Query 038843
Match_columns 283
No_of_seqs 155 out of 1858
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-38 1.8E-42 306.2 23.4 270 12-283 15-379 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 7.7E-27 1.7E-31 204.7 12.4 145 138-282 1-218 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.5E-23 3.2E-28 214.2 17.9 150 131-283 182-411 (1153)
4 PRK09376 rho transcription ter 98.5 2.7E-07 5.8E-12 83.0 7.3 75 144-219 158-235 (416)
5 cd01128 rho_factor Transcripti 98.5 5.5E-07 1.2E-11 77.2 7.6 72 145-217 6-80 (249)
6 PRK00080 ruvB Holliday junctio 98.2 1.2E-05 2.7E-10 71.9 11.3 51 129-179 21-76 (328)
7 TIGR00635 ruvB Holliday juncti 98.2 1E-05 2.2E-10 71.6 10.2 48 132-179 3-55 (305)
8 PF05496 RuvB_N: Holliday junc 98.2 1.7E-05 3.7E-10 66.2 9.5 51 129-179 20-75 (233)
9 PF13191 AAA_16: AAA ATPase do 98.1 3.9E-06 8.5E-11 68.2 5.6 47 135-181 2-51 (185)
10 TIGR00767 rho transcription te 98.1 8.1E-06 1.8E-10 73.9 7.7 65 152-217 166-232 (415)
11 TIGR03015 pepcterm_ATPase puta 98.1 0.00015 3.1E-09 62.9 14.8 29 151-179 40-68 (269)
12 PRK04841 transcriptional regul 98.1 5.8E-05 1.3E-09 76.4 13.7 55 132-195 13-67 (903)
13 PRK00411 cdc6 cell division co 98.0 2.9E-05 6.4E-10 71.2 9.2 62 132-193 29-94 (394)
14 TIGR02928 orc1/cdc6 family rep 98.0 3E-05 6.6E-10 70.3 8.4 47 133-179 15-65 (365)
15 PF01637 Arch_ATPase: Archaeal 97.9 8.8E-06 1.9E-10 68.4 4.1 44 135-178 1-44 (234)
16 PRK11331 5-methylcytosine-spec 97.9 4.9E-05 1.1E-09 69.9 8.7 68 133-202 175-242 (459)
17 PRK08118 topology modulation p 97.9 7.4E-06 1.6E-10 66.1 2.8 50 155-205 2-56 (167)
18 cd00009 AAA The AAA+ (ATPases 97.9 5.9E-05 1.3E-09 58.1 7.5 58 137-196 2-59 (151)
19 PF05729 NACHT: NACHT domain 97.8 5.5E-05 1.2E-09 60.1 6.8 41 155-195 1-45 (166)
20 PTZ00202 tuzin; Provisional 97.8 0.00014 3E-09 66.5 8.8 52 128-179 257-311 (550)
21 PRK06893 DNA replication initi 97.7 0.0017 3.6E-08 55.1 14.0 27 153-179 38-64 (229)
22 PRK12323 DNA polymerase III su 97.7 0.00051 1.1E-08 66.0 11.3 51 129-179 12-63 (700)
23 PRK05564 DNA polymerase III su 97.6 0.0013 2.8E-08 58.5 12.9 70 132-201 3-78 (313)
24 PRK07003 DNA polymerase III su 97.6 0.00097 2.1E-08 65.0 12.3 50 129-178 12-62 (830)
25 PF13207 AAA_17: AAA domain; P 97.6 7.3E-05 1.6E-09 56.5 3.5 23 156-178 1-23 (121)
26 COG2255 RuvB Holliday junction 97.5 0.0014 2.9E-08 56.5 10.5 53 129-181 22-79 (332)
27 PRK06696 uridine kinase; Valid 97.5 0.00019 4E-09 60.7 5.1 43 137-179 2-47 (223)
28 PRK09087 hypothetical protein; 97.4 0.0067 1.5E-07 51.3 14.3 120 151-271 41-199 (226)
29 PRK07261 topology modulation p 97.4 0.00023 5E-09 57.6 5.0 48 156-203 2-50 (171)
30 PRK08084 DNA replication initi 97.4 0.0087 1.9E-07 51.0 14.3 40 140-179 31-70 (235)
31 PRK08727 hypothetical protein; 97.3 0.01 2.2E-07 50.5 14.2 59 132-192 18-77 (233)
32 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00034 7.4E-09 62.7 5.3 46 134-179 52-103 (361)
33 KOG2028 ATPase related to the 97.3 0.00043 9.4E-09 61.5 5.6 57 145-205 153-213 (554)
34 PF13401 AAA_22: AAA domain; P 97.3 0.00024 5.2E-09 54.3 3.6 53 153-205 3-58 (131)
35 PRK12402 replication factor C 97.3 0.00045 9.8E-09 61.8 5.9 51 129-179 11-61 (337)
36 PRK13342 recombination factor 97.3 0.00025 5.4E-09 65.6 4.0 50 130-179 9-61 (413)
37 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00083 1.8E-08 56.5 6.7 43 137-179 21-63 (226)
38 PRK14958 DNA polymerase III su 97.2 0.0048 1E-07 58.5 12.1 52 128-179 11-63 (509)
39 PLN03025 replication factor C 97.2 0.001 2.3E-08 59.3 7.1 50 129-178 9-58 (319)
40 PRK00440 rfc replication facto 97.2 0.0013 2.8E-08 58.3 7.6 49 130-178 14-62 (319)
41 KOG2004 Mitochondrial ATP-depe 97.2 0.0022 4.7E-08 61.6 8.9 65 132-201 410-480 (906)
42 PRK14964 DNA polymerase III su 97.2 0.0091 2E-07 56.1 13.1 49 129-177 9-58 (491)
43 TIGR02903 spore_lon_C ATP-depe 97.2 0.00069 1.5E-08 65.7 5.8 55 129-183 150-204 (615)
44 PRK14960 DNA polymerase III su 97.1 0.0059 1.3E-07 59.0 11.7 50 129-178 11-61 (702)
45 PRK07667 uridine kinase; Provi 97.1 0.0007 1.5E-08 55.9 4.7 38 142-179 3-42 (193)
46 PRK14957 DNA polymerase III su 97.1 0.0058 1.3E-07 58.2 11.3 50 129-178 12-62 (546)
47 COG3903 Predicted ATPase [Gene 97.1 0.0012 2.7E-08 59.5 6.3 121 153-276 13-198 (414)
48 PRK05896 DNA polymerase III su 97.1 0.0087 1.9E-07 57.4 12.3 50 129-178 12-62 (605)
49 PRK08691 DNA polymerase III su 97.1 0.0093 2E-07 58.0 12.5 50 128-177 11-61 (709)
50 PRK14949 DNA polymerase III su 97.1 0.0047 1E-07 61.5 10.6 51 129-179 12-63 (944)
51 CHL00095 clpC Clp protease ATP 97.1 0.0008 1.7E-08 67.5 5.4 48 132-179 178-225 (821)
52 PRK07764 DNA polymerase III su 97.1 0.0055 1.2E-07 61.2 11.1 51 129-179 11-62 (824)
53 PRK06547 hypothetical protein; 97.0 0.00099 2.2E-08 53.9 4.8 37 143-179 4-40 (172)
54 PF13238 AAA_18: AAA domain; P 97.0 0.00057 1.2E-08 51.9 3.2 21 157-177 1-21 (129)
55 KOG0991 Replication factor C, 97.0 0.00094 2E-08 56.0 4.6 78 128-205 22-99 (333)
56 COG1618 Predicted nucleotide k 97.0 0.00093 2E-08 52.8 4.3 36 154-190 5-40 (179)
57 PF00485 PRK: Phosphoribulokin 97.0 0.00057 1.2E-08 56.4 3.3 24 156-179 1-24 (194)
58 PRK05541 adenylylsulfate kinas 97.0 0.0011 2.5E-08 53.6 4.9 37 153-191 6-42 (176)
59 PRK14969 DNA polymerase III su 97.0 0.012 2.7E-07 56.0 12.5 50 129-178 12-62 (527)
60 PRK07994 DNA polymerase III su 97.0 0.0061 1.3E-07 59.1 10.4 51 129-179 12-63 (647)
61 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0011 2.5E-08 66.5 5.6 49 131-179 185-233 (852)
62 PRK04195 replication factor C 97.0 0.00059 1.3E-08 64.4 3.3 50 129-178 10-63 (482)
63 COG0466 Lon ATP-dependent Lon 97.0 0.0011 2.3E-08 63.8 4.9 47 133-179 323-375 (782)
64 TIGR02639 ClpA ATP-dependent C 97.0 0.0012 2.7E-08 65.4 5.6 48 131-178 180-227 (731)
65 PRK07940 DNA polymerase III su 96.9 0.017 3.7E-07 53.0 12.6 46 132-177 4-59 (394)
66 PRK09270 nucleoside triphospha 96.9 0.0014 3E-08 55.6 5.2 28 152-179 31-58 (229)
67 PRK15455 PrkA family serine pr 96.9 0.0012 2.7E-08 62.5 5.1 48 132-179 75-128 (644)
68 PRK05480 uridine/cytidine kina 96.9 0.00092 2E-08 55.8 3.8 28 151-178 3-30 (209)
69 PRK09111 DNA polymerase III su 96.9 0.0093 2E-07 57.6 11.1 50 129-178 20-70 (598)
70 PRK08233 hypothetical protein; 96.9 0.00084 1.8E-08 54.4 3.4 26 154-179 3-28 (182)
71 PRK14951 DNA polymerase III su 96.9 0.011 2.5E-07 57.1 11.5 50 129-178 12-62 (618)
72 COG2909 MalT ATP-dependent tra 96.9 0.033 7.2E-07 54.8 14.4 51 143-196 25-76 (894)
73 PF13173 AAA_14: AAA domain 96.9 0.0014 3E-08 50.2 4.3 39 154-195 2-40 (128)
74 PRK05642 DNA replication initi 96.9 0.055 1.2E-06 46.0 14.4 26 154-179 45-70 (234)
75 PF13671 AAA_33: AAA domain; P 96.9 0.001 2.3E-08 51.6 3.5 23 156-178 1-23 (143)
76 COG1222 RPT1 ATP-dependent 26S 96.8 0.018 3.8E-07 51.4 11.1 142 127-272 145-372 (406)
77 PRK10865 protein disaggregatio 96.8 0.0018 3.9E-08 65.2 5.6 49 131-179 176-224 (857)
78 TIGR00235 udk uridine kinase. 96.8 0.0011 2.3E-08 55.4 3.4 27 153-179 5-31 (207)
79 PRK06762 hypothetical protein; 96.8 0.0011 2.4E-08 53.1 3.4 25 154-178 2-26 (166)
80 PTZ00301 uridine kinase; Provi 96.8 0.0011 2.5E-08 55.4 3.5 25 154-178 3-27 (210)
81 PRK13341 recombination factor 96.8 0.0015 3.3E-08 64.3 4.8 51 129-179 24-77 (725)
82 PHA02544 44 clamp loader, smal 96.8 0.0017 3.7E-08 57.7 4.7 50 129-178 17-67 (316)
83 PRK06645 DNA polymerase III su 96.8 0.023 5E-07 53.8 12.4 51 129-179 17-68 (507)
84 PF01583 APS_kinase: Adenylyls 96.8 0.0023 5.1E-08 50.7 4.8 36 154-191 2-37 (156)
85 PHA00729 NTP-binding motif con 96.8 0.002 4.2E-08 54.3 4.6 36 143-178 6-41 (226)
86 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.6E-08 44.8 2.7 23 156-178 1-23 (69)
87 TIGR02237 recomb_radB DNA repa 96.7 0.0043 9.4E-08 51.6 6.3 49 153-204 11-59 (209)
88 PF00158 Sigma54_activat: Sigm 96.7 0.012 2.6E-07 47.4 8.6 42 136-178 2-46 (168)
89 PRK08903 DnaA regulatory inact 96.7 0.0043 9.4E-08 52.4 6.4 38 141-178 28-66 (227)
90 TIGR01242 26Sp45 26S proteasom 96.7 0.002 4.4E-08 58.5 4.6 49 130-178 119-180 (364)
91 PRK14971 DNA polymerase III su 96.7 0.033 7.2E-07 54.1 13.1 50 129-178 13-63 (614)
92 cd01133 F1-ATPase_beta F1 ATP 96.7 0.014 3E-07 50.6 9.4 66 152-219 67-141 (274)
93 PRK03992 proteasome-activating 96.7 0.0018 3.9E-08 59.4 4.1 49 131-179 129-190 (389)
94 COG1474 CDC6 Cdc6-related prot 96.7 0.0091 2E-07 54.2 8.4 71 135-205 19-93 (366)
95 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0029 6.3E-08 63.8 5.7 49 131-179 171-219 (852)
96 PRK10536 hypothetical protein; 96.6 0.013 2.8E-07 50.3 8.7 58 130-189 52-109 (262)
97 PRK03839 putative kinase; Prov 96.6 0.0017 3.7E-08 52.8 3.1 24 156-179 2-25 (180)
98 PRK14963 DNA polymerase III su 96.6 0.0021 4.4E-08 60.9 4.1 51 129-179 10-61 (504)
99 COG2256 MGS1 ATPase related to 96.6 0.0024 5.2E-08 57.5 4.1 51 129-179 20-73 (436)
100 PRK14962 DNA polymerase III su 96.6 0.0032 7E-08 59.1 5.1 50 129-178 10-60 (472)
101 PRK14952 DNA polymerase III su 96.6 0.028 6E-07 54.1 11.4 51 129-179 9-60 (584)
102 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0021 4.6E-08 52.3 3.4 26 153-178 2-27 (188)
103 TIGR00554 panK_bact pantothena 96.5 0.0097 2.1E-07 52.2 7.6 28 151-178 59-86 (290)
104 smart00382 AAA ATPases associa 96.5 0.0021 4.5E-08 48.8 3.1 38 154-193 2-39 (148)
105 PRK14961 DNA polymerase III su 96.5 0.0038 8.3E-08 56.7 5.2 50 129-178 12-62 (363)
106 KOG1532 GTPase XAB1, interacts 96.5 0.0034 7.4E-08 53.8 4.4 29 153-181 18-46 (366)
107 PRK14965 DNA polymerase III su 96.5 0.065 1.4E-06 51.8 13.8 50 129-178 12-62 (576)
108 PRK14955 DNA polymerase III su 96.5 0.0036 7.7E-08 57.6 4.8 51 129-179 12-63 (397)
109 PTZ00112 origin recognition co 96.5 0.013 2.9E-07 58.2 8.7 47 133-179 755-806 (1164)
110 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0066 1.4E-07 51.4 6.1 51 153-203 18-72 (235)
111 PF00004 AAA: ATPase family as 96.5 0.0024 5.2E-08 48.6 3.0 23 157-179 1-23 (132)
112 PRK14950 DNA polymerase III su 96.5 0.061 1.3E-06 52.1 13.3 50 129-178 12-62 (585)
113 PRK00131 aroK shikimate kinase 96.5 0.0027 5.9E-08 50.9 3.5 27 153-179 3-29 (175)
114 PF03308 ArgK: ArgK protein; 96.5 0.0075 1.6E-07 51.6 6.1 60 141-200 14-75 (266)
115 cd02023 UMPK Uridine monophosp 96.4 0.002 4.4E-08 53.2 2.6 23 156-178 1-23 (198)
116 PF07728 AAA_5: AAA domain (dy 96.4 0.0099 2.1E-07 46.0 6.3 44 157-205 2-45 (139)
117 TIGR02881 spore_V_K stage V sp 96.4 0.0045 9.8E-08 53.5 4.7 25 153-177 41-65 (261)
118 cd02025 PanK Pantothenate kina 96.4 0.0021 4.5E-08 54.2 2.5 24 156-179 1-24 (220)
119 PRK04040 adenylate kinase; Pro 96.4 0.0031 6.8E-08 51.8 3.5 25 154-178 2-26 (188)
120 PRK11034 clpA ATP-dependent Cl 96.4 0.0044 9.5E-08 61.4 4.9 47 132-178 185-231 (758)
121 COG3640 CooC CO dehydrogenase 96.4 0.0079 1.7E-07 50.5 5.6 44 156-200 2-45 (255)
122 PF00308 Bac_DnaA: Bacterial d 96.4 0.085 1.8E-06 44.4 12.1 39 153-191 33-71 (219)
123 TIGR02322 phosphon_PhnN phosph 96.4 0.003 6.5E-08 51.2 3.1 24 155-178 2-25 (179)
124 PRK14959 DNA polymerase III su 96.4 0.062 1.4E-06 51.9 12.4 51 129-179 12-63 (624)
125 PRK00625 shikimate kinase; Pro 96.4 0.0029 6.2E-08 51.3 2.9 24 156-179 2-25 (173)
126 COG0572 Udk Uridine kinase [Nu 96.4 0.0034 7.5E-08 52.3 3.5 27 153-179 7-33 (218)
127 cd02024 NRK1 Nicotinamide ribo 96.3 0.0026 5.7E-08 52.1 2.7 23 156-178 1-23 (187)
128 PRK06217 hypothetical protein; 96.3 0.0029 6.3E-08 51.6 2.9 35 156-191 3-39 (183)
129 cd00227 CPT Chloramphenicol (C 96.3 0.0035 7.7E-08 50.7 3.3 25 154-178 2-26 (175)
130 PRK14956 DNA polymerase III su 96.3 0.0046 1E-07 57.7 4.4 51 129-179 14-65 (484)
131 PRK06851 hypothetical protein; 96.3 0.065 1.4E-06 48.6 11.6 56 137-197 201-256 (367)
132 PF03205 MobB: Molybdopterin g 96.3 0.0046 1E-07 48.3 3.8 39 155-194 1-39 (140)
133 PF05673 DUF815: Protein of un 96.3 0.018 3.9E-07 48.9 7.5 50 130-179 24-77 (249)
134 PRK00889 adenylylsulfate kinas 96.3 0.0043 9.3E-08 50.1 3.6 27 153-179 3-29 (175)
135 PF02562 PhoH: PhoH-like prote 96.3 0.0077 1.7E-07 50.0 5.0 53 137-191 4-56 (205)
136 TIGR00763 lon ATP-dependent pr 96.3 0.0097 2.1E-07 59.5 6.7 46 134-179 321-372 (775)
137 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0031 6.8E-08 51.2 2.7 23 156-178 1-23 (183)
138 cd02021 GntK Gluconate kinase 96.3 0.0032 7E-08 49.4 2.7 23 156-178 1-23 (150)
139 cd02028 UMPK_like Uridine mono 96.3 0.0031 6.8E-08 51.4 2.7 24 156-179 1-24 (179)
140 PRK14953 DNA polymerase III su 96.3 0.086 1.9E-06 49.8 12.6 50 129-178 12-62 (486)
141 PRK10463 hydrogenase nickel in 96.2 0.012 2.5E-07 51.5 6.2 37 143-179 93-129 (290)
142 PRK09361 radB DNA repair and r 96.2 0.012 2.6E-07 49.6 6.2 46 153-201 22-67 (225)
143 COG0467 RAD55 RecA-superfamily 96.2 0.0074 1.6E-07 52.1 5.1 43 152-196 21-63 (260)
144 cd02020 CMPK Cytidine monophos 96.2 0.0034 7.5E-08 48.8 2.7 24 156-179 1-24 (147)
145 cd01393 recA_like RecA is a b 96.2 0.012 2.6E-07 49.5 6.1 49 153-203 18-72 (226)
146 COG1428 Deoxynucleoside kinase 96.2 0.0039 8.5E-08 51.5 3.0 26 154-179 4-29 (216)
147 COG1703 ArgK Putative periplas 96.2 0.0085 1.8E-07 52.1 5.2 60 143-202 38-99 (323)
148 cd01120 RecA-like_NTPases RecA 96.2 0.007 1.5E-07 47.5 4.5 40 156-197 1-40 (165)
149 PF05621 TniB: Bacterial TniB 96.2 0.22 4.7E-06 43.8 13.9 66 140-205 44-116 (302)
150 PRK10751 molybdopterin-guanine 96.2 0.0052 1.1E-07 49.7 3.6 27 153-179 5-31 (173)
151 PF00625 Guanylate_kin: Guanyl 96.2 0.0071 1.5E-07 49.3 4.3 37 154-192 2-38 (183)
152 PF04665 Pox_A32: Poxvirus A32 96.2 0.0075 1.6E-07 51.3 4.5 36 155-192 14-49 (241)
153 TIGR03263 guanyl_kin guanylate 96.1 0.004 8.6E-08 50.5 2.8 23 155-177 2-24 (180)
154 PTZ00361 26 proteosome regulat 96.1 0.0083 1.8E-07 55.7 5.1 49 131-179 181-242 (438)
155 PRK00300 gmk guanylate kinase; 96.1 0.005 1.1E-07 51.0 3.4 26 153-178 4-29 (205)
156 COG1102 Cmk Cytidylate kinase 96.1 0.0046 9.9E-08 48.9 2.8 24 156-179 2-25 (179)
157 PRK14970 DNA polymerase III su 96.1 0.0087 1.9E-07 54.4 5.1 50 129-178 13-63 (367)
158 PF00910 RNA_helicase: RNA hel 96.1 0.0041 8.8E-08 46.1 2.4 23 157-179 1-23 (107)
159 TIGR03689 pup_AAA proteasome A 96.1 0.012 2.6E-07 55.6 6.0 52 128-179 177-241 (512)
160 PRK09112 DNA polymerase III su 96.1 0.013 2.8E-07 52.9 6.0 51 129-179 19-70 (351)
161 TIGR02902 spore_lonB ATP-depen 96.1 0.012 2.7E-07 56.1 6.1 48 130-177 62-109 (531)
162 PRK13947 shikimate kinase; Pro 96.1 0.0048 1E-07 49.5 2.9 24 156-179 3-26 (171)
163 PF13604 AAA_30: AAA domain; P 96.1 0.015 3.2E-07 48.1 5.9 39 142-180 6-44 (196)
164 TIGR00073 hypB hydrogenase acc 96.1 0.0065 1.4E-07 50.6 3.8 34 146-179 14-47 (207)
165 PTZ00454 26S protease regulato 96.1 0.0091 2E-07 54.9 5.0 51 128-178 140-203 (398)
166 COG0003 ArsA Predicted ATPase 96.0 0.014 3E-07 51.9 5.9 49 154-204 2-50 (322)
167 COG1419 FlhF Flagellar GTP-bin 96.0 0.0095 2.1E-07 54.1 4.8 53 139-192 184-241 (407)
168 TIGR00176 mobB molybdopterin-g 96.0 0.0095 2.1E-07 47.3 4.4 35 156-191 1-35 (155)
169 PRK08116 hypothetical protein; 96.0 0.014 3.1E-07 50.7 5.7 37 155-193 115-151 (268)
170 PRK14527 adenylate kinase; Pro 96.0 0.0069 1.5E-07 49.7 3.6 28 152-179 4-31 (191)
171 PRK13949 shikimate kinase; Pro 96.0 0.0054 1.2E-07 49.5 2.9 25 155-179 2-26 (169)
172 PRK03846 adenylylsulfate kinas 96.0 0.0066 1.4E-07 50.2 3.5 28 152-179 22-49 (198)
173 PRK08181 transposase; Validate 96.0 0.017 3.6E-07 50.3 6.1 42 147-192 101-142 (269)
174 PF00448 SRP54: SRP54-type pro 96.0 0.015 3.1E-07 48.2 5.5 38 154-193 1-38 (196)
175 PRK14530 adenylate kinase; Pro 96.0 0.006 1.3E-07 51.1 3.2 25 155-179 4-28 (215)
176 cd00464 SK Shikimate kinase (S 96.0 0.006 1.3E-07 47.9 3.0 23 157-179 2-24 (154)
177 CHL00181 cbbX CbbX; Provisiona 96.0 0.019 4E-07 50.5 6.3 25 154-178 59-83 (287)
178 PRK14954 DNA polymerase III su 96.0 0.0089 1.9E-07 57.9 4.6 51 129-179 12-63 (620)
179 COG0563 Adk Adenylate kinase a 96.0 0.0059 1.3E-07 49.7 2.9 24 156-179 2-25 (178)
180 PRK13695 putative NTPase; Prov 96.0 0.011 2.3E-07 47.8 4.5 35 156-191 2-36 (174)
181 PRK13975 thymidylate kinase; P 95.9 0.007 1.5E-07 49.7 3.3 25 155-179 3-27 (196)
182 TIGR02397 dnaX_nterm DNA polym 95.9 0.012 2.7E-07 53.0 5.1 50 129-178 10-60 (355)
183 TIGR01313 therm_gnt_kin carboh 95.9 0.0052 1.1E-07 49.0 2.4 22 157-178 1-22 (163)
184 COG0194 Gmk Guanylate kinase [ 95.9 0.0092 2E-07 48.4 3.7 25 154-178 4-28 (191)
185 PF08477 Miro: Miro-like prote 95.9 0.0062 1.4E-07 45.5 2.7 24 157-180 2-25 (119)
186 COG0529 CysC Adenylylsulfate k 95.9 0.016 3.5E-07 46.6 5.0 34 147-180 16-49 (197)
187 cd01394 radB RadB. The archaea 95.9 0.02 4.2E-07 48.0 5.9 43 153-197 18-60 (218)
188 KOG2543 Origin recognition com 95.9 0.03 6.5E-07 50.3 7.1 67 134-205 7-76 (438)
189 cd00071 GMPK Guanosine monopho 95.9 0.0061 1.3E-07 47.4 2.5 23 156-178 1-23 (137)
190 PRK05057 aroK shikimate kinase 95.9 0.008 1.7E-07 48.6 3.3 25 154-178 4-28 (172)
191 PF03193 DUF258: Protein of un 95.9 0.011 2.5E-07 47.1 4.1 34 142-178 26-59 (161)
192 PRK10078 ribose 1,5-bisphospho 95.9 0.0066 1.4E-07 49.7 2.8 24 155-178 3-26 (186)
193 TIGR01287 nifH nitrogenase iro 95.8 0.0079 1.7E-07 52.3 3.4 26 155-180 1-26 (275)
194 PRK12339 2-phosphoglycerate ki 95.8 0.0086 1.9E-07 49.6 3.4 25 154-178 3-27 (197)
195 COG1126 GlnQ ABC-type polar am 95.8 0.0089 1.9E-07 49.7 3.4 37 153-192 27-63 (240)
196 PF03215 Rad17: Rad17 cell cyc 95.8 0.013 2.9E-07 55.5 5.1 55 132-190 18-77 (519)
197 CHL00081 chlI Mg-protoporyphyr 95.8 0.013 2.8E-07 52.8 4.7 50 129-178 13-62 (350)
198 TIGR00150 HI0065_YjeE ATPase, 95.8 0.016 3.5E-07 44.7 4.6 40 141-180 7-48 (133)
199 PRK04301 radA DNA repair and r 95.8 0.023 4.9E-07 50.7 6.3 53 153-205 101-157 (317)
200 TIGR00678 holB DNA polymerase 95.8 0.06 1.3E-06 44.0 8.3 36 144-179 3-39 (188)
201 TIGR02030 BchI-ChlI magnesium 95.8 0.017 3.7E-07 51.9 5.3 46 132-177 3-48 (337)
202 cd02027 APSK Adenosine 5'-phos 95.8 0.0071 1.5E-07 47.7 2.6 24 156-179 1-24 (149)
203 PRK14737 gmk guanylate kinase; 95.8 0.0088 1.9E-07 49.0 3.2 26 153-178 3-28 (186)
204 TIGR02236 recomb_radA DNA repa 95.8 0.026 5.6E-07 50.1 6.4 53 153-205 94-150 (310)
205 PRK08451 DNA polymerase III su 95.8 0.12 2.5E-06 49.3 11.0 50 129-178 10-60 (535)
206 PRK04182 cytidylate kinase; Pr 95.7 0.0088 1.9E-07 48.2 3.1 24 156-179 2-25 (180)
207 PF13086 AAA_11: AAA domain; P 95.7 0.03 6.5E-07 46.7 6.5 50 156-205 19-73 (236)
208 COG1763 MobB Molybdopterin-gua 95.7 0.011 2.5E-07 47.0 3.6 28 154-181 2-29 (161)
209 PRK05439 pantothenate kinase; 95.7 0.044 9.6E-07 48.5 7.7 27 152-178 84-110 (311)
210 PRK13531 regulatory ATPase Rav 95.7 0.018 4E-07 53.8 5.5 44 134-179 21-64 (498)
211 TIGR00750 lao LAO/AO transport 95.7 0.022 4.8E-07 50.3 5.8 38 142-179 20-59 (300)
212 PRK12608 transcription termina 95.7 0.048 1E-06 49.4 7.9 74 142-216 120-196 (380)
213 PF03029 ATP_bind_1: Conserved 95.7 0.015 3.2E-07 49.7 4.5 33 159-193 1-33 (238)
214 PLN02165 adenylate isopentenyl 95.7 0.012 2.7E-07 52.3 4.1 31 148-178 37-67 (334)
215 TIGR03499 FlhF flagellar biosy 95.7 0.015 3.3E-07 50.9 4.6 27 153-179 193-219 (282)
216 cd01131 PilT Pilus retraction 95.7 0.015 3.4E-07 48.0 4.4 25 155-179 2-26 (198)
217 TIGR01241 FtsH_fam ATP-depende 95.7 0.017 3.6E-07 54.8 5.2 51 128-178 50-112 (495)
218 PF01695 IstB_IS21: IstB-like 95.7 0.074 1.6E-06 43.3 8.3 38 153-192 46-83 (178)
219 PF13245 AAA_19: Part of AAA d 95.7 0.033 7.1E-07 38.6 5.3 26 153-178 9-35 (76)
220 PRK09435 membrane ATPase/prote 95.7 0.037 7.9E-07 49.6 6.9 38 142-179 42-81 (332)
221 PRK07471 DNA polymerase III su 95.6 0.018 3.9E-07 52.4 5.0 50 129-178 15-65 (365)
222 PRK13948 shikimate kinase; Pro 95.6 0.012 2.7E-07 48.0 3.6 28 152-179 8-35 (182)
223 PRK14738 gmk guanylate kinase; 95.6 0.011 2.3E-07 49.3 3.3 25 153-177 12-36 (206)
224 PLN02348 phosphoribulokinase 95.6 0.022 4.8E-07 51.8 5.5 37 143-179 37-74 (395)
225 COG1124 DppF ABC-type dipeptid 95.6 0.014 3E-07 49.3 3.8 27 153-179 32-58 (252)
226 PRK13946 shikimate kinase; Pro 95.6 0.01 2.3E-07 48.4 3.0 26 154-179 10-35 (184)
227 cd00820 PEPCK_HprK Phosphoenol 95.6 0.012 2.7E-07 43.5 3.1 22 154-175 15-36 (107)
228 TIGR02173 cyt_kin_arch cytidyl 95.6 0.012 2.5E-07 47.1 3.1 23 156-178 2-24 (171)
229 COG1100 GTPase SAR1 and relate 95.6 0.0086 1.9E-07 49.9 2.5 25 155-179 6-30 (219)
230 PRK05537 bifunctional sulfate 95.5 0.024 5.2E-07 54.6 5.7 47 133-179 369-417 (568)
231 PRK14493 putative bifunctional 95.5 0.013 2.8E-07 51.1 3.5 27 155-181 2-28 (274)
232 PF13521 AAA_28: AAA domain; P 95.5 0.012 2.5E-07 47.0 3.0 21 157-177 2-22 (163)
233 cd02117 NifH_like This family 95.5 0.011 2.4E-07 49.4 3.0 25 155-179 1-25 (212)
234 TIGR03574 selen_PSTK L-seryl-t 95.5 0.01 2.2E-07 51.0 2.7 24 156-179 1-24 (249)
235 cd01672 TMPK Thymidine monopho 95.5 0.012 2.6E-07 48.1 3.2 24 156-179 2-25 (200)
236 PRK13236 nitrogenase reductase 95.5 0.016 3.4E-07 51.2 4.0 30 151-180 3-32 (296)
237 PLN02200 adenylate kinase fami 95.5 0.013 2.9E-07 49.8 3.5 26 153-178 42-67 (234)
238 PRK13407 bchI magnesium chelat 95.5 0.018 3.9E-07 51.6 4.4 49 130-178 5-53 (334)
239 PRK09825 idnK D-gluconate kina 95.5 0.013 2.9E-07 47.5 3.2 25 155-179 4-28 (176)
240 cd01124 KaiC KaiC is a circadi 95.5 0.021 4.6E-07 46.3 4.5 37 157-195 2-38 (187)
241 TIGR00064 ftsY signal recognit 95.5 0.029 6.2E-07 48.9 5.5 40 152-193 70-109 (272)
242 KOG0733 Nuclear AAA ATPase (VC 95.4 0.02 4.3E-07 54.4 4.5 49 132-180 189-249 (802)
243 PF03266 NTPase_1: NTPase; In 95.4 0.013 2.8E-07 47.2 3.0 23 157-179 2-24 (168)
244 PRK14722 flhF flagellar biosyn 95.4 0.028 6E-07 51.1 5.4 40 153-192 136-175 (374)
245 TIGR02012 tigrfam_recA protein 95.4 0.025 5.5E-07 50.3 5.1 44 153-198 54-97 (321)
246 PF00005 ABC_tran: ABC transpo 95.4 0.015 3.2E-07 44.8 3.2 35 154-191 11-45 (137)
247 PRK14948 DNA polymerase III su 95.4 0.089 1.9E-06 51.2 9.2 50 130-179 13-63 (620)
248 TIGR02880 cbbX_cfxQ probable R 95.4 0.042 9E-07 48.2 6.4 24 155-178 59-82 (284)
249 PRK08356 hypothetical protein; 95.4 0.015 3.2E-07 48.0 3.4 22 154-175 5-26 (195)
250 cd01428 ADK Adenylate kinase ( 95.4 0.012 2.7E-07 48.0 2.9 22 157-178 2-23 (194)
251 TIGR00602 rad24 checkpoint pro 95.4 0.022 4.8E-07 55.3 5.0 51 128-178 79-134 (637)
252 cd00983 recA RecA is a bacter 95.4 0.025 5.4E-07 50.4 4.9 45 153-199 54-98 (325)
253 PRK13230 nitrogenase reductase 95.4 0.016 3.4E-07 50.6 3.7 25 155-179 2-26 (279)
254 cd02040 NifH NifH gene encodes 95.4 0.016 3.5E-07 50.1 3.7 25 155-179 2-26 (270)
255 PRK15453 phosphoribulokinase; 95.4 0.016 3.5E-07 50.4 3.6 28 151-178 2-29 (290)
256 PRK14087 dnaA chromosomal repl 95.4 0.16 3.5E-06 47.6 10.5 26 154-179 141-166 (450)
257 KOG0731 AAA+-type ATPase conta 95.4 0.11 2.3E-06 51.2 9.4 49 131-179 309-369 (774)
258 COG1136 SalX ABC-type antimicr 95.4 0.013 2.8E-07 49.4 2.9 36 153-191 30-65 (226)
259 PF01926 MMR_HSR1: 50S ribosom 95.4 0.014 3E-07 43.6 2.9 21 157-177 2-22 (116)
260 cd04139 RalA_RalB RalA/RalB su 95.4 0.012 2.5E-07 46.4 2.5 23 156-178 2-24 (164)
261 PRK06761 hypothetical protein; 95.4 0.03 6.6E-07 48.9 5.3 25 155-179 4-28 (282)
262 COG2019 AdkA Archaeal adenylat 95.4 0.014 3E-07 46.5 2.8 25 154-178 4-28 (189)
263 KOG0744 AAA+-type ATPase [Post 95.4 0.013 2.8E-07 51.6 2.9 28 154-181 177-204 (423)
264 PLN02796 D-glycerate 3-kinase 95.3 0.014 3E-07 52.3 3.0 27 153-179 99-125 (347)
265 PRK14532 adenylate kinase; Pro 95.3 0.014 3E-07 47.7 2.9 22 157-178 3-24 (188)
266 PRK03731 aroL shikimate kinase 95.3 0.015 3.4E-07 46.6 3.1 25 155-179 3-27 (171)
267 COG1936 Predicted nucleotide k 95.3 0.013 2.8E-07 46.9 2.5 20 156-175 2-21 (180)
268 PLN02924 thymidylate kinase 95.3 0.076 1.7E-06 44.7 7.4 33 153-186 15-47 (220)
269 PF07726 AAA_3: ATPase family 95.3 0.012 2.6E-07 45.0 2.2 26 157-184 2-27 (131)
270 PRK08099 bifunctional DNA-bind 95.3 0.015 3.2E-07 53.5 3.2 28 151-178 216-243 (399)
271 PF02374 ArsA_ATPase: Anion-tr 95.3 0.034 7.4E-07 49.3 5.4 47 155-203 2-48 (305)
272 cd03116 MobB Molybdenum is an 95.3 0.028 6E-07 44.9 4.4 25 155-179 2-26 (159)
273 PRK13232 nifH nitrogenase redu 95.3 0.018 3.9E-07 50.1 3.5 25 155-179 2-26 (273)
274 PRK14531 adenylate kinase; Pro 95.3 0.017 3.6E-07 47.1 3.2 25 155-179 3-27 (183)
275 PRK11889 flhF flagellar biosyn 95.3 0.031 6.7E-07 51.0 5.0 27 153-179 240-266 (436)
276 PRK12597 F0F1 ATP synthase sub 95.3 0.15 3.2E-06 47.7 9.7 67 152-219 141-215 (461)
277 TIGR00041 DTMP_kinase thymidyl 95.2 0.057 1.2E-06 44.2 6.4 26 155-180 4-29 (195)
278 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.032 7E-07 49.9 5.1 46 134-179 62-113 (358)
279 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.017 3.7E-07 41.0 2.9 25 156-180 1-25 (99)
280 cd01130 VirB11-like_ATPase Typ 95.2 0.025 5.4E-07 46.2 4.1 38 140-178 12-49 (186)
281 TIGR00390 hslU ATP-dependent p 95.2 0.053 1.1E-06 49.9 6.4 45 135-179 14-72 (441)
282 PRK06305 DNA polymerase III su 95.2 0.03 6.4E-07 52.4 5.0 50 129-178 13-63 (451)
283 PRK13233 nifH nitrogenase redu 95.2 0.027 5.8E-07 49.0 4.5 25 155-179 3-27 (275)
284 smart00072 GuKc Guanylate kina 95.2 0.02 4.3E-07 46.7 3.5 25 154-178 2-26 (184)
285 PHA02530 pseT polynucleotide k 95.2 0.017 3.7E-07 50.8 3.3 24 155-178 3-26 (300)
286 COG3899 Predicted ATPase [Gene 95.2 0.038 8.3E-07 55.7 6.1 45 135-179 2-49 (849)
287 COG0703 AroK Shikimate kinase 95.2 0.018 4E-07 46.2 3.1 25 155-179 3-27 (172)
288 cd01858 NGP_1 NGP-1. Autoanti 95.2 0.033 7.2E-07 44.1 4.6 43 137-179 82-127 (157)
289 PLN02318 phosphoribulokinase/u 95.2 0.022 4.8E-07 54.4 4.1 28 151-178 62-89 (656)
290 PF05659 RPW8: Arabidopsis bro 95.2 0.21 4.6E-06 39.2 9.0 98 2-106 3-113 (147)
291 PF08423 Rad51: Rad51; InterP 95.2 0.059 1.3E-06 46.5 6.4 51 154-204 38-92 (256)
292 TIGR02640 gas_vesic_GvpN gas v 95.2 0.078 1.7E-06 45.9 7.2 36 140-177 9-44 (262)
293 PRK06620 hypothetical protein; 95.2 0.016 3.5E-07 48.6 2.8 24 155-178 45-68 (214)
294 COG0468 RecA RecA/RadA recombi 95.2 0.055 1.2E-06 47.1 6.2 51 153-205 59-109 (279)
295 PRK12377 putative replication 95.2 0.043 9.2E-07 47.1 5.5 39 153-193 100-138 (248)
296 TIGR00231 small_GTP small GTP- 95.2 0.014 3E-07 45.0 2.3 23 156-178 3-25 (161)
297 COG0470 HolB ATPase involved i 95.2 0.13 2.8E-06 45.5 8.8 45 135-179 3-49 (325)
298 PTZ00088 adenylate kinase 1; P 95.1 0.017 3.7E-07 49.0 2.9 24 156-179 8-31 (229)
299 cd03225 ABC_cobalt_CbiO_domain 95.1 0.019 4.1E-07 47.8 3.2 26 153-178 26-51 (211)
300 PRK13768 GTPase; Provisional 95.1 0.039 8.4E-07 47.6 5.1 25 155-179 3-27 (253)
301 PRK00698 tmk thymidylate kinas 95.1 0.021 4.6E-07 47.1 3.5 26 154-179 3-28 (205)
302 cd02022 DPCK Dephospho-coenzym 95.1 0.016 3.4E-07 47.1 2.6 21 156-176 1-21 (179)
303 PRK10416 signal recognition pa 95.1 0.026 5.7E-07 50.3 4.2 27 153-179 113-139 (318)
304 PRK10787 DNA-binding ATP-depen 95.1 0.029 6.3E-07 56.0 4.9 46 133-178 322-373 (784)
305 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.019 4.2E-07 48.0 3.2 35 153-190 29-63 (218)
306 smart00173 RAS Ras subfamily o 95.1 0.017 3.6E-07 45.7 2.6 23 156-178 2-24 (164)
307 cd04163 Era Era subfamily. Er 95.1 0.017 3.7E-07 45.1 2.7 24 154-177 3-26 (168)
308 TIGR02238 recomb_DMC1 meiotic 95.1 0.048 1E-06 48.5 5.8 53 153-205 95-151 (313)
309 cd01862 Rab7 Rab7 subfamily. 95.1 0.015 3.3E-07 46.2 2.4 22 156-177 2-23 (172)
310 COG0237 CoaE Dephospho-CoA kin 95.1 0.021 4.6E-07 47.4 3.3 23 154-176 2-24 (201)
311 smart00178 SAR Sar1p-like memb 95.1 0.032 7E-07 45.4 4.4 36 142-177 4-40 (184)
312 PRK08154 anaerobic benzoate ca 95.1 0.035 7.5E-07 49.3 4.9 26 153-178 132-157 (309)
313 cd04119 RJL RJL (RabJ-Like) su 95.1 0.017 3.6E-07 45.6 2.6 23 156-178 2-24 (168)
314 TIGR00960 3a0501s02 Type II (G 95.1 0.019 4.2E-07 48.0 3.1 36 153-191 28-63 (216)
315 COG1116 TauB ABC-type nitrate/ 95.1 0.018 3.9E-07 48.8 2.8 26 153-178 28-53 (248)
316 PLN03187 meiotic recombination 95.1 0.053 1.1E-06 48.8 5.9 53 153-205 125-181 (344)
317 PF13177 DNA_pol3_delta2: DNA 95.0 0.23 5E-06 39.7 9.1 42 137-178 1-43 (162)
318 TIGR01166 cbiO cobalt transpor 95.0 0.02 4.4E-07 46.8 3.1 35 153-190 17-51 (190)
319 KOG3308 Uncharacterized protei 95.0 0.02 4.3E-07 47.0 2.9 24 154-177 4-27 (225)
320 PRK14490 putative bifunctional 95.0 0.041 9E-07 50.1 5.4 27 153-179 4-30 (369)
321 cd01129 PulE-GspE PulE/GspE Th 95.0 0.031 6.8E-07 48.5 4.4 41 137-177 63-103 (264)
322 TIGR00455 apsK adenylylsulfate 95.0 0.025 5.3E-07 46.1 3.5 28 152-179 16-43 (184)
323 PRK09354 recA recombinase A; P 95.0 0.042 9.2E-07 49.4 5.2 45 153-199 59-103 (349)
324 cd03114 ArgK-like The function 95.0 0.023 5E-07 44.7 3.2 24 156-179 1-24 (148)
325 TIGR01243 CDC48 AAA family ATP 95.0 0.027 5.9E-07 56.0 4.4 48 131-178 176-236 (733)
326 cd00879 Sar1 Sar1 subfamily. 95.0 0.029 6.2E-07 45.7 3.8 26 152-177 17-42 (190)
327 PRK01184 hypothetical protein; 95.0 0.019 4.1E-07 46.7 2.7 18 155-172 2-19 (184)
328 cd04138 H_N_K_Ras_like H-Ras/N 95.0 0.018 3.9E-07 45.1 2.6 23 156-178 3-25 (162)
329 PRK13235 nifH nitrogenase redu 95.0 0.02 4.3E-07 49.9 3.0 25 155-179 2-26 (274)
330 cd04113 Rab4 Rab4 subfamily. 95.0 0.018 4E-07 45.3 2.6 23 156-178 2-24 (161)
331 PF10662 PduV-EutP: Ethanolami 95.0 0.02 4.3E-07 44.7 2.6 24 155-178 2-25 (143)
332 cd03238 ABC_UvrA The excision 95.0 0.022 4.8E-07 46.2 3.0 24 153-176 20-43 (176)
333 COG4240 Predicted kinase [Gene 95.0 0.038 8.2E-07 46.3 4.3 41 151-192 47-87 (300)
334 cd04155 Arl3 Arl3 subfamily. 95.0 0.033 7.2E-07 44.4 4.0 25 153-177 13-37 (173)
335 cd03229 ABC_Class3 This class 94.9 0.024 5.1E-07 46.0 3.2 35 153-190 25-59 (178)
336 cd03269 ABC_putative_ATPase Th 94.9 0.023 5E-07 47.3 3.2 36 153-191 25-60 (210)
337 cd03222 ABC_RNaseL_inhibitor T 94.9 0.025 5.5E-07 45.9 3.2 27 153-179 24-50 (177)
338 PF06309 Torsin: Torsin; Inte 94.9 0.064 1.4E-06 40.8 5.2 44 135-178 27-77 (127)
339 PF08433 KTI12: Chromatin asso 94.9 0.024 5.3E-07 49.3 3.3 25 155-179 2-26 (270)
340 TIGR01281 DPOR_bchL light-inde 94.9 0.026 5.7E-07 48.8 3.5 24 156-179 2-25 (268)
341 PRK12724 flagellar biosynthesi 94.9 0.036 7.8E-07 51.0 4.5 25 154-178 223-247 (432)
342 cd03259 ABC_Carb_Solutes_like 94.9 0.024 5.2E-07 47.3 3.2 26 153-178 25-50 (213)
343 cd04159 Arl10_like Arl10-like 94.9 0.018 3.8E-07 44.8 2.2 21 157-177 2-22 (159)
344 COG0125 Tmk Thymidylate kinase 94.9 0.12 2.7E-06 43.1 7.3 28 154-181 3-30 (208)
345 cd03263 ABC_subfamily_A The AB 94.9 0.024 5.2E-07 47.5 3.2 35 153-190 27-61 (220)
346 cd01673 dNK Deoxyribonucleosid 94.9 0.021 4.6E-07 46.8 2.7 23 156-178 1-23 (193)
347 TIGR01351 adk adenylate kinase 94.9 0.022 4.9E-07 47.5 2.9 22 157-178 2-23 (210)
348 cd00154 Rab Rab family. Rab G 94.9 0.021 4.6E-07 44.2 2.6 22 157-178 3-24 (159)
349 cd03261 ABC_Org_Solvent_Resist 94.9 0.024 5.2E-07 48.1 3.1 26 153-178 25-50 (235)
350 cd02032 Bchl_like This family 94.9 0.028 6E-07 48.7 3.6 24 156-179 2-25 (267)
351 KOG0727 26S proteasome regulat 94.9 0.058 1.3E-06 46.0 5.3 49 131-179 153-214 (408)
352 PF00142 Fer4_NifH: 4Fe-4S iro 94.9 0.063 1.4E-06 46.1 5.6 36 155-192 1-36 (273)
353 cd03297 ABC_ModC_molybdenum_tr 94.9 0.024 5.2E-07 47.3 3.1 33 155-190 24-56 (214)
354 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.8 0.039 8.5E-07 44.3 4.2 34 144-177 5-38 (174)
355 TIGR02016 BchX chlorophyllide 94.8 0.048 1E-06 48.1 5.0 26 155-180 1-26 (296)
356 TIGR02673 FtsE cell division A 94.8 0.025 5.4E-07 47.2 3.1 36 153-191 27-62 (214)
357 cd03292 ABC_FtsE_transporter F 94.8 0.025 5.5E-07 47.1 3.1 35 153-190 26-60 (214)
358 cd03293 ABC_NrtD_SsuB_transpor 94.8 0.024 5.2E-07 47.6 3.0 26 153-178 29-54 (220)
359 PRK13541 cytochrome c biogenes 94.8 0.026 5.7E-07 46.4 3.1 27 153-179 25-51 (195)
360 TIGR02315 ABC_phnC phosphonate 94.8 0.025 5.5E-07 48.1 3.1 35 153-190 27-61 (243)
361 PRK05707 DNA polymerase III su 94.8 0.75 1.6E-05 41.2 12.6 27 153-179 21-47 (328)
362 TIGR00017 cmk cytidylate kinas 94.8 0.027 5.8E-07 47.4 3.2 25 155-179 3-27 (217)
363 cd02026 PRK Phosphoribulokinas 94.8 0.021 4.5E-07 49.8 2.6 23 156-178 1-23 (273)
364 COG0542 clpA ATP-binding subun 94.8 0.04 8.7E-07 54.3 4.7 48 132-179 169-216 (786)
365 cd03256 ABC_PhnC_transporter A 94.8 0.026 5.6E-07 48.0 3.1 26 153-178 26-51 (241)
366 cd03260 ABC_PstB_phosphate_tra 94.8 0.027 5.8E-07 47.5 3.2 26 153-178 25-50 (227)
367 PF06745 KaiC: KaiC; InterPro 94.8 0.056 1.2E-06 45.5 5.2 50 153-205 18-67 (226)
368 cd03226 ABC_cobalt_CbiO_domain 94.8 0.026 5.6E-07 46.8 3.0 26 153-178 25-50 (205)
369 PRK02496 adk adenylate kinase; 94.8 0.026 5.6E-07 45.9 3.0 23 156-178 3-25 (184)
370 cd03235 ABC_Metallic_Cations A 94.8 0.024 5.2E-07 47.3 2.9 26 153-178 24-49 (213)
371 PRK05973 replicative DNA helic 94.8 0.062 1.3E-06 45.7 5.4 41 153-195 63-103 (237)
372 PRK05703 flhF flagellar biosyn 94.8 0.055 1.2E-06 50.2 5.4 40 154-193 221-260 (424)
373 PRK15177 Vi polysaccharide exp 94.8 0.027 5.8E-07 47.2 3.1 26 153-178 12-37 (213)
374 TIGR02211 LolD_lipo_ex lipopro 94.8 0.027 5.9E-07 47.2 3.2 36 153-191 30-65 (221)
375 PRK14974 cell division protein 94.8 0.064 1.4E-06 48.1 5.7 28 152-179 138-165 (336)
376 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.053 1.2E-06 46.2 5.0 47 153-203 20-66 (237)
377 cd03115 SRP The signal recogni 94.7 0.03 6.5E-07 45.0 3.3 24 156-179 2-25 (173)
378 TIGR02528 EutP ethanolamine ut 94.7 0.02 4.2E-07 44.2 2.1 23 156-178 2-24 (142)
379 smart00175 RAB Rab subfamily o 94.7 0.022 4.7E-07 44.8 2.4 23 156-178 2-24 (164)
380 cd03264 ABC_drug_resistance_li 94.7 0.022 4.8E-07 47.4 2.6 33 156-191 27-59 (211)
381 cd00876 Ras Ras family. The R 94.7 0.023 5E-07 44.4 2.5 21 157-177 2-22 (160)
382 PRK10584 putative ABC transpor 94.7 0.027 5.9E-07 47.5 3.2 35 153-190 35-69 (228)
383 PRK13231 nitrogenase reductase 94.7 0.024 5.2E-07 49.0 2.8 25 155-179 3-27 (264)
384 cd03296 ABC_CysA_sulfate_impor 94.7 0.027 5.8E-07 47.9 3.1 26 153-178 27-52 (239)
385 cd04160 Arfrp1 Arfrp1 subfamil 94.7 0.026 5.7E-07 44.7 2.9 21 157-177 2-22 (167)
386 PRK14528 adenylate kinase; Pro 94.7 0.029 6.4E-07 45.9 3.2 24 155-178 2-25 (186)
387 PRK08058 DNA polymerase III su 94.7 0.19 4.1E-06 45.0 8.7 44 135-178 7-52 (329)
388 PRK12727 flagellar biosynthesi 94.7 0.053 1.2E-06 51.3 5.2 27 153-179 349-375 (559)
389 PLN03046 D-glycerate 3-kinase; 94.7 0.05 1.1E-06 50.0 4.9 27 153-179 211-237 (460)
390 PF00406 ADK: Adenylate kinase 94.7 0.025 5.5E-07 44.4 2.7 21 159-179 1-21 (151)
391 cd01864 Rab19 Rab19 subfamily. 94.7 0.023 5.1E-07 45.0 2.6 23 155-177 4-26 (165)
392 TIGR01650 PD_CobS cobaltochela 94.7 0.084 1.8E-06 47.0 6.2 42 135-178 47-88 (327)
393 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.028 6E-07 47.7 3.2 35 153-190 26-60 (236)
394 PRK00279 adk adenylate kinase; 94.7 0.029 6.2E-07 47.0 3.2 23 156-178 2-24 (215)
395 PRK06647 DNA polymerase III su 94.7 0.04 8.7E-07 52.9 4.5 51 129-179 12-63 (563)
396 PRK07133 DNA polymerase III su 94.7 0.038 8.3E-07 54.2 4.4 50 129-178 14-64 (725)
397 PRK08533 flagellar accessory p 94.7 0.1 2.2E-06 44.2 6.6 39 154-194 24-62 (230)
398 PRK12338 hypothetical protein; 94.7 0.031 6.7E-07 49.6 3.4 25 154-178 4-28 (319)
399 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.063 1.4E-06 45.3 5.3 41 153-195 19-59 (229)
400 cd04136 Rap_like Rap-like subf 94.7 0.025 5.3E-07 44.5 2.6 22 156-177 3-24 (163)
401 cd01878 HflX HflX subfamily. 94.7 0.027 5.9E-07 46.5 3.0 26 153-178 40-65 (204)
402 PLN03186 DNA repair protein RA 94.7 0.066 1.4E-06 48.2 5.6 52 153-204 122-177 (342)
403 cd03224 ABC_TM1139_LivF_branch 94.7 0.029 6.3E-07 47.0 3.1 36 153-191 25-60 (222)
404 COG1120 FepC ABC-type cobalami 94.7 0.028 6E-07 48.3 3.0 36 153-191 27-62 (258)
405 cd01876 YihA_EngB The YihA (En 94.7 0.025 5.4E-07 44.4 2.6 20 157-176 2-21 (170)
406 cd03265 ABC_DrrA DrrA is the A 94.7 0.03 6.4E-07 47.0 3.2 36 153-191 25-60 (220)
407 COG1875 NYN ribonuclease and A 94.7 0.045 9.8E-07 49.0 4.3 40 135-174 226-265 (436)
408 TIGR02239 recomb_RAD51 DNA rep 94.7 0.08 1.7E-06 47.2 6.0 51 153-203 95-149 (316)
409 cd04124 RabL2 RabL2 subfamily. 94.7 0.025 5.5E-07 44.8 2.6 21 157-177 3-23 (161)
410 PRK07952 DNA replication prote 94.6 0.072 1.6E-06 45.6 5.5 50 141-192 84-135 (244)
411 PRK12678 transcription termina 94.6 0.13 2.9E-06 49.0 7.6 75 144-219 405-482 (672)
412 cd00157 Rho Rho (Ras homology) 94.6 0.026 5.6E-07 44.8 2.6 23 156-178 2-24 (171)
413 PRK13185 chlL protochlorophyll 94.6 0.036 7.9E-07 48.0 3.7 26 154-179 2-27 (270)
414 cd03257 ABC_NikE_OppD_transpor 94.6 0.029 6.4E-07 47.2 3.0 26 153-178 30-55 (228)
415 cd02034 CooC The accessory pro 94.6 0.039 8.5E-07 41.5 3.4 23 157-179 2-24 (116)
416 PF00071 Ras: Ras family; Int 94.6 0.03 6.6E-07 44.1 2.9 22 157-178 2-23 (162)
417 cd00878 Arf_Arl Arf (ADP-ribos 94.6 0.024 5.3E-07 44.5 2.3 22 157-178 2-23 (158)
418 cd04177 RSR1 RSR1 subgroup. R 94.6 0.027 5.8E-07 44.9 2.6 23 156-178 3-25 (168)
419 TIGR01420 pilT_fam pilus retra 94.6 0.063 1.4E-06 48.4 5.2 28 151-178 119-146 (343)
420 PRK14721 flhF flagellar biosyn 94.6 0.068 1.5E-06 49.4 5.5 26 153-178 190-215 (420)
421 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.064 1.4E-06 46.4 5.1 41 153-195 35-75 (259)
422 TIGR02770 nickel_nikD nickel i 94.6 0.031 6.7E-07 47.3 3.0 27 153-179 11-37 (230)
423 cd03258 ABC_MetN_methionine_tr 94.5 0.032 7E-07 47.2 3.2 27 153-179 30-56 (233)
424 PRK11629 lolD lipoprotein tran 94.5 0.032 6.9E-07 47.3 3.1 35 153-190 34-68 (233)
425 PRK00454 engB GTP-binding prot 94.5 0.036 7.9E-07 45.2 3.4 28 150-177 20-47 (196)
426 PRK13973 thymidylate kinase; P 94.5 0.17 3.7E-06 42.3 7.5 26 155-180 4-29 (213)
427 KOG1969 DNA replication checkp 94.5 0.06 1.3E-06 52.2 5.1 48 153-205 325-372 (877)
428 TIGR03598 GTPase_YsxC ribosome 94.5 0.039 8.4E-07 44.6 3.5 28 151-178 15-42 (179)
429 PRK13765 ATP-dependent proteas 94.5 0.072 1.6E-06 51.8 5.8 74 128-205 26-99 (637)
430 PRK05563 DNA polymerase III su 94.5 0.053 1.1E-06 52.2 4.9 50 129-178 12-62 (559)
431 PRK13538 cytochrome c biogenes 94.5 0.033 7.2E-07 46.1 3.2 27 153-179 26-52 (204)
432 cd01897 NOG NOG1 is a nucleola 94.5 0.027 6E-07 44.6 2.6 24 155-178 1-24 (168)
433 PRK06067 flagellar accessory p 94.5 0.07 1.5E-06 45.2 5.2 49 153-205 24-72 (234)
434 TIGR00101 ureG urease accessor 94.5 0.037 7.9E-07 45.9 3.3 25 155-179 2-26 (199)
435 TIGR03608 L_ocin_972_ABC putat 94.5 0.03 6.6E-07 46.3 2.9 36 153-191 23-58 (206)
436 PRK06995 flhF flagellar biosyn 94.5 0.068 1.5E-06 50.2 5.4 40 153-192 255-294 (484)
437 PRK11248 tauB taurine transpor 94.5 0.033 7.1E-07 48.0 3.2 26 153-178 26-51 (255)
438 PRK11124 artP arginine transpo 94.5 0.033 7.1E-07 47.5 3.1 36 153-191 27-62 (242)
439 PF00006 ATP-synt_ab: ATP synt 94.5 0.16 3.4E-06 42.7 7.1 71 145-219 5-84 (215)
440 cd03301 ABC_MalK_N The N-termi 94.5 0.034 7.4E-07 46.3 3.2 35 153-190 25-59 (213)
441 PRK14730 coaE dephospho-CoA ki 94.5 0.034 7.4E-07 45.9 3.1 23 155-177 2-24 (195)
442 PRK12726 flagellar biosynthesi 94.5 0.065 1.4E-06 48.7 5.1 39 153-193 205-243 (407)
443 PF00025 Arf: ADP-ribosylation 94.5 0.055 1.2E-06 43.7 4.3 34 144-177 3-37 (175)
444 KOG2227 Pre-initiation complex 94.5 0.99 2.1E-05 42.0 12.6 49 131-179 148-200 (529)
445 COG1484 DnaC DNA replication p 94.5 0.081 1.8E-06 45.6 5.5 38 153-192 104-141 (254)
446 PRK10247 putative ABC transpor 94.5 0.034 7.4E-07 46.9 3.2 36 153-191 32-67 (225)
447 cd03219 ABC_Mj1267_LivG_branch 94.5 0.031 6.7E-07 47.4 2.9 35 153-190 25-59 (236)
448 PTZ00133 ADP-ribosylation fact 94.5 0.052 1.1E-06 44.1 4.1 34 144-177 7-40 (182)
449 PRK07429 phosphoribulokinase; 94.5 0.038 8.2E-07 49.4 3.5 28 152-179 6-33 (327)
450 PRK05416 glmZ(sRNA)-inactivati 94.5 0.032 6.9E-07 49.0 3.0 22 154-175 6-27 (288)
451 PRK09183 transposase/IS protei 94.5 0.048 1E-06 47.1 4.1 26 154-179 102-127 (259)
452 cd04137 RheB Rheb (Ras Homolog 94.5 0.034 7.4E-07 44.7 3.0 23 155-177 2-24 (180)
453 COG2607 Predicted ATPase (AAA+ 94.5 0.15 3.2E-06 43.3 6.7 72 132-205 59-134 (287)
454 TIGR01184 ntrCD nitrate transp 94.4 0.035 7.5E-07 47.0 3.1 26 153-178 10-35 (230)
455 KOG0989 Replication factor C, 94.4 0.065 1.4E-06 46.9 4.7 67 129-195 32-99 (346)
456 cd03262 ABC_HisP_GlnQ_permease 94.4 0.036 7.7E-07 46.2 3.2 35 153-190 25-59 (213)
457 TIGR01425 SRP54_euk signal rec 94.4 0.048 1E-06 50.4 4.2 27 153-179 99-125 (429)
458 cd01860 Rab5_related Rab5-rela 94.4 0.028 6.2E-07 44.2 2.4 23 156-178 3-25 (163)
459 PRK04220 2-phosphoglycerate ki 94.4 0.057 1.2E-06 47.5 4.4 27 152-178 90-116 (301)
460 PRK06526 transposase; Provisio 94.4 0.038 8.3E-07 47.6 3.4 27 153-179 97-123 (254)
461 TIGR00764 lon_rel lon-related 94.4 0.069 1.5E-06 51.9 5.4 48 130-179 15-62 (608)
462 cd04123 Rab21 Rab21 subfamily. 94.4 0.031 6.6E-07 43.8 2.6 23 156-178 2-24 (162)
463 TIGR03575 selen_PSTK_euk L-ser 94.4 0.052 1.1E-06 48.7 4.3 35 157-192 2-36 (340)
464 COG3638 ABC-type phosphate/pho 94.4 0.034 7.3E-07 46.9 2.8 26 153-178 29-54 (258)
465 PRK13540 cytochrome c biogenes 94.4 0.038 8.2E-07 45.7 3.2 36 153-191 26-61 (200)
466 cd03246 ABCC_Protease_Secretio 94.4 0.04 8.6E-07 44.4 3.2 26 153-178 27-52 (173)
467 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.4 0.03 6.4E-07 44.4 2.4 22 156-177 4-25 (166)
468 PRK13539 cytochrome c biogenes 94.4 0.038 8.2E-07 45.9 3.2 26 153-178 27-52 (207)
469 COG0378 HypB Ni2+-binding GTPa 94.4 0.09 2E-06 43.0 5.1 59 154-214 13-73 (202)
470 KOG0635 Adenosine 5'-phosphosu 94.4 0.075 1.6E-06 41.7 4.5 32 149-180 26-57 (207)
471 cd01898 Obg Obg subfamily. Th 94.4 0.03 6.5E-07 44.4 2.4 21 157-177 3-23 (170)
472 cd03295 ABC_OpuCA_Osmoprotecti 94.4 0.037 8.1E-07 47.1 3.2 35 153-190 26-60 (242)
473 cd03218 ABC_YhbG The ABC trans 94.4 0.037 8.1E-07 46.7 3.1 36 153-191 25-60 (232)
474 TIGR01189 ccmA heme ABC export 94.4 0.039 8.5E-07 45.5 3.2 36 153-191 25-60 (198)
475 PF01078 Mg_chelatase: Magnesi 94.4 0.079 1.7E-06 44.0 4.9 44 132-177 2-45 (206)
476 PRK10908 cell division protein 94.4 0.038 8.2E-07 46.4 3.2 35 153-190 27-61 (222)
477 cd01135 V_A-ATPase_B V/A-type 94.4 0.17 3.6E-06 44.0 7.1 68 152-219 67-144 (276)
478 cd04101 RabL4 RabL4 (Rab-like4 94.4 0.03 6.5E-07 44.2 2.4 22 156-177 2-23 (164)
479 cd03268 ABC_BcrA_bacitracin_re 94.4 0.039 8.4E-07 45.8 3.2 36 153-191 25-60 (208)
480 cd03232 ABC_PDR_domain2 The pl 94.3 0.037 8E-07 45.5 3.0 25 153-177 32-56 (192)
481 PRK14247 phosphate ABC transpo 94.3 0.037 8.1E-07 47.4 3.1 26 153-178 28-53 (250)
482 PRK14489 putative bifunctional 94.3 0.08 1.7E-06 48.2 5.4 43 138-180 186-231 (366)
483 PRK00771 signal recognition pa 94.3 0.079 1.7E-06 49.3 5.4 27 153-179 94-120 (437)
484 cd02029 PRK_like Phosphoribulo 94.3 0.032 6.9E-07 48.2 2.6 24 156-179 1-24 (277)
485 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.038 8.3E-07 47.4 3.1 27 153-179 24-50 (246)
486 PRK06851 hypothetical protein; 94.3 0.096 2.1E-06 47.5 5.8 45 152-197 28-72 (367)
487 COG4778 PhnL ABC-type phosphon 94.3 0.051 1.1E-06 43.7 3.5 33 156-191 39-71 (235)
488 PF06068 TIP49: TIP49 C-termin 94.3 0.069 1.5E-06 48.1 4.7 50 132-181 23-77 (398)
489 cd01134 V_A-ATPase_A V/A-type 94.3 0.39 8.4E-06 43.2 9.4 72 144-219 146-233 (369)
490 TIGR01978 sufC FeS assembly AT 94.3 0.038 8.2E-07 47.0 3.1 25 153-177 25-49 (243)
491 COG4088 Predicted nucleotide k 94.3 0.043 9.2E-07 45.4 3.1 25 155-179 2-26 (261)
492 cd04140 ARHI_like ARHI subfami 94.3 0.034 7.3E-07 44.1 2.6 22 156-177 3-24 (165)
493 COG4608 AppF ABC-type oligopep 94.3 0.055 1.2E-06 46.6 3.9 27 153-179 38-64 (268)
494 PRK14494 putative molybdopteri 94.3 0.053 1.1E-06 45.9 3.8 25 155-179 2-26 (229)
495 cd04171 SelB SelB subfamily. 94.3 0.038 8.2E-07 43.4 2.8 21 156-176 2-22 (164)
496 COG1224 TIP49 DNA helicase TIP 94.2 0.095 2.1E-06 46.9 5.4 55 132-186 38-97 (450)
497 cd03252 ABCC_Hemolysin The ABC 94.2 0.04 8.7E-07 46.7 3.1 26 153-178 27-52 (237)
498 cd03214 ABC_Iron-Siderophores_ 94.2 0.043 9.4E-07 44.5 3.2 35 153-190 24-58 (180)
499 PRK11247 ssuB aliphatic sulfon 94.2 0.04 8.7E-07 47.6 3.1 26 153-178 37-62 (257)
500 cd03223 ABCD_peroxisomal_ALDP 94.2 0.043 9.4E-07 44.0 3.1 27 153-179 26-52 (166)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-38 Score=306.16 Aligned_cols=270 Identities=26% Similarity=0.450 Sum_probs=210.3
Q ss_pred HHHhhhhHHHHhhhhhhccccc-----hhHHHHHhcCcccchHHHHHHHHHHHHHHHHHHhhhhHHHhh-----------
Q 038843 12 VVKCLAPPAERQFSYLRSYNNN-----HAVDEAKRKGIEIEKKVEKWLDSVNNAIFEAEKFVGDEAAAN----------- 75 (283)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~-----~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~daed~ld~~~~~~----------- 75 (283)
++....+.+...-.++.+++++ ..++|++++... ...+..|...++++.|++||+++.+..+.
T Consensus 15 ~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~ 93 (889)
T KOG4658|consen 15 LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST 93 (889)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 4444444444444455555555 789999987665 78999999999999999999998764321
Q ss_pred ------hhhccCcC-cChhhHhHHHHHHHHHHHHHHHHHHcCCCCccccc-ccccccccccCCCCCCccccHHHHHHHHH
Q 038843 76 ------KQCFKGLC-PNLKTRIEHNKEALRQLEAIVKLREAGRFDRISYR-SLREDIVIMSNKDYAPFESRMSTLNDILG 147 (283)
Q Consensus 76 ------~~~~~~~~-~~~~~~~~i~~~i~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gr~~~~~~l~~ 147 (283)
+.|+...+ .++...+.+++++.++.+.++.+...+.|...... .++......|.....+ +|.+..++++++
T Consensus 94 ~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~ 172 (889)
T KOG4658|consen 94 RSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWN 172 (889)
T ss_pred hHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHH
Confidence 12232322 33555677888888888888888666666655432 2222233333333333 899999999999
Q ss_pred HhcCCCceEEEEEecCCchhhHHHHHHHHhhh-hcCCCCeEEEEEeCCccCHHHHHHHh---------------------
Q 038843 148 ALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE-NEKLFDQVIFAEVSQNQDIRKIQGEI--------------------- 205 (283)
Q Consensus 148 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i--------------------- 205 (283)
.|.+++.++++|+||||+||||||++++|+.. ++.+||.++||+||+.++...++.+|
T Consensus 173 ~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~ 252 (889)
T KOG4658|consen 173 RLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELAS 252 (889)
T ss_pred HhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHH
Confidence 99988889999999999999999999999988 99999999999999999999999988
Q ss_pred ------------------------------------CcEeEEeecchhHHhhhcCCh----------hHHHHHHHHHhCC
Q 038843 206 ------------------------------------GCKILLRARSEDTLSRKLDSK----------QNFSSLFKKMAGD 239 (283)
Q Consensus 206 ------------------------------------~s~iivTTR~~~v~~~~~~~~----------~~~~~Lf~~~~~~ 239 (283)
||||++|||++.|+...|+.+ +..|.||++.+|.
T Consensus 253 ~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 253 KLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred HHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 799999999999976547653 3456999999993
Q ss_pred --CCCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCC-ChhHHhhcC
Q 038843 240 --YIEGSEFKSVAMDVAEECAGLPVSIVTIARALRNK-SLFEWKDAL 283 (283)
Q Consensus 240 --~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k-~~~~W~~~l 283 (283)
....+.++++|++++++|+|||||++++|++|+.| +.++|++++
T Consensus 333 ~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~ 379 (889)
T KOG4658|consen 333 NTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRAL 379 (889)
T ss_pred ccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34446699999999999999999999999999998 999999873
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=7.7e-27 Score=204.68 Aligned_cols=145 Identities=34% Similarity=0.565 Sum_probs=117.6
Q ss_pred cHHHHHHHHHHhcC--CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh----------
Q 038843 138 RMSTLNDILGALKN--PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI---------- 205 (283)
Q Consensus 138 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i---------- 205 (283)
|+.++++|.++|.+ ++.++|+|+||||+||||||.+++++..++.+|+.++|++++...+...++..|
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999997 789999999999999999999999997777999999999998887766666655
Q ss_pred ------------------------------------------------CcEeEEeecchhHHhhhcC----------Chh
Q 038843 206 ------------------------------------------------GCKILLRARSEDTLSRKLD----------SKQ 227 (283)
Q Consensus 206 ------------------------------------------------~s~iivTTR~~~v~~~~~~----------~~~ 227 (283)
+|+||+|||+..++..... ..+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999988632221 133
Q ss_pred HHHHHHHHHhCCC--CCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCC-ChhHHhhc
Q 038843 228 NFSSLFKKMAGDY--IEGSEFKSVAMDVAEECAGLPVSIVTIARALRNK-SLFEWKDA 282 (283)
Q Consensus 228 ~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k-~~~~W~~~ 282 (283)
..++||++.++.. ..++.+.+.+++|+++|+|+||||+++|++|+.+ ++.+|.++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~ 218 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEA 218 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3449999999833 2456678899999999999999999999999765 88889875
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.5e-23 Score=214.15 Aligned_cols=150 Identities=23% Similarity=0.415 Sum_probs=117.0
Q ss_pred CCCCccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe---CCc----------
Q 038843 131 DYAPFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV---SQN---------- 195 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 195 (283)
...+++|++..++++..+|. .++.++|+|+||||+||||||+.+|+... .+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45568899999999999886 56789999999999999999999999766 78998888742 110
Q ss_pred -cCH-HHHH----------------------HHh------------------------------CcEeEEeecchhHHhh
Q 038843 196 -QDI-RKIQ----------------------GEI------------------------------GCKILLRARSEDTLSR 221 (283)
Q Consensus 196 -~~~-~~i~----------------------~~i------------------------------~s~iivTTR~~~v~~~ 221 (283)
++. ..++ +.+ ||+||||||+.+++..
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 000 0011 111 8999999999999742
Q ss_pred hcC----------ChhHHHHHHHHHhCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCCChhHHhhcC
Q 038843 222 KLD----------SKQNFSSLFKKMAGDY-IEGSEFKSVAMDVAEECAGLPVSIVTIARALRNKSLFEWKDAL 283 (283)
Q Consensus 222 ~~~----------~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k~~~~W~~~l 283 (283)
++ ..+..++||+.+||.. ..+.++.+++++|+++|+|+||||+++|+.|++++.++|+.+|
T Consensus 340 -~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 340 -HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred -cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2334559999999943 3455788999999999999999999999999999999999864
No 4
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=2.7e-07 Score=82.99 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc--CHHHHHHHhCcEeEEeecchhHH
Q 038843 144 DILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ--DIRKIQGEIGCKILLRARSEDTL 219 (283)
Q Consensus 144 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~s~iivTTR~~~v~ 219 (283)
.+++.+. =+..+..+|+|.+|+||||||+.||++...+ ||+.++||.+++.. .+.++++.+.+-||+.|-+....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3555554 2455778999999999999999999998765 89999999998887 88999999987788888776654
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=5.5e-07 Score=77.17 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc--cCHHHHHHHhCcEeEEeecchh
Q 038843 145 ILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN--QDIRKIQGEIGCKILLRARSED 217 (283)
Q Consensus 145 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~s~iivTTR~~~ 217 (283)
.++.+. =.....++|.|.+|+|||||++.++++.... +|+..+|+.+++. +++.++++.+.+-+++.+-+..
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~ 80 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEP 80 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCC
Confidence 344443 2456789999999999999999999997754 8999999997777 7999999999888888877753
No 6
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.24 E-value=1.2e-05 Score=71.91 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|++..++.+..++. ....+.+.++|++|+|||+||+.+.+...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 3456779999999988877765 34467888999999999999999998754
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.22 E-value=1e-05 Score=71.61 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+++|++..++++..++. ....+.+.++|++|+|||+||+.+.+...
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568899999999888886 34456788999999999999999998764
No 8
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.15 E-value=1.7e-05 Score=66.23 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCCCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|-+..+.++--++. ++....+-.+|++|.||||||..+.+...
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 4457788898887777544433 35678899999999999999999998876
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.14 E-value=3.9e-06 Score=68.24 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 135 FESRMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
|+||+++++++...+. +...+.+.|+|.+|+|||+|.+.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6799999999999993 5567999999999999999999999887755
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.13 E-value=8.1e-06 Score=73.87 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=56.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc--cCHHHHHHHhCcEeEEeecchh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN--QDIRKIQGEIGCKILLRARSED 217 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~s~iivTTR~~~ 217 (283)
+....++|+|.+|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+.+.||+.|-+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p 232 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEP 232 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCC
Confidence 456789999999999999999999987654 8999999999866 7899999999888888887754
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.09 E-value=0.00015 Score=62.88 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+.+.|+|++|+|||||++.+++...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44567899999999999999999998765
No 12
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=5.8e-05 Score=76.43 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
..+++-|....+.+-+ ....+++.|+|++|.||||++.+..+. ++.+.|+++...
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~ 67 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDES 67 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcc
Confidence 3345566655554432 246789999999999999999998742 336889998533
No 13
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.01 E-value=2.9e-05 Score=71.16 Aligned_cols=62 Identities=21% Similarity=0.197 Sum_probs=46.1
Q ss_pred CCCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 132 YAPFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
+..+.||++++++|...+. +...+.+.|+|++|+|||++++.++++.......-..++++..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 4457799999999998874 3445667899999999999999999987643322334555543
No 14
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.97 E-value=3e-05 Score=70.29 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 133 APFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.||+.++++|..++. +...+.+.|+|++|+|||++++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999886 34456889999999999999999998754
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.94 E-value=8.8e-06 Score=68.44 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=37.6
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|+||+.++++|.+++.++..+.+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 57999999999999988778999999999999999999998876
No 16
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=4.9e-05 Score=69.94 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=54.8
Q ss_pred CCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHH
Q 038843 133 APFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
.++++.+..++.++..|... +.|.++|++|+|||++|+.+++......+|+.+.||++++.++..+.+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 34667888899999988754 467789999999999999999887655678889999998776655544
No 17
>PRK08118 topology modulation protein; Reviewed
Probab=97.90 E-value=7.4e-06 Score=66.09 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=36.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhc-CCCCeEE----EEEeCCccCHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENE-KLFDQVI----FAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~----wv~vs~~~~~~~i~~~i 205 (283)
+.|.|+|++|+||||||+.+++..... -+||..+ |..+++. ....+++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~ 56 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNEL 56 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHH
Confidence 468999999999999999999987644 3578777 5555443 344455554
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.87 E-value=5.9e-05 Score=58.12 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q 038843 137 SRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ 196 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 196 (283)
|++..+..+...+.....+.+.|+|.+|+|||+|++.+++... ..-..++++..++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 6788889999988877778899999999999999999998864 112345666665443
No 19
>PF05729 NACHT: NACHT domain
Probab=97.83 E-value=5.5e-05 Score=60.11 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=31.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCC----CCeEEEEEeCCc
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKL----FDQVIFAEVSQN 195 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~ 195 (283)
|++.|+|.+|+||||+++.+......... +...+|.+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDI 45 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhh
Confidence 57899999999999999999988665443 345667766433
No 20
>PTZ00202 tuzin; Provisional
Probab=97.76 E-value=0.00014 Score=66.53 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=42.4
Q ss_pred cCCCCCCccccHHHHHHHHHHhcC---CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKN---PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|....+|+||+.++..+...|.+ ...+++.|.|++|+|||||++.+.....
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445566799999999999998863 2346889999999999999999986543
No 21
>PRK06893 DNA replication initiation factor; Validated
Probab=97.69 E-value=0.0017 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.+.++|.+|+|||+|++.+.+...
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999998753
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00051 Score=65.98 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=42.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+...
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44566788999999999999987765 4568999999999999999977653
No 23
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0013 Score=58.51 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=51.1
Q ss_pred CCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh----hcCCCCeEEEEE-eCCccCHHHH
Q 038843 132 YAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE----NEKLFDQVIFAE-VSQNQDIRKI 201 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~i 201 (283)
+.+++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++..- ...|+|...|.. -+....+.++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 34577888889999999986654 6778999999999999999988642 235678777765 3444444443
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00097 Score=65.04 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..+.+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+..
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567788999999999999987664 566799999999999999887764
No 25
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.55 E-value=7.3e-05 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 26
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0014 Score=56.54 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 129 NKDYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
|..+.+++|-++.++++-=++. ++..-.+-++|++|.||||||..+.+...++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 3345678898877777665554 5677899999999999999999999987643
No 27
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.00019 Score=60.70 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 137 SRMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 137 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|...+++|.+.+. .+...+|+|.|.+|+||||||+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677788888775 45678999999999999999999998764
No 28
>PRK09087 hypothetical protein; Validated
Probab=97.44 E-value=0.0067 Score=51.35 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=64.0
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhhc----CCC---------CeEEEEE-eCC-ccCHHHHHHHh------CcEe
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAENE----KLF---------DQVIFAE-VSQ-NQDIRKIQGEI------GCKI 209 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F---------~~~~wv~-vs~-~~~~~~i~~~i------~s~i 209 (283)
+...+.+.|+|..|+|||+|++.+++..... ..| +..+-++ +.. ..+...++.-+ |..+
T Consensus 41 ~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~i 120 (226)
T PRK09087 41 NWPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSL 120 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 3345679999999999999999988653311 001 0111111 110 12334444433 7889
Q ss_pred EEeecchhHHhhh--------c----------CChhHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 038843 210 LLRARSEDTLSRK--------L----------DSKQNFSSLFKKMAGDYIEGSEFKSVAMDVAEECAGLPVSIVTIARAL 271 (283)
Q Consensus 210 ivTTR~~~v~~~~--------~----------~~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L 271 (283)
|+|++...-.... + .+.+....++++.+... .-.--+++..-|++.+.|-+-++..+-..|
T Consensus 121 lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 121 LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred EEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9988753321100 0 01122225666655421 112226677888888888877776543333
No 29
>PRK07261 topology modulation protein; Provisional
Probab=97.43 E-value=0.00023 Score=57.59 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=31.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhc-CCCCeEEEEEeCCccCHHHHHH
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENE-KLFDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~ 203 (283)
.|.|+|++|+||||||+.+....... -+.|...|-.-....+..+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~ 50 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIA 50 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHH
Confidence 58999999999999999998764321 1456666654323333333333
No 30
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.37 E-value=0.0087 Score=50.96 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 140 STLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 140 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+..+..+......+.+.|+|+.|+|||+|++.+++...
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445555554444557889999999999999999887643
No 31
>PRK08727 hypothetical protein; Validated
Probab=97.33 E-value=0.01 Score=50.53 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCCccccH-HHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 132 YAPFESRM-STLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 132 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
+.+|++.. ..+..+.....+.....+.|+|..|+|||.|++.+++..... .....|++.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~ 77 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL 77 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence 44444333 334444443334445679999999999999999998875422 223445554
No 32
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.32 E-value=0.00034 Score=62.73 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=40.4
Q ss_pred CccccHHHHHHHHHHhcC------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALKN------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999872 3468899999999999999999998875
No 33
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.31 E-value=0.00043 Score=61.50 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=40.4
Q ss_pred HHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc----cCHHHHHHHh
Q 038843 145 ILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN----QDIRKIQGEI 205 (283)
Q Consensus 145 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~----~~~~~i~~~i 205 (283)
|.+.+..+..+-+.+||++|.||||||+.+.+..+... ..||++|-. .++++++++-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 44444567889999999999999999999998866322 456665433 3566665543
No 34
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.30 E-value=0.00024 Score=54.33 Aligned_cols=53 Identities=34% Similarity=0.406 Sum_probs=36.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhc---CCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENE---KLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
+.+.+.|+|.+|+|||++++.+.++.... ..-..++|++.+...+...+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 58 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEI 58 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHH
Confidence 35788999999999999999999886421 113446799887777777776666
No 35
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.30 E-value=0.00045 Score=61.80 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.++.|++..++.+..++.++..+.+.++|..|+||||+|+.+.+...
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334566789999999999998877767788999999999999999987654
No 36
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.27 E-value=0.00025 Score=65.59 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCCCCccccHHHHHH---HHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLND---ILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+++|.+..+.. +..++.++..+.+.++|++|+||||||+.+.+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 445568888877655 77777777778889999999999999999988654
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.25 E-value=0.00083 Score=56.54 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 137 SRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+....++.+..++.....+.+.|+|..|+|||+||+.+++...
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456677777776666678899999999999999999987653
No 38
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0048 Score=58.51 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-|..+.+++|-+..++.|.+++..+..+ .+-++|+.|+||||+|+.+.+..-
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455677889999999999999877664 478999999999999999987653
No 39
>PLN03025 replication factor C subunit; Provisional
Probab=97.20 E-value=0.001 Score=59.30 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|....+++|.+..++.|.+++.++..+.+-++|++|+||||+|..+.+..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44456678988888888888877777778899999999999999998775
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.19 E-value=0.0013 Score=58.32 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++|++..++.+.+++..+..+.+.++|..|+||||+++.+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455688999999999999987777778999999999999999998774
No 41
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0022 Score=61.65 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=49.4
Q ss_pred CCCccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHH
Q 038843 132 YAPFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKI 201 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 201 (283)
..+.+|.++-++.|++++. +.+..++..+|++|+|||++|+.|..-.. ..| +-++++.-.|+.+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhh
Confidence 4567899999999999986 44679999999999999999999998765 333 22355555555443
No 42
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0091 Score=56.13 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=40.8
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
|..+.+++|.+..++.+.+.+..+..+ .+-++|+.|+||||+|+.+...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 445777889998888888888877664 7899999999999999988763
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.15 E-value=0.00069 Score=65.70 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=44.5
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCC
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKL 183 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 183 (283)
+..+.+++|++..+..++..+.......+.|+|.+|+||||||+.+++......+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~ 204 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKH 204 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 3445568899999999988887666778999999999999999999887654333
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0059 Score=58.96 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.|..++.++. .+.+.++|..|+||||+|+.+.+..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456778899999999999998765 4677899999999999999987764
No 45
>PRK07667 uridine kinase; Provisional
Probab=97.11 E-value=0.0007 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=29.9
Q ss_pred HHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 142 LNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 142 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.|++.+. .....+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355666665 34558999999999999999999988654
No 46
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0058 Score=58.23 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+...+..+.. +.+.++|+.|+||||+|+.+.+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788999999999999887655 557899999999999999998754
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.09 E-value=0.0012 Score=59.49 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=71.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCC-CeEEEEEeCCccCHHHHHHHh--------------------------
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLF-DQVIFAEVSQNQDIRKIQGEI-------------------------- 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i-------------------------- 205 (283)
..+.+.++|.||+||||++-++.+ .. ..| +.+.++......|...+.-..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 457899999999999999999988 33 557 555555543332222222211
Q ss_pred ---------------------------CcEeEEeecchhHHhhh-------cCChhHHHHHHHHHhC----CCCCCcchH
Q 038843 206 ---------------------------GCKILLRARSEDTLSRK-------LDSKQNFSSLFKKMAG----DYIEGSEFK 247 (283)
Q Consensus 206 ---------------------------~s~iivTTR~~~v~~~~-------~~~~~~~~~Lf~~~~~----~~~~~~~~~ 247 (283)
.-.|+.|+|+.-..... +........+|...+. .-.-.....
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 33455566654322100 0000011166666653 111223446
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhCCCh
Q 038843 248 SVAMDVAEECAGLPVSIVTIARALRNKSL 276 (283)
Q Consensus 248 ~~~~~i~~~c~GlPLai~~ig~~L~~k~~ 276 (283)
..+.+|.++..|.||+|...++..++-.+
T Consensus 170 a~v~~icr~ldg~~laielaaarv~sl~~ 198 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRSLSP 198 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCH
Confidence 67788999999999999999888775533
No 48
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0087 Score=57.42 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44566788999999999999876554 568899999999999999997764
No 49
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0093 Score=58.01 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=42.1
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|..+.+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344567789999999999999987765 56799999999999999988775
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0047 Score=61.47 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceE-EEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNM-LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|.+++..+.... +.++|..|+||||+|+.+.+...
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3456678899999999999988776654 58999999999999999987754
No 51
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.05 E-value=0.0008 Score=67.53 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=41.8
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+++||+++++.+++.|.....+-+.++|.+|+|||+||..+.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999876666678999999999999999988754
No 52
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0055 Score=61.21 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=42.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++|.+..++.|..++.++... .+.++|..|+||||+|+.+.+...
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344667889999999999999877664 578999999999999999977764
No 53
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.00099 Score=53.94 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 143 NDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 143 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+...+......+|+|.|.+|+||||||+.+.+...
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444555567789999999999999999999987643
No 54
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.03 E-value=0.00057 Score=51.86 Aligned_cols=21 Identities=48% Similarity=0.765 Sum_probs=19.7
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|.|.|.+|+||||||+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 55
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.03 E-value=0.00094 Score=55.96 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=59.5
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
.|....+++|-++.++.+--...+++.+-+.|.||+|+||||-+..+.+..--...=+.+.-.+.|..-.+.-+-..|
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 344566788999999888887789999999999999999999888877765422223666777778777666666666
No 56
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00093 Score=52.77 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=28.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
.--|+|.||+|+|||||++.+.+..+.+ .|...-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEE
Confidence 3568999999999999999999988754 36554333
No 57
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.01 E-value=0.00057 Score=56.38 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
||+|.|.+|+||||||+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999988765
No 58
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.0011 Score=53.59 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=29.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+|.+.|+.|+||||+|+.+++... ..+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEe
Confidence 456999999999999999999998875 3455555553
No 59
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.012 Score=56.03 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+..++.++.. +.+.++|..|+||||+|+.+....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788999999999999887665 456899999999999999997664
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0061 Score=59.12 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=42.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|...+..+.. +.+.++|..|+||||+|+.+.+..-
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 44567788999999999998887665 4468999999999999999977653
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.97 E-value=0.0011 Score=66.46 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++||+.++.++++.|......-+.++|.+|+||||||..+.+...
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999877777778999999999999999998753
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=96.96 E-value=0.00059 Score=64.41 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=41.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcC----CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKN----PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|....+++|.+..++++.+|+.. ...+.+.|+|++|+||||+|+.+.+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44566788999999999998862 236889999999999999999998764
No 63
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0011 Score=63.76 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=40.7
Q ss_pred CCccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 133 APFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+|.++-++.|+++|. .-..++++++|++|+|||+|++.|.....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 457799999999999986 33568999999999999999999998765
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.95 E-value=0.0012 Score=65.35 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=41.9
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++||+.++.++++.|......-+.++|.+|+|||+||+.+.+..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345688999999999999987666677899999999999999998875
No 65
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.017 Score=53.00 Aligned_cols=46 Identities=9% Similarity=0.158 Sum_probs=37.7
Q ss_pred CCCccccHHHHHHHHHHhcCCC----------ceEEEEEecCCchhhHHHHHHHHh
Q 038843 132 YAPFESRMSTLNDILGALKNPD----------VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+.+++|-+..++.|.+.+..+. .+-+-++|+.|+|||++|..+.+.
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457788888888888887543 466889999999999999998765
No 66
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.94 E-value=0.0014 Score=55.58 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|+|.|..|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999999987754
No 67
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.93 E-value=0.0012 Score=62.48 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=42.0
Q ss_pred CCCccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+++|.++.+++|++.|. +...+++.++|++|+||||||+.+.+-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4468899999999999993 56778999999999999999999998764
No 68
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.92 E-value=0.00092 Score=55.78 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....+|+|.|.+|+|||||++.+....
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999865
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0093 Score=57.57 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.|.+.+..+.. +-+-++|+.|+||||+|+.+.+..
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34567789999999999999987765 468899999999999999997764
No 70
>PRK08233 hypothetical protein; Provisional
Probab=96.91 E-value=0.00084 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987653
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.011 Score=57.06 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=40.8
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|-+..++.|.+++..+.. +.+-++|..|+||||+|+.+.+..
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788988888999998887765 566899999999999999995543
No 72
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.89 E-value=0.033 Score=54.78 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=39.0
Q ss_pred HHHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q 038843 143 NDILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ 196 (283)
Q Consensus 143 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 196 (283)
..+++.|.+ .+.+.+.|..++|.|||||+-+..... ..=..+.|.+++..-
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~d 76 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESD 76 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCcc
Confidence 356666664 488999999999999999999998632 223568999996664
No 73
>PF13173 AAA_14: AAA domain
Probab=96.89 E-value=0.0014 Score=50.22 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
.+++.|.|+-|+|||||+++++.+.. ....+++++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCH
Confidence 46899999999999999999997754 2345666666544
No 74
>PRK05642 DNA replication initiation factor; Validated
Probab=96.87 E-value=0.055 Score=46.00 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+.|+|..|+|||.|++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999987543
No 75
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.86 E-value=0.001 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998554
No 76
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.018 Score=51.36 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=89.3
Q ss_pred ccCCCCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhhh-------------
Q 038843 127 MSNKDYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAEN------------- 180 (283)
Q Consensus 127 ~~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------- 180 (283)
.|...+.++-|-++++++|.+... =++++-|-++|++|.|||-||++|.|.-..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 344445667788998888887765 136788899999999999999999987431
Q ss_pred ----------------cCCCCeEEEEEe----------CCccCHHHHHHHh--------------CcEeEEeecchhHHh
Q 038843 181 ----------------EKLFDQVIFAEV----------SQNQDIRKIQGEI--------------GCKILLRARSEDTLS 220 (283)
Q Consensus 181 ----------------~~~F~~~~wv~v----------s~~~~~~~i~~~i--------------~s~iivTTR~~~v~~ 220 (283)
+++=.+++|++= ++.-.-.++++.+ .-|||..|...++..
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 234456777751 2222344444444 778999888877641
Q ss_pred hh---cC-----------ChhHHHHHHHHHhC--CCCCCcchHHHHHHHHHHcCCCh----HHHHHHHHHhh
Q 038843 221 RK---LD-----------SKQNFSSLFKKMAG--DYIEGSEFKSVAMDVAEECAGLP----VSIVTIARALR 272 (283)
Q Consensus 221 ~~---~~-----------~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlP----Lai~~ig~~L~ 272 (283)
.. .| +...-.++|+-|.. +-...-+++. +++.|.|+- -|+.+=|++++
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHHHHHHHhHHH
Confidence 11 11 11111288888886 3334445554 555566653 45666677765
No 77
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.82 E-value=0.0018 Score=65.17 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++||+.++..+++.|......-+.++|.+|+|||+||..+.....
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999877666777999999999999999988753
No 78
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.82 E-value=0.0011 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|.+|+|||||++.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987643
No 79
>PRK06762 hypothetical protein; Provisional
Probab=96.82 E-value=0.0011 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 80
>PTZ00301 uridine kinase; Provisional
Probab=96.81 E-value=0.0011 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.81 E-value=0.0015 Score=64.27 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=39.9
Q ss_pred CCCCCCccccHHHHH---HHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLN---DILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..+. .+...+..+..+.+.++|++|+||||||+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 445566889887764 466666677777889999999999999999987653
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.79 E-value=0.0017 Score=57.68 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=41.2
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|....+++|.+...+.+.+++..+.. ..+.++|.+|+|||++|+.+++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 44566788999999999999886654 566679999999999999998753
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.023 Score=53.78 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|-+..++.+...+..+. .+.+-++|..|+||||+|+.+.+...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456678899998888888777655 46888999999999999999987653
No 84
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.77 E-value=0.0023 Score=50.71 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
..+|.|.|.+|+||||||+.+....... -..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 4689999999999999999999988733 34555664
No 85
>PHA00729 NTP-binding motif containing protein
Probab=96.77 E-value=0.002 Score=54.26 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 143 NDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 143 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445666666677789999999999999999998864
No 86
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.76 E-value=0.0012 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 87
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.71 E-value=0.0043 Score=51.59 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGE 204 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 204 (283)
..+++-|+|.+|+|||+|+.++..... ..-..++|++... ++...+.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH
Confidence 358899999999999999999887754 3346789999875 555555443
No 88
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.71 E-value=0.012 Score=47.44 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 136 ESRMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 136 ~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|.+..+.++++.+. ..+ .-|.|+|-.|+||+.+|+.+++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 566777777777665 334 445699999999999999999853
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.71 E-value=0.0043 Score=52.38 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 141 TLNDILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 141 ~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+.++.. ....+.+.|+|..|+|||+||+.+++..
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444433 2345678899999999999999998864
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.70 E-value=0.002 Score=58.52 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=38.3
Q ss_pred CCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.++.|++..+++|.+.+. . ...+-+.++|++|+|||+||+.+++..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 334567899999988888764 1 235668999999999999999998754
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.033 Score=54.07 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=41.5
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.|..++..+.. +.+-++|..|+||||+|..+....
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788999999999999987766 458899999999999999887754
No 92
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.69 E-value=0.014 Score=50.64 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCC-CeEEEEEeCCcc-CHHHHHHHh-------CcEeEEeecchhHH
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLF-DQVIFAEVSQNQ-DIRKIQGEI-------GCKILLRARSEDTL 219 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i-------~s~iivTTR~~~v~ 219 (283)
...+.++|.|-.|.|||||++.++++.. .+| +.++++-+++.. .+.++.+.+ .+-+++.|-++...
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~ 141 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPG 141 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHH
Confidence 3557889999999999999999999876 345 566777776664 455666665 45677777776543
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.68 E-value=0.0018 Score=59.38 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=38.4
Q ss_pred CCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++.|++..++++.+.+. + ...+-|.++|++|+|||+||+.+++...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 34467799999888887663 1 3456789999999999999999987643
No 94
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0091 Score=54.23 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=51.1
Q ss_pred ccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 135 FESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
+.+|+.+++++...|. ++.+.-+.|.|..|.|||+.++.+.+.......=..+++|+.-...+...++..|
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 6699999999988776 3444448999999999999999999987633211116777765555555555544
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.65 E-value=0.0029 Score=63.81 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++||+.++.++++.|......-+.++|.+|+|||+|+..+.+...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999876666777999999999999999988753
No 96
>PRK10536 hypothetical protein; Provisional
Probab=96.64 E-value=0.013 Score=50.33 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=42.9
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEE
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIF 189 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 189 (283)
.+...+.++......++.++.+. ..+.+.|.+|.|||+||..+..+.-....|+..+-
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34455678888888899988764 49999999999999999998875322234554443
No 97
>PRK03839 putative kinase; Provisional
Probab=96.62 E-value=0.0017 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|.|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998754
No 98
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.0021 Score=60.87 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+...+.|..++.++.. +.+.++|++|+||||+|+.+.+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456688999888889888887665 4569999999999999999988764
No 99
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0024 Score=57.52 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCCCCccccHHHH---HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTL---NDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|....+++|-+..+ .-|..++..+...-.-.||++|+||||||+.+...-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 33444556655433 3455556677888888999999999999999987544
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.0032 Score=59.07 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.|...+.++.. +.+.++|++|+||||+|+.+.+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44566788998888888888877766 558899999999999999998764
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.028 Score=54.14 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceE-EEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNM-LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|..++.++.... +.++|..|+||||+|+.+.+...
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456678899999999999998776654 78999999999999999987643
No 102
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.56 E-value=0.0021 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.++|.|.|.+|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998543
No 103
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.54 E-value=0.0097 Score=52.21 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=23.0
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+.+|+|.|..|+||||||+.+..-.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998775443
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.0021 Score=48.78 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=27.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
.+.+.|+|.+|+||||+++.+.+..... ....++++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCE
Confidence 3578999999999999999999876522 1235555544
No 105
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.0038 Score=56.73 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=41.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 34566788999999999998886654 567899999999999999998765
No 106
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.53 E-value=0.0034 Score=53.79 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=24.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
....|.++||+|+||||..+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 45677889999999999999999987733
No 107
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.065 Score=51.75 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.|.+++..+.. +.+.++|..|+||||+|+.+.+..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44567788999999999999887665 567899999999999999987764
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.0036 Score=57.63 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=41.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|..++.++..+ .+.++|+.|+||||+|..+.+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 344667889998889899988877664 488999999999999999887653
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.48 E-value=0.013 Score=58.15 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCccccHHHHHHHHHHhc----C-CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 133 APFESRMSTLNDILGALK----N-PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.+|++++++|...|. . ....++-|+|++|.|||+.++.|.+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 458899999999998886 2 2335678999999999999999987753
No 110
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.48 E-value=0.0066 Score=51.40 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=37.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCC----CCeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKL----FDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|+|.+|+|||+|+.++.-....... -..++|++....++...+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 4578999999999999999999755332221 25789999888777655543
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.47 E-value=0.0024 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEecCCchhhHHHHHHHHhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.|+|.+|+|||++|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999998864
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.061 Score=52.08 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..+.+++|.+..++.|..++.++.. +.+.++|..|+||||+|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788999999999988886655 556899999999999999998764
No 113
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.47 E-value=0.0027 Score=50.88 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+...|.++|++|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998754
No 114
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.46 E-value=0.0075 Score=51.55 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHH
Q 038843 141 TLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRK 200 (283)
Q Consensus 141 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (283)
...++++.+. .++..+|+|.|.+|+||+||...+......+.+=-.++=|+-|.+++--.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc
Confidence 4556666665 45789999999999999999999988776443333345555555555433
No 115
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.45 E-value=0.002 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 116
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.43 E-value=0.0099 Score=45.96 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=32.0
Q ss_pred EEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
|.++|.+|+|||+||+.+..... ....-+.++...+..++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~ 45 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSY 45 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeee
Confidence 57899999999999999998762 123445677777777766544
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.42 E-value=0.0045 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
....+.++|++|+||||+|+.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHH
Confidence 4466789999999999999999765
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.42 E-value=0.0021 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|..|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987654
No 119
>PRK04040 adenylate kinase; Provisional
Probab=96.41 E-value=0.0031 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0044 Score=61.39 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++||++++.++++.|......-+.++|.+|+|||+||+.+.+..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999986555566789999999999999998764
No 121
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.38 E-value=0.0079 Score=50.51 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=29.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHH
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRK 200 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (283)
.|+|+|-||+||||+|..+......+..|+. +=|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCChHH
Confidence 6899999999999999996655443333433 3355554555443
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.38 E-value=0.085 Score=44.40 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=27.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...-+-|+|..|+|||.|.+.+++.......=..+++++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 345678999999999999999998865321112345555
No 123
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.37 E-value=0.003 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999997764
No 124
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.062 Score=51.92 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|...+.++. .+.+-++|..|+||||+|+.+.+..-
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3345667898888888888887665 57888999999999999999987754
No 125
>PRK00625 shikimate kinase; Provisional
Probab=96.36 E-value=0.0029 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987643
No 126
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0034 Score=52.30 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+|||.|.+|+||||+|+.+++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999998765
No 127
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.35 E-value=0.0026 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998874
No 128
>PRK06217 hypothetical protein; Validated
Probab=96.33 E-value=0.0029 Score=51.62 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCC--CeEEEEE
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLF--DQVIFAE 191 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~ 191 (283)
.|.|.|.+|+||||||+.+...... .+| |..+|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 5899999999999999999988653 234 5566754
No 129
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.33 E-value=0.0035 Score=50.73 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998764
No 130
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.0046 Score=57.70 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=42.6
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..+..|..++.++..+ .+.++|..|+||||+|+.+.+...
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445667889998999999998877764 589999999999999999987643
No 131
>PRK06851 hypothetical protein; Provisional
Probab=96.31 E-value=0.065 Score=48.55 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccC
Q 038843 137 SRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQD 197 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 197 (283)
|.....+.++ .+-.+++.|.|.+|+|||||+++++..... ..++..++=|-+.+-.
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPds 256 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDS 256 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCC
Confidence 3333444454 344688999999999999999999988753 4677777666555433
No 132
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.31 E-value=0.0046 Score=48.26 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=29.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999998763 4566666777655
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.31 E-value=0.018 Score=48.90 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=38.7
Q ss_pred CCCCCccccHHHHHHHHH----HhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILG----ALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+++|.+.+++.|++ ++...+..-+-++|..|.|||+|++.+.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 344557788877776664 44456778888999999999999999988654
No 134
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.0043 Score=50.15 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 135
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.27 E-value=0.0077 Score=50.04 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 137 SRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
.+.......++.|. ...++.+.|++|.|||.||....-+.-....|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455566666666 456999999999999999999887765557888887774
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.26 E-value=0.0097 Score=59.50 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=36.8
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+++|.+..++.|.+++. ....+++.++|++|+|||+||+.+.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888888888664 22446899999999999999999988753
No 137
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.26 E-value=0.0031 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998754
No 138
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.26 E-value=0.0032 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 139
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.26 E-value=0.0031 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988753
No 140
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.086 Score=49.80 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=40.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.+.+++..+.. +.+.++|..|+||||+|+.+....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566788999999999999987654 556789999999999999987653
No 141
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.24 E-value=0.012 Score=51.52 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 143 NDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 143 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++..+++...+..++.|.|.+|+|||||...+.+...
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555567899999999999999999999998764
No 142
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.24 E-value=0.012 Score=49.59 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=35.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKI 201 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 201 (283)
...++.|+|.+|+|||+|+.++..... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 357999999999999999999987764 234667899887 5554443
No 143
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.24 E-value=0.0074 Score=52.14 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ 196 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 196 (283)
...+++.|.|.+|+|||+++.++...-. ++...++||+..+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCH
Confidence 3568999999999999999999988876 458889999997663
No 144
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.24 E-value=0.0034 Score=48.79 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997653
No 145
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.22 E-value=0.012 Score=49.54 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=37.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCC------CeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLF------DQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|.|.+|+|||+|+.++..... ..- ..++|++....++...+.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHHH
Confidence 357999999999999999999976643 122 4678999887777665544
No 146
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0039 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=23.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+|+|-||=|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 147
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.22 E-value=0.0085 Score=52.12 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=43.8
Q ss_pred HHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHH
Q 038843 143 NDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 143 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
.+++..+. .++..+|+|.|.+|+||+||.-.+......+.|=-.++=|+-|++++--.|+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45666665 5678899999999999999999998887655554455666666666544443
No 148
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.22 E-value=0.007 Score=47.53 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=30.6
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccC
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQD 197 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 197 (283)
++.|+|.+|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999887652 335577887765543
No 149
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.22 E-value=0.22 Score=43.78 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCC----CeEEEEEeCCccCHHHHHHHh
Q 038843 140 STLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLF----DQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 140 ~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i 205 (283)
..++.+-+.+. ....+-+.|+|.+|.|||++++.+....-....= -.++.|.....++...++..|
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 34455555554 3456778999999999999999998775322111 136677777888888877777
No 150
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.20 E-value=0.0052 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=24.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 567999999999999999999998765
No 151
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.16 E-value=0.0071 Score=49.30 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
.++|.|+|+.|+|||||++.+..... ..|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 47899999999999999999998755 45654444443
No 152
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.16 E-value=0.0075 Score=51.31 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=29.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
-.++|+|..|+|||||...+..... ..|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3678999999999999999988765 67888777754
No 153
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.15 E-value=0.004 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
++|+|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999874
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.14 E-value=0.0083 Score=55.69 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=37.1
Q ss_pred CCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++.|.+..+++|.+.+. + ....-+.++|.+|.|||+||+.+.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34556788888877777653 1 2456788999999999999999998654
No 155
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.13 E-value=0.005 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 156
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0046 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998765
No 157
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.0087 Score=54.40 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=42.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.+.+.+.++.. +.+-++|+.|+||||+|+.+.+..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44566788999999999999987654 588899999999999999997764
No 158
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.10 E-value=0.0041 Score=46.11 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=19.9
Q ss_pred EEEEecCCchhhHHHHHHHHhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|-|+|.+|+|||+||+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887754
No 159
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.10 E-value=0.012 Score=55.59 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=39.9
Q ss_pred cCCCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|...+.++.|.+..+++|.+.+. . ...+-+.++|++|.|||++|+.+++...
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 33445567788888888877653 1 2456789999999999999999999864
No 160
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.013 Score=52.93 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=42.3
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.....++|.+...+.+...+.++.. +.+.|+|..|+||||||..+.+..-
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 44556688999999999999987765 4588999999999999998877653
No 161
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.08 E-value=0.012 Score=56.13 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=39.9
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+.+++|.+..++.+...+......-+.|+|.+|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345568899999999988877666667789999999999999999864
No 162
>PRK13947 shikimate kinase; Provisional
Probab=96.08 E-value=0.0048 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-|.|+|++|+||||+++.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988754
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.08 E-value=0.015 Score=48.13 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..+.+..+..+.-++..|.|.+|.||||++..+......
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 344445454455678999999999999999998877653
No 164
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.07 E-value=0.0065 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 146 LGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 146 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+...++++|+++|..|+|||||.+++.+...
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444467899999999999999999999987643
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.07 E-value=0.0091 Score=54.86 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=38.2
Q ss_pred cCCCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|...+.++.|.+..+++|.+.+. . ...+-+.++|++|.|||+||+.+.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34445567788887777766553 1 245778999999999999999998764
No 166
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.04 E-value=0.014 Score=51.92 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=36.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGE 204 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 204 (283)
.+++...|.||+||||+|-...-... +....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998766655 23345777777777776666554
No 167
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.04 E-value=0.0095 Score=54.06 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCC----CceEEEEEecCCchhhH-HHHHHHHhhhhcCCCCeEEEEEe
Q 038843 139 MSTLNDILGALKNP----DVNMLGIYGMGGIRKTT-LPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 139 ~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v 192 (283)
.+....+..++.++ +.++|+++|+.|+|||| ||+..+.-... ..=..+..++.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITt 241 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITT 241 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEe
Confidence 44455566665544 58999999999999998 66665544311 11233455554
No 168
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.04 E-value=0.0095 Score=47.34 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
+++|+|+.|+|||||+..+...... ..+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 5899999999999999999988653 2455544443
No 169
>PRK08116 hypothetical protein; Validated
Probab=96.02 E-value=0.014 Score=50.72 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=28.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
.-+.++|..|+|||.||..+++..... -..+++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~ 151 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFP 151 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 458899999999999999999987532 3345666653
No 170
>PRK14527 adenylate kinase; Provisional
Probab=96.02 E-value=0.0069 Score=49.75 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.|+|.+|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999986654
No 171
>PRK13949 shikimate kinase; Provisional
Probab=96.02 E-value=0.0054 Score=49.46 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|.|+|+.|+|||||++.+.....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987754
No 172
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.02 E-value=0.0066 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|+|+|++|+||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988653
No 173
>PRK08181 transposase; Validated
Probab=96.01 E-value=0.017 Score=50.26 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 147 GALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 147 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
+|+. ...-+.++|.+|+|||.||..+.+.... ....++|++.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~~ 142 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTRT 142 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeeeH
Confidence 4554 2345899999999999999999876542 2223455554
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.01 E-value=0.015 Score=48.18 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
+++|.++|+.|+||||.+-++......+ -..+..++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCC
Confidence 4789999999999999888887776633 3335566653
No 175
>PRK14530 adenylate kinase; Provisional
Probab=95.99 E-value=0.006 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.|.|+|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999986653
No 176
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.98 E-value=0.006 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEecCCchhhHHHHHHHHhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.++|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999987653
No 177
>CHL00181 cbbX CbbX; Provisional
Probab=95.97 E-value=0.019 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+.++|.+|+||||+|+.+++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999997653
No 178
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.0089 Score=57.88 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=41.9
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|.+..++.|.+.+.++.. +.+.++|+.|+||||+|..+.+...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44566788999999999998887666 4588999999999999998877653
No 179
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0059 Score=49.69 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998843
No 180
>PRK13695 putative NTPase; Provisional
Probab=95.96 E-value=0.011 Score=47.79 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=26.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
.|+|.|.+|+|||||++.+++.... ..|....|++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEc
Confidence 4789999999999999999887553 2354444543
No 181
>PRK13975 thymidylate kinase; Provisional
Probab=95.93 E-value=0.007 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|+|.|+.|+||||+++.+.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998765
No 182
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.92 E-value=0.012 Score=52.99 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+.+++.++.. +.+-++|.+|+||||+|+.+....
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456688999999999999987654 567899999999999998887664
No 183
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.91 E-value=0.0052 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 184
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0092 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999765
No 185
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.90 E-value=0.0062 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEecCCchhhHHHHHHHHhhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999977643
No 186
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.016 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=28.2
Q ss_pred HHhcCCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 147 GALKNPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 147 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..+......+|...|.+|+||||||..++.....
T Consensus 16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3344566789999999999999999999988763
No 187
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.89 E-value=0.02 Score=48.00 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=32.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccC
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQD 197 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 197 (283)
...++.|.|.+|+|||||+.++..... ..=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 457899999999999999999987754 2224567887655543
No 188
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.89 E-value=0.03 Score=50.33 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=53.9
Q ss_pred CccccHHHHHHHHHHhcCCCc---eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 134 PFESRMSTLNDILGALKNPDV---NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
.+.+|+.++..+...+.+.+. ..|-|.|-.|.|||.+.+++.+... -..+|++.-..++...++..|
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 466899999999998885433 4557899999999999999998773 135899998888887777776
No 189
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.86 E-value=0.0061 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998753
No 190
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.86 E-value=0.008 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|.|+|+.|+|||||++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999998764
No 191
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.86 E-value=0.011 Score=47.05 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+++|.++|.+ +++.++|..|+|||||.+.+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4666666654 699999999999999999998774
No 192
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.85 E-value=0.0066 Score=49.67 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 193
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.84 E-value=0.0079 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
+.|+|.|-||+||||++..+......
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 47999999999999999999877664
No 194
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.84 E-value=0.0086 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|.|.|.+|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 195
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.84 E-value=0.0089 Score=49.69 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=29.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
..-|++|+|++|+|||||.+-+..-+.. =.+.+|+.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECC
Confidence 4579999999999999999998876542 256777764
No 196
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.83 E-value=0.013 Score=55.54 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCCccccHHHHHHHHHHhcC-----CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 132 YAPFESRMSTLNDILGALKN-----PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
..++.-..+.++++..||.+ ...+++.+.|++|+||||.++.+.+... |+.+=|.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~ 77 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWI 77 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEec
Confidence 33444556677788888862 2457899999999999999999988753 4555554
No 197
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.82 E-value=0.013 Score=52.80 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++..++|-++.+..|+..+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44566788999988888888888888888899999999999999997653
No 198
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.81 E-value=0.016 Score=44.71 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=28.8
Q ss_pred HHHHHHHHhcC--CCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 141 TLNDILGALKN--PDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 141 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
+..++-+.|.. ....+|.+.|.-|+|||||++.+.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 33444444432 23468999999999999999999987653
No 199
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.81 E-value=0.023 Score=50.68 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=39.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCC----CeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLF----DQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i 205 (283)
...++-|+|.+|+|||+|+.++.........+ ..++|++....++...+.+..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 45788899999999999999998764322111 468999998888877665543
No 200
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.80 E-value=0.06 Score=43.97 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 144 DILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 144 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+.+..+.. +.+.++|..|+||||+|..+.+...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45555655555 6789999999999999999977754
No 201
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.79 E-value=0.017 Score=51.86 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+..++|.+..+..++-.+.+....-+.|.|..|.|||||++.+..-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 4557898888888877777777777889999999999999999644
No 202
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.78 E-value=0.0071 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988754
No 203
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.77 E-value=0.0088 Score=49.04 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 204
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.75 E-value=0.026 Score=50.09 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=39.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCC----CCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKL----FDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i 205 (283)
...++-|+|.+|+|||+|+.++......... =..++||+....++...+.+.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 3578889999999999999999876432111 1368999998887777655443
No 205
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.12 Score=49.34 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|-+...+.+...+..+..+ .+-++|..|+||||+|+.+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 345667889998899999998877654 66899999999999999887664
No 206
>PRK04182 cytidylate kinase; Provisional
Probab=95.75 E-value=0.0088 Score=48.23 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987643
No 207
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.74 E-value=0.03 Score=46.74 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=28.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh-----hcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE-----NEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
+..|.|++|.||||++..+..... ....-+..+-++......+..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 788999999999987666665551 11233444444444454555555554
No 208
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.74 E-value=0.011 Score=47.03 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
.++++|+|..|+|||||...+......+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999998887643
No 209
>PRK05439 pantothenate kinase; Provisional
Probab=95.74 E-value=0.044 Score=48.54 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999887754
No 210
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.74 E-value=0.018 Score=53.77 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred CccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++||++.++.++..+..+ .-|-|.|.+|+|||+||+.+.....
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 4779999999998888755 3578999999999999999997543
No 211
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.73 E-value=0.022 Score=50.33 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 142 LNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 142 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++-+. .+...+|+|.|.+|+|||||+..+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555554 35679999999999999999999887654
No 212
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.73 E-value=0.048 Score=49.40 Aligned_cols=74 Identities=7% Similarity=0.046 Sum_probs=53.1
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe-EEEEEeCCcc-CHHHHHHHhCcEeEEeecch
Q 038843 142 LNDILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ-VIFAEVSQNQ-DIRKIQGEIGCKILLRARSE 216 (283)
Q Consensus 142 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~s~iivTTR~~ 216 (283)
...+++.+.- +....+.|+|..|+|||||++.+.+..... +-+. ++|+.+++.. .+.++++.+..-++..|.++
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 3457787762 455677999999999999999998876532 3345 4777776664 67888888866666666443
No 213
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.72 E-value=0.015 Score=49.69 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=22.4
Q ss_pred EEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 159 IYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 159 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
|+|++|+||||+.+.+.+..... -..++-|++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcc
Confidence 68999999999999999887632 2334555553
No 214
>PLN02165 adenylate isopentenyltransferase
Probab=95.71 E-value=0.012 Score=52.34 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=26.1
Q ss_pred HhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 148 ALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 148 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.+....+|+|+|+.|+|||+||..+....
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 3456667799999999999999999998763
No 215
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.70 E-value=0.015 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++++++|..|+||||++..+.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987665
No 216
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.69 E-value=0.015 Score=48.05 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.|.|+|..|+||||++..+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999998776543
No 217
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.69 E-value=0.017 Score=54.82 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=34.9
Q ss_pred cCCCCCCccccHHHHHHHH---HHhcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDIL---GALKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~---~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+...+.++.|.+..++++. .++.+ ...+-+.++|++|.|||+||+.+.+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 3444556778766655444 43332 234568899999999999999998764
No 218
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.68 E-value=0.074 Score=43.25 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
...-+.++|..|+|||.||..+.+..-. ..+ .+.|++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec
Confidence 3456999999999999999999887553 233 3466664
No 219
>PF13245 AAA_19: Part of AAA domain
Probab=95.66 E-value=0.033 Score=38.56 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=18.5
Q ss_pred CceEEEEEecCCchhhHHH-HHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLP-KEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa-~~v~~~~ 178 (283)
+.++..|.|.+|.|||+++ ..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999544 4444433
No 220
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.65 E-value=0.037 Score=49.56 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 142 LNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 142 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++.+. .+...+|+|.|.+|+|||||...+.....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555554 45778999999999999999999877765
No 221
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.018 Score=52.36 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|....+++|.+...+.+.+.+.++..+ -+-++|+.|+||+|+|..+.+..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334556889999999999998877654 58899999999999998887654
No 222
>PRK13948 shikimate kinase; Provisional
Probab=95.64 E-value=0.012 Score=48.01 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+.|.++||.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987653
No 223
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.63 E-value=0.011 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+.|.|+|.+|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5688999999999999999999754
No 224
>PLN02348 phosphoribulokinase
Probab=95.63 E-value=0.022 Score=51.78 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 143 NDILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 143 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+..... .+...+|+|.|.+|+||||||+.+.+...
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444443 35678999999999999999999988754
No 225
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.014 Score=49.29 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..-.++|+|..|+|||||++.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 456899999999999999999975543
No 226
>PRK13946 shikimate kinase; Provisional
Probab=95.60 E-value=0.01 Score=48.42 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 227
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.59 E-value=0.012 Score=43.49 Aligned_cols=22 Identities=36% Similarity=0.276 Sum_probs=20.0
Q ss_pred ceEEEEEecCCchhhHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
...++|.|..|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999976
No 228
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.56 E-value=0.012 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|.|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998754
No 229
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.56 E-value=0.0086 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.-|+|+|.+|+|||||+..+.++.-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 5689999999999999999998754
No 230
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.54 E-value=0.024 Score=54.55 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=35.1
Q ss_pred CCccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 133 APFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++.|.+-.+.|.+... .....+|.|+|+.|+||||+|+.+.....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 345566666665555544 34556899999999999999999998765
No 231
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.53 E-value=0.013 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
++|+|+|.+|+|||||+..+......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999999887644
No 232
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.52 E-value=0.012 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|+|.|-.|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999866
No 233
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.52 E-value=0.011 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|.|-||+||||++..+..-..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la 25 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALA 25 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHH
Confidence 5799999999999999888877765
No 234
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.51 E-value=0.01 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987654
No 235
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.51 E-value=0.012 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 236
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.51 E-value=0.016 Score=51.19 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=25.5
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
+++.++|++.|-||+||||++..+..-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 456799999999999999998888777553
No 237
>PLN02200 adenylate kinase family protein
Probab=95.51 E-value=0.013 Score=49.78 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998654
No 238
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.50 E-value=0.018 Score=51.58 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=38.4
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++..++|.+..++.+.-.+.+...+-+.+.|..|.||||||+.+.+-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456678988888877765655555679999999999999999996553
No 239
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.49 E-value=0.013 Score=47.55 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+++|+|..|+|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998654
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.49 E-value=0.021 Score=46.31 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.6
Q ss_pred EEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
+.|.|.+|+|||+|+.++...... .. ..++|++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g-~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RG-EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CC-CcEEEEECCCC
Confidence 678999999999999998776441 11 44678887544
No 241
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.47 E-value=0.029 Score=48.91 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
.+.++|.++|++|+||||++..+...... .. ..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~-~g-~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK-QG-KSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh-cC-CEEEEEeCC
Confidence 34689999999999999999888876642 22 245555543
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.02 Score=54.42 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred CCCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 132 YAPFESRMSTLNDILGALK---N---------PDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
+.++-|.+..+.++.+++. . ...+-|.+||++|.|||.||+.+.+...+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 4557788888888777665 1 25688899999999999999999988653
No 243
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.44 E-value=0.013 Score=47.20 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEecCCchhhHHHHHHHHhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.|.|.+|+|||||.+.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998875
No 244
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.028 Score=51.09 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=28.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
...+++++|+.|+||||++..+......+.....+..++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3579999999999999999999887542222234555553
No 245
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.44 E-value=0.025 Score=50.29 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=32.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDI 198 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 198 (283)
..+++-|+|.+|+||||||.++...... .-..++|++..+.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHH
Confidence 4578999999999999999998776542 2345678876655544
No 246
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.43 E-value=0.015 Score=44.77 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=27.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
..+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~ 45 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILIN 45 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEET
T ss_pred CCEEEEEccCCCccccceeeeccccc---ccccccccc
Confidence 46899999999999999999887654 234555554
No 247
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.089 Score=51.19 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.++.|.+...+.|..++..+.. +.+-++|..|+||||+|+.+.+..-
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 4456788999999999998886643 6788999999999999999987754
No 248
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.43 E-value=0.042 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-+.++|.+|.|||++|+.+....
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999997776554
No 249
>PRK08356 hypothetical protein; Provisional
Probab=95.42 E-value=0.015 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.7
Q ss_pred ceEEEEEecCCchhhHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
..+|+|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999993
No 250
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.41 E-value=0.012 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 251
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.41 E-value=0.022 Score=55.27 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=41.2
Q ss_pred cCCCCCCccccHHHHHHHHHHhcC-----CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKN-----PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|....++.|.+..++++..|+.+ ...+++.|+|++|+||||+++.+....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355566788999999999988873 234679999999999999999998664
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.41 E-value=0.025 Score=50.39 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=34.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIR 199 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (283)
..+++-|+|.+|+||||||.++..... ..-..++|++....++..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH
Confidence 357888999999999999999887654 233567888876666543
No 253
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.39 E-value=0.016 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|+|-||+||||++..+..-..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La 26 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA 26 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999887765
No 254
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.39 E-value=0.016 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|.|-||+||||++..+..-..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La 26 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA 26 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 5788889999999999999887765
No 255
>PRK15453 phosphoribulokinase; Provisional
Probab=95.39 E-value=0.016 Score=50.35 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+....+|+|.|-+|+||||+++.+.+..
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999887543
No 256
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.39 E-value=0.16 Score=47.55 Aligned_cols=26 Identities=42% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..-+.|+|..|+|||+|++.+.+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH
Confidence 35688999999999999999988543
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.11 Score=51.16 Aligned_cols=49 Identities=27% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCCccccHH---HHHHHHHHhcCC---------CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMS---TLNDILGALKNP---------DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++.|-++ ++.+++++|.+. -++-+-++|++|.|||-||+++.-...
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC
Confidence 3556777765 556666666642 467788999999999999999976543
No 258
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.39 E-value=0.013 Score=49.37 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
..-.++|+|+.|+|||||...+.--.+. -.+.+++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~ 65 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLIN 65 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEEC
Confidence 4468999999999999999988765542 33444544
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.39 E-value=0.014 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 260
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.38 E-value=0.012 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+++|.+|+|||||.+.+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 261
>PRK06761 hypothetical protein; Provisional
Probab=95.38 E-value=0.03 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|.|.|++|+||||+++.+.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998865
No 262
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.014 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999988776654
No 263
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.013 Score=51.55 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
-++|-++|++|.|||+|.+.++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4889999999999999999999997665
No 264
>PLN02796 D-glycerate 3-kinase
Probab=95.33 E-value=0.014 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..-+|+|.|..|+|||||++.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457899999999999999999997764
No 265
>PRK14532 adenylate kinase; Provisional
Probab=95.33 E-value=0.014 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.+.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998654
No 266
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.32 E-value=0.015 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|.|+|+.|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588899999999999999997654
No 267
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.013 Score=46.94 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=18.8
Q ss_pred EEEEEecCCchhhHHHHHHH
Q 038843 156 MLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~ 175 (283)
.|+|.|-+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 268
>PLN02924 thymidylate kinase
Probab=95.32 E-value=0.076 Score=44.73 Aligned_cols=33 Identities=9% Similarity=-0.011 Sum_probs=26.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ 186 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 186 (283)
....|+|-|..|+||||+++.+.+..... ++..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v 47 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAA 47 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCc
Confidence 34689999999999999999999887643 3444
No 269
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.31 E-value=0.012 Score=45.00 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=18.4
Q ss_pred EEEEecCCchhhHHHHHHHHhhhhcCCC
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAENEKLF 184 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~~~~~F 184 (283)
|-|.|.+|+||||||+.+..... ..|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----E
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Cce
Confidence 67899999999999999998765 445
No 270
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.30 E-value=0.015 Score=53.55 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..-.+.|+|+|..|+|||||++.+.+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998763
No 271
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.28 E-value=0.034 Score=49.27 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=32.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 203 (283)
+++.+.|.||+||||+|-...-....+. ..++-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 6889999999999999987776655322 2355566665555555543
No 272
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.27 E-value=0.028 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++++|+|..|+|||||+..+.....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998765
No 273
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.26 E-value=0.018 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|+|-||+||||++..+..-..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789899999999999998877654
No 274
>PRK14531 adenylate kinase; Provisional
Probab=95.26 E-value=0.017 Score=47.13 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|.|+|++|+||||+++.+.....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987653
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.031 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++|+++|.+|+||||++..+.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999999999987654
No 276
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.25 E-value=0.15 Score=47.67 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh-------CcEeEEeecchhHH
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI-------GCKILLRARSEDTL 219 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i-------~s~iivTTR~~~v~ 219 (283)
...+.++|.|-+|+|||||+..+.++.... +-+.++++-+++.. .+.++...+ .+-+++.|-++...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~ 215 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPG 215 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHH
Confidence 356789999999999999999998876633 56888888887664 355566655 56777777776554
No 277
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.25 E-value=0.057 Score=44.23 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987653
No 278
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.24 E-value=0.032 Score=49.89 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=41.0
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++|.++.++++++.+. +..-+++-++|+-|.|||||+..+-+-.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 68899999999999887 45679999999999999999999987765
No 279
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.24 E-value=0.017 Score=40.96 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999888753
No 280
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.23 E-value=0.025 Score=46.24 Aligned_cols=38 Identities=21% Similarity=0.027 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 140 STLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 140 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+..+++...... ...++|+|..|+|||||++.+....
T Consensus 12 ~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444555544443 4689999999999999999887653
No 281
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.21 E-value=0.053 Score=49.86 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 135 FESRMSTLNDILGALKN--------------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|.++.++.+.-.+.+ ...+.|.++|++|+|||+||+.+.....
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777666666544432 1247889999999999999999998765
No 282
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.03 Score=52.43 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+.+++..+.. +.+-++|..|+||||+|+.+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34566788999999999999987665 568899999999999999997754
No 283
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.21 E-value=0.027 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|.|-||+||||++..+..-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999998877665
No 284
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.21 E-value=0.02 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.|.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998763
No 285
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.20 E-value=0.017 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.++|.+|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998654
No 286
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.20 E-value=0.038 Score=55.71 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 135 FESRMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++||+.+++.|.+.+. .+...++.+.|.+|||||+|++.|.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 6799999999999887 56778999999999999999999998765
No 287
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.018 Score=46.23 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+-|.++||.|+||||+.+.+.+...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 4578999999999999999988765
No 288
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.20 E-value=0.033 Score=44.07 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 137 SRMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 137 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.+..++.+.+.+. ......|+++|++|+|||||.+.+..+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 44555555555432 22345678999999999999999987543
No 289
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.19 E-value=0.022 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++..+|+|.|..|+||||||+.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4467899999999999999999998763
No 290
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.18 E-value=0.21 Score=39.20 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=67.6
Q ss_pred hhhHHH-HHHHHHHhhhhHHHHhhhhhhccccc------------hhHHHHHhcCcccchHHHHHHHHHHHHHHHHHHhh
Q 038843 2 VESILT-VVLEVVKCLAPPAERQFSYLRSYNNN------------HAVDEAKRKGIEIEKKVEKWLDSVNNAIFEAEKFV 68 (283)
Q Consensus 2 ae~~~~-~v~~~~~~l~~~~~~~~~~~~~~~~~------------~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~daed~l 68 (283)
||.+++ ++|.+++.|...+.+.......++.. ..+++.+.-....+..-+.-+.++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 455554 67888888888888877766555544 56777776555555555777888899999999999
Q ss_pred hhHHHhhhhhccCcCcChhhHhHHHHHHHHHHHHHHHH
Q 038843 69 GDEAAANKQCFKGLCPNLKTRIEHNKEALRQLEAIVKL 106 (283)
Q Consensus 69 d~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~l~~l 106 (283)
++|..-. ..++...++.+++|+++.+.+...
T Consensus 83 ~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 83 EKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 8764321 234555667777887777777655
No 291
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.18 E-value=0.059 Score=46.52 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=37.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCC---C-CeEEEEEeCCccCHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKL---F-DQVIFAEVSQNQDIRKIQGE 204 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~i~~~ 204 (283)
..+.=|+|.+|+|||.|+.++.-....... . ..++|++-...|+...+.+-
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHH
Confidence 467889999999999999988765443222 2 45899999888887776543
No 292
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.18 E-value=0.078 Score=45.90 Aligned_cols=36 Identities=36% Similarity=0.354 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 140 STLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 140 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..++.++.++..+ .-+-+.|.+|+|||+||+.+.+.
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHH
Confidence 4445556655543 34568999999999999999863
No 293
>PRK06620 hypothetical protein; Validated
Probab=95.17 E-value=0.016 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.070 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.+-|+|++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 678999999999999999887654
No 294
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.055 Score=47.12 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=40.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
..+++=|+|+.|+||||||.+++-... ..-...+|++....+++..+..-.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~ 109 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLG 109 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHH
Confidence 347777999999999999999987765 334588999999999887765544
No 295
>PRK12377 putative replication protein; Provisional
Probab=95.17 E-value=0.043 Score=47.12 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
....+.++|.+|+|||+||..+.+.... ..-.++++++.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~ 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH
Confidence 3467899999999999999999998762 23335667654
No 296
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.15 E-value=0.014 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998775
No 297
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.15 E-value=0.13 Score=45.50 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHhc-CCCceE-EEEEecCCchhhHHHHHHHHhhh
Q 038843 135 FESRMSTLNDILGALK-NPDVNM-LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+++-+....++..+.. .++.+. +-++|++|+||||+|..+.+..-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 4566677788888887 444555 99999999999999999988754
No 298
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.14 E-value=0.017 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|.|.|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999987653
No 299
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.13 E-value=0.019 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998654
No 300
>PRK13768 GTPase; Provisional
Probab=95.12 E-value=0.039 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++.|.|.+|+||||++..+.....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5789999999999999988887654
No 301
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.12 E-value=0.021 Score=47.06 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...|+|.|+.|+||||+++.+.+...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999988654
No 302
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.12 E-value=0.016 Score=47.14 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEecCCchhhHHHHHHHH
Q 038843 156 MLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~ 176 (283)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 303
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.10 E-value=0.026 Score=50.26 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++++|++|+||||++..+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999988765
No 304
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.10 E-value=0.029 Score=56.00 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.3
Q ss_pred CCccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 133 APFESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.+|.+..++.|+++|. .....++.++|++|+||||+++.+....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347799999999998886 2355789999999999999999998754
No 305
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.09 E-value=0.019 Score=47.99 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=26.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEE
Confidence 456899999999999999999986543 23455554
No 306
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.09 E-value=0.017 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+|+|.+|+|||||.+.+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 307
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.09 E-value=0.017 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+|+++|..|+|||||.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998765
No 308
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.09 E-value=0.048 Score=48.48 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=38.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC---CC-CeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK---LF-DQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~i~~~i 205 (283)
..+++-|+|.+|+|||+|+.++.-...... .- ..++|++....|+.+.+.+..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 447888999999999999998765432211 11 468999999888877765433
No 309
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.08 E-value=0.015 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.|+|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998765
No 310
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.08 E-value=0.021 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
..+|+|.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
No 311
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.08 E-value=0.032 Score=45.39 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.6
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 142 LNDILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 142 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+..+..++.. .....|+|+|.+|+|||||.+.+...
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456665532 55577899999999999999998764
No 312
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.08 E-value=0.035 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+++|+.|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 55789999999999999999998654
No 313
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.08 E-value=0.017 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|.++|.+|+|||||...+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998764
No 314
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.07 E-value=0.019 Score=47.96 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=27.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~ 63 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFN 63 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEC
Confidence 456899999999999999999987543 334555553
No 315
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.018 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..-.++|+|.+|+|||||.+.+.--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997544
No 316
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.05 E-value=0.053 Score=48.80 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=39.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhc---CC-CCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENE---KL-FDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~~~wv~vs~~~~~~~i~~~i 205 (283)
..+++-|+|.+|+|||+|+.+++-..... .. -..++|++....|+.+.+.+..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia 181 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA 181 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHH
Confidence 34777899999999999999986443221 11 2468999999988887766643
No 317
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.05 E-value=0.23 Score=39.66 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHhcCCCce-EEEEEecCCchhhHHHHHHHHhh
Q 038843 137 SRMSTLNDILGALKNPDVN-MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|-+...+.|.+.+.++..+ .+-++|..|+||+++|..+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456667777777776654 57999999999999999987763
No 318
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.05 E-value=0.02 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=26.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..... ...+.+++
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~ 51 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLI 51 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEE
Confidence 346899999999999999999987543 23445554
No 319
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.02 Score=46.99 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.-+|||.|+..+||||||+.+..-
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~ 27 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRF 27 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHH
Confidence 358999999999999999988743
No 320
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.04 E-value=0.041 Score=50.12 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.-+|+|+|..|+|||||+..+.....
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998876
No 321
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.04 E-value=0.031 Score=48.45 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 137 SRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 137 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
|......+.+..+.....+.|.|.|..|+||||++..+.+.
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 44444444445455555678999999999999999987654
No 322
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.02 E-value=0.025 Score=46.10 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.|.|.+|+||||+|+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999997754
No 323
>PRK09354 recA recombinase A; Provisional
Probab=95.01 E-value=0.042 Score=49.37 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=35.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIR 199 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (283)
..+++-|+|.+|+|||||+.++..... ..=..++|++....++..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV 103 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH
Confidence 457888999999999999999887654 233567888887776653
No 324
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.01 E-value=0.023 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++++.|.+|+||||++..+.....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~ 24 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999987754
No 325
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.01 E-value=0.027 Score=56.04 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.++.|.+..++++.+++. . ...+-+.++|.+|+|||+||+.+.+..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 34457788888888877653 1 234678899999999999999998764
No 326
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.99 E-value=0.029 Score=45.66 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.....|+|+|.+|+|||||.+.+.++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34566799999999999999998864
No 327
>PRK01184 hypothetical protein; Provisional
Probab=94.99 E-value=0.019 Score=46.75 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.6
Q ss_pred eEEEEEecCCchhhHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPK 172 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~ 172 (283)
.+|+|+|++|+||||+++
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999987
No 328
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.99 E-value=0.018 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|.++|.+|+|||||.+.+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 329
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.98 E-value=0.02 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|.|-||+||||++..+..-..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La 26 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5899999999999999998877654
No 330
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.97 E-value=0.018 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|.|+|.+|+|||||.+.+.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999997654
No 331
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.96 E-value=0.02 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.|.++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999998765
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.96 E-value=0.022 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
...+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 457899999999999999999864
No 333
>COG4240 Predicted kinase [General function prediction only]
Probab=94.96 E-value=0.038 Score=46.35 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
.+.+-+++|+|+.|+|||||+..+++....+.. ..+...++
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSL 87 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSL 87 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeeh
Confidence 456789999999999999999999998764432 24444444
No 334
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.95 E-value=0.033 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
....|+|+|.+|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4566999999999999999999875
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.024 Score=46.00 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=26.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 59 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILI 59 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 456899999999999999999986532 23444444
No 336
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.023 Score=47.27 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=27.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 60 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFD 60 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEC
Confidence 456899999999999999999987543 345566654
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.92 E-value=0.025 Score=45.95 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||.+.+.....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 456999999999999999999986543
No 338
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.91 E-value=0.064 Score=40.84 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHHhc-------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALK-------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++|-.-..+.+++.+. .+.+-|++.+|..|+|||.+++.|.+..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4455444444444443 2456889999999999999998888773
No 339
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.90 E-value=0.024 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.|.|+|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998755
No 340
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.90 E-value=0.026 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|++.|-||+||||++..+..-..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHH
Confidence 578889999999999888876654
No 341
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.036 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++.++|.+|+||||++.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 342
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.024 Score=47.28 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 343
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.89 E-value=0.018 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.5
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999876
No 344
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.12 Score=43.05 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
...|+|=|+-|+||||.++.++...+.+
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~ 30 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEER 30 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999987743
No 345
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.87 E-value=0.024 Score=47.48 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~ 61 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYI 61 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE
Confidence 456899999999999999999997643 23455544
No 346
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.87 E-value=0.021 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998753
No 347
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.86 E-value=0.022 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998654
No 348
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.86 E-value=0.021 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
No 349
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.024 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 350
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.85 E-value=0.028 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|-||+||||++..+..-..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la 25 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALA 25 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999988877765
No 351
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.058 Score=45.98 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++-|.+-.++++.+... -+.++-+.++|++|.|||-||+.+.|+-.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 34556677777776666543 24678889999999999999999998743
No 352
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.85 E-value=0.063 Score=46.14 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=26.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
+.|+|+|-|||||||.+..+..-.... -..++-|--
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~--G~kVl~iGC 36 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM--GKKVLQIGC 36 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc--cceeeEecc
Confidence 579999999999999999998776532 234555543
No 353
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.024 Score=47.34 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=25.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
.+++|+|..|+|||||++.+..... ...+.+++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 56 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVL 56 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 8999999999999999999986543 23444544
No 354
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.85 E-value=0.039 Score=44.34 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 144 DILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 144 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+.+++.......|+++|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 4455554444567889999999999999999654
No 355
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.83 E-value=0.048 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
++|+|+|-||+||||+|..+..-...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~ 26 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAE 26 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999887653
No 356
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.82 E-value=0.025 Score=47.17 Aligned_cols=36 Identities=22% Similarity=0.069 Sum_probs=27.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~ 62 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIA 62 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEC
Confidence 446899999999999999999986542 345555553
No 357
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.81 E-value=0.025 Score=47.12 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=26.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 60 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRV 60 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 456899999999999999999987543 23455554
No 358
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.024 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 359
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.80 E-value=0.026 Score=46.41 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987643
No 360
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.80 E-value=0.025 Score=48.15 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=26.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~ 61 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILL 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEE
Confidence 456899999999999999999986543 23444544
No 361
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=0.75 Score=41.22 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-.+-+-++|+.|+|||++|..+....-
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 346688999999999999999877754
No 362
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.80 E-value=0.027 Score=47.39 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999986543
No 363
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.79 E-value=0.021 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|..|+|||||++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998654
No 364
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.04 Score=54.28 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=37.5
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++.||+.+++++++.|....-.--.++|-+|+|||+++.-+.....
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999843323335789999999998887777643
No 365
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.026 Score=48.00 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 366
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.78 E-value=0.027 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998754
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.78 E-value=0.056 Score=45.50 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
..+++.|.|.+|+|||+|+.++...-..+ .=..++|++...++ ..+.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~ 67 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM 67 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH
Confidence 45899999999999999999876544321 01356888876553 4444443
No 368
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.77 E-value=0.026 Score=46.80 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 369
>PRK02496 adk adenylate kinase; Provisional
Probab=94.77 E-value=0.026 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.|.|++|+||||+++.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 370
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.77 E-value=0.024 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998654
No 371
>PRK05973 replicative DNA helicase; Provisional
Probab=94.76 E-value=0.062 Score=45.74 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=30.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
+..++.|.|.+|+|||+|+.++...... .. ..+++++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~G-e~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-SG-RTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cC-CeEEEEEEeCC
Confidence 3468899999999999999998766542 22 34667776544
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.76 E-value=0.055 Score=50.21 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=27.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
.++++++|++|+||||++..+.........-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4699999999999999988887655411122344556553
No 373
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.76 E-value=0.027 Score=47.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34789999999999999999998754
No 374
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.76 E-value=0.027 Score=47.22 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~ 65 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFN 65 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEC
Confidence 456899999999999999999987543 235555553
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=94.76 E-value=0.064 Score=48.11 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.++|+.|+||||++..+.....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999998888876654
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.76 E-value=0.053 Score=46.16 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=34.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 203 (283)
..+++.|.|.+|+|||+|+.++..... ..-..++|++.... ..++.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~--~~~i~~ 66 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH--PVQVRR 66 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC--HHHHHH
Confidence 458999999999999999999765533 22456788887654 344444
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.75 E-value=0.03 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++.+.|++|+||||++..+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999987654
No 378
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.75 E-value=0.02 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+|+|.+|+|||||.+.+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999987653
No 379
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.75 E-value=0.022 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+++|.+|+|||||.+.+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998653
No 380
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.022 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~ 59 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRID 59 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEEC
Confidence 899999999999999999986543 335556554
No 381
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.74 E-value=0.023 Score=44.40 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 382
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.74 E-value=0.027 Score=47.46 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..-.. ...+.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~ 69 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSL 69 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEE
Confidence 457999999999999999999987543 33455554
No 383
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.73 E-value=0.024 Score=49.02 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++|+|.|-||+||||++..+.....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La 27 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYS 27 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 6899999999999999999988765
No 384
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.027 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998754
No 385
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.73 E-value=0.026 Score=44.67 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.6
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|+++|..|+|||||..++...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999998653
No 386
>PRK14528 adenylate kinase; Provisional
Probab=94.73 E-value=0.029 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.|.|.|++|+||||+++.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997654
No 387
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.19 Score=45.04 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=33.4
Q ss_pred ccc-cHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FES-RMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.| -+..++.+.+.+..++. +.+-++|+.|+||||+|..+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345 55566777777776654 566899999999999999987664
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.053 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|.+|+||||++..+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999998887643
No 389
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.72 E-value=0.05 Score=49.99 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+-+|+|.|..|+|||||++.+..-..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999965543
No 390
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.72 E-value=0.025 Score=44.44 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEecCCchhhHHHHHHHHhhh
Q 038843 159 IYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 159 I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.|++|+||||+|+.+.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998653
No 391
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.71 E-value=0.023 Score=45.01 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.-|+|+|.+|+|||||+..+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56889999999999999998654
No 392
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.71 E-value=0.084 Score=47.01 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.=..+....++.++..+ +.|.|.|.+|+||||+++++....
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH
Confidence 333445556677777543 468999999999999999997753
No 393
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.71 E-value=0.028 Score=47.73 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~ 60 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISV 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEE
Confidence 457999999999999999999986542 23455555
No 394
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.71 E-value=0.029 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998654
No 395
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.04 Score=52.94 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|..+.+++|-+..++.+..++.++.. +.+-++|..|+||||+|+.+.+..-
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44566788999999999999987655 4588999999999999999987643
No 396
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.038 Score=54.20 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+..++.+..++..+. .+.+-++|+.|+||||+|+.+....
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4456678899999999999998765 4567899999999999999997653
No 397
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.70 E-value=0.1 Score=44.23 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=27.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
..++.|.|..|+|||||+.++...... .. ..+++++...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~e~ 62 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVSTQL 62 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeCCC
Confidence 469999999999999998766555421 22 3456666443
No 398
>PRK12338 hypothetical protein; Provisional
Probab=94.69 E-value=0.031 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.+|.|.|.+|+||||+|..+....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5789999999999999999998774
No 399
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.69 E-value=0.063 Score=45.26 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=30.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
....+.|.|.+|+|||||+.++..... ..-...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 457899999999999999998765433 12346788887544
No 400
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.69 E-value=0.025 Score=44.54 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988754
No 401
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.68 E-value=0.027 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35689999999999999999998764
No 402
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.68 E-value=0.066 Score=48.19 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=38.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccCHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQDIRKIQGE 204 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~ 204 (283)
...++-|+|.+|+|||+|+.+++-...... .-..++|++....|..+.+.+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qi 177 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQI 177 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHH
Confidence 357888999999999999998875433111 1136899999998887766543
No 403
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.68 E-value=0.029 Score=47.05 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=27.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~ 60 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFD 60 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEC
Confidence 457999999999999999999886543 234555553
No 404
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.67 E-value=0.028 Score=48.32 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|+.|+|||||.+.++.-... -.+.++++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~ 62 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLD 62 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEEC
Confidence 4578999999999999999999875542 23445554
No 405
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.67 E-value=0.025 Score=44.40 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.6
Q ss_pred EEEEecCCchhhHHHHHHHH
Q 038843 157 LGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~ 176 (283)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999993
No 406
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.03 Score=47.00 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
+..+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~ 60 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVA 60 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEC
Confidence 457899999999999999999986542 345556553
No 407
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.67 E-value=0.045 Score=49.01 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.0
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHH
Q 038843 135 FESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEV 174 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v 174 (283)
+.+|..+..--++.|++++...|.+.|.+|.|||.||...
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 5567777788889999999999999999999999988654
No 408
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.66 E-value=0.08 Score=47.17 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=36.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|+|.+|+|||+|+.++........ .-..++|++....++...+..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ 149 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLA 149 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHH
Confidence 468899999999999999999876432111 113579999888777665433
No 409
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.65 E-value=0.025 Score=44.77 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.7
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 410
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.64 E-value=0.072 Score=45.62 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHHhcC--CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 141 TLNDILGALKN--PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 141 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
.+..+.++..+ .....+.++|.+|+|||+||..+.+..... -..++++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~ 135 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV 135 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH
Confidence 34444444432 233578899999999999999999986532 234566655
No 411
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.64 E-value=0.13 Score=49.01 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=51.9
Q ss_pred HHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE-EeCCcc-CHHHHHHHhCcEeEEeecchhHH
Q 038843 144 DILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA-EVSQNQ-DIRKIQGEIGCKILLRARSEDTL 219 (283)
Q Consensus 144 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~-~~~~i~~~i~s~iivTTR~~~v~ 219 (283)
.+++.|. -+......|+|.+|+|||||++.|.+.... .+-++.++| -|++-+ .+.++.+.+.+-||..|.+....
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 3556555 345678899999999999999999987642 233454444 444443 45556667777899999887764
No 412
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=94.61 E-value=0.026 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.++|.+|+|||||.+.+.+..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36799999999999999998764
No 413
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.61 E-value=0.036 Score=48.02 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++|+|.|-||+||||++..+..-..
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la 27 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFA 27 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999988877765
No 414
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.61 E-value=0.029 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 415
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.60 E-value=0.039 Score=41.53 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.9
Q ss_pred EEEEecCCchhhHHHHHHHHhhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|.+.|.||+||||++..+.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA 24 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988765
No 416
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=94.58 E-value=0.03 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.++|.+|+|||||.+.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999998764
No 417
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.57 E-value=0.024 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEecCCchhhHHHHHHHHhh
Q 038843 157 LGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|+|+|.+|+|||||.+.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998774
No 418
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.57 E-value=0.027 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+++|.+|+|||||.+.+.+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.57 E-value=0.063 Score=48.42 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=23.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
......|.|.|..|+||||+++.+.+..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3445889999999999999999887653
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.068 Score=49.35 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++++|..|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887653
No 421
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.55 E-value=0.064 Score=46.37 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=30.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
..+++.|.|.+|+|||+|+.++...... .=..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCC
Confidence 4588999999999999999998665431 1235677887643
No 422
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.55 E-value=0.031 Score=47.29 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|.|..|+|||||++.+.....
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999997643
No 423
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.032 Score=47.19 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999986643
No 424
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.032 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~ 68 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIF 68 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 446899999999999999999987543 33555554
No 425
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=94.54 E-value=0.036 Score=45.20 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.2
Q ss_pred cCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 150 KNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 150 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+...-|+|+|.+|+|||||.+.+.+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456678999999999999999999975
No 426
>PRK13973 thymidylate kinase; Provisional
Probab=94.54 E-value=0.17 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..|+|-|..|+||||+++.++.....
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~ 29 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRA 29 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999988753
No 427
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.54 E-value=0.06 Score=52.24 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=36.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
+-++.-++|++|.||||||..|.++.. |. ++=++.|..-+...+-..|
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Ys-VvEINASDeRt~~~v~~kI 372 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----YS-VVEINASDERTAPMVKEKI 372 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----ce-EEEecccccccHHHHHHHH
Confidence 347888999999999999999987643 32 4566777776666665555
No 428
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.54 E-value=0.039 Score=44.63 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.8
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
......|+|+|.+|+|||||...+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3456788999999999999999998763
No 429
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.53 E-value=0.072 Score=51.85 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=50.8
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
++.....+.|.+..++.|...+... +.+.++|.+|+||||+|+.+.+... ..+|+..+|..-+.. +...+++.+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np~~-~~~~~~~~v 99 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNPED-PNNPKIRTV 99 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCCCc-chHHHHHHH
Confidence 3445566788888888777766654 4688999999999999999987643 234677778665332 344444443
No 430
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.053 Score=52.19 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|.+...+.+.+++..+.. +.+-++|..|+||||+|+.+....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567788999999999999986654 557789999999999999987653
No 431
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.53 E-value=0.033 Score=46.15 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||.+.+.....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987643
No 432
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=94.53 E-value=0.027 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.|+|+|.+|+|||||...+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 433
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.53 E-value=0.07 Score=45.24 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=34.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
..+++.|.|.+|+|||+|+.++..... .+=..++|++..+. ...+.+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH
Confidence 458899999999999999999965432 12246788888655 34444443
No 434
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.51 E-value=0.037 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|+|.|..|+|||||.+.+.+...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3689999999999999999997654
No 435
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.51 E-value=0.03 Score=46.34 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 58 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLN 58 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEEC
Confidence 346899999999999999999986543 334555543
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.51 E-value=0.068 Score=50.21 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=28.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
..++++++|..|+||||++..+......+..-..+..++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 3479999999999999999999876643322223445554
No 437
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.033 Score=48.01 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 438
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.033 Score=47.46 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=27.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|.|..|+|||||++.+..... ...+.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 62 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIA 62 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEC
Confidence 457899999999999999999986543 234555553
No 439
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.51 E-value=0.16 Score=42.69 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=49.9
Q ss_pred HHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh-------CcEeEEeecc
Q 038843 145 ILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI-------GCKILLRARS 215 (283)
Q Consensus 145 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i-------~s~iivTTR~ 215 (283)
.++.|. =.....++|.|.+|+|||+|+..+.++.. -++.+++.+++.. .+.++.+.+ .+-+++.|-+
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 344444 12447889999999999999999998764 3455888887663 566666666 5567777777
Q ss_pred hhHH
Q 038843 216 EDTL 219 (283)
Q Consensus 216 ~~v~ 219 (283)
+..+
T Consensus 81 ~~~~ 84 (215)
T PF00006_consen 81 EPPA 84 (215)
T ss_dssp S-HH
T ss_pred hhHH
Confidence 6554
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.51 E-value=0.034 Score=46.31 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=26.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|.|..|+|||||++.+..... ...+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~ 59 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 456899999999999999999987643 23455554
No 441
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.51 E-value=0.034 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..|+|.|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998865
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.065 Score=48.70 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
+.++++++|+.|+||||++..+......+ . ..+.+++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaD 243 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTD 243 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCC
Confidence 46899999999999999999998765422 2 345566654
No 443
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.50 E-value=0.055 Score=43.71 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 144 DILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 144 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+++.+.. .....|.|.|+.|+|||||...+...
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhc
Confidence 35555654 66678899999999999999999865
No 444
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=0.99 Score=41.96 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCCCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+..+.||+.++..+.+|+. .+..+-+=|.|.+|.|||.+...++.+..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~ 200 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS 200 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh
Confidence 35568899999999999987 34667888999999999999999998865
No 445
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.081 Score=45.60 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
...-+.++|.+|+|||.||..+.+... +..+ .++++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH
Confidence 667789999999999999999999977 3333 3445554
No 446
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.49 E-value=0.034 Score=46.86 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=27.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||++.+..... ...+.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 67 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFE 67 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEEC
Confidence 457899999999999999999987543 234455543
No 447
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.48 E-value=0.031 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~ 59 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLF 59 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEE
Confidence 446899999999999999999986532 23455554
No 448
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.48 E-value=0.052 Score=44.12 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 144 DILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 144 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+.+.+......-|.++|.+|+|||+|+..+...
T Consensus 7 ~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~ 40 (182)
T PTZ00133 7 SAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLG 40 (182)
T ss_pred HHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Confidence 3444444444456889999999999999998654
No 449
>PRK07429 phosphoribulokinase; Provisional
Probab=94.48 E-value=0.038 Score=49.44 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..-+|+|.|..|+||||+++.+.....
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 4567999999999999999999987643
No 450
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.47 E-value=0.032 Score=48.98 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.0
Q ss_pred ceEEEEEecCCchhhHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
..+|.|.|+.|+||||+++.+.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999884
No 451
>PRK09183 transposase/IS protein; Provisional
Probab=94.46 E-value=0.048 Score=47.14 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+.|+|.+|+|||+||..+.+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35677999999999999999977643
No 452
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.46 E-value=0.034 Score=44.72 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+-|+|+|.+|+|||||++.+.+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999754
No 453
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.45 E-value=0.15 Score=43.26 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=46.5
Q ss_pred CCCccccHHHHHHHHH----HhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 132 YAPFESRMSTLNDILG----ALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
...++|.+...+.+++ ++......-|-++|.-|.||++|.+.+.+... ...-..+=|+-++-.++..+...+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~--~~glrLVEV~k~dl~~Lp~l~~~L 134 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA--DEGLRLVEVDKEDLATLPDLVELL 134 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH--hcCCeEEEEcHHHHhhHHHHHHHH
Confidence 4456777666665554 44455778899999999999999999998865 333333333333334455555544
No 454
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.44 E-value=0.035 Score=47.01 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998664
No 455
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.44 E-value=0.065 Score=46.88 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=50.3
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe-EEEEEeCCc
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ-VIFAEVSQN 195 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~ 195 (283)
|..+.++.|-+..+.-+.+.+.....++...+|++|.|||+-|..+....-..+-|.+ +.-.++|..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 4456678888888888888888888899999999999999999888776544345533 333444443
No 456
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.44 E-value=0.036 Score=46.16 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=26.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..... ...+.+++
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 59 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIII 59 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 456899999999999999999986543 23444544
No 457
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.44 E-value=0.048 Score=50.44 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|.++|.+|+||||++..+.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 458
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.43 E-value=0.028 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|.|+|.+|+|||||.+.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 459
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.43 E-value=0.057 Score=47.50 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+-+|.|.|.+|+||||+|..+.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455688999999999999999999775
No 460
>PRK06526 transposase; Provisional
Probab=94.43 E-value=0.038 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...-+.++|.+|+|||+||..+.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345689999999999999999987653
No 461
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.43 E-value=0.069 Score=51.89 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....++.|.+..++.+...+.... .+.++|++|+|||||++.+.+...
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC
Confidence 344557788877776666665543 555999999999999999997754
No 462
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.42 E-value=0.031 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+|+|.+|+|||||.+.+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988764
No 463
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.41 E-value=0.052 Score=48.70 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred EEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 157 LGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
+.+.|++|+||||+++.+.+.......+ .+.+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcc
Confidence 5789999999999999999876532222 2344444
No 464
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.41 E-value=0.034 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.-.|+|+|..|+|||||.+.+..-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 45689999999999999999998743
No 465
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.39 E-value=0.038 Score=45.66 Aligned_cols=36 Identities=31% Similarity=0.228 Sum_probs=27.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
+..+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~ 61 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFE 61 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEEC
Confidence 457899999999999999999987543 334555554
No 466
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.39 E-value=0.04 Score=44.44 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998754
No 467
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.39 E-value=0.03 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998765
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.38 E-value=0.038 Score=45.95 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 469
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.37 E-value=0.09 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe-EEEEEeCCccCHHHHHHHhCcEeE-Eeec
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ-VIFAEVSQNQDIRKIQGEIGCKIL-LRAR 214 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~s~ii-vTTR 214 (283)
...|.+.|..|+|||+|..+.....+ +.|.. ++=-++-...|...+.+..+.+|+ ++|.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~--~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG 73 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALK--DEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETG 73 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHH--hhCCeEEEeceeechhhHHHHHhCCCCeeEEeccC
Confidence 36899999999999999999999887 44644 343344444555555554677664 4555
No 470
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=94.37 E-value=0.075 Score=41.65 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.3
Q ss_pred hcCCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 149 LKNPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 149 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
|...+..+|.|.|..|+||+|||-.+-+-.-.
T Consensus 26 l~~qkGcviWiTGLSgSGKStlACaL~q~L~q 57 (207)
T KOG0635|consen 26 LLKQKGCVIWITGLSGSGKSTLACALSQALLQ 57 (207)
T ss_pred HhcCCCcEEEEeccCCCCchhHHHHHHHHHHh
Confidence 44567889999999999999999888766543
No 471
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.37 E-value=0.03 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
|+|+|..|+|||||.+.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999754
No 472
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.037 Score=47.14 Aligned_cols=35 Identities=31% Similarity=0.269 Sum_probs=26.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..... ...+.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 60 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFI 60 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEE
Confidence 456899999999999999999986543 23455554
No 473
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.36 E-value=0.037 Score=46.74 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~ 60 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLD 60 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEC
Confidence 456899999999999999999986543 234555553
No 474
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.36 E-value=0.039 Score=45.47 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=27.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..... ...+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 60 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWN 60 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEEC
Confidence 457899999999999999999987543 234555543
No 475
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.36 E-value=0.079 Score=43.96 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=30.1
Q ss_pred CCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 132 YAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+.++.|-+..+..+.=.... .+-+.+.|.+|+|||+||+.+-.-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 44567777666655544443 368899999999999999998654
No 476
>PRK10908 cell division protein FtsE; Provisional
Probab=94.36 E-value=0.038 Score=46.41 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=27.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..... ...+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 61 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWF 61 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 457899999999999999999986542 23455554
No 477
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.36 E-value=0.17 Score=44.01 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhh--cCCCCeEEEEEeCCcc-CHHHHHHHh-------CcEeEEeecchhHH
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAEN--EKLFDQVIFAEVSQNQ-DIRKIQGEI-------GCKILLRARSEDTL 219 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i-------~s~iivTTR~~~v~ 219 (283)
...+.++|.|-.|+|||+|+..+.++... +.+-+.++++-+++.. .+.++.+.+ .+-+++.|-++...
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 35578899999999999999998877541 1235788999997775 566777766 55666677766654
No 478
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.35 E-value=0.03 Score=44.18 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.1
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|+++|.+|+|||+|++.+.++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988653
No 479
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.35 E-value=0.039 Score=45.84 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=27.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+.-... ...+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~ 60 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFD 60 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEC
Confidence 457899999999999999999986542 235556554
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.037 Score=45.46 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 481
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.037 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998654
No 482
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.34 E-value=0.08 Score=48.20 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHhc---CCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 138 RMSTLNDILGALK---NPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 138 r~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..++.+++.+... ....++|+|+|..|+|||||...+....+.
T Consensus 186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4455666655432 235679999999999999999999988764
No 483
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.33 E-value=0.079 Score=49.28 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+|.++|.+|+||||++..+.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 484
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.33 E-value=0.032 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|-+|+||||+++.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998876543
No 485
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.33 E-value=0.038 Score=47.36 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999987643
No 486
>PRK06851 hypothetical protein; Provisional
Probab=94.32 E-value=0.096 Score=47.49 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=35.8
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccC
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQD 197 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 197 (283)
+..+++.|.|.+|+|||||++.+.+.... ..|+...+.|-+.+-.
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~-~g~~Ve~~~~~~d~~s 72 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLE-KGYDVEFLHCSSDNDS 72 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEcCCCCCc
Confidence 45689999999999999999999988753 3577777777665533
No 487
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.051 Score=43.68 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=26.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
-+.++|.+|+||+||.+.+|-+..+. .+.+||.
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 45789999999999999999887643 3566664
No 488
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.31 E-value=0.069 Score=48.12 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCCccccHHHHH---HHHHHhcCCC--ceEEEEEecCCchhhHHHHHHHHhhhhc
Q 038843 132 YAPFESRMSTLN---DILGALKNPD--VNMLGIYGMGGIRKTTLPKEVARKAENE 181 (283)
Q Consensus 132 ~~~~~gr~~~~~---~l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 181 (283)
..+++|..+..+ -+++++.++. .+.|-+.|++|.|||+||..+.......
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 346788765543 3666666654 5899999999999999999999987633
No 489
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.31 E-value=0.39 Score=43.24 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=51.2
Q ss_pred HHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh--------------Cc
Q 038843 144 DILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI--------------GC 207 (283)
Q Consensus 144 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i--------------~s 207 (283)
.+++.+. =...+.++|.|..|+|||+|++++.+... -+.++++-+++.. .+.+++.++ .+
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rt 221 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRT 221 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceE
Confidence 3555554 23456899999999999999999988643 4678888887664 355555553 55
Q ss_pred EeEEeecchhHH
Q 038843 208 KILLRARSEDTL 219 (283)
Q Consensus 208 ~iivTTR~~~v~ 219 (283)
-+|+.|-+..++
T Consensus 222 vlV~nts~~p~~ 233 (369)
T cd01134 222 VLIANTSNMPVA 233 (369)
T ss_pred EEEEECCCCCHH
Confidence 577777777765
No 490
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.31 E-value=0.038 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+++|+|..|+|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999875
No 491
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.043 Score=45.40 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.|-+.|.+|+||||+|+++..-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4677889999999999999987765
No 492
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.28 E-value=0.034 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.5
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.|+++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 493
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.28 E-value=0.055 Score=46.55 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|-.|+|||||++.+..-..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 457899999999999999999987665
No 494
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.28 E-value=0.053 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++++|+|..|+|||||+..+.....
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~ 26 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLK 26 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHH
Confidence 6899999999999999999988765
No 495
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=94.26 E-value=0.038 Score=43.38 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEecCCchhhHHHHHHHH
Q 038843 156 MLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~ 176 (283)
+|+|+|.+|+|||||.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 689999999999999999874
No 496
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.25 E-value=0.095 Score=46.87 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=41.3
Q ss_pred CCCccccHHHHH---HHHHHhcCC--CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe
Q 038843 132 YAPFESRMSTLN---DILGALKNP--DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ 186 (283)
Q Consensus 132 ~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 186 (283)
..+++|..+..+ -+++++.++ ..+.|.|+|++|.|||.||..+.+.....-+|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 445777665543 366666655 4589999999999999999999998876566743
No 497
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.25 E-value=0.04 Score=46.72 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45789999999999999999998654
No 498
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.25 E-value=0.043 Score=44.53 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
+..+++|.|..|+|||||++.+..... ...+.+++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~ 58 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILL 58 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE
Confidence 456899999999999999999987543 34444444
No 499
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.24 E-value=0.04 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 500
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.24 E-value=0.043 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+++|+|..|+|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999987643
Done!