Query 038842
Match_columns 423
No_of_seqs 178 out of 334
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 05:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 30.8 1.4E+02 0.01 24.8 16.0 38 159-197 6-43 (226)
2 d1xoub_ a.231.1.2 (B:) EspA ch 9.6 1E+02 0.0072 21.6 2.8 22 316-337 36-57 (84)
3 d1h2sa_ f.13.1.1 (A:) Sensory 6.7 5.9E+02 0.043 20.6 16.2 34 316-354 141-175 (225)
4 d1m56c_ f.25.1.1 (C:) Bacteria 6.0 6.8E+02 0.05 20.7 12.3 67 146-213 121-187 (265)
5 d1xu1a_ b.22.1.1 (A:) A prolif 5.6 2.6E+02 0.019 21.1 4.1 20 108-127 40-59 (137)
6 d1kxga_ b.22.1.1 (A:) Soluble 5.2 4.2E+02 0.03 20.1 5.1 22 107-128 41-62 (144)
7 d1olma2 b.132.1.1 (A:275-393) 4.9 3.8E+02 0.028 19.6 4.6 32 105-136 74-108 (119)
8 d2ftxb1 d.300.1.2 (B:155-213) 4.8 1E+02 0.0075 20.9 0.8 12 333-344 4-15 (59)
9 d1ov9a_ a.155.1.1 (A:) H-NS-li 4.5 2.7E+02 0.019 17.6 2.6 24 316-339 8-33 (45)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.6 1.5E+02 0.011 17.2 0.7 6 367-372 12-17 (34)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=30.75 E-value=1.4e+02 Score=24.83 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHH
Q 038842 159 RLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALL 197 (423)
Q Consensus 159 ~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li 197 (423)
.+|.+.++...+.+++-.... ++.+...|..+.+++++
T Consensus 6 ~~~wv~~~~m~~~~~~f~~~~-~~~~~~~r~~~~~~~~I 43 (226)
T d1xioa_ 6 LLHWIYVAGMTIGALHFWSLS-RNPRGVPQYEYLVAMFI 43 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccCCccchhhHHHHHHH
Confidence 466666666666555544433 34444456666665544
No 2
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=9.58 E-value=1e+02 Score=21.60 Aligned_cols=22 Identities=50% Similarity=0.646 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhchHHHhhHhHH
Q 038842 316 SIRSLKEASKTDGKAARNLEKL 337 (423)
Q Consensus 316 si~~L~~as~td~ka~~nl~KL 337 (423)
..+.|.+-++||++|+..+.||
T Consensus 36 nvn~lsekaktdpqaaeklnkl 57 (84)
T d1xoub_ 36 SVNELSEKAKTDPQAAEKLNKL 57 (84)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 5678888899999999887775
No 3
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=6.65 E-value=5.9e+02 Score=20.57 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhchHHHhhHhHHHHHHHHHH-HHHHHHHHh
Q 038842 316 SIRSLKEASKTDGKAARNLEKLTLFKQFYI-VVVGYLYFT 354 (423)
Q Consensus 316 si~~L~~as~td~ka~~nl~KL~LFr~Fy~-~vi~yiyft 354 (423)
....++++++...+.. -++|++..+ +++++..++
T Consensus 141 l~~~~~~~a~~~~~~~-----~~~~~~l~~~~~v~W~iYP 175 (225)
T d1h2sa_ 141 LVGPMTESASQRSSGI-----KSLYVRLRNLTVILWAIYP 175 (225)
T ss_dssp HHTHHHHHHTTSCHHH-----HHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhcchHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4566666544322221 134444443 345555555
No 4
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.05 E-value=6.8e+02 Score=20.67 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=39.7
Q ss_pred CCCccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHhhhhhhe
Q 038842 146 IKDYLPAGQTQLPRLYLMFFFTYTLFFVMWVFICIKQRPIVDKIHIVMAALLLVKALKMICASEDKLY 213 (423)
Q Consensus 146 ~~~yLsa~~~PLp~~Y~~m~i~y~~~~~~W~~~~~~~r~~v~~Ih~~m~~li~lk~l~l~~~~~~y~~ 213 (423)
|.|.-+-...++|. --...++-..+.+.|.....++++.-...-+.+...++++.+=+..++.+|..
T Consensus 121 p~g~~~~~~~~l~l-~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~ 187 (265)
T d1m56c_ 121 PEGIITFDPWHLPL-INTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSH 187 (265)
T ss_dssp CTTCCCCCTTTTHH-HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccchhhhHH-HHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444334443 33445555667778887766555555555556666666777766777777754
No 5
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.62 E-value=2.6e+02 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.3
Q ss_pred eeEEeCCCCceEEEEeeccC
Q 038842 108 GAVNINDPDEYILLFGNCQP 127 (423)
Q Consensus 108 ~~~~V~~~g~Y~l~f~~C~~ 127 (423)
+...|.++|.|++|-.-|-.
T Consensus 40 g~L~V~~~G~YyVYsQV~f~ 59 (137)
T d1xu1a_ 40 DIVRVWDTGIYLLYSQVLFH 59 (137)
T ss_dssp TEEEECSCEEEEEEEEEEEE
T ss_pred CEEEEccceEEEEEEEEEEE
Confidence 66788889999888776643
No 6
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.16 E-value=4.2e+02 Score=20.08 Aligned_cols=22 Identities=0% Similarity=0.070 Sum_probs=16.8
Q ss_pred eeeEEeCCCCceEEEEeeccCC
Q 038842 107 SGAVNINDPDEYILLFGNCQPE 128 (423)
Q Consensus 107 ~~~~~V~~~g~Y~l~f~~C~~~ 128 (423)
++...|.++|.|++|-.-+-.+
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~ 62 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTD 62 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECC
T ss_pred CCEEEEccceEEEEEEEEEEeC
Confidence 4677888999999887777543
No 7
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.91 E-value=3.8e+02 Score=19.62 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=23.1
Q ss_pred cceeeEEeCCCCceEEEEeeccCC---ceeEEEEE
Q 038842 105 SYSGAVNINDPDEYILLFGNCQPE---FQVSMFVK 136 (423)
Q Consensus 105 ~~~~~~~V~~~g~Y~l~f~~C~~~---~~~~~~v~ 136 (423)
...+++.+.++|.|.|.|=|-..- ..+.|.++
T Consensus 74 p~~g~~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~ 108 (119)
T d1olma2 74 PEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVE 108 (119)
T ss_dssp CEEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEE
T ss_pred eEccEEEcCCCEEEEEEEeCCcceEEeeEEEEEEE
Confidence 346888999999999999887542 24555444
No 8
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.76 E-value=1e+02 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.586 Sum_probs=9.6
Q ss_pred hHhHHHHHHHHH
Q 038842 333 NLEKLTLFKQFY 344 (423)
Q Consensus 333 nl~KL~LFr~Fy 344 (423)
++-||++||..-
T Consensus 4 ~iLkLklYRSLG 15 (59)
T d2ftxb1 4 NILKLKLYRSLG 15 (59)
T ss_dssp HHHHHHHHHHTT
T ss_pred ceeeeeehhhcc
Confidence 667999999854
No 9
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=4.53 E-value=2.7e+02 Score=17.58 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=14.0
Q ss_pred HHHHHHHHhhh--chHHHhhHhHHHH
Q 038842 316 SIRSLKEASKT--DGKAARNLEKLTL 339 (423)
Q Consensus 316 si~~L~~as~t--d~ka~~nl~KL~L 339 (423)
-+|+||.+++. -.+.-.-+.||+.
T Consensus 8 NiRSLRA~~ReltlEQLee~LeKl~~ 33 (45)
T d1ov9a_ 8 NIRSLRAYARELTIEQLEEALDKLTT 33 (45)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 47999988764 1233334566543
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.63 E-value=1.5e+02 Score=17.21 Aligned_cols=6 Identities=33% Similarity=0.944 Sum_probs=2.8
Q ss_pred cccccH
Q 038842 367 YRFEWT 372 (423)
Q Consensus 367 ~~~~Wv 372 (423)
|+.-|+
T Consensus 12 yekgwl 17 (34)
T d1xmeb2 12 YEKGWL 17 (34)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 344455
Done!