 182-305 112-240 (348)
21 PF05875 Ceramidase: Ceramidas 33.8 4.3E+02 0.0092 25.6 10.5 46 163-209 31-76 (262)
22 PRK10263 DNA translocase FtsK; 30.1 3.4E+02 0.0073 33.2 10.3 27 157-183 75-101 (1355)
23 PF10856 DUF2678: Protein of u 29.8 79 0.0017 27.6 4.0 53 160-212 62-114 (118)
24 PF05545 FixQ: Cbb3-type cytoc 28.6 90 0.0019 22.5 3.6 29 381-416 19-47 (49)
25 PRK15301 hypothetical protein; 25.4 39 0.00084 31.9 1.5 23 17-39 84-106 (186)
26 PF03381 CDC50: LEM3 (ligand-e 23.8 3.4E+02 0.0074 27.0 7.9 74 104-182 192-270 (278)
27 PF13491 DUF4117: Domain of un 23.7 5.2E+02 0.011 22.9 10.1 49 159-207 60-108 (171)
28 cd08763 Cyt_b561_CYB561 Verteb 23.7 5.4E+02 0.012 23.1 9.2 70 154-225 6-82 (143)
29 PF03823 Neurokinin_B: Neuroki 22.8 42 0.00091 25.6 0.9 18 234-251 2-19 (59)
30 PF10361 DUF2434: Protein of u 22.8 1.9E+02 0.0041 29.2 5.7 92 162-263 51-154 (296)
31 cd00930 Cyt_c_Oxidase_VIII Cyt 21.6 1.1E+02 0.0024 22.1 2.8 20 303-322 20-39 (43)
32 KOG3966 p53-mediated apoptosis 21.1 1.1E+02 0.0023 30.9 3.5 33 244-277 240-275 (360)
33 PF06638 Strabismus: Strabismu 20.7 4.4E+02 0.0095 28.7 8.3 71 169-241 143-215 (505)
34 PF11460 DUF3007: Protein of u 20.5 4.4E+02 0.0096 22.6 6.7 42 260-301 3-44 (104)
35 PF03798 TRAM_LAG1_CLN8: TLC d 20.3 3E+02 0.0064 24.6 6.3 48 155-202 42-91 (198)
36 PHA02898 virion envelope prote 20.1 2.6E+02 0.0056 23.3 5.0 54 198-256 20-76 (92)
No 1
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-105 Score=787.86 Aligned_cols=410 Identities=50% Similarity=0.886 Sum_probs=393.2
Q ss_pred CeEeeecCCCCCceeeccccCCCCcEEEEEEeeeeeeccccCcCCCCCCCCCCCCCCceeEEEEEecCChhhhh--hhhc
Q 038842 1 IKETHVVDDSRPLIMFERFGFTEDGKAEVTIKDISWKSKKQNYNNGNNNNKDQVLNPSSLGFFFVRDLAFPVMI--NESQ 78 (423)
Q Consensus 1 i~~~~~~~d~r~~i~~~~FGF~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~L~~~~~~~~~~--~~~~ 78 (423)
|++.+|.+|+||.|.+|+|||.+-|+..|.++.+++.+ +.| .+|.+++||++++.+++.+++ ++++
T Consensus 25 ~~~~~i~~d~rp~~~~e~~~~~~~~~~~v~~~~~~v~s--~~p----------~~d~sr~~~f~~s~~s~~~~l~p~~~~ 92 (440)
T KOG2569|consen 25 IKSLTISDDSRPMILLEKFGQTHVGHVTVSASSVAVVS--SDP----------NLDASRLGFFLLSGESEMAVLAPLEFP 92 (440)
T ss_pred ccCcccccCcCcchhhhccceeeecceecccceEEeec--CCC----------CCchhcCCCcccCchHHHhhhhhcccc
Confidence 57889999999999999999999999999999888765 222 468899999999999999988 8889
Q ss_pred cccCcccccccceeEEEEeecccC--CCcceeeEEeCCCCceEEEEeeccCCceeEEEEEEEEEecc-C-CCCCccCccC
Q 038842 79 YIEGFCSLSSRYAKLVYRFEKIVP--NSSYSGAVNINDPDEYILLFGNCQPEFQVSMFVKTEMHNSQ-H-GIKDYLPAGQ 154 (423)
Q Consensus 79 ~~~~~C~l~~~~~~~~~~f~~~~~--~~~~~~~~~V~~~g~Y~l~f~~C~~~~~~~~~v~~~~~n~~-~-~~~~yLsa~~ 154 (423)
++...|.+++.++++.++|.+..+ .+.++..++++++|+|+++|+||.|..+.+|.|+++++|.+ + |.++|||||+
T Consensus 93 q~~~~~~~~s~~~l~~~t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~~sm~V~~~~~~~~~p~g~~dyl~ag~ 172 (440)
T KOG2569|consen 93 QSRGPCVLDSLYVLHMFTFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETKGSMVVRVEMYNLLEPNGSRDYLSAGE 172 (440)
T ss_pred cccCccccccccchhhhhhhhcCCCCCCCceEEecCCCCceEEEEEeeccccccceEEEEEEeeeccCCCCccccccccc
Confidence 999999999999999999999865 57789999999999999999999999999999999999964 2 4567999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCccchhHHHHHHHHHHH
Q 038842 155 TQLPRLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTPHGWDVAFYIFGLFK 234 (423)
Q Consensus 155 ~PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~~~w~v~~~I~~~lk 234 (423)
.+||.+|+.|+++|+.+++.|.+.|+++++.+++||.+|++++++|+++++|++.+|||++++|+++||++.+||++++|
T Consensus 173 ~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~~~gw~vl~yI~~~lk 252 (440)
T KOG2569|consen 173 TSLPRLYFDFSLLYLDFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGTVHGWAVLFYIFHFLK 252 (440)
T ss_pred ccCchhHHHHHHHHHHhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCceeeeeehhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccccccccccceeeeeehhhHHHHHHhhhheeccCCCCcchhhhhhhhHHHHHHHHhHHHHHHHH
Q 038842 235 GIMLFTVIVLIGTGWSFLKPYLQEREKNVLMTVIPLQVLENIAYVVISETGPATQDWMAWNHMFLLIDIICCAAVFFPII 314 (423)
Q Consensus 235 ~~l~f~lIlLIg~Gw~~vkp~L~~~~kkv~~ivi~LqVlania~iii~~~~~~~~~~~~w~~i~~lvd~~cc~ailfpiv 314 (423)
|+++|.++++|||||+++||.|++++||++|+++|+||++|+|.|+++|+|+++++|.+|+++|.++|+.|||||.|||+
T Consensus 253 g~llf~tivligTgwSflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIv 332 (440)
T KOG2569|consen 253 GVLLFTTIVLIGTGWSFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIV 332 (440)
T ss_pred hhhheeEEEeeccCceeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchHHHhhHhHHHHHHHHHHHHHHHHHHhhheeeeeeeecccccccHHHHHHHHHHHHHHHHHHhhccc
Q 038842 315 WSIRSLKEASKTDGKAARNLEKLTLFKQFYIVVVGYLYFTRIVVPASAHVVNYRFEWTMYAAAEGASLVFYLFIFHNFQP 394 (423)
Q Consensus 315 wsi~~L~~as~td~ka~~nl~KL~LFr~Fy~~vi~yiyft~iiv~~l~~~~~~~~~Wv~~~~~e~~~lvf~v~i~~~fRP 394 (423)
||||||||+|+|||||++|+.||++|||||++++||+|||||+++.++..++|+++|++.++.|++|++||++|||+|||
T Consensus 333 wSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~a~E~at~aFy~l~gykFRP 412 (440)
T KOG2569|consen 333 WSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFAAEEMATLAFYVLMGYKFRP 412 (440)
T ss_pred eehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHHHHHHHHHHHHhhheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeccCcchHHHHhhccccCCCCC
Q 038842 395 TEKNPYFVVDDEEESEARQILEEDDSFEL 423 (423)
Q Consensus 395 ~~~N~y~~l~d~e~~~~~~~l~~~~~~~~ 423 (423)
.+.|||+.++|||||++|++++ |++||+
T Consensus 413 ~~~~~Yf~vddeeee~~~~~l~-e~~~~~ 440 (440)
T KOG2569|consen 413 VESNEYFVVDDEEEEADELALK-EDEFEE 440 (440)
T ss_pred cccCCccccCchhhhhhhhhcc-cccccC
Confidence 9999999999999999999999 899986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.4e-63 Score=491.04 Aligned_cols=281 Identities=35% Similarity=0.669 Sum_probs=262.0
Q ss_pred eCCCCceEEEEeeccCC-----ceeEEEEEEEEEeccCCCCCccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 038842 112 INDPDEYILLFGNCQPE-----FQVSMFVKTEMHNSQHGIKDYLPAGQTQLPRLYLMFFFTYTLFFVMWVFICIKQRPIV 186 (423)
Q Consensus 112 V~~~g~Y~l~f~~C~~~-----~~~~~~v~~~~~n~~~~~~~yLsa~~~PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v 186 (423)
|+++|+|++++++|+|+ .+.+++++++++ ||+|||||+|+|+|++|++|+++|+++++.|++.|.|||+++
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~----N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~ 76 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFK----NPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSV 76 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEE----CCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 57899999999999875 356777777776 489999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhheecccCcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccceeeee
Q 038842 187 DKIHIVMAALLLVKALKMICASEDKLYVSETGTP-HGWDVAFYIFGLFKGIMLFTVIVLIGTGWSFLKPYLQEREKNVLM 265 (423)
Q Consensus 187 ~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~-~~w~v~~~I~~~lk~~l~f~lIlLIg~Gw~~vkp~L~~~~kkv~~ 265 (423)
.|||++|+++++++++|+++++.+|+++|++|++ ++|.++.++++++|++++|+++++||+|||++||+|++++||+++
T Consensus 77 ~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~ 156 (295)
T PF06814_consen 77 LPIHYLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLM 156 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhH
Confidence 9999999999999999999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHHHhhhheeccCCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhchHHHhhHhHHHHHHHHHH
Q 038842 266 TVIPLQVLENIAYVVISETGPATQDWMAWNHMFLLIDIICCAAVFFPIIWSIRSLKEASKTDGKAARNLEKLTLFKQFYI 345 (423)
Q Consensus 266 ivi~LqVlania~iii~~~~~~~~~~~~w~~i~~lvd~~cc~ailfpivwsi~~L~~as~td~ka~~nl~KL~LFr~Fy~ 345 (423)
+++++||+++++.++.++.++++.++..|..++.++|+ |+++++|++|+++||++ +.+|+|++||.+||++||+|++
T Consensus 157 l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~wi~~sL~~-t~~~lk~~~q~~KL~lyr~f~~ 233 (295)
T PF06814_consen 157 LVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPL--CILDLFFIVWIFRSLSK-TIRDLKARRQTAKLSLYRRFYN 233 (295)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888889999999999 67778999999999999 4568999999999999999999
Q ss_pred HHHHHHHHhhheeeeeee--------ecccccccHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 038842 346 VVVGYLYFTRIVVPASAH--------VVNYRFEWTMYAAAEGASLVFYLFIFHNFQPTEKNP 399 (423)
Q Consensus 346 ~vi~yiyft~iiv~~l~~--------~~~~~~~Wv~~~~~e~~~lvf~v~i~~~fRP~~~N~ 399 (423)
++++|++++++++++... ..+|+++|+.+++||++++++++++||+|||++|||
T Consensus 234 ~li~~v~~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 234 VLIAYVVFSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999999999987665432 358899999999999999999999999999999997
No 3
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.6e-51 Score=424.95 Aligned_cols=300 Identities=17% Similarity=0.240 Sum_probs=242.4
Q ss_pred EEEeecccCCCcceeeEEeCCCCceEEEEeeccCCce-eEEEEEEEEEeccCCCCCccCccCccchhHHHHHHHHHHHHH
Q 038842 94 VYRFEKIVPNSSYSGAVNINDPDEYILLFGNCQPEFQ-VSMFVKTEMHNSQHGIKDYLPAGQTQLPRLYLMFFFTYTLFF 172 (423)
Q Consensus 94 ~~~f~~~~~~~~~~~~~~V~~~g~Y~l~f~~C~~~~~-~~~~v~~~~~n~~~~~~~yLsa~~~PLp~~Y~~m~i~y~~~~ 172 (423)
.+++++.+ .+..+..++|+++|+|+++|..|+++.+ ...++++..+ ||+|||||.++||.++|++|+++|++++
T Consensus 143 ~~t~~~~e-~~m~~~~~~I~ktG~Y~v~~~~~~~s~~~~~~~~~v~wk----NpyGyL~a~~~Plm~fy~~m~laYvllg 217 (518)
T KOG2568|consen 143 ILTFNDAE-VGMSPPAYPIKKTGYYCVYFISCDSSLESYKATGSVNWK----NPYGYLPASDAPLMPFYGFMCLAYVLLG 217 (518)
T ss_pred eecccccc-cCCCCceEEeccCcEEEEEEEeecCccccccccceEEEE----CCCCCcChhhcccchHHHHHHHHHHHHH
Confidence 34554432 2456788999999999999999998753 3444445554 6999999999999999999999999999
Q ss_pred HHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCc-cchhHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 038842 173 VMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGT-PHGWDVAFYIFGLFKGIMLFTVIVLIGTGWSF 251 (423)
Q Consensus 173 ~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~-~~~w~v~~~I~~~lk~~l~f~lIlLIg~Gw~~ 251 (423)
++|.+.|+|+|+|++|+|++|+++++++|+|+++.+.+|.+.|.+|. |++..++..+++++|++++|+|+++||+|||+
T Consensus 218 llW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGI 297 (518)
T KOG2568|consen 218 LLWFFQCAQYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGI 297 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999999999999999999999999999999999999999 58889999999999999999999999999999
Q ss_pred ccccccccceeeeeehhhHHHHHHhhhheeccCCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhchHHH
Q 038842 252 LKPYLQEREKNVLMTVIPLQVLENIAYVVISETGPATQDWMAWNHMFLLIDIICCAAVFFPIIWSIRSLKEASKTDGKAA 331 (423)
Q Consensus 252 vkp~L~~~~kkv~~ivi~LqVlania~iii~~~~~~~~~~~~w~~i~~lvd~~cc~ailfpivwsi~~L~~as~td~ka~ 331 (423)
|||+||+...|+.+++..+++.+.+.-+.-......... ..| ..+.+++++.+.+ +.+.|++++|..+.+ +++.+
T Consensus 298 VkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~-~~~-~lf~~ip~ai~d~--~f~~wIF~SL~~Tlk-~Lr~r 372 (518)
T KOG2568|consen 298 VKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELS-SLL-ILFAALPLAILDA--AFIYWIFISLAKTLK-KLRLR 372 (518)
T ss_pred EecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCccccc-chh-hHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999988888888777666542221111111 112 3455666666665 457899999987765 48889
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHh--hhee--ee---eeeecccccccHHHHHHHHHHHHHHHHHHhhcccCCCCCceec
Q 038842 332 RNLEKLTLFKQFYIVVVGYLYFT--RIVV--PA---SAHVVNYRFEWTMYAAAEGASLVFYLFIFHNFQPTEKNPYFVV 403 (423)
Q Consensus 332 ~nl~KL~LFr~Fy~~vi~yiyft--~iiv--~~---l~~~~~~~~~Wv~~~~~e~~~lvf~v~i~~~fRP~~~N~y~~l 403 (423)
||..||+|||||.+++++.+... .+.+ +. ...-..|+.+|+.+++|.++.+..++++|++|||++||++++.
T Consensus 373 Rn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ryA~ 451 (518)
T KOG2568|consen 373 RNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQRYAF 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCccccc
Confidence 99999999999998766443211 1111 10 1123568889999999999999999999999999999997765
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.55 E-value=4.5e-13 Score=130.81 Aligned_cols=246 Identities=17% Similarity=0.280 Sum_probs=159.2
Q ss_pred EEEEEEEEEeccCCCCCccCccCccchhHHHHHHHHHHHHHHHHHH--HHHhhCcchhhHHHHHHHHHHHHHHHHHHhhh
Q 038842 132 SMFVKTEMHNSQHGIKDYLPAGQTQLPRLYLMFFFTYTLFFVMWVF--ICIKQRPIVDKIHIVMAALLLVKALKMICASE 209 (423)
Q Consensus 132 ~~~v~~~~~n~~~~~~~yLsa~~~PLp~~Y~~m~i~y~~~~~~W~~--~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~ 209 (423)
+++.++++.|.+++++.++|++|..+|.+|.++.++|+++.++-.. ...++|+..+++..++++.+++..++.++...
T Consensus 3 ~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~i 82 (257)
T PF10192_consen 3 KIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNLI 82 (257)
T ss_pred ceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888765578999999999999999999999998887443 34567889999999999999999999999999
Q ss_pred hhheecccCcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccceeee-eehhhHHHHHHhhhhe--eccCC
Q 038842 210 DKLYVSETGTP-HGWDVAFYIFGLFKGIMLFTVIVLIGTGWSFLKPYLQEREKNVL-MTVIPLQVLENIAYVV--ISETG 285 (423)
Q Consensus 210 ~y~~i~~~G~~-~~w~v~~~I~~~lk~~l~f~lIlLIg~Gw~~vkp~L~~~~kkv~-~ivi~LqVlania~ii--i~~~~ 285 (423)
.+.....+|.. ....++..++..+-+.++.++++++|.||++.|++++...+... .+.+.+.++.-+..+. ..+.+
T Consensus 83 h~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 162 (257)
T PF10192_consen 83 HYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYFD 162 (257)
T ss_pred HHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 98777799986 67888999999999999999999999999999999985544332 2333333333333333 11223
Q ss_pred CCc--chhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhchHHHhhHhHHHHHHHHHHHHHHHHHHhhheeeeeee
Q 038842 286 PAT--QDWMAWNHMFLLIDIICCAAVFFPIIWSIRSLKEASKTDGKAARNLEKLTLFKQFYIVVVGYLYFTRIVVPASAH 363 (423)
Q Consensus 286 ~~~--~~~~~w~~i~~lvd~~cc~ailfpivwsi~~L~~as~td~ka~~nl~KL~LFr~Fy~~vi~yiyft~iiv~~l~~ 363 (423)
+++ ..|-+|.-..+++= -+.-.+|-+-.++.+. +.+++.+|.+-|.+|...-..|....=+++..-..
T Consensus 163 ~~~~~~~y~s~pGy~li~l------ri~~~~~F~~~~~~t~----~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~ 232 (257)
T PF10192_consen 163 PHSYLYFYDSWPGYILIAL------RIVLAIWFIYGLYQTI----SKEKDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHF 232 (257)
T ss_pred cccceeecccHHHHHHHHH------HHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 22334432222211 1112233333333322 12344568777888876555554322222222222
Q ss_pred ecccccccHHHHHHHHHHHHHHHH
Q 038842 364 VVNYRFEWTMYAAAEGASLVFYLF 387 (423)
Q Consensus 364 ~~~~~~~Wv~~~~~e~~~lvf~v~ 387 (423)
..||...=+.......+.++++++
T Consensus 233 v~~~~R~kvv~~~~~~~~~~~~~~ 256 (257)
T PF10192_consen 233 VDPWVREKVVTGGNLLIQFIAYIV 256 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 444433233445555566655553
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=97.94 E-value=0.00038 Score=70.56 Aligned_cols=151 Identities=9% Similarity=0.189 Sum_probs=105.3
Q ss_pred eCCCCceEEEEeeccC----C-c-eeEEEEEEEEEeccC---CCCCc-cCccCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 038842 112 INDPDEYILLFGNCQP----E-F-QVSMFVKTEMHNSQH---GIKDY-LPAGQTQLPRLYLMFFFTYTLFFVMWVFICIK 181 (423)
Q Consensus 112 V~~~g~Y~l~f~~C~~----~-~-~~~~~v~~~~~n~~~---~~~~y-Lsa~~~PLp~~Y~~m~i~y~~~~~~W~~~~~~ 181 (423)
|..+-.|.++.+.|.. + + ..++..++-..|.|. .|-+| .|++|..+..+|+.|-++|+++.++=.....
T Consensus 115 iPgp~~W~v~l~acytCqw~dss~~ntI~ydi~LtNPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av~- 193 (429)
T KOG4290|consen 115 IPGPQTWHVFLAACYTCQWDDSSQMNTIGYDILLTNPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT- 193 (429)
T ss_pred cCCcceeeeeeeecccccccCcCccccccceEEEeCCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3557789999998852 1 1 233444444445442 26677 9999999999999999999999998887665
Q ss_pred hCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccc
Q 038842 182 QRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTP-HGWDVAFYIFGLFKGIMLFTVIVLIGTGWSFLKPYLQERE 260 (423)
Q Consensus 182 ~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~-~~w~v~~~I~~~lk~~l~f~lIlLIg~Gw~~vkp~L~~~~ 260 (423)
|.-.+.|...+.++..+.+...+...++--..+.|.. ........++......-..+++++.++||.+++|--+...
T Consensus 194 --rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~~ 271 (429)
T KOG4290|consen 194 --RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMSR 271 (429)
T ss_pred --cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhhccc
Confidence 4556777777888877777776666666444666663 1122333444555667888899999999999998776644
Q ss_pred eeeee
Q 038842 261 KNVLM 265 (423)
Q Consensus 261 kkv~~ 265 (423)
.-+.|
T Consensus 272 wds~m 276 (429)
T KOG4290|consen 272 WDSPM 276 (429)
T ss_pred cccch
Confidence 44445
No 6
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=97.13 E-value=0.00029 Score=71.88 Aligned_cols=81 Identities=9% Similarity=-0.046 Sum_probs=60.4
Q ss_pred CCceEEEEeeccCCc--eeEEEEEEEEEeccC--------CCCCccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhCc
Q 038842 115 PDEYILLFGNCQPEF--QVSMFVKTEMHNSQH--------GIKDYLPAGQTQLPRLYLMFFFTYTLFFVMWVFICIKQRP 184 (423)
Q Consensus 115 ~g~Y~l~f~~C~~~~--~~~~~v~~~~~n~~~--------~~~~yLsa~~~PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~ 184 (423)
++.|..+++-|.--. .....+-+.+--+|+ .++|+++++..|||.++-+|.++.+-....|+++.++++.
T Consensus 303 e~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~ 382 (440)
T KOG2569|consen 303 EPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTI 382 (440)
T ss_pred CcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 667778888886321 111111222222222 2899999999999999999999999999999999999999
Q ss_pred chhhHHHHHHH
Q 038842 185 IVDKIHIVMAA 195 (423)
Q Consensus 185 ~v~~Ih~~m~~ 195 (423)
.++++||+.-+
T Consensus 383 ~~fky~W~~~~ 393 (440)
T KOG2569|consen 383 AVFKYQWLSFA 393 (440)
T ss_pred cceeeeeHHHH
Confidence 99999998644
No 7
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.86 E-value=2.8 Score=32.29 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcccCCCCC-----c--eeccCcchHH
Q 038842 380 ASLVFYLFIFHNFQPTEKNP-----Y--FVVDDEEESE 410 (423)
Q Consensus 380 ~~lvf~v~i~~~fRP~~~N~-----y--~~l~d~e~~~ 410 (423)
+++.|+.++.+.|||..+.. + +.++||++|+
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~d~aa~~~l~l~Dd~q~~ 55 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEFDEAARGILPLNDDAQDA 55 (60)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhccCCCCCcchhhh
Confidence 56778888999999987654 3 5555555444
No 8
>PRK11715 inner membrane protein; Provisional
Probab=74.82 E-value=9.5 Score=40.51 Aligned_cols=108 Identities=11% Similarity=0.236 Sum_probs=53.1
Q ss_pred CcccccccceeEEEEeecc--c---CCCcceeeEEeCC-CCceEEEEeeccCCceeEEEEEEEEEeccCCCCCccCccCc
Q 038842 82 GFCSLSSRYAKLVYRFEKI--V---PNSSYSGAVNIND-PDEYILLFGNCQPEFQVSMFVKTEMHNSQHGIKDYLPAGQT 155 (423)
Q Consensus 82 ~~C~l~~~~~~~~~~f~~~--~---~~~~~~~~~~V~~-~g~Y~l~f~~C~~~~~~~~~v~~~~~n~~~~~~~yLsa~~~ 155 (423)
+.-.++|+|.+|-|.=+=+ + ..+.|+-+-+|+. ..-|.-.+.+|++.....-.+.+++.+. -+.|.-....
T Consensus 227 t~v~l~S~WphPSF~G~fLP~~R~It~~GF~A~W~is~l~r~~~q~~~~~~~~~~~~~~~~V~~~~P---Vd~Y~~~~RA 303 (436)
T PRK11715 227 TEVTLTSNWPHPSFVGDFLPAEREISESGFQAQWQVSHLARNYPQVFASGQDGNLNLPAFGVSLIDP---VDQYQKTERA 303 (436)
T ss_pred ceeEEEcCCcCCCCCCccCCCCCeeCCCCeeeEeechhhcCchhhhhhhccccccccceeEEEEecc---ccHHHHHHHH
Confidence 3445566666665422111 0 1234444444432 3333334567764111112334455543 2445544443
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHH
Q 038842 156 QLPRLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALL 197 (423)
Q Consensus 156 PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li 197 (423)
- =|++++++ +.++++.++-.. ++..+|++||++-++-
T Consensus 304 ~---KYgiLFI~-LTF~~fFlfE~~-~~~~iHpiQYlLVGlA 340 (436)
T PRK11715 304 V---KYAILFIA-LTFAAFFLFELL-KKLRIHPVQYLLVGLA 340 (436)
T ss_pred H---hHHHHHHH-HHHHHHHHHHHh-cCceecHHHHHHHHHH
Confidence 3 35555554 445555566553 5778999999996443
No 9
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=69.68 E-value=19 Score=38.28 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHH
Q 038842 161 YLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALL 197 (423)
Q Consensus 161 Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li 197 (423)
|+++++. +.+.++.++-.. ++..+|++||++-++-
T Consensus 300 YgiLFI~-LTF~~fflfE~~-~~~~iHpiQY~LVGlA 334 (430)
T PF06123_consen 300 YGILFIG-LTFLAFFLFELL-SKLRIHPIQYLLVGLA 334 (430)
T ss_pred HHHHHHH-HHHHHHHHHHHH-hcCcccHHHHHHHHHH
Confidence 6666555 334445555443 5678999999996543
No 10
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=68.22 E-value=10 Score=27.51 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=23.9
Q ss_pred HHHHHhhh--chHHHhhHhHHHHHHHHHHHHHHHHH
Q 038842 319 SLKEASKT--DGKAARNLEKLTLFKQFYIVVVGYLY 352 (423)
Q Consensus 319 ~L~~as~t--d~ka~~nl~KL~LFr~Fy~~vi~yiy 352 (423)
.+|.||+. +.+|++|++. ||-+|..+++|-+.
T Consensus 11 airras~ie~~~qar~~lq~--lfvnf~liliclll 44 (52)
T TIGR01294 11 AIRRASTIEMPQQARQNLQN--LFINFCLILICLLL 44 (52)
T ss_pred HHHHHHhccCCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45666654 5788888865 79999998888654
No 11
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=66.47 E-value=54 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCcccccccccccceeee
Q 038842 232 LFKGIMLFTVIVLIGTGWSFLKPYLQEREKNVL 264 (423)
Q Consensus 232 ~lk~~l~f~lIlLIg~Gw~~vkp~L~~~~kkv~ 264 (423)
++--++....=+++=.-|.|++|-|-++|||..
T Consensus 75 sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~ 107 (258)
T PRK10921 75 TFMVSLILSAPVILYQVWAFIAPALYKHERRLV 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 334455666667788999999999999998863
No 12
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=60.71 E-value=19 Score=26.15 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=23.3
Q ss_pred HHHHHhhh--chHHHhhHhHHHHHHHHHHHHHHHHH
Q 038842 319 SLKEASKT--DGKAARNLEKLTLFKQFYIVVVGYLY 352 (423)
Q Consensus 319 ~L~~as~t--d~ka~~nl~KL~LFr~Fy~~vi~yiy 352 (423)
.+|.||.. +.+|++|++. ||-+|..+++|-+.
T Consensus 11 airrastiev~~qa~qnlqe--lfvnfcliliclll 44 (52)
T PF04272_consen 11 AIRRASTIEVPQQARQNLQE--LFVNFCLILICLLL 44 (52)
T ss_dssp HHHHHHTSSSCHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34666654 5678888864 79999998888654
No 13
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=58.90 E-value=87 Score=28.71 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCccchhHHHHHHHHHHHHH
Q 038842 157 LPRLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTPHGWDVAFYIFGLFKGI 236 (423)
Q Consensus 157 Lp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~~~w~v~~~I~~~lk~~ 236 (423)
+|.-|.+.-+.|++ ..+|.. .+|..+-.+|-........-..-++.....|...+.+.+ .+|++.+.|++++=+=
T Consensus 28 ~p~aY~f~Nf~~l~-~~~WAi---~~kdSidaV~m~L~~~~~sI~~DIi~i~i~fp~~~~~d~-~~fs~gmaIlnLiLrP 102 (159)
T smart00805 28 FSGAYAWANFTILA-LGVWAV---AQRDSIDAIQMFLGGLLATIFLDILLISIFYTEVPLRDT-GRFGVGMAILSLLLKP 102 (159)
T ss_pred ccchhHHHhHHHHH-HHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHheeeccccccccc-chhhHHHHHHHHHHHH
Confidence 46667666666554 456877 357788999988877776666677777888877763222 4588888888876666
Q ss_pred HHHHHHH
Q 038842 237 MLFTVIV 243 (423)
Q Consensus 237 l~f~lIl 243 (423)
++..++-
T Consensus 103 ~S~~lly 109 (159)
T smart00805 103 LSCCLVY 109 (159)
T ss_pred HHHHHHH
Confidence 6655553
No 14
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=43.97 E-value=1.5e+02 Score=27.41 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCcc-chhHHHHHHHHHHHH
Q 038842 157 LPRLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTP-HGWDVAFYIFGLFKG 235 (423)
Q Consensus 157 Lp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~-~~w~v~~~I~~~lk~ 235 (423)
+|.-|.+--+.+++ ..+|.. .+|.++..+|..+.+.++.-+.-+...+.+|...+ +.. ..|+....|++++=+
T Consensus 28 ~p~sY~f~Nf~~l~-~gvWAi---~~~dSidav~~~l~~~~~sil~Dii~i~vyf~~~~--~~~~~~Fs~~maIinLllK 101 (162)
T PF06396_consen 28 LPGSYLFYNFLFLA-LGVWAI---HQRDSIDAVQMALVGLVFSILFDIIHIGVYFPSMN--LSDTDRFSAGMAIINLLLK 101 (162)
T ss_pred CCchhHHHHHHHHH-HHHHHH---hccCchHHHHHHHHHHHHHHHHHHheeEEeccccc--ccccchhhHHHHHHHHHHH
Confidence 45566666655544 456777 45778999999888777766666666566664433 232 567777777776555
Q ss_pred HHHHHHH
Q 038842 236 IMLFTVI 242 (423)
Q Consensus 236 ~l~f~lI 242 (423)
-++..++
T Consensus 102 P~s~~~l 108 (162)
T PF06396_consen 102 PISCFFL 108 (162)
T ss_pred HHHHHHH
Confidence 4444444
No 15
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=43.30 E-value=3.5e+02 Score=26.97 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=52.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhh----CcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCccchhHHHHHHH
Q 038842 155 TQLPRLYLMFFFTYTLFFVMWVFICIKQ----RPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTPHGWDVAFYIF 230 (423)
Q Consensus 155 ~PLp~~Y~~m~i~y~~~~~~W~~~~~~~----r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~~~w~v~~~I~ 230 (423)
.-.-.+|..++.+|++.+++=++++.|- ++.....|.+.-.++++-. ...+. |-.+...|....-.++.++.
T Consensus 22 ~~~~~~~~~La~iy~~v~~~aliQl~ri~~r~~~~~~t~qkvf~ll~~l~~---~~R~i-yF~~~~~~~~~~~~~~~~iL 97 (281)
T PF06454_consen 22 KWQDGLFYALAAIYLLVALVALIQLIRIQYRVPKYGWTTQKVFHLLIFLAN---LVRAI-YFFLLPSVFLIDPNVLDYIL 97 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccCccHHHHHHHHHHHHH---HHHeE-EEEEhHhhHhcChHHHHHHH
Confidence 3345678899999999988888877663 2223344444444444322 23344 33333444432233444566
Q ss_pred HHHHHHHHHHHHHHHhcCccccc
Q 038842 231 GLFKGIMLFTVIVLIGTGWSFLK 253 (423)
Q Consensus 231 ~~lk~~l~f~lIlLIg~Gw~~vk 253 (423)
..+=..++|++-.++-.=|.-+-
T Consensus 98 ~~lP~~lfFSty~llvlfWaeIy 120 (281)
T PF06454_consen 98 NDLPTFLFFSTYTLLVLFWAEIY 120 (281)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666766666655555443
No 16
>PF04875 DUF645: Protein of unknown function, DUF645; InterPro: IPR006959 This family contains uncharacterised proteins from Vibrio cholerae.
Probab=42.43 E-value=31 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.2
Q ss_pred eeccccCCCCcEEEEEEeeeeeecc
Q 038842 15 MFERFGFTEDGKAEVTIKDISWKSK 39 (423)
Q Consensus 15 ~~~~FGF~~~G~~~v~v~~~~~~~~ 39 (423)
.-.+|||.+|..+.+.+-+++.+.+
T Consensus 5 q~~kf~FtKg~IIA~i~lslsrtln 29 (59)
T PF04875_consen 5 QHGKFGFTKGCIIAVIWLSLSRTLN 29 (59)
T ss_pred cccccccccceEEEEEEEeeecccc
Confidence 3479999999999999987776543
No 17
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=38.77 E-value=2.1e+02 Score=27.57 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=42.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHh--hCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCcc
Q 038842 154 QTQLPRLYLMFFFTYTLFFVMWVFICIK--QRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTP 220 (423)
Q Consensus 154 ~~PLp~~Y~~m~i~y~~~~~~W~~~~~~--~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~ 220 (423)
+...-+++++...+++.--++-.+...+ +|+....+|..+.++.+.-.+-=+....++|..++.|.|
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~ 91 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIP 91 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3445677777777776666666665444 344556699988777666555545556667766655765
No 18
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.46 E-value=33 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.620 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcc
Q 038842 160 LYLMFFFTYTLFFVMWVFICIKQRPI 185 (423)
Q Consensus 160 ~Y~~m~i~y~~~~~~W~~~~~~~r~~ 185 (423)
-+++.+++|+++-+.|+..|.++||.
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 38899999999999999999776554
No 19
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=36.55 E-value=3.4e+02 Score=24.89 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 038842 161 YLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMI 205 (423)
Q Consensus 161 Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~ 205 (423)
....+++|.+.|.+|+..... |.+---+-+|++++.....+..+
T Consensus 6 ~i~iS~ifa~~G~~~llf~l~-~g~~dwil~wvgvlmaylSL~~l 49 (161)
T PF13042_consen 6 NIMISFIFAVGGMIWLLFNLF-MGGGDWILSWVGVLMAYLSLYIL 49 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHHH
Confidence 356789999999999986652 44455677888888776665543
No 20
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=35.55 E-value=5.1e+02 Score=26.66 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=54.6
Q ss_pred hCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCccchhHHHHHHH-HHHHHHHHHHHHHHHhcCcccccccc--cc
Q 038842 182 QRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTPHGWDVAFYIF-GLFKGIMLFTVIVLIGTGWSFLKPYL--QE 258 (423)
Q Consensus 182 ~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~~~w~v~~~I~-~~lk~~l~f~lIlLIg~Gw~~vkp~L--~~ 258 (423)
+|.-+.|+=-+++++...-++...+....-+|- .|.-++-...-.+. +..-+++-++..++.-.-|--+--++ ..
T Consensus 112 ~~~~L~k~~~l~~aI~lti~l~~~~~~~~~q~~--~g~~d~~~l~~~v~~~~~~~v~~lis~~~l~l~qvqiv~rlF~R~ 189 (348)
T PF08733_consen 112 RRPWLLKLAALLSAISLTIFLARSTKVLEEQYY--NGYQDAIELQDLVNNSLEYRVIDLISNFFLQLAQVQIVIRLFPRQ 189 (348)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccCHHHHHHHHhCCcceeeHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344466776677766666666655444443332 44432211111110 00001111222222222233333334 45
Q ss_pred cceeee-eehhhHHHHHHhhhheeccCCC---CcchhhhhhhhHHHHHHHH
Q 038842 259 REKNVL-MTVIPLQVLENIAYVVISETGP---ATQDWMAWNHMFLLIDIIC 305 (423)
Q Consensus 259 ~~kkv~-~ivi~LqVlania~iii~~~~~---~~~~~~~w~~i~~lvd~~c 305 (423)
++|++. .++..|-++.++...+..-... ..+....|.....++.++.
T Consensus 190 ~eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~ial 240 (348)
T PF08733_consen 190 KEKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRIAL 240 (348)
T ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHHHH
Confidence 567764 4555677777777766442221 2223344555566666543
No 21
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=33.80 E-value=4.3e+02 Score=25.63 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhh
Q 038842 163 MFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASE 209 (423)
Q Consensus 163 ~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~ 209 (423)
+-.+.|+++++...+.+.+ ++.-.+.+....++++.+.-|.++|+.
T Consensus 31 lSNl~fi~~al~gl~~~~~-~~~~~~~~l~~~~l~~VGiGS~~FHaT 76 (262)
T PF05875_consen 31 LSNLAFIVAALYGLYLARR-RGLERRFALLYLGLALVGIGSFLFHAT 76 (262)
T ss_pred HHHHHHHHHHHHHHHHHhh-ccccchhHHHHHHHHHHHHhHHHHHhC
Confidence 4556677777776666655 444556677777788888889888863
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.15 E-value=3.4e+02 Score=33.17 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=12.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC
Q 038842 157 LPRLYLMFFFTYTLFFVMWVFICIKQR 183 (423)
Q Consensus 157 Lp~~Y~~m~i~y~~~~~~W~~~~~~~r 183 (423)
|..++++++.+..+++++|.+.+++++
T Consensus 75 L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 75 LFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555444444444444443
No 23
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=29.76 E-value=79 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 038842 160 LYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKL 212 (423)
Q Consensus 160 ~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~ 212 (423)
+|+..|++-.....+=+..|+|+..---|.+++|..+.+.-.+-.++.-.++|
T Consensus 62 iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~ivllci~anlYf~ 114 (118)
T PF10856_consen 62 IFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNCFSIVLLCICANLYFH 114 (118)
T ss_pred EehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHHHHHHHHHHhheeEEe
Confidence 34444444444333333444444433346666666655544444444333333
No 24
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.60 E-value=90 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcccCCCCCceeccCcchHHHHhhcc
Q 038842 381 SLVFYLFIFHNFQPTEKNPYFVVDDEEESEARQILE 416 (423)
Q Consensus 381 ~lvf~v~i~~~fRP~~~N~y~~l~d~e~~~~~~~l~ 416 (423)
..+|..++.|.|||.+. ++=||++...++
T Consensus 19 ~~~F~gi~~w~~~~~~k-------~~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNK-------KRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccch-------hhHHHHHccCcc
Confidence 34445667788999852 223556666666
No 25
>PRK15301 hypothetical protein; Provisional
Probab=25.43 E-value=39 Score=31.86 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.4
Q ss_pred ccccCCCCcEEEEEEeeeeeecc
Q 038842 17 ERFGFTEDGKAEVTIKDISWKSK 39 (423)
Q Consensus 17 ~~FGF~~~G~~~v~v~~~~~~~~ 39 (423)
++|+|.++|.+.|.++|..++.+
T Consensus 84 grf~fg~~G~~~vklsda~lDGk 106 (186)
T PRK15301 84 GRFLFGNNGGLAVKVSQMILDGK 106 (186)
T ss_pred CcEEEcCCCcEEEEEhhhEECCc
Confidence 46999999999999999998754
No 26
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=23.78 E-value=3.4e+02 Score=26.96 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=46.1
Q ss_pred CcceeeEEeC-----CCCceEEEEeeccCCceeEEEEEEEEEeccCCCCCccCccCccchhHHHHHHHHHHHHHHHHHHH
Q 038842 104 SSYSGAVNIN-----DPDEYILLFGNCQPEFQVSMFVKTEMHNSQHGIKDYLPAGQTQLPRLYLMFFFTYTLFFVMWVFI 178 (423)
Q Consensus 104 ~~~~~~~~V~-----~~g~Y~l~f~~C~~~~~~~~~v~~~~~n~~~~~~~yLsa~~~PLp~~Y~~m~i~y~~~~~~W~~~ 178 (423)
.+|.+-|-+- .+|.|.+.+.|=.|-....-+=.+-+.+ .+.+.+....|..+|+++.+++++++++=+..
T Consensus 192 p~FrKLYg~i~~~~L~~G~y~i~I~nnypv~~f~G~K~ivlst-----~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~ 266 (278)
T PF03381_consen 192 PTFRKLYGRIDNDDLPAGNYTIDITNNYPVSSFGGKKSIVLST-----TSWFGGKNYFLGIAYLVVGGICLVLAIIFLII 266 (278)
T ss_pred CCeeEeEeeeccCCCCCceEEEEEEEeecccccCcEEEEEEEe-----ccccCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 3788999888766632110011112222 45677777889999999999998888776665
Q ss_pred HHhh
Q 038842 179 CIKQ 182 (423)
Q Consensus 179 ~~~~ 182 (423)
.+.+
T Consensus 267 ~~~~ 270 (278)
T PF03381_consen 267 HYFK 270 (278)
T ss_pred HHhC
Confidence 4443
No 27
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=23.75 E-value=5.2e+02 Score=22.92 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHh
Q 038842 159 RLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICA 207 (423)
Q Consensus 159 ~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~ 207 (423)
...+..+.+..++.+.|.+.+.++++...+...+...++.+-.+..+++
T Consensus 60 ~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 60 QLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred hccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888887666667777766666665555543
No 28
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.66 E-value=5.4e+02 Score=23.09 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=41.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHh--hCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCcc-----chhHH
Q 038842 154 QTQLPRLYLMFFFTYTLFFVMWVFICIK--QRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGTP-----HGWDV 225 (423)
Q Consensus 154 ~~PLp~~Y~~m~i~y~~~~~~W~~~~~~--~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~~-----~~w~v 225 (423)
+...-+++++...+++..-++=.+...+ +|+...++|..+.++.++-.+-=+...+++|. .+|.| |+|.-
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~--~~~~~hf~SlHswlG 82 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQ--ANGYPDMYSLHSWCG 82 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCccccHHHHHH
Confidence 3445567777777766555554443333 46667789998887776655554444455554 34554 56653
No 29
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=22.82 E-value=42 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCccc
Q 038842 234 KGIMLFTVIVLIGTGWSF 251 (423)
Q Consensus 234 k~~l~f~lIlLIg~Gw~~ 251 (423)
|.+++|..|+.++.||++
T Consensus 2 R~~lLf~aiLalsla~s~ 19 (59)
T PF03823_consen 2 RSTLLFAAILALSLARSF 19 (59)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 678999999999999998
No 30
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=22.77 E-value=1.9e+02 Score=29.21 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcchhh-----------HH-HHHHHHHHHHHHHHHHhhhhhheecccCccchhHHHHHH
Q 038842 162 LMFFFTYTLFFVMWVFICIKQRPIVDK-----------IH-IVMAALLLVKALKMICASEDKLYVSETGTPHGWDVAFYI 229 (423)
Q Consensus 162 ~~m~i~y~~~~~~W~~~~~~~r~~v~~-----------Ih-~~m~~li~lk~l~l~~~~~~y~~i~~~G~~~~w~v~~~I 229 (423)
..++.+|+++.++=+.++.||.+.-++ -| |||..+.+.++++++. ++|-.----.|.|-....++|
T Consensus 51 I~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~-~IDVDR~yl~~~piil~sfF~- 128 (296)
T PF10361_consen 51 IAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFM-SIDVDRYYLQGLPIILQSFFW- 128 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhhe-eeeecHHhcccccHHHHHHHH-
Confidence 467778888888888999998655433 33 4788888888888742 333221113344433333322
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccceee
Q 038842 230 FGLFKGIMLFTVIVLIGTGWSFLKPYLQEREKNV 263 (423)
Q Consensus 230 ~~~lk~~l~f~lIlLIg~Gw~~vkp~L~~~~kkv 263 (423)
..++...++.=|-.||+.-+-.|++.
T Consensus 129 --------~l~~~~~lA~vWE~VRhWGSw~ERQ~ 154 (296)
T PF10361_consen 129 --------YLMQPGTLAAVWEAVRHWGSWQERQF 154 (296)
T ss_pred --------HHHHHHHHHHHHHHHhhhhchhhhcc
Confidence 11233445566999999888777654
No 31
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=21.64 E-value=1.1e+02 Score=22.06 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 038842 303 IICCAAVFFPIIWSIRSLKE 322 (423)
Q Consensus 303 ~~cc~ailfpivwsi~~L~~ 322 (423)
..|+.+++.|=.|...||++
T Consensus 20 ~~~f~~~L~p~gWVLshL~~ 39 (43)
T cd00930 20 SVFFTTFLLPAGWVLSHLEN 39 (43)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 57788899999999999975
No 32
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=21.06 E-value=1.1e+02 Score=30.88 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHhcCcccccccccccceee---eeehhhHHHHHHhh
Q 038842 244 LIGTGWSFLKPYLQEREKNV---LMTVIPLQVLENIA 277 (423)
Q Consensus 244 LIg~Gw~~vkp~L~~~~kkv---~~ivi~LqVlania 277 (423)
--++||.+ .-+|+-.|+.. ++.++||.++.++.
T Consensus 240 wfn~g~e~-hrRl~~iE~nWPYffGFG~PLa~lt~~s 275 (360)
T KOG3966|consen 240 WFNYGLEF-HRRLDIIESNWPYFFGFGTPLALLTSIS 275 (360)
T ss_pred hccccHHH-HHHHHHHHhcCchhccCCcHHHHHHhhh
Confidence 45788887 44566666665 88999999987773
No 33
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=20.66 E-value=4.4e+02 Score=28.70 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhheecccCc-c-chhHHHHHHHHHHHHHHHHHH
Q 038842 169 TLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLYVSETGT-P-HGWDVAFYIFGLFKGIMLFTV 241 (423)
Q Consensus 169 ~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~i~~~G~-~-~~w~v~~~I~~~lk~~l~f~l 241 (423)
+++.+.|...+++.+.+.-||+.+=++++++-++-++.+|..|.. +..+. . +.-.|+.|..++ -.+++|+-
T Consensus 143 iLlig~WAlf~R~~~a~lPRif~fRa~ll~Lvfl~~~syWLFY~v-rIl~~~~~dy~~IV~yA~Sl-vDaLLFiH 215 (505)
T PF06638_consen 143 ILLIGTWALFFRRPRADLPRIFVFRALLLVLVFLFLFSYWLFYGV-RILDPRESDYQGIVSYAVSL-VDALLFIH 215 (505)
T ss_pred HHHHHHHHHhcCcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhh-eeeechhhhHHHHHHHHHHH-HHHHHHHH
Confidence 566778999998889999999999999999999988888877742 22222 1 333455554444 45666653
No 34
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.52 E-value=4.4e+02 Score=22.60 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=29.1
Q ss_pred ceeeeeehhhHHHHHHhhhheeccCCCCcchhhhhhhhHHHH
Q 038842 260 EKNVLMTVIPLQVLENIAYVVISETGPATQDWMAWNHMFLLI 301 (423)
Q Consensus 260 ~kkv~~ivi~LqVlania~iii~~~~~~~~~~~~w~~i~~lv 301 (423)
.++++.|++.+.++..++|....-.+-.+.+-..|.+.++++
T Consensus 3 R~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~ 44 (104)
T PF11460_consen 3 RIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVL 44 (104)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHH
Confidence 456788888888888888887665554444445688876654
No 35
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=20.27 E-value=3e+02 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=36.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhCc--chhhHHHHHHHHHHHHHH
Q 038842 155 TQLPRLYLMFFFTYTLFFVMWVFICIKQRP--IVDKIHIVMAALLLVKAL 202 (423)
Q Consensus 155 ~PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~--~v~~Ih~~m~~li~lk~l 202 (423)
.+....+..+++.|.+.-..+.....++++ ...-+||+++.+.+....
T Consensus 42 ~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH~~~l~~~~~~~ 91 (198)
T PF03798_consen 42 SWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHHVVTLVLFYFSY 91 (198)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHhh
Confidence 346777899999999998888887666655 578899998877755433
No 36
>PHA02898 virion envelope protein; Provisional
Probab=20.14 E-value=2.6e+02 Score=23.34 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhheecccCcc--chhHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccc
Q 038842 198 LVKALKMICASEDKLYVSETGTP--HGWDVAFYIFGLFKGIMLFTVIVLIGTGWS-FLKPYL 256 (423)
Q Consensus 198 ~lk~l~l~~~~~~y~~i~~~G~~--~~w~v~~~I~~~lk~~l~f~lIlLIg~Gw~-~vkp~L 256 (423)
+|..++++|.++|+. +++.| ..|..+. +..++=| +..++=+++.+||+ ...|.-
T Consensus 20 iLL~~ACIfAfidfS---K~~~~~~~~wRalS-ii~FIlg-ivl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 20 ILLIVACICAYIELS---KSEKPADSALRSIS-IISFILA-IILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred HHHHHHHHHheehhh---cCCCcchhHHHHHH-HHHHHHH-HHHHHHHHHHHHHhhhcCCCc
Confidence 345566777777765 55555 4677654 2333333 23344556778898 766643
Done!