Query 038842
Match_columns 423
No_of_seqs 178 out of 334
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjk_A Cardiac phospholamban; 60.3 11 0.00039 26.3 4.0 32 319-352 11-44 (52)
2 4ea3_A Fusion protein of nocic 24.6 4.6E+02 0.016 25.0 13.8 15 187-201 158-172 (434)
3 1nqj_A Class 1 collagenase; be 22.2 2.3E+02 0.0079 23.4 6.8 63 19-125 45-107 (119)
4 3odu_A C-X-C chemokine recepto 14.8 7.7E+02 0.026 23.5 12.0 14 187-200 81-94 (502)
5 3eml_A Human adenosine A2A rec 13.1 8.3E+02 0.028 23.0 14.1 12 188-199 55-66 (488)
6 2kix_A BM2 protein; channel, t 12.3 2.3E+02 0.008 17.8 3.2 12 311-322 19-30 (33)
7 1vf5_F Protein PET M; photosyn 11.7 87 0.003 20.7 1.2 25 233-257 6-30 (35)
8 1yod_A Water-solublized phosph 11.1 2.7E+02 0.0091 17.4 3.2 22 329-352 2-23 (30)
9 2z73_A Rhodopsin; visual pigme 10.1 1E+03 0.036 22.3 17.1 17 188-204 68-84 (448)
10 1q90_M Cytochrome B6F complex 8.9 1.2E+02 0.0042 20.4 1.2 25 233-257 7-31 (39)
No 1
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=60.25 E-value=11 Score=26.30 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=23.3
Q ss_pred HHHHHhhh--chHHHhhHhHHHHHHHHHHHHHHHHH
Q 038842 319 SLKEASKT--DGKAARNLEKLTLFKQFYIVVVGYLY 352 (423)
Q Consensus 319 ~L~~as~t--d~ka~~nl~KL~LFr~Fy~~vi~yiy 352 (423)
.+|.||.. ..+|++|++. ||-+|..++||-+.
T Consensus 11 airras~ie~~~qarqnlqe--lfvnfcliliclll 44 (52)
T 1fjk_A 11 AIRRASTIEMPQQARQNLQN--LFINFCLILIFLLL 44 (52)
T ss_dssp HHHHHHSSSSHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45666654 4678888864 79999988888654
No 2
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=24.60 E-value=4.6e+02 Score=24.99 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHH
Q 038842 187 DKIHIVMAALLLVKA 201 (423)
Q Consensus 187 ~~Ih~~m~~li~lk~ 201 (423)
.+..+++..+.+.-+
T Consensus 158 ~~~~~ll~~LAvsDl 172 (434)
T 4ea3_A 158 TATNIYIFNLALADT 172 (434)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 455566655544443
No 3
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=22.23 E-value=2.3e+02 Score=23.43 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=35.1
Q ss_pred ccCCCCcEEEEEEeeeeeeccccCcCCCCCCCCCCCCCCceeEEEEEecCChhhhhhhhccccCcccccccceeEEEEee
Q 038842 19 FGFTEDGKAEVTIKDISWKSKKQNYNNGNNNNKDQVLNPSSLGFFFVRDLAFPVMINESQYIEGFCSLSSRYAKLVYRFE 98 (423)
Q Consensus 19 FGF~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~L~~~~~~~~~~~~~~~~~~~C~l~~~~~~~~~~f~ 98 (423)
|=-.+.|.++|++++-. ...+.+.|+.++.+.++.. +.-+
T Consensus 45 f~v~~~g~v~I~l~~~~---------------------~~~~~w~ly~~~dl~nyv~--------y~~~----------- 84 (119)
T 1nqj_A 45 FEVKEEGEVNIELDKKD---------------------EFGVTWTLHPESNINDRIT--------YGQV----------- 84 (119)
T ss_dssp EEESSCEEEEEEEEESS---------------------SSEEEEEEEECC----CCE--------ECEE-----------
T ss_pred EECCCCCeEEEEEEeCC---------------------CCCEEEEEEccCCCccceE--------Eeec-----------
Confidence 33478899988886211 2347788888776554321 1100
Q ss_pred cccCCCcceeeEEeCCCCceEEEEeec
Q 038842 99 KIVPNSSYSGAVNINDPDEYILLFGNC 125 (423)
Q Consensus 99 ~~~~~~~~~~~~~V~~~g~Y~l~f~~C 125 (423)
+ +.....++.+. +|.|+|....+
T Consensus 85 --~-gn~~~~~~~~~-pGkYYl~Vy~y 107 (119)
T 1nqj_A 85 --D-GNKVSNKVKLR-PGKYYLLVYKY 107 (119)
T ss_dssp --E-TTEEEEEEEEC-SEEEEEEEEEE
T ss_pred --C-CCcEEEEEEcC-CcEEEEEEEEe
Confidence 0 12233555654 99999999887
No 4
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=14.83 E-value=7.7e+02 Score=23.52 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHH
Q 038842 187 DKIHIVMAALLLVK 200 (423)
Q Consensus 187 ~~Ih~~m~~li~lk 200 (423)
.+.+.++.-+.+.-
T Consensus 81 ~~~~~~l~~La~~D 94 (502)
T 3odu_A 81 SMTDKYRLHLSVAD 94 (502)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555444433
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=13.14 E-value=8.3e+02 Score=23.05 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 038842 188 KIHIVMAALLLV 199 (423)
Q Consensus 188 ~Ih~~m~~li~l 199 (423)
+.+.++..+.+.
T Consensus 55 ~~~~~l~~La~a 66 (488)
T 3eml_A 55 VTNYFVVSLAAA 66 (488)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 455555544433
No 6
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=12.33 E-value=2.3e+02 Score=17.83 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 038842 311 FPIIWSIRSLKE 322 (423)
Q Consensus 311 fpivwsi~~L~~ 322 (423)
-.+.|+|.||++
T Consensus 19 hf~awtighlnq 30 (33)
T 2kix_A 19 HFIAWTIGHLNQ 30 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 468899999964
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=11.67 E-value=87 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhcCccccccccc
Q 038842 233 FKGIMLFTVIVLIGTGWSFLKPYLQ 257 (423)
Q Consensus 233 lk~~l~f~lIlLIg~Gw~~vkp~L~ 257 (423)
++.+.....+.++|..||++--.++
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhheee
Confidence 3457778888899999998654444
No 8
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=11.09 E-value=2.7e+02 Score=17.44 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHH
Q 038842 329 KAARNLEKLTLFKQFYIVVVGYLY 352 (423)
Q Consensus 329 ka~~nl~KL~LFr~Fy~~vi~yiy 352 (423)
+|++|++. ||-+|...+||-..
T Consensus 2 qArqNlQ~--LfvNfcLilICllL 23 (30)
T 1yod_A 2 QARQNLQN--LYINRCLREICQEL 23 (30)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHH
Confidence 46778764 78899988887543
No 9
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=10.05 E-value=1e+03 Score=22.34 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038842 188 KIHIVMAALLLVKALKM 204 (423)
Q Consensus 188 ~Ih~~m~~li~lk~l~l 204 (423)
....+|..+.+.-++..
T Consensus 68 ~~~~ll~~LaiaDll~~ 84 (448)
T 2z73_A 68 PANMFIINLAFSDFTFS 84 (448)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH
Confidence 44555555554444433
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=8.92 E-value=1.2e+02 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCccccccccc
Q 038842 233 FKGIMLFTVIVLIGTGWSFLKPYLQ 257 (423)
Q Consensus 233 lk~~l~f~lIlLIg~Gw~~vkp~L~ 257 (423)
++.+.....+.|+|..|||+-=.++
T Consensus 7 f~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457778888899999998654443
Done!