Query 038843
Match_columns 283
No_of_seqs 155 out of 1858
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.6E-26 5.3E-31 218.9 11.2 139 136-275 131-344 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 3.5E-23 1.2E-27 211.6 10.0 150 129-281 120-340 (1249)
3 1vt4_I APAF-1 related killer D 99.8 6.2E-21 2.1E-25 187.3 11.8 139 135-281 130-349 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 8.1E-20 2.8E-24 174.1 13.8 149 130-281 121-340 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.1 5.7E-11 2E-15 88.7 5.7 68 9-76 3-83 (115)
6 2fna_A Conserved hypothetical 98.8 6.4E-08 2.2E-12 85.4 13.2 46 129-178 9-54 (357)
7 1njg_A DNA polymerase III subu 98.7 4.4E-07 1.5E-11 75.1 14.4 52 128-179 18-70 (250)
8 2chg_A Replication factor C sm 98.7 3.9E-07 1.3E-11 74.5 13.4 50 129-178 13-62 (226)
9 1sxj_B Activator 1 37 kDa subu 98.3 6.9E-06 2.4E-10 71.3 11.5 50 129-178 17-66 (323)
10 2qen_A Walker-type ATPase; unk 98.2 1.4E-06 4.8E-11 76.5 5.8 58 128-194 7-64 (350)
11 2qby_A CDC6 homolog 1, cell di 98.2 4.3E-06 1.5E-10 74.3 8.0 62 132-193 19-85 (386)
12 1iqp_A RFCS; clamp loader, ext 98.1 1.3E-05 4.3E-10 69.8 10.4 50 129-178 21-70 (327)
13 1jbk_A CLPB protein; beta barr 98.1 4.9E-06 1.7E-10 66.2 6.5 51 129-179 18-68 (195)
14 2qby_B CDC6 homolog 3, cell di 98.0 8E-06 2.7E-10 72.8 6.9 62 133-194 20-91 (384)
15 1w5s_A Origin recognition comp 98.0 8.3E-06 2.8E-10 73.4 6.9 63 133-195 22-97 (412)
16 2p65_A Hypothetical protein PF 98.0 7.4E-06 2.5E-10 64.9 5.8 51 129-179 18-68 (187)
17 2v1u_A Cell division control p 97.9 1.7E-05 5.9E-10 70.5 7.8 66 132-197 18-91 (387)
18 1fnn_A CDC6P, cell division co 97.9 2.9E-05 9.9E-10 69.1 9.1 65 133-198 17-87 (389)
19 1hqc_A RUVB; extended AAA-ATPa 97.9 0.0003 1E-08 61.1 14.3 49 130-178 9-62 (324)
20 2chq_A Replication factor C sm 97.8 9.3E-05 3.2E-09 63.9 10.3 50 129-178 13-62 (319)
21 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.0012 4E-08 55.3 13.1 49 130-178 3-63 (262)
22 3bos_A Putative DNA replicatio 97.5 0.00018 6.1E-09 59.3 7.1 49 131-179 26-77 (242)
23 3te6_A Regulatory protein SIR3 97.4 0.00029 9.9E-09 61.5 7.6 45 135-179 22-70 (318)
24 3h4m_A Proteasome-activating n 97.4 0.00014 4.9E-09 62.0 5.1 52 127-178 11-75 (285)
25 1sxj_D Activator 1 41 kDa subu 97.4 0.00015 5.3E-09 63.6 5.0 50 129-178 33-82 (353)
26 3pxg_A Negative regulator of g 97.4 0.00023 7.9E-09 65.6 6.2 48 131-178 178-225 (468)
27 4b4t_H 26S protease regulatory 97.3 0.0028 9.7E-08 57.8 12.4 50 130-179 206-268 (467)
28 4b4t_J 26S protease regulatory 97.2 0.0033 1.1E-07 56.4 12.0 52 128-179 143-207 (405)
29 3b9p_A CG5977-PA, isoform A; A 97.2 0.0004 1.4E-08 59.6 5.9 51 128-178 16-78 (297)
30 1jr3_A DNA polymerase III subu 97.2 0.00046 1.6E-08 61.0 6.3 51 129-179 12-63 (373)
31 1sxj_A Activator 1 95 kDa subu 97.2 0.00037 1.3E-08 64.9 5.8 51 128-178 34-101 (516)
32 3n70_A Transport activator; si 97.2 0.00031 1.1E-08 53.8 4.3 45 134-178 2-48 (145)
33 1sxj_E Activator 1 40 kDa subu 97.2 0.0003 1E-08 61.9 4.6 49 129-177 10-59 (354)
34 3pfi_A Holliday junction ATP-d 97.1 0.00044 1.5E-08 60.5 5.4 49 130-178 26-79 (338)
35 3ec2_A DNA replication protein 97.1 0.00057 2E-08 54.1 5.3 41 139-179 20-63 (180)
36 2w58_A DNAI, primosome compone 97.1 0.0015 5.1E-08 52.6 7.6 50 141-192 37-90 (202)
37 3cf0_A Transitional endoplasmi 97.1 0.00065 2.2E-08 58.7 5.5 51 128-178 10-73 (301)
38 1rz3_A Hypothetical protein rb 97.1 0.00066 2.2E-08 55.0 5.2 42 138-179 3-47 (201)
39 3syl_A Protein CBBX; photosynt 97.0 0.001 3.5E-08 57.2 6.6 46 134-179 32-92 (309)
40 3d8b_A Fidgetin-like protein 1 97.0 0.00081 2.8E-08 59.6 6.0 50 129-178 80-141 (357)
41 3eie_A Vacuolar protein sortin 97.0 0.00098 3.4E-08 58.1 6.3 53 126-178 11-75 (322)
42 1sxj_C Activator 1 40 kDa subu 97.0 0.00071 2.4E-08 59.4 5.4 50 129-178 21-70 (340)
43 3pvs_A Replication-associated 97.0 0.00051 1.8E-08 62.8 4.6 51 129-179 22-75 (447)
44 3pxi_A Negative regulator of g 97.0 0.00081 2.8E-08 65.6 6.2 48 131-178 178-225 (758)
45 1qvr_A CLPB protein; coiled co 97.0 0.00062 2.1E-08 67.4 5.3 49 130-178 167-215 (854)
46 3c8u_A Fructokinase; YP_612366 97.0 0.00089 3E-08 54.5 5.4 40 140-179 6-47 (208)
47 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0012 4.1E-08 64.4 6.5 48 131-178 184-231 (758)
48 3uk6_A RUVB-like 2; hexameric 96.9 0.00096 3.3E-08 59.0 5.3 48 132-179 43-95 (368)
49 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0013 4.5E-08 57.4 5.8 51 128-178 7-69 (322)
50 1lv7_A FTSH; alpha/beta domain 96.9 0.00096 3.3E-08 56.0 4.7 50 129-178 8-69 (257)
51 3u61_B DNA polymerase accessor 96.8 0.0016 5.4E-08 56.6 5.9 51 128-178 21-72 (324)
52 3lw7_A Adenylate kinase relate 96.8 0.00068 2.3E-08 52.8 2.8 20 155-174 2-21 (179)
53 3vfd_A Spastin; ATPase, microt 96.8 0.0018 6.2E-08 57.9 6.0 51 128-178 110-172 (389)
54 1qhx_A CPT, protein (chloramph 96.7 0.0009 3.1E-08 52.7 3.5 24 155-178 4-27 (178)
55 3co5_A Putative two-component 96.7 0.0004 1.4E-08 53.1 1.0 44 134-177 5-50 (143)
56 3kb2_A SPBC2 prophage-derived 96.7 0.00098 3.4E-08 52.0 3.3 24 155-178 2-25 (173)
57 2qp9_X Vacuolar protein sortin 96.7 0.0019 6.6E-08 57.1 5.5 50 129-178 47-108 (355)
58 1zp6_A Hypothetical protein AT 96.7 0.0012 3.9E-08 52.7 3.7 25 153-177 8-32 (191)
59 2x8a_A Nuclear valosin-contain 96.6 0.0021 7.3E-08 54.7 5.2 50 129-178 6-68 (274)
60 1ly1_A Polynucleotide kinase; 96.6 0.0012 4.2E-08 51.8 3.4 22 155-176 3-24 (181)
61 1ixz_A ATP-dependent metallopr 96.6 0.0028 9.6E-08 53.0 5.8 49 129-177 12-72 (254)
62 1in4_A RUVB, holliday junction 96.6 0.0013 4.3E-08 57.8 3.8 48 131-178 23-75 (334)
63 2r62_A Cell division protease 96.6 0.00094 3.2E-08 56.4 2.8 49 131-179 9-69 (268)
64 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.5E-08 53.0 3.5 26 153-178 24-49 (199)
65 4b4t_M 26S protease regulatory 96.6 0.0027 9.3E-08 57.6 5.9 52 128-179 176-240 (434)
66 2zan_A Vacuolar protein sortin 96.6 0.0028 9.6E-08 57.8 6.1 51 128-178 129-191 (444)
67 2bjv_A PSP operon transcriptio 96.6 0.0016 5.6E-08 54.8 4.1 47 132-178 5-53 (265)
68 2hf9_A Probable hydrogenase ni 96.6 0.0022 7.4E-08 52.5 4.8 38 141-178 25-62 (226)
69 3uie_A Adenylyl-sulfate kinase 96.6 0.0015 5.2E-08 52.7 3.7 29 151-179 22-50 (200)
70 1ofh_A ATP-dependent HSL prote 96.5 0.0019 6.5E-08 55.4 4.5 45 134-178 16-74 (310)
71 1kgd_A CASK, peripheral plasma 96.5 0.0014 4.9E-08 52.0 3.4 25 154-178 5-29 (180)
72 1d2n_A N-ethylmaleimide-sensit 96.5 0.0035 1.2E-07 53.0 5.9 45 134-178 34-88 (272)
73 1g8p_A Magnesium-chelatase 38 96.5 0.0016 5.6E-08 56.9 3.9 49 130-178 21-69 (350)
74 2wsm_A Hydrogenase expression/ 96.5 0.0017 5.7E-08 53.0 3.6 41 138-178 14-54 (221)
75 1kag_A SKI, shikimate kinase I 96.5 0.0012 4.2E-08 51.6 2.7 24 155-178 5-28 (173)
76 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.4E-08 51.6 3.4 25 154-178 5-29 (185)
77 4eun_A Thermoresistant glucoki 96.5 0.0017 5.7E-08 52.4 3.5 28 151-178 26-53 (200)
78 2rhm_A Putative kinase; P-loop 96.5 0.0021 7.2E-08 51.1 4.0 25 154-178 5-29 (193)
79 1nks_A Adenylate kinase; therm 96.5 0.0019 6.4E-08 51.3 3.7 25 155-179 2-26 (194)
80 4b4t_K 26S protease regulatory 96.5 0.0032 1.1E-07 57.1 5.5 49 131-179 170-231 (428)
81 1iy2_A ATP-dependent metallopr 96.4 0.0041 1.4E-07 52.8 5.9 50 128-177 35-96 (278)
82 3t61_A Gluconokinase; PSI-biol 96.4 0.0015 5E-08 52.8 2.9 25 154-178 18-42 (202)
83 4b4t_L 26S protease subunit RP 96.4 0.0043 1.5E-07 56.4 6.1 50 130-179 178-240 (437)
84 1knq_A Gluconate kinase; ALFA/ 96.4 0.0024 8.2E-08 50.1 3.9 25 154-178 8-32 (175)
85 2qor_A Guanylate kinase; phosp 96.4 0.0017 5.8E-08 52.6 3.1 26 153-178 11-36 (204)
86 1odf_A YGR205W, hypothetical 3 96.4 0.004 1.4E-07 53.5 5.6 28 152-179 29-56 (290)
87 3asz_A Uridine kinase; cytidin 96.4 0.0023 7.7E-08 51.9 3.7 28 152-179 4-31 (211)
88 3iij_A Coilin-interacting nucl 96.4 0.0019 6.4E-08 51.0 3.1 25 154-178 11-35 (180)
89 1l8q_A Chromosomal replication 96.4 0.0043 1.5E-07 53.9 5.7 38 141-178 22-61 (324)
90 3tr0_A Guanylate kinase, GMP k 96.4 0.0022 7.6E-08 51.5 3.5 24 154-177 7-30 (205)
91 1kht_A Adenylate kinase; phosp 96.4 0.0021 7.2E-08 50.9 3.4 25 155-179 4-28 (192)
92 1gvn_B Zeta; postsegregational 96.3 0.0039 1.3E-07 53.5 5.2 26 153-178 32-57 (287)
93 1uf9_A TT1252 protein; P-loop, 96.3 0.0026 8.8E-08 51.0 3.8 26 152-177 6-31 (203)
94 2kjq_A DNAA-related protein; s 96.3 0.0034 1.2E-07 48.3 4.4 34 146-179 28-61 (149)
95 2cvh_A DNA repair and recombin 96.3 0.0054 1.8E-07 49.7 5.8 45 153-202 19-63 (220)
96 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0044 1.5E-07 54.7 5.4 43 137-179 3-49 (359)
97 2yvu_A Probable adenylyl-sulfa 96.3 0.003 1E-07 50.1 4.1 28 152-179 11-38 (186)
98 2j41_A Guanylate kinase; GMP, 96.3 0.0024 8.3E-08 51.3 3.6 25 154-178 6-30 (207)
99 3tau_A Guanylate kinase, GMP k 96.3 0.0024 8.3E-08 51.9 3.5 27 152-178 6-32 (208)
100 2c95_A Adenylate kinase 1; tra 96.3 0.0028 9.4E-08 50.5 3.8 26 153-178 8-33 (196)
101 2ze6_A Isopentenyl transferase 96.3 0.0024 8.1E-08 53.7 3.5 24 155-178 2-25 (253)
102 1zuh_A Shikimate kinase; alpha 96.3 0.0023 8E-08 49.9 3.2 27 153-179 6-32 (168)
103 2jaq_A Deoxyguanosine kinase; 96.3 0.0023 7.9E-08 51.3 3.3 24 156-179 2-25 (205)
104 1tev_A UMP-CMP kinase; ploop, 96.3 0.0026 8.8E-08 50.5 3.5 25 154-178 3-27 (196)
105 2bdt_A BH3686; alpha-beta prot 96.3 0.0025 8.4E-08 50.8 3.3 22 155-176 3-24 (189)
106 1n0w_A DNA repair protein RAD5 96.3 0.0089 3.1E-07 49.2 6.9 48 153-200 23-74 (243)
107 3fwy_A Light-independent proto 96.3 0.0024 8.1E-08 55.6 3.4 28 152-179 46-73 (314)
108 1via_A Shikimate kinase; struc 96.3 0.0021 7.3E-08 50.5 2.8 24 155-178 5-28 (175)
109 2qt1_A Nicotinamide riboside k 96.2 0.0029 1E-07 51.1 3.6 25 153-177 20-44 (207)
110 1ukz_A Uridylate kinase; trans 96.2 0.0033 1.1E-07 50.6 3.9 27 152-178 13-39 (203)
111 3a00_A Guanylate kinase, GMP k 96.2 0.0022 7.7E-08 51.1 2.8 24 155-178 2-25 (186)
112 4fcw_A Chaperone protein CLPB; 96.2 0.0057 1.9E-07 52.5 5.6 44 135-178 19-71 (311)
113 1xjc_A MOBB protein homolog; s 96.2 0.0031 1.1E-07 49.7 3.5 27 153-179 3-29 (169)
114 2if2_A Dephospho-COA kinase; a 96.2 0.0028 9.7E-08 51.0 3.3 22 155-176 2-23 (204)
115 2iyv_A Shikimate kinase, SK; t 96.2 0.0023 7.9E-08 50.6 2.7 24 155-178 3-26 (184)
116 2bwj_A Adenylate kinase 5; pho 96.2 0.0031 1.1E-07 50.3 3.6 25 154-178 12-36 (199)
117 4gp7_A Metallophosphoesterase; 96.2 0.0023 7.8E-08 50.4 2.6 23 153-175 8-30 (171)
118 2plr_A DTMP kinase, probable t 96.2 0.0035 1.2E-07 50.5 3.8 26 154-179 4-29 (213)
119 1cke_A CK, MSSA, protein (cyti 96.2 0.0028 9.7E-08 51.8 3.3 24 155-178 6-29 (227)
120 2vli_A Antibiotic resistance p 96.2 0.0025 8.5E-08 50.2 2.8 25 154-178 5-29 (183)
121 1y63_A LMAJ004144AAA protein; 96.2 0.0032 1.1E-07 50.0 3.5 25 153-177 9-33 (184)
122 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0033 1.1E-07 53.0 3.7 24 154-177 4-27 (260)
123 4b4t_I 26S protease regulatory 96.2 0.0058 2E-07 55.2 5.4 50 130-179 179-241 (437)
124 2c9o_A RUVB-like 1; hexameric 96.1 0.0056 1.9E-07 56.0 5.4 48 132-179 36-88 (456)
125 1lvg_A Guanylate kinase, GMP k 96.1 0.0026 8.8E-08 51.4 2.7 25 154-178 4-28 (198)
126 1qf9_A UMP/CMP kinase, protein 96.1 0.0039 1.3E-07 49.4 3.7 25 154-178 6-30 (194)
127 3cm0_A Adenylate kinase; ATP-b 96.1 0.0036 1.2E-07 49.5 3.5 25 154-178 4-28 (186)
128 1uj2_A Uridine-cytidine kinase 96.1 0.0036 1.2E-07 52.4 3.6 27 152-178 20-46 (252)
129 1e6c_A Shikimate kinase; phosp 96.1 0.0029 1E-07 49.3 2.8 24 155-178 3-26 (173)
130 2p5t_B PEZT; postsegregational 96.1 0.0055 1.9E-07 51.4 4.7 26 153-178 31-56 (253)
131 1aky_A Adenylate kinase; ATP:A 96.1 0.0038 1.3E-07 51.0 3.5 26 153-178 3-28 (220)
132 2z4s_A Chromosomal replication 96.1 0.012 4E-07 53.7 7.1 39 141-179 116-155 (440)
133 1a5t_A Delta prime, HOLB; zinc 96.0 0.093 3.2E-06 45.7 12.7 42 138-179 7-49 (334)
134 1ojl_A Transcriptional regulat 96.0 0.0051 1.8E-07 53.1 4.5 45 134-178 3-49 (304)
135 1ye8_A Protein THEP1, hypothet 96.0 0.0036 1.2E-07 49.7 3.2 24 156-179 2-25 (178)
136 2bbw_A Adenylate kinase 4, AK4 96.0 0.0036 1.2E-07 52.2 3.3 26 153-178 26-51 (246)
137 1nn5_A Similar to deoxythymidy 96.0 0.0047 1.6E-07 49.9 3.9 32 154-186 9-40 (215)
138 4a74_A DNA repair and recombin 96.0 0.016 5.5E-07 47.2 7.1 45 153-197 24-72 (231)
139 2wwf_A Thymidilate kinase, put 96.0 0.0046 1.6E-07 49.9 3.7 32 154-186 10-41 (212)
140 3hu3_A Transitional endoplasmi 96.0 0.0084 2.9E-07 55.4 5.9 48 131-178 202-262 (489)
141 1jjv_A Dephospho-COA kinase; P 96.0 0.0035 1.2E-07 50.6 2.9 22 155-176 3-24 (206)
142 2cdn_A Adenylate kinase; phosp 96.0 0.0048 1.7E-07 49.6 3.8 25 154-178 20-44 (201)
143 3ney_A 55 kDa erythrocyte memb 96.0 0.0045 1.5E-07 50.1 3.5 26 153-178 18-43 (197)
144 2pt5_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 48.3 3.2 23 156-178 2-24 (168)
145 2r44_A Uncharacterized protein 96.0 0.0051 1.7E-07 53.5 4.1 44 133-178 27-70 (331)
146 1gtv_A TMK, thymidylate kinase 96.0 0.0027 9.3E-08 51.4 2.2 24 156-179 2-25 (214)
147 3aez_A Pantothenate kinase; tr 96.0 0.0043 1.5E-07 53.9 3.5 28 152-179 88-115 (312)
148 2pbr_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 49.2 3.3 23 156-178 2-24 (195)
149 1zd8_A GTP:AMP phosphotransfer 95.9 0.0047 1.6E-07 50.7 3.5 25 154-178 7-31 (227)
150 4e22_A Cytidylate kinase; P-lo 95.9 0.0049 1.7E-07 51.7 3.6 25 152-176 25-49 (252)
151 1ex7_A Guanylate kinase; subst 95.9 0.004 1.4E-07 49.9 2.9 24 155-178 2-25 (186)
152 1znw_A Guanylate kinase, GMP k 95.9 0.0046 1.6E-07 50.1 3.3 26 153-178 19-44 (207)
153 2jeo_A Uridine-cytidine kinase 95.9 0.0054 1.8E-07 51.1 3.7 26 153-178 24-49 (245)
154 3t15_A Ribulose bisphosphate c 95.9 0.0066 2.2E-07 52.1 4.3 26 153-178 35-60 (293)
155 3hws_A ATP-dependent CLP prote 95.9 0.0096 3.3E-07 52.6 5.5 44 135-178 17-75 (363)
156 1zak_A Adenylate kinase; ATP:A 95.9 0.0052 1.8E-07 50.2 3.5 26 154-179 5-30 (222)
157 3tlx_A Adenylate kinase 2; str 95.9 0.01 3.6E-07 49.4 5.4 27 152-178 27-53 (243)
158 1z6g_A Guanylate kinase; struc 95.9 0.0043 1.5E-07 50.9 3.0 26 153-178 22-47 (218)
159 1rj9_A FTSY, signal recognitio 95.8 0.0058 2E-07 52.9 3.6 27 153-179 101-127 (304)
160 2v54_A DTMP kinase, thymidylat 95.8 0.0058 2E-07 49.0 3.4 25 154-178 4-28 (204)
161 2grj_A Dephospho-COA kinase; T 95.8 0.0057 1.9E-07 49.2 3.3 25 153-177 11-35 (192)
162 3umf_A Adenylate kinase; rossm 95.8 0.0068 2.3E-07 49.8 3.8 28 152-179 27-54 (217)
163 2f1r_A Molybdopterin-guanine d 95.8 0.0064 2.2E-07 48.0 3.5 26 155-180 3-28 (171)
164 3p32_A Probable GTPase RV1496/ 95.8 0.012 4E-07 52.0 5.6 37 141-177 64-102 (355)
165 3fb4_A Adenylate kinase; psych 95.8 0.0057 1.9E-07 49.7 3.3 23 156-178 2-24 (216)
166 2z43_A DNA repair and recombin 95.7 0.022 7.4E-07 49.6 7.2 51 153-203 106-160 (324)
167 1m7g_A Adenylylsulfate kinase; 95.7 0.007 2.4E-07 49.1 3.8 28 152-179 23-50 (211)
168 2z0h_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 48.6 3.3 24 156-179 2-25 (197)
169 2pez_A Bifunctional 3'-phospho 95.7 0.0068 2.3E-07 47.7 3.5 27 153-179 4-30 (179)
170 3tqc_A Pantothenate kinase; bi 95.7 0.0086 2.9E-07 52.2 4.5 27 153-179 91-117 (321)
171 2px0_A Flagellar biosynthesis 95.7 0.012 4.1E-07 50.7 5.4 28 153-180 104-131 (296)
172 1s96_A Guanylate kinase, GMP k 95.7 0.0064 2.2E-07 50.0 3.4 26 153-178 15-40 (219)
173 2ce7_A Cell division protein F 95.7 0.013 4.4E-07 53.9 5.7 48 131-178 14-73 (476)
174 1vht_A Dephospho-COA kinase; s 95.7 0.0073 2.5E-07 49.1 3.7 23 154-176 4-26 (218)
175 3ice_A Transcription terminati 95.7 0.033 1.1E-06 49.7 8.0 76 143-219 162-240 (422)
176 1htw_A HI0065; nucleotide-bind 95.7 0.0075 2.6E-07 46.9 3.5 27 152-178 31-57 (158)
177 3dl0_A Adenylate kinase; phosp 95.6 0.0067 2.3E-07 49.3 3.3 23 156-178 2-24 (216)
178 2f6r_A COA synthase, bifunctio 95.6 0.0077 2.6E-07 51.4 3.6 23 153-175 74-96 (281)
179 2ehv_A Hypothetical protein PH 95.6 0.007 2.4E-07 50.1 3.2 24 153-176 29-52 (251)
180 1sq5_A Pantothenate kinase; P- 95.5 0.0089 3E-07 51.7 3.9 27 152-178 78-104 (308)
181 1v5w_A DMC1, meiotic recombina 95.5 0.033 1.1E-06 48.9 7.6 51 153-203 121-175 (343)
182 2gno_A DNA polymerase III, gam 95.5 0.054 1.9E-06 46.7 8.8 59 139-198 3-64 (305)
183 1um8_A ATP-dependent CLP prote 95.5 0.015 5.1E-07 51.6 5.3 25 154-178 72-96 (376)
184 2i1q_A DNA repair and recombin 95.5 0.028 9.5E-07 48.7 6.9 51 153-203 97-161 (322)
185 1np6_A Molybdopterin-guanine d 95.5 0.0094 3.2E-07 47.1 3.5 26 154-179 6-31 (174)
186 3lnc_A Guanylate kinase, GMP k 95.5 0.0055 1.9E-07 50.5 2.3 23 153-175 26-48 (231)
187 2dhr_A FTSH; AAA+ protein, hex 95.5 0.02 6.8E-07 53.0 6.2 50 128-177 26-87 (499)
188 3nwj_A ATSK2; P loop, shikimat 95.5 0.0072 2.4E-07 50.8 2.9 25 154-178 48-72 (250)
189 1pzn_A RAD51, DNA repair and r 95.5 0.021 7.1E-07 50.3 6.0 46 153-198 130-179 (349)
190 3ake_A Cytidylate kinase; CMP 95.5 0.0082 2.8E-07 48.2 3.2 24 155-178 3-26 (208)
191 1a7j_A Phosphoribulokinase; tr 95.4 0.0061 2.1E-07 52.4 2.4 27 152-178 3-29 (290)
192 2i3b_A HCR-ntpase, human cance 95.4 0.008 2.7E-07 48.2 3.0 25 155-179 2-26 (189)
193 1e4v_A Adenylate kinase; trans 95.4 0.0098 3.3E-07 48.3 3.5 23 156-178 2-24 (214)
194 3be4_A Adenylate kinase; malar 95.4 0.0083 2.8E-07 48.9 3.1 24 155-178 6-29 (217)
195 3tif_A Uncharacterized ABC tra 95.4 0.0088 3E-07 49.7 3.2 36 153-191 30-65 (235)
196 3b9q_A Chloroplast SRP recepto 95.4 0.011 3.6E-07 51.2 3.8 27 153-179 99-125 (302)
197 3b85_A Phosphate starvation-in 95.4 0.0079 2.7E-07 49.0 2.8 24 154-177 22-45 (208)
198 2onk_A Molybdate/tungstate ABC 95.4 0.0089 3.1E-07 49.8 3.2 24 155-178 25-48 (240)
199 1ypw_A Transitional endoplasmi 95.4 0.0065 2.2E-07 59.6 2.7 47 132-178 203-262 (806)
200 2zr9_A Protein RECA, recombina 95.4 0.022 7.5E-07 50.2 5.8 44 153-198 60-103 (349)
201 3hr8_A Protein RECA; alpha and 95.3 0.029 9.9E-07 49.6 6.5 50 153-205 60-109 (356)
202 2dr3_A UPF0273 protein PH0284; 95.3 0.02 6.9E-07 47.1 5.3 41 153-195 22-62 (247)
203 2pcj_A ABC transporter, lipopr 95.3 0.0088 3E-07 49.3 3.0 35 153-190 29-63 (224)
204 3bh0_A DNAB-like replicative h 95.3 0.034 1.2E-06 48.2 6.9 50 141-194 57-106 (315)
205 3r20_A Cytidylate kinase; stru 95.3 0.01 3.5E-07 49.2 3.4 25 154-178 9-33 (233)
206 2xb4_A Adenylate kinase; ATP-b 95.3 0.01 3.4E-07 48.7 3.3 23 156-178 2-24 (223)
207 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.016 5.5E-07 47.1 4.4 39 154-194 23-61 (235)
208 3d3q_A TRNA delta(2)-isopenten 95.3 0.011 3.6E-07 52.0 3.4 24 155-178 8-31 (340)
209 1ak2_A Adenylate kinase isoenz 95.3 0.012 4.2E-07 48.5 3.7 26 154-179 16-41 (233)
210 3e70_C DPA, signal recognition 95.3 0.015 5E-07 50.9 4.3 28 152-179 127-154 (328)
211 1yrb_A ATP(GTP)binding protein 95.2 0.019 6.6E-07 47.8 4.9 27 153-179 13-39 (262)
212 3upu_A ATP-dependent DNA helic 95.2 0.027 9.4E-07 51.4 6.3 40 140-180 32-71 (459)
213 1ltq_A Polynucleotide kinase; 95.2 0.011 3.8E-07 50.6 3.3 23 155-177 3-25 (301)
214 2cbz_A Multidrug resistance-as 95.2 0.011 3.9E-07 49.1 3.2 26 153-178 30-55 (237)
215 1u94_A RECA protein, recombina 95.1 0.026 8.9E-07 49.9 5.6 45 153-199 62-106 (356)
216 1oix_A RAS-related protein RAB 95.1 0.013 4.4E-07 46.6 3.3 25 154-178 29-53 (191)
217 4eaq_A DTMP kinase, thymidylat 95.1 0.026 8.7E-07 46.6 5.2 27 153-179 25-51 (229)
218 2d2e_A SUFC protein; ABC-ATPas 95.1 0.011 3.8E-07 49.5 3.0 25 153-177 28-52 (250)
219 1vma_A Cell division protein F 95.1 0.016 5.6E-07 50.1 4.2 27 153-179 103-129 (306)
220 1b0u_A Histidine permease; ABC 95.1 0.012 4.1E-07 49.7 3.2 35 153-190 31-65 (262)
221 2qgz_A Helicase loader, putati 95.1 0.028 9.7E-07 48.6 5.7 41 139-179 134-177 (308)
222 3k1j_A LON protease, ATP-depen 95.1 0.012 4E-07 55.9 3.4 48 129-178 37-84 (604)
223 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.014 4.7E-07 54.1 3.8 43 134-178 23-65 (500)
224 3gfo_A Cobalt import ATP-bindi 95.1 0.011 3.7E-07 50.4 2.8 35 153-190 33-67 (275)
225 3zvl_A Bifunctional polynucleo 95.1 0.012 4.1E-07 53.2 3.3 28 151-178 255-282 (416)
226 2og2_A Putative signal recogni 95.1 0.015 5.1E-07 51.5 3.8 27 153-179 156-182 (359)
227 3end_A Light-independent proto 95.1 0.017 5.9E-07 49.6 4.1 30 151-180 38-67 (307)
228 2eyu_A Twitching motility prot 95.0 0.015 5.1E-07 49.1 3.7 29 151-179 22-50 (261)
229 1moz_A ARL1, ADP-ribosylation 95.0 0.019 6.6E-07 44.7 4.1 36 142-177 5-41 (183)
230 2dyk_A GTP-binding protein; GT 95.0 0.014 4.8E-07 44.4 3.2 24 155-178 2-25 (161)
231 4g1u_C Hemin import ATP-bindin 95.0 0.011 3.9E-07 50.0 2.8 35 153-190 36-70 (266)
232 1mv5_A LMRA, multidrug resista 95.0 0.014 4.7E-07 48.7 3.4 26 153-178 27-52 (243)
233 1g8f_A Sulfate adenylyltransfe 95.0 0.025 8.5E-07 52.4 5.3 46 134-179 373-420 (511)
234 2ged_A SR-beta, signal recogni 95.0 0.027 9.4E-07 44.3 5.0 26 153-178 47-72 (193)
235 3sr0_A Adenylate kinase; phosp 95.0 0.015 5E-07 47.3 3.4 24 156-179 2-25 (206)
236 2zu0_C Probable ATP-dependent 95.0 0.014 4.8E-07 49.4 3.4 25 153-177 45-69 (267)
237 1zj6_A ADP-ribosylation factor 95.0 0.026 8.8E-07 44.3 4.8 35 142-177 5-39 (187)
238 3dm5_A SRP54, signal recogniti 95.0 0.032 1.1E-06 50.7 5.9 27 153-179 99-125 (443)
239 3crm_A TRNA delta(2)-isopenten 95.0 0.014 4.8E-07 50.8 3.4 25 154-178 5-29 (323)
240 4gzl_A RAS-related C3 botulinu 95.0 0.015 5.1E-07 46.7 3.4 37 142-178 18-54 (204)
241 1cr0_A DNA primase/helicase; R 95.0 0.03 1E-06 47.8 5.5 39 153-193 34-73 (296)
242 1ji0_A ABC transporter; ATP bi 95.0 0.012 4.1E-07 49.0 2.9 35 153-190 31-65 (240)
243 2olj_A Amino acid ABC transpor 95.0 0.014 4.7E-07 49.4 3.2 35 153-190 49-83 (263)
244 1g6h_A High-affinity branched- 95.0 0.012 4.1E-07 49.5 2.9 35 153-190 32-66 (257)
245 3lda_A DNA repair protein RAD5 95.0 0.045 1.6E-06 49.1 6.8 49 153-201 177-229 (400)
246 3cf2_A TER ATPase, transitiona 95.0 0.022 7.4E-07 55.7 5.0 47 132-178 203-262 (806)
247 2pze_A Cystic fibrosis transme 95.0 0.014 4.7E-07 48.3 3.1 26 153-178 33-58 (229)
248 2xxa_A Signal recognition part 94.9 0.027 9.3E-07 51.1 5.3 28 153-180 99-126 (433)
249 3m6a_A ATP-dependent protease 94.9 0.023 7.8E-07 53.2 4.9 44 135-178 83-132 (543)
250 2ff7_A Alpha-hemolysin translo 94.9 0.013 4.4E-07 49.1 2.9 35 153-190 34-68 (247)
251 2ocp_A DGK, deoxyguanosine kin 94.9 0.019 6.4E-07 47.6 3.8 25 154-178 2-26 (241)
252 1sgw_A Putative ABC transporte 94.9 0.011 3.8E-07 48.3 2.4 35 153-190 34-68 (214)
253 2ghi_A Transport protein; mult 94.9 0.015 5.1E-07 49.1 3.2 34 153-190 45-78 (260)
254 2wji_A Ferrous iron transport 94.9 0.015 5E-07 44.9 3.0 23 155-177 4-26 (165)
255 1vpl_A ABC transporter, ATP-bi 94.9 0.015 5.3E-07 48.9 3.2 35 153-190 40-74 (256)
256 2ce2_X GTPase HRAS; signaling 94.9 0.015 5.1E-07 44.2 2.9 23 156-178 5-27 (166)
257 3hjn_A DTMP kinase, thymidylat 94.9 0.059 2E-06 43.3 6.6 25 156-180 2-26 (197)
258 1zu4_A FTSY; GTPase, signal re 94.9 0.021 7.2E-07 49.7 4.2 27 153-179 104-130 (320)
259 2ixe_A Antigen peptide transpo 94.8 0.016 5.3E-07 49.3 3.2 35 153-190 44-78 (271)
260 1nlf_A Regulatory protein REPA 94.8 0.015 5.2E-07 49.3 3.2 27 153-179 29-55 (279)
261 2v9p_A Replication protein E1; 94.8 0.017 5.8E-07 49.9 3.5 27 152-178 124-150 (305)
262 1nij_A Hypothetical protein YJ 94.8 0.016 5.5E-07 50.3 3.3 26 153-178 3-28 (318)
263 2yhs_A FTSY, cell division pro 94.8 0.019 6.6E-07 52.8 3.9 27 153-179 292-318 (503)
264 1q3t_A Cytidylate kinase; nucl 94.8 0.018 6.3E-07 47.5 3.5 25 153-177 15-39 (236)
265 2f9l_A RAB11B, member RAS onco 94.8 0.016 5.6E-07 46.2 3.1 24 154-177 5-28 (199)
266 3io5_A Recombination and repai 94.8 0.064 2.2E-06 46.5 7.0 50 155-205 29-78 (333)
267 3a8t_A Adenylate isopentenyltr 94.8 0.017 5.7E-07 50.6 3.3 26 153-178 39-64 (339)
268 3cr8_A Sulfate adenylyltranfer 94.8 0.037 1.3E-06 51.8 5.9 43 137-179 350-394 (552)
269 3pxi_A Negative regulator of g 94.8 0.06 2E-06 52.4 7.6 45 134-178 492-545 (758)
270 3kl4_A SRP54, signal recogniti 94.8 0.029 9.9E-07 50.9 5.0 27 153-179 96-122 (433)
271 2yz2_A Putative ABC transporte 94.8 0.017 5.7E-07 48.9 3.2 35 153-190 32-66 (266)
272 2vp4_A Deoxynucleoside kinase; 94.8 0.012 4.2E-07 48.4 2.3 25 153-177 19-43 (230)
273 1f6b_A SAR1; gtpases, N-termin 94.8 0.028 9.6E-07 44.8 4.4 33 145-177 15-48 (198)
274 2qi9_C Vitamin B12 import ATP- 94.7 0.015 5.2E-07 48.7 2.8 27 153-179 25-51 (249)
275 3foz_A TRNA delta(2)-isopenten 94.7 0.022 7.7E-07 49.2 4.0 26 153-178 9-34 (316)
276 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.019 6.4E-07 50.0 3.5 24 154-177 123-146 (331)
277 2wjg_A FEOB, ferrous iron tran 94.7 0.018 6E-07 45.2 3.1 24 154-177 7-30 (188)
278 3exa_A TRNA delta(2)-isopenten 94.7 0.019 6.5E-07 49.7 3.5 24 154-177 3-26 (322)
279 1fzq_A ADP-ribosylation factor 94.7 0.028 9.5E-07 44.1 4.3 26 152-177 14-39 (181)
280 1z2a_A RAS-related protein RAB 94.7 0.016 5.4E-07 44.4 2.7 25 154-178 5-29 (168)
281 2nq2_C Hypothetical ABC transp 94.7 0.016 5.3E-07 48.8 2.8 26 153-178 30-55 (253)
282 2ihy_A ABC transporter, ATP-bi 94.7 0.016 5.4E-07 49.5 2.8 36 153-191 46-81 (279)
283 3sop_A Neuronal-specific septi 94.7 0.019 6.6E-07 48.7 3.3 23 156-178 4-26 (270)
284 2v3c_C SRP54, signal recogniti 94.6 0.018 6.1E-07 52.3 3.2 27 153-179 98-124 (432)
285 2zej_A Dardarin, leucine-rich 94.6 0.016 5.5E-07 45.6 2.6 22 156-177 4-25 (184)
286 4hlc_A DTMP kinase, thymidylat 94.6 0.077 2.6E-06 42.9 6.7 31 155-187 3-33 (205)
287 3nh6_A ATP-binding cassette SU 94.6 0.017 5.7E-07 50.0 2.8 27 152-178 78-104 (306)
288 2lkc_A Translation initiation 94.6 0.023 8E-07 43.9 3.5 26 152-177 6-31 (178)
289 1cp2_A CP2, nitrogenase iron p 94.6 0.055 1.9E-06 45.3 6.0 37 155-193 2-38 (269)
290 1svm_A Large T antigen; AAA+ f 94.6 0.038 1.3E-06 49.2 5.2 35 143-177 156-192 (377)
291 3con_A GTPase NRAS; structural 94.6 0.018 6.1E-07 45.3 2.8 24 155-178 22-45 (190)
292 1ls1_A Signal recognition part 94.6 0.028 9.5E-07 48.3 4.1 27 153-179 97-123 (295)
293 1p9r_A General secretion pathw 94.5 0.034 1.2E-06 50.3 4.8 30 150-179 163-192 (418)
294 1u8z_A RAS-related protein RAL 94.5 0.019 6.5E-07 43.8 2.8 25 154-178 4-28 (168)
295 1xp8_A RECA protein, recombina 94.5 0.05 1.7E-06 48.3 5.8 45 153-199 73-117 (366)
296 1nrj_B SR-beta, signal recogni 94.5 0.023 7.8E-07 45.9 3.4 27 152-178 10-36 (218)
297 2j37_W Signal recognition part 94.5 0.042 1.4E-06 50.8 5.5 27 153-179 100-126 (504)
298 2www_A Methylmalonic aciduria 94.5 0.042 1.4E-06 48.4 5.2 25 153-177 73-97 (349)
299 2afh_E Nitrogenase iron protei 94.5 0.032 1.1E-06 47.5 4.3 26 154-179 2-27 (289)
300 1svi_A GTP-binding protein YSX 94.5 0.025 8.5E-07 44.6 3.4 27 152-178 21-47 (195)
301 2gj8_A MNME, tRNA modification 94.4 0.021 7.2E-07 44.5 2.9 23 155-177 5-27 (172)
302 1c1y_A RAS-related protein RAP 94.4 0.02 7E-07 43.6 2.7 23 156-178 5-27 (167)
303 1tq4_A IIGP1, interferon-induc 94.4 0.027 9.2E-07 50.8 3.8 25 152-176 67-91 (413)
304 1m8p_A Sulfate adenylyltransfe 94.4 0.049 1.7E-06 51.2 5.8 37 143-179 383-421 (573)
305 1g41_A Heat shock protein HSLU 94.4 0.026 9E-07 51.3 3.8 46 134-179 16-75 (444)
306 1kao_A RAP2A; GTP-binding prot 94.4 0.021 7.3E-07 43.4 2.7 24 155-178 4-27 (167)
307 2bbs_A Cystic fibrosis transme 94.4 0.025 8.5E-07 48.5 3.4 26 153-178 63-88 (290)
308 1m7b_A RND3/RHOE small GTP-bin 94.4 0.022 7.6E-07 44.6 2.9 25 154-178 7-31 (184)
309 1ek0_A Protein (GTP-binding pr 94.4 0.021 7.3E-07 43.6 2.8 23 156-178 5-27 (170)
310 1r8s_A ADP-ribosylation factor 94.4 0.024 8.3E-07 43.2 3.1 23 156-178 2-24 (164)
311 2nzj_A GTP-binding protein REM 94.4 0.023 7.8E-07 43.8 2.9 25 154-178 4-28 (175)
312 1z08_A RAS-related protein RAB 94.4 0.021 7.3E-07 43.8 2.7 24 155-178 7-30 (170)
313 1tue_A Replication protein E1; 94.4 0.034 1.2E-06 45.2 3.9 38 141-178 44-82 (212)
314 3jvv_A Twitching mobility prot 94.3 0.027 9.3E-07 49.7 3.6 27 152-178 121-147 (356)
315 1z0j_A RAB-22, RAS-related pro 94.3 0.022 7.6E-07 43.6 2.7 24 155-178 7-30 (170)
316 2pjz_A Hypothetical protein ST 94.3 0.022 7.4E-07 48.2 2.8 24 154-177 30-53 (263)
317 2erx_A GTP-binding protein DI- 94.3 0.022 7.7E-07 43.6 2.7 23 155-177 4-26 (172)
318 2fn4_A P23, RAS-related protei 94.3 0.024 8.2E-07 43.9 2.9 26 153-178 8-33 (181)
319 3kta_A Chromosome segregation 94.3 0.029 1E-06 44.0 3.4 24 154-177 26-49 (182)
320 3kjh_A CO dehydrogenase/acetyl 94.3 0.061 2.1E-06 44.2 5.5 40 156-197 2-41 (254)
321 3pqc_A Probable GTP-binding pr 94.3 0.03 1E-06 44.0 3.4 26 153-178 22-47 (195)
322 2hxs_A RAB-26, RAS-related pro 94.2 0.027 9.2E-07 43.6 3.1 25 154-178 6-30 (178)
323 3q72_A GTP-binding protein RAD 94.2 0.024 8.3E-07 43.3 2.8 22 156-177 4-25 (166)
324 1ky3_A GTP-binding protein YPT 94.2 0.024 8.1E-07 44.0 2.7 26 153-178 7-32 (182)
325 1g16_A RAS-related protein SEC 94.2 0.025 8.6E-07 43.2 2.9 24 155-178 4-27 (170)
326 2b6h_A ADP-ribosylation factor 94.2 0.027 9.1E-07 44.7 3.1 32 146-177 21-52 (192)
327 2qm8_A GTPase/ATPase; G protei 94.2 0.046 1.6E-06 47.9 4.8 27 151-177 52-78 (337)
328 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.025 8.5E-07 43.7 2.7 25 154-178 7-31 (177)
329 2p67_A LAO/AO transport system 94.1 0.051 1.8E-06 47.6 5.0 27 151-177 53-79 (341)
330 3ihw_A Centg3; RAS, centaurin, 94.1 0.025 8.5E-07 44.6 2.7 25 154-178 20-44 (184)
331 3eph_A TRNA isopentenyltransfe 94.1 0.034 1.2E-06 49.8 3.8 25 154-178 2-26 (409)
332 2ewv_A Twitching motility prot 94.1 0.033 1.1E-06 49.5 3.8 29 151-179 133-161 (372)
333 1lw7_A Transcriptional regulat 94.1 0.029 9.8E-07 49.6 3.4 26 154-179 170-195 (365)
334 3fvq_A Fe(3+) IONS import ATP- 94.1 0.031 1.1E-06 49.4 3.6 26 153-178 29-54 (359)
335 3tui_C Methionine import ATP-b 94.1 0.03 1E-06 49.6 3.4 26 153-178 53-78 (366)
336 3ld9_A DTMP kinase, thymidylat 94.1 0.072 2.5E-06 43.8 5.6 30 151-180 18-47 (223)
337 1r2q_A RAS-related protein RAB 94.1 0.026 9E-07 43.1 2.8 23 155-177 7-29 (170)
338 3q85_A GTP-binding protein REM 94.1 0.025 8.6E-07 43.3 2.6 22 155-176 3-24 (169)
339 1j8m_F SRP54, signal recogniti 94.1 0.035 1.2E-06 47.7 3.8 26 154-179 98-123 (297)
340 2bme_A RAB4A, RAS-related prot 94.1 0.028 9.5E-07 43.9 2.9 25 154-178 10-34 (186)
341 1m2o_B GTP-binding protein SAR 94.1 0.028 9.6E-07 44.5 2.9 26 152-177 21-46 (190)
342 3t1o_A Gliding protein MGLA; G 94.1 0.028 9.6E-07 44.2 2.9 24 154-177 14-37 (198)
343 4dsu_A GTPase KRAS, isoform 2B 94.0 0.027 9.2E-07 44.0 2.7 24 155-178 5-28 (189)
344 1z0f_A RAB14, member RAS oncog 94.0 0.027 9.4E-07 43.4 2.8 25 154-178 15-39 (179)
345 2qmh_A HPR kinase/phosphorylas 94.0 0.031 1.1E-06 45.1 3.1 25 153-177 33-57 (205)
346 1p5z_B DCK, deoxycytidine kina 94.0 0.017 5.9E-07 48.5 1.6 27 152-178 22-48 (263)
347 3kkq_A RAS-related protein M-R 94.0 0.028 9.5E-07 43.8 2.8 25 154-178 18-42 (183)
348 3c5c_A RAS-like protein 12; GD 94.0 0.028 9.4E-07 44.4 2.7 25 154-178 21-45 (187)
349 3ch4_B Pmkase, phosphomevalona 94.0 0.046 1.6E-06 44.2 4.0 28 151-178 8-35 (202)
350 2cxx_A Probable GTP-binding pr 94.0 0.025 8.6E-07 44.3 2.5 23 156-178 3-25 (190)
351 2y8e_A RAB-protein 6, GH09086P 94.0 0.03 1E-06 43.2 2.9 23 155-177 15-37 (179)
352 2axn_A 6-phosphofructo-2-kinas 94.0 0.037 1.3E-06 51.5 3.9 28 152-179 33-60 (520)
353 2h92_A Cytidylate kinase; ross 94.0 0.029 9.8E-07 45.5 2.9 23 155-177 4-26 (219)
354 2yv5_A YJEQ protein; hydrolase 93.9 0.053 1.8E-06 46.7 4.6 33 142-178 156-188 (302)
355 1ksh_A ARF-like protein 2; sma 93.9 0.028 9.5E-07 44.0 2.6 27 152-178 16-42 (186)
356 1z47_A CYSA, putative ABC-tran 93.9 0.03 1E-06 49.4 3.0 26 153-178 40-65 (355)
357 3dz8_A RAS-related protein RAB 93.9 0.035 1.2E-06 43.8 3.2 24 155-178 24-47 (191)
358 3t5g_A GTP-binding protein RHE 93.9 0.032 1.1E-06 43.4 2.9 25 154-178 6-30 (181)
359 1mh1_A RAC1; GTP-binding, GTPa 93.9 0.03 1E-06 43.6 2.8 24 155-178 6-29 (186)
360 2iwr_A Centaurin gamma 1; ANK 93.9 0.024 8.1E-07 44.0 2.2 23 155-177 8-30 (178)
361 1pui_A ENGB, probable GTP-bind 93.9 0.022 7.4E-07 45.6 1.9 28 151-178 23-50 (210)
362 3lv8_A DTMP kinase, thymidylat 93.9 0.12 4.2E-06 42.8 6.6 31 154-185 27-57 (236)
363 1upt_A ARL1, ADP-ribosylation 93.9 0.04 1.4E-06 42.2 3.4 25 154-178 7-31 (171)
364 2yyz_A Sugar ABC transporter, 93.9 0.035 1.2E-06 49.1 3.4 26 153-178 28-53 (359)
365 3fdi_A Uncharacterized protein 93.9 0.04 1.4E-06 44.4 3.5 25 154-178 6-30 (201)
366 3bc1_A RAS-related protein RAB 93.9 0.031 1.1E-06 43.8 2.8 25 154-178 11-35 (195)
367 2a9k_A RAS-related protein RAL 93.8 0.031 1.1E-06 43.5 2.8 25 154-178 18-42 (187)
368 2it1_A 362AA long hypothetical 93.8 0.036 1.2E-06 49.1 3.4 26 153-178 28-53 (362)
369 3d31_A Sulfate/molybdate ABC t 93.8 0.033 1.1E-06 49.1 3.1 26 153-178 25-50 (348)
370 2orw_A Thymidine kinase; TMTK, 93.8 0.054 1.9E-06 43.0 4.2 25 155-179 4-28 (184)
371 3iqw_A Tail-anchored protein t 93.8 0.09 3.1E-06 46.0 5.9 50 151-202 13-62 (334)
372 2gks_A Bifunctional SAT/APS ki 93.8 0.086 2.9E-06 49.3 6.1 46 134-179 350-397 (546)
373 3bwd_D RAC-like GTP-binding pr 93.8 0.032 1.1E-06 43.3 2.8 24 154-177 8-31 (182)
374 2efe_B Small GTP-binding prote 93.8 0.031 1.1E-06 43.3 2.7 24 155-178 13-36 (181)
375 2oil_A CATX-8, RAS-related pro 93.8 0.031 1.1E-06 44.0 2.7 25 154-178 25-49 (193)
376 2bov_A RAla, RAS-related prote 93.8 0.032 1.1E-06 44.3 2.8 26 153-178 13-38 (206)
377 1ega_A Protein (GTP-binding pr 93.8 0.034 1.2E-06 47.8 3.1 25 153-177 7-31 (301)
378 1gwn_A RHO-related GTP-binding 93.7 0.035 1.2E-06 44.6 2.9 26 153-178 27-52 (205)
379 2g6b_A RAS-related protein RAB 93.7 0.034 1.2E-06 43.1 2.8 25 154-178 10-34 (180)
380 2fg5_A RAB-22B, RAS-related pr 93.7 0.035 1.2E-06 43.8 2.9 25 154-178 23-47 (192)
381 1vg8_A RAS-related protein RAB 93.7 0.033 1.1E-06 44.3 2.7 26 153-178 7-32 (207)
382 1g29_1 MALK, maltose transport 93.7 0.034 1.2E-06 49.4 3.0 26 153-178 28-53 (372)
383 1v43_A Sugar-binding transport 93.7 0.039 1.3E-06 49.1 3.4 26 153-178 36-61 (372)
384 3tw8_B RAS-related protein RAB 93.7 0.032 1.1E-06 43.1 2.6 25 153-177 8-32 (181)
385 2zts_A Putative uncharacterize 93.7 0.064 2.2E-06 44.0 4.6 50 153-205 29-78 (251)
386 4edh_A DTMP kinase, thymidylat 93.7 0.14 4.7E-06 41.7 6.5 33 154-187 6-38 (213)
387 2cjw_A GTP-binding protein GEM 93.7 0.038 1.3E-06 43.8 3.1 23 154-176 6-28 (192)
388 3rlf_A Maltose/maltodextrin im 93.7 0.039 1.3E-06 49.1 3.4 26 153-178 28-53 (381)
389 2atv_A RERG, RAS-like estrogen 93.7 0.043 1.5E-06 43.4 3.4 27 152-178 26-52 (196)
390 2ffh_A Protein (FFH); SRP54, s 93.7 0.081 2.8E-06 47.8 5.5 27 153-179 97-123 (425)
391 1oxx_K GLCV, glucose, ABC tran 93.7 0.029 1E-06 49.5 2.5 26 153-178 30-55 (353)
392 2qnr_A Septin-2, protein NEDD5 93.7 0.032 1.1E-06 48.0 2.7 22 156-177 20-41 (301)
393 3oes_A GTPase rhebl1; small GT 93.6 0.04 1.4E-06 43.9 3.1 26 153-178 23-48 (201)
394 3clv_A RAB5 protein, putative; 93.6 0.035 1.2E-06 43.7 2.7 25 154-178 7-31 (208)
395 3cbq_A GTP-binding protein REM 93.6 0.028 9.4E-07 44.8 2.1 23 153-175 22-44 (195)
396 2gza_A Type IV secretion syste 93.6 0.034 1.2E-06 49.2 2.9 26 153-178 174-199 (361)
397 2ew1_A RAS-related protein RAB 93.6 0.038 1.3E-06 44.3 2.9 24 154-177 26-49 (201)
398 2gf0_A GTP-binding protein DI- 93.6 0.042 1.4E-06 43.4 3.1 25 153-177 7-31 (199)
399 1zd9_A ADP-ribosylation factor 93.6 0.037 1.3E-06 43.5 2.8 24 155-178 23-46 (188)
400 2ck3_D ATP synthase subunit be 93.6 0.34 1.1E-05 44.3 9.3 74 144-218 142-230 (482)
401 3gmt_A Adenylate kinase; ssgci 93.6 0.042 1.4E-06 45.4 3.1 25 155-179 9-33 (230)
402 2qu8_A Putative nucleolar GTP- 93.6 0.04 1.4E-06 44.9 3.0 26 152-177 27-52 (228)
403 3tkl_A RAS-related protein RAB 93.6 0.037 1.3E-06 43.5 2.8 25 154-178 16-40 (196)
404 1bif_A 6-phosphofructo-2-kinas 93.5 0.045 1.6E-06 50.1 3.7 28 152-179 37-64 (469)
405 2obl_A ESCN; ATPase, hydrolase 93.5 0.046 1.6E-06 48.1 3.5 35 145-179 61-96 (347)
406 1r6b_X CLPA protein; AAA+, N-t 93.5 0.083 2.8E-06 51.3 5.6 45 134-178 459-512 (758)
407 2gf9_A RAS-related protein RAB 93.5 0.039 1.3E-06 43.4 2.8 24 155-178 23-46 (189)
408 2fh5_B SR-beta, signal recogni 93.5 0.042 1.4E-06 44.1 3.0 26 153-178 6-31 (214)
409 3llu_A RAS-related GTP-binding 93.5 0.038 1.3E-06 43.8 2.7 24 154-177 20-43 (196)
410 1sky_E F1-ATPase, F1-ATP synth 93.5 0.26 9E-06 45.0 8.5 72 145-217 141-221 (473)
411 3reg_A RHO-like small GTPase; 93.5 0.039 1.3E-06 43.5 2.8 25 154-178 23-47 (194)
412 2r8r_A Sensor protein; KDPD, P 93.5 0.052 1.8E-06 44.7 3.5 30 156-186 8-37 (228)
413 3io3_A DEHA2D07832P; chaperone 93.5 0.13 4.4E-06 45.3 6.3 51 151-202 15-66 (348)
414 2o52_A RAS-related protein RAB 93.4 0.039 1.3E-06 44.0 2.7 24 154-177 25-48 (200)
415 1zbd_A Rabphilin-3A; G protein 93.4 0.036 1.2E-06 44.0 2.5 24 155-178 9-32 (203)
416 3k53_A Ferrous iron transport 93.4 0.049 1.7E-06 45.9 3.4 24 154-177 3-26 (271)
417 1z06_A RAS-related protein RAB 93.4 0.041 1.4E-06 43.3 2.7 25 154-178 20-44 (189)
418 1x3s_A RAS-related protein RAB 93.4 0.041 1.4E-06 43.2 2.8 24 155-178 16-39 (195)
419 2a5j_A RAS-related protein RAB 93.4 0.04 1.4E-06 43.4 2.7 24 155-178 22-45 (191)
420 4tmk_A Protein (thymidylate ki 93.4 0.17 5.9E-06 41.1 6.6 27 154-180 3-29 (213)
421 3iev_A GTP-binding protein ERA 93.4 0.039 1.3E-06 47.6 2.8 25 153-177 9-33 (308)
422 2aka_B Dynamin-1; fusion prote 93.4 0.089 3E-06 44.6 5.0 38 141-178 7-50 (299)
423 2h17_A ADP-ribosylation factor 93.4 0.04 1.4E-06 43.0 2.6 23 155-177 22-44 (181)
424 2bcg_Y Protein YP2, GTP-bindin 93.3 0.044 1.5E-06 43.7 2.9 25 154-178 8-32 (206)
425 2q3h_A RAS homolog gene family 93.3 0.039 1.3E-06 43.8 2.5 25 154-178 20-44 (201)
426 1u0l_A Probable GTPase ENGC; p 93.3 0.072 2.5E-06 45.8 4.4 35 142-179 160-194 (301)
427 4dzz_A Plasmid partitioning pr 93.3 0.097 3.3E-06 41.6 4.9 38 155-194 2-40 (206)
428 3v9p_A DTMP kinase, thymidylat 93.3 0.051 1.8E-06 44.8 3.3 28 153-180 24-51 (227)
429 3gd7_A Fusion complex of cysti 93.3 0.053 1.8E-06 48.5 3.6 35 153-191 46-80 (390)
430 2atx_A Small GTP binding prote 93.3 0.046 1.6E-06 43.1 2.9 24 155-178 19-42 (194)
431 2p5s_A RAS and EF-hand domain 93.3 0.042 1.4E-06 43.6 2.7 27 152-178 26-52 (199)
432 2fv8_A H6, RHO-related GTP-bin 93.3 0.046 1.6E-06 43.7 2.9 25 154-178 25-49 (207)
433 3lxx_A GTPase IMAP family memb 93.2 0.05 1.7E-06 44.8 3.1 27 152-178 27-53 (239)
434 1fx0_B ATP synthase beta chain 93.2 0.49 1.7E-05 43.4 9.8 74 145-219 155-244 (498)
435 2j1l_A RHO-related GTP-binding 93.2 0.044 1.5E-06 44.2 2.7 25 153-177 33-57 (214)
436 2hup_A RAS-related protein RAB 93.2 0.049 1.7E-06 43.4 2.9 24 154-177 29-52 (201)
437 2j0v_A RAC-like GTP-binding pr 93.1 0.05 1.7E-06 43.6 2.9 26 153-178 8-33 (212)
438 4bas_A ADP-ribosylation factor 93.1 0.054 1.8E-06 42.7 3.0 26 153-178 16-41 (199)
439 4dhe_A Probable GTP-binding pr 93.1 0.036 1.2E-06 44.8 2.0 27 152-178 27-53 (223)
440 2gco_A H9, RHO-related GTP-bin 93.1 0.051 1.8E-06 43.2 2.9 25 154-178 25-49 (201)
441 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.047 1.6E-06 50.0 2.9 28 152-179 136-163 (460)
442 1u0j_A DNA replication protein 93.0 0.11 3.8E-06 43.8 5.0 37 141-177 89-127 (267)
443 1ypw_A Transitional endoplasmi 93.0 0.048 1.7E-06 53.5 3.1 49 131-179 475-536 (806)
444 2fu5_C RAS-related protein RAB 93.0 0.031 1E-06 43.6 1.4 24 154-177 8-31 (183)
445 2rcn_A Probable GTPase ENGC; Y 93.0 0.052 1.8E-06 47.9 3.0 25 154-178 215-239 (358)
446 2xtp_A GTPase IMAP family memb 93.0 0.064 2.2E-06 44.7 3.5 26 153-178 21-46 (260)
447 1qvr_A CLPB protein; coiled co 93.0 0.091 3.1E-06 51.8 5.1 45 134-178 559-612 (854)
448 3hdt_A Putative kinase; struct 93.0 0.084 2.9E-06 43.3 4.1 26 153-178 13-38 (223)
449 1x6v_B Bifunctional 3'-phospho 92.9 0.063 2.2E-06 51.0 3.7 26 153-178 51-76 (630)
450 3fkq_A NTRC-like two-domain pr 92.9 0.11 3.7E-06 46.1 5.1 40 152-193 141-181 (373)
451 3cph_A RAS-related protein SEC 92.9 0.051 1.8E-06 43.4 2.7 25 154-178 20-44 (213)
452 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.038 1.3E-06 48.3 2.0 26 154-179 171-196 (330)
453 2qag_B Septin-6, protein NEDD5 92.9 0.05 1.7E-06 49.2 2.8 21 157-177 45-65 (427)
454 3cwq_A Para family chromosome 92.9 0.16 5.4E-06 41.0 5.6 38 156-196 2-40 (209)
455 3def_A T7I23.11 protein; chlor 92.9 0.12 4E-06 43.3 5.0 26 153-178 35-60 (262)
456 1wf3_A GTP-binding protein; GT 92.9 0.054 1.9E-06 46.6 2.9 24 154-177 7-30 (301)
457 3f9v_A Minichromosome maintena 92.8 0.043 1.5E-06 51.9 2.4 23 156-178 329-351 (595)
458 2g3y_A GTP-binding protein GEM 92.8 0.056 1.9E-06 43.9 2.8 23 154-176 37-59 (211)
459 2h57_A ADP-ribosylation factor 92.8 0.037 1.3E-06 43.5 1.7 24 155-178 22-45 (190)
460 3q3j_B RHO-related GTP-binding 92.8 0.055 1.9E-06 43.7 2.8 25 154-178 27-51 (214)
461 1h65_A Chloroplast outer envel 92.8 0.12 4E-06 43.5 4.8 26 153-178 38-63 (270)
462 3tmk_A Thymidylate kinase; pho 92.8 0.083 2.9E-06 43.2 3.7 26 154-179 5-30 (216)
463 2il1_A RAB12; G-protein, GDP, 92.7 0.056 1.9E-06 42.7 2.6 24 155-178 27-50 (192)
464 2r6a_A DNAB helicase, replicat 92.7 0.12 4.2E-06 47.0 5.1 52 141-195 192-243 (454)
465 2x77_A ADP-ribosylation factor 92.6 0.088 3E-06 41.2 3.7 26 152-177 20-45 (189)
466 3zq6_A Putative arsenical pump 92.6 0.18 6.1E-06 43.7 6.0 46 155-202 15-60 (324)
467 2dpy_A FLII, flagellum-specifi 92.6 0.073 2.5E-06 48.3 3.5 28 152-179 155-182 (438)
468 2f7s_A C25KG, RAS-related prot 92.5 0.054 1.9E-06 43.5 2.3 24 154-177 25-48 (217)
469 4dkx_A RAS-related protein RAB 92.5 0.064 2.2E-06 43.7 2.8 22 156-177 15-36 (216)
470 1jwy_B Dynamin A GTPase domain 92.5 0.15 5.1E-06 43.6 5.2 26 152-177 22-47 (315)
471 1t9h_A YLOQ, probable GTPase E 92.5 0.038 1.3E-06 47.8 1.4 25 154-178 173-197 (307)
472 3iby_A Ferrous iron transport 92.4 0.074 2.5E-06 44.6 3.1 23 155-177 2-24 (256)
473 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.093 3.2E-06 40.1 3.4 23 154-176 23-45 (149)
474 1yqt_A RNAse L inhibitor; ATP- 92.4 0.067 2.3E-06 50.0 3.0 27 153-179 311-337 (538)
475 1yqt_A RNAse L inhibitor; ATP- 92.4 0.067 2.3E-06 49.9 3.0 26 153-178 46-71 (538)
476 1mky_A Probable GTP-binding pr 92.4 0.14 4.7E-06 46.4 5.0 42 137-178 152-204 (439)
477 3tqf_A HPR(Ser) kinase; transf 92.3 0.084 2.9E-06 41.6 3.1 24 154-177 16-39 (181)
478 3ez9_A Para; DNA binding, wing 92.3 0.17 5.7E-06 45.3 5.5 28 152-179 109-137 (403)
479 2q6t_A DNAB replication FORK h 92.3 0.17 5.6E-06 46.0 5.4 52 141-195 189-240 (444)
480 4a1f_A DNAB helicase, replicat 92.3 0.16 5.5E-06 44.4 5.2 59 141-205 35-93 (338)
481 3euj_A Chromosome partition pr 92.2 0.075 2.6E-06 48.8 3.0 24 155-178 30-53 (483)
482 3cpj_B GTP-binding protein YPT 92.1 0.074 2.5E-06 43.1 2.7 25 154-178 13-37 (223)
483 2qtf_A Protein HFLX, GTP-bindi 92.1 0.075 2.6E-06 47.0 2.8 26 153-178 178-203 (364)
484 3ozx_A RNAse L inhibitor; ATP 92.1 0.064 2.2E-06 50.1 2.5 26 153-178 293-318 (538)
485 3ozx_A RNAse L inhibitor; ATP 92.1 0.086 2.9E-06 49.2 3.4 26 153-178 24-49 (538)
486 3ea0_A ATPase, para family; al 92.1 0.1 3.5E-06 42.8 3.5 28 153-180 3-31 (245)
487 3bgw_A DNAB-like replicative h 92.1 0.19 6.6E-06 45.6 5.6 51 141-195 186-236 (444)
488 3b60_A Lipid A export ATP-bind 92.1 0.086 2.9E-06 49.7 3.4 35 153-190 368-402 (582)
489 3lxw_A GTPase IMAP family memb 92.1 0.07 2.4E-06 44.4 2.5 25 154-178 21-45 (247)
490 3llm_A ATP-dependent RNA helic 92.0 0.36 1.2E-05 39.5 6.8 21 155-175 77-97 (235)
491 3th5_A RAS-related C3 botulinu 91.3 0.028 9.7E-07 44.8 0.0 29 149-177 25-53 (204)
492 3bk7_A ABC transporter ATP-bin 91.9 0.081 2.8E-06 50.1 3.0 27 153-179 381-407 (607)
493 3b5x_A Lipid A export ATP-bind 91.9 0.085 2.9E-06 49.7 3.2 27 153-179 368-394 (582)
494 3k9g_A PF-32 protein; ssgcid, 91.9 0.16 5.6E-06 42.3 4.7 40 151-193 24-64 (267)
495 3b1v_A Ferrous iron uptake tra 91.9 0.093 3.2E-06 44.4 3.1 24 154-177 3-26 (272)
496 2b8t_A Thymidine kinase; deoxy 91.9 0.19 6.6E-06 41.2 4.9 28 152-179 10-37 (223)
497 3j16_B RLI1P; ribosome recycli 91.9 0.083 2.8E-06 50.1 3.0 26 153-178 102-127 (608)
498 3j16_B RLI1P; ribosome recycli 91.8 0.082 2.8E-06 50.1 3.0 25 155-179 379-403 (608)
499 3l0o_A Transcription terminati 91.8 0.38 1.3E-05 42.9 6.9 76 142-218 162-240 (427)
500 3cnl_A YLQF, putative uncharac 91.8 0.18 6.1E-06 42.4 4.7 36 142-178 88-123 (262)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=1.6e-26 Score=218.85 Aligned_cols=139 Identities=13% Similarity=0.168 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHHhcCC---CceEEEEEecCCchhhHHHHHHHH--hhhhcCCCCeEEEEEeCCcc--CHHHHHHHh---
Q 038843 136 ESRMSTLNDILGALKNP---DVNMLGIYGMGGIRKTTLPKEVAR--KAENEKLFDQVIFAEVSQNQ--DIRKIQGEI--- 205 (283)
Q Consensus 136 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i--- 205 (283)
+||+.++++|.++|.+. ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999733 689999999999999999999999 57778999999999998864 222222211
Q ss_pred ------------------------------------------------------CcEeEEeecchhHHhhhcC-C-----
Q 038843 206 ------------------------------------------------------GCKILLRARSEDTLSRKLD-S----- 225 (283)
Q Consensus 206 ------------------------------------------------------~s~iivTTR~~~v~~~~~~-~----- 225 (283)
||+||||||+..++.. ++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~-~~~~~~~~~ 289 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNA-ASQTCEFIE 289 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGG-CCSCEEEEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHH-cCCCCeEEE
Confidence 8999999999999743 32 1
Q ss_pred -----hhHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCCC
Q 038843 226 -----KQNFSSLFKKMAGDYIEGSEFKSVAMDVAEECAGLPVSIVTIARALRNKS 275 (283)
Q Consensus 226 -----~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k~ 275 (283)
....++||++++|....++++.+++++|+++|+|+||||+++|+.|+.++
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~ 344 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT 344 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS
T ss_pred CCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch
Confidence 24456999999985544578899999999999999999999999998763
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=3.5e-23 Score=211.58 Aligned_cols=150 Identities=21% Similarity=0.361 Sum_probs=113.7
Q ss_pred CCCCCCccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhhh-cCCC-CeEEEEEeCCccC------H
Q 038843 129 NKDYAPFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAEN-EKLF-DQVIFAEVSQNQD------I 198 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~------~ 198 (283)
|.....|+||+.++++|.++|. ++..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ +
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4445668999999999999996 467899999999999999999999998654 3445 7888999987432 1
Q ss_pred HHHHHHh--------------------------------------------------CcEeEEeecchhHHhhhcC----
Q 038843 199 RKIQGEI--------------------------------------------------GCKILLRARSEDTLSRKLD---- 224 (283)
Q Consensus 199 ~~i~~~i--------------------------------------------------~s~iivTTR~~~v~~~~~~---- 224 (283)
..+...+ ||+||+|||++.++...++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~ 279 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHV 279 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCC
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceE
Confidence 1111111 8999999999988632111
Q ss_pred -------ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCCChhHHhh
Q 038843 225 -------SKQNFSSLFKKMAGDYIEGSEFKSVAMDVAEECAGLPVSIVTIARALRNKSLFEWKD 281 (283)
Q Consensus 225 -------~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k~~~~W~~ 281 (283)
.....++||...++.. .+++.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred EEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHH
Confidence 2234459999988632 345567899999999999999999999999763 35654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=6.2e-21 Score=187.31 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=108.7
Q ss_pred ccccHHHHHHHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe-EEEEEeCCccCHHHHHHH--------
Q 038843 135 FESRMSTLNDILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ-VIFAEVSQNQDIRKIQGE-------- 204 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~-------- 204 (283)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 47999999999999984 56899999999999999999999998877789976 999999887664332100
Q ss_pred ------------------------h------------------------------CcEeEEeecchhHHhh-------hc
Q 038843 205 ------------------------I------------------------------GCKILLRARSEDTLSR-------KL 223 (283)
Q Consensus 205 ------------------------i------------------------------~s~iivTTR~~~v~~~-------~~ 223 (283)
+ ||+||||||++.++.. .+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~L 289 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEE
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEe
Confidence 0 8999999999998621 11
Q ss_pred C--------ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCC--ChhHHhh
Q 038843 224 D--------SKQNFSSLFKKMAGDYIEGSEFKSVAMDVAEECAGLPVSIVTIARALRNK--SLFEWKD 281 (283)
Q Consensus 224 ~--------~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k--~~~~W~~ 281 (283)
. ..+..++||+...+.. ..++..+| |+|+||||+++|+.|+.+ +.++|..
T Consensus 290 eL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 290 SLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp EECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred cCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 1 2345669999986532 12333343 999999999999999977 7888975
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=174.07 Aligned_cols=149 Identities=22% Similarity=0.367 Sum_probs=111.9
Q ss_pred CCCCCccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhhh-cCCC-CeEEEEEeCCccC---HHHH-
Q 038843 130 KDYAPFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAEN-EKLF-DQVIFAEVSQNQD---IRKI- 201 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~---~~~i- 201 (283)
..+..++||+.++++|.++|. ++..++|+|+||||+||||||.+++++..+ ..+| ++++|++++.... ...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 344568899999999999998 456899999999999999999999998755 5789 6899999865421 0111
Q ss_pred -----------------------HHHh-----------------------------CcEeEEeecchhHHhhhcC-----
Q 038843 202 -----------------------QGEI-----------------------------GCKILLRARSEDTLSRKLD----- 224 (283)
Q Consensus 202 -----------------------~~~i-----------------------------~s~iivTTR~~~v~~~~~~----- 224 (283)
...+ +|+||+|||+..++....+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v 280 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVV 280 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEE
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEe
Confidence 1100 8999999999987632111
Q ss_pred ------ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhhCCChhHHhh
Q 038843 225 ------SKQNFSSLFKKMAGDYIEGSEFKSVAMDVAEECAGLPVSIVTIARALRNKSLFEWKD 281 (283)
Q Consensus 225 ------~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~k~~~~W~~ 281 (283)
.....++||...++.. .+...+.+.+|+++|+|+||||..+|+.|+.+ ...|..
T Consensus 281 ~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~ 340 (591)
T 1z6t_A 281 PVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEY 340 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHH
T ss_pred ecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHH
Confidence 1233459999998742 23345678999999999999999999999865 335654
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.13 E-value=5.7e-11 Score=88.68 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=58.6
Q ss_pred HHHHHHhhhhHHHHhhhhhhccccc------------hhHHHHHhcC-cccchHHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 038843 9 VLEVVKCLAPPAERQFSYLRSYNNN------------HAVDEAKRKG-IEIEKKVEKWLDSVNNAIFEAEKFVGDEAAAN 75 (283)
Q Consensus 9 v~~~~~~l~~~~~~~~~~~~~~~~~------------~~l~~a~~~~-~~~~~~v~~Wl~~l~~~~~daed~ld~~~~~~ 75 (283)
++.++.+|.+.+.+++..+.+++++ +++.+|+.+. ...++.++.|+++||+++||+||+||+|.+..
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999877 7899998763 33589999999999999999999999998764
Q ss_pred h
Q 038843 76 K 76 (283)
Q Consensus 76 ~ 76 (283)
.
T Consensus 83 ~ 83 (115)
T 3qfl_A 83 D 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=6.4e-08 Score=85.38 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=39.4
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+..++||+.+++.|.+ +.. +++.|+|++|+|||+|++++.+..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 3344568899999999999 765 699999999999999999998764
No 7
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.69 E-value=4.4e-07 Score=75.10 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=42.6
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+..+.+++||+..++.+..++..+. .+.+.|+|.+|+||||||+.+++...
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445668899999999999987543 46889999999999999999987653
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.67 E-value=3.9e-07 Score=74.51 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..+.+++|++..++.+.+++.....+.+.|+|.+|+|||+||+.+++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44456688999999999999987766669999999999999999998764
No 9
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=6.9e-06 Score=71.32 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 44456788999999999999987766669999999999999999998764
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.20 E-value=1.4e-06 Score=76.54 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=46.5
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
++..+..++||+.+++.|.+++.++ +++.|+|++|+|||||++++.+.. + .+|++...
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~ 64 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRE 64 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeec
Confidence 3334456889999999999988754 799999999999999999998764 1 67777643
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.15 E-value=4.3e-06 Score=74.32 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=48.0
Q ss_pred CCCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhhhcCC-CCeEEEEEeC
Q 038843 132 YAPFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKL-FDQVIFAEVS 193 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs 193 (283)
+..++||+.+++.+.+++. ....+.+.|+|++|+|||||++.+++....... -...+|++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3568899999999999887 456779999999999999999999987652211 1245677643
No 12
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.3e-05 Score=69.77 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 44566788999999999999987766669999999999999999998763
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=4.9e-06 Score=66.16 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++||+..++++.+++.....+.+.|+|.+|+|||+||+.+.+...
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 344567889999999999999877777889999999999999999988754
No 14
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.02 E-value=8e-06 Score=72.81 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhhhc----CC--CCeEEEEEeCC
Q 038843 133 APFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAENE----KL--FDQVIFAEVSQ 194 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~ 194 (283)
..++||+.+++++.+++. .+..+.+.|+|++|+|||+||+.+++..... .. ....+|++.+.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 568899999999887765 4456789999999999999999999875322 11 23467777543
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.01 E-value=8.3e-06 Score=73.38 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=46.5
Q ss_pred CCccccHHHHHHHHHHh-c----C--CCceEEEE--EecCCchhhHHHHHHHHhhhhc---CCCC-eEEEEEeCCc
Q 038843 133 APFESRMSTLNDILGAL-K----N--PDVNMLGI--YGMGGIRKTTLPKEVARKAENE---KLFD-QVIFAEVSQN 195 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~ 195 (283)
..++||+.+++.+.+++ . . ...+.+.| +|++|+|||||++.+++..... ..|+ ..+|++....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 56889999999999988 3 2 34567777 9999999999999999876531 1233 3577775443
No 16
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=7.4e-06 Score=64.94 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++||+.+++.+.+.+.....+.+.|+|.+|+|||+||+.+.+...
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 334567889999999999999887777889999999999999999988753
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.95 E-value=1.7e-05 Score=70.48 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=49.0
Q ss_pred CCCccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhhhcC---CC-CeEEEEEeCCccC
Q 038843 132 YAPFESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAENEK---LF-DQVIFAEVSQNQD 197 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~ 197 (283)
+..++||+.+++++..++. ....+.+.|+|++|+||||||+.+++...... .. -..+|++.....+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 3568899999999999884 35667899999999999999999998764210 11 2356777654433
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=2.9e-05 Score=69.15 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.3
Q ss_pred CCccccHHHHHHHHHHhcC----CCce--EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCH
Q 038843 133 APFESRMSTLNDILGALKN----PDVN--MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDI 198 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 198 (283)
..++||+.+++.+.+++.. .... .+.|+|.+|+|||||++.+.+....... ...+|++.+...+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCH
Confidence 5688999999999988863 3334 8999999999999999999987652211 24567775554443
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.88 E-value=0.0003 Score=61.06 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.+++|++..++.+..++. ......+.|+|.+|+|||+||+.+++..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 346678899998888887775 2345678899999999999999998765
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.84 E-value=9.3e-05 Score=63.94 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|++..++.+.+++..+..+.+.++|.+|+|||++|+.+.+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 33455688999999999999987766669999999999999999998763
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.59 E-value=0.0012 Score=55.33 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCCCCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALK---N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.++.|.+..++.+.+++. . ...+-+.|+|.+|+|||+||+.+++..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345667788877766655432 1 234567899999999999999998864
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.53 E-value=0.00018 Score=59.33 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCCCcccc---HHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESR---MSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++++. ...++.+..++.....+.+.|+|.+|+||||||+.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44556653 35566666666665678899999999999999999988754
No 23
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00029 Score=61.47 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 135 FESRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+|++++++|...|. ++..+.+-|+|++|.|||++++.+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6699999999988776 56778899999999999999999999875
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.41 E-value=0.00014 Score=62.01 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=41.7
Q ss_pred ccCCCCCCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 127 MSNKDYAPFESRMSTLNDILGALKN-------------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 127 ~~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+...+.++.|.+..+++|.+.+.. ...+-+.|+|.+|+|||+||+.+.+..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444566788999999988887742 355678999999999999999998764
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00015 Score=63.60 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=42.7
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|..+.+++|++..++.+..++..+..+.+.++|.+|+||||||+.+.+..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44566788999999999999987765569999999999999999998764
No 26
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.35 E-value=0.00023 Score=65.55 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++||+.+++.+++.|.....+-+.++|.+|+|||+||+.+.+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 355689999999999999986666677899999999999999998875
No 27
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0028 Score=57.79 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=38.9
Q ss_pred CCCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.++.|.+..+++|.+.+. -...+-|.++|++|.|||.||+.+.+...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 345568888888877776543 13578889999999999999999987643
No 28
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0033 Score=56.40 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.0
Q ss_pred cCCCCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|...+.++.|.+..+++|.+.+. -...+-|-++|++|.|||.||+.+.+...
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 33445667788887777766553 13457789999999999999999987653
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.23 E-value=0.0004 Score=59.64 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=40.4
Q ss_pred cCCCCCCccccHHHHHHHHHHhcC------------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKN------------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++..+.++.|.+..++.+.+.+.. ...+.+.|+|.+|+|||+||+.+.+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 344566788999999888887631 245788999999999999999998764
No 30
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.21 E-value=0.00046 Score=61.00 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++|++..++.+...+..+. .+.+.|+|..|+||||+|+.+.+...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345668899999999999887554 46788999999999999999987653
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.00037 Score=64.94 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=42.4
Q ss_pred cCCCCCCccccHHHHHHHHHHhcC-----------------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKN-----------------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|..+.+++|++..++++.+|+.. +..+.+.|+|++|+||||||+.+.+..
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344567789999999999999874 135789999999999999999998764
No 32
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.18 E-value=0.00031 Score=53.81 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=34.5
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+++|+...++++.+.+. .....-|.|+|.+|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46788888888888775 2333446799999999999999998764
No 33
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.0003 Score=61.90 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCCCccccHHHHHHHHHHh-cCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 129 NKDYAPFESRMSTLNDILGAL-KNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
|..+.+++|.+..++.+.+++ ..+..+.+.|+|..|+|||||++.+...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566889999999999998 6665555999999999999999999874
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.15 E-value=0.00044 Score=60.51 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.6
Q ss_pred CCCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.+++|++..++.+..++. ....+.+.|+|.+|+|||+||+.+.+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356678899999998888886 2455678999999999999999998764
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.10 E-value=0.00057 Score=54.12 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 139 MSTLNDILGALKN---PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 139 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++.+.+++.+ .....+.|+|..|+|||||++.+++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555555442 3457899999999999999999998865
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.0015 Score=52.62 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCC----CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEe
Q 038843 141 TLNDILGALKNP----DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEV 192 (283)
Q Consensus 141 ~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 192 (283)
.++.+.+++.+. ..+.+.|+|.+|+|||+||+.+++... .....++|++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh
Confidence 445555555422 227889999999999999999998765 22334556654
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.06 E-value=0.00065 Score=58.72 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=38.7
Q ss_pred cCCCCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+...+.++.|.+..++++.+++. -...+.+.|+|.+|+|||+||+.+++..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 33445668888887777776654 1345778999999999999999998753
No 38
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.05 E-value=0.00066 Score=54.99 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 138 RMSTLNDILGALKN---PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 138 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|+..++.+.+.+.. ....+|+|.|..|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 55667777777763 4568999999999999999999987653
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.03 E-value=0.001 Score=57.24 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=34.8
Q ss_pred CccccHHHHHHHHHHhc---------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALK---------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+++|.+..++.+.+.+. ......+.|+|.+|+|||+||+.+.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788877777765543 23455789999999999999998877653
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.02 E-value=0.00081 Score=59.59 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..+.++.|.+..++.+.+.+. ....+.+.|+|.+|+|||+||+.+.+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3445668899998888887763 2345778999999999999999998764
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.01 E-value=0.00098 Score=58.10 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=41.5
Q ss_pred cccCCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 126 IMSNKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 126 ~~~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+...+.++.|.+..++.|.+.+. ....+-+.++|.+|+|||+||+.+.+..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3344556778899999998888772 1234678999999999999999998764
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00071 Score=59.39 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.3
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|....+++|.+..++.+..++..+..+.+.++|+.|+||||+|+.+.+..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44456677888888888888887776669999999999999999998763
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.00 E-value=0.00051 Score=62.85 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=42.7
Q ss_pred CCCCCCccccHHHH---HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 129 NKDYAPFESRMSTL---NDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 129 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+.+++|.+..+ ..+...+..+..+.+.|+|.+|+||||||+.+.+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45567788998888 7777877777778899999999999999999998753
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.00081 Score=65.63 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=42.0
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++||+.+++.+++.|......-+.++|.+|+|||++|+.+.+..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 355689999999999999987666668899999999999999998875
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.98 E-value=0.00062 Score=67.35 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=42.9
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++||+.++..+++.|.....+-+.++|.+|+|||+||+.+.+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999987666678899999999999999999875
No 46
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.98 E-value=0.00089 Score=54.48 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcC--CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 140 STLNDILGALKN--PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 140 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++|.+.+.. ....+|+|+|..|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777663 4668999999999999999999987654
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.90 E-value=0.0012 Score=64.40 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=42.3
Q ss_pred CCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.+++||+.+++.+++.|......-+.++|.+|+|||+||+.+.+..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999987767778899999999999999998765
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.89 E-value=0.00096 Score=58.96 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCCccccHHHHHH---HHHHhcCCCc--eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLND---ILGALKNPDV--NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+++|++..++. +.+.+..+.. +.+.|+|++|+|||+||+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678899887655 5555554433 5899999999999999999998865
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.0013 Score=57.40 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred cCCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.....++.|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 34456678888888777776552 1234778999999999999999999865
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.00096 Score=56.01 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCCCCccccHHHHHHHHHH---hcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGA---LKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+..+.++.|.+..++++.+. +.. ...+-+.|+|.+|+||||||+.+.+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 34456678887766655443 322 123458899999999999999998764
No 51
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.81 E-value=0.0016 Score=56.60 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=42.1
Q ss_pred cCCCCCCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|..+.+++|.+..++.+.+++..+.. +.+.+.|.+|+|||++|+.+.+..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345567789999999999999986544 677788999999999999998764
No 52
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.75 E-value=0.00068 Score=52.83 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEEecCCchhhHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEV 174 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v 174 (283)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.75 E-value=0.0018 Score=57.93 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=41.0
Q ss_pred cCCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++..+.+++|.+..++.+.+++. ....+-+.|+|.+|+|||+||+.+.+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34456778999999999988873 1234788999999999999999998764
No 54
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.75 E-value=0.0009 Score=52.68 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.|+|++|+||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998754
No 55
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.68 E-value=0.0004 Score=53.09 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=31.9
Q ss_pred CccccHHHHHHHHHHhcC--CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 134 PFESRMSTLNDILGALKN--PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 467888888888777651 22334779999999999999998864
No 56
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.00098 Score=51.97 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 57
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.67 E-value=0.0019 Score=57.15 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+.++.|.+..++.|.+.+. ....+-|.++|.+|+|||+||+.+++..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3445668899888888887762 1233568899999999999999998764
No 58
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.67 E-value=0.0012 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999864
No 59
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.61 E-value=0.0021 Score=54.73 Aligned_cols=50 Identities=24% Similarity=0.197 Sum_probs=32.1
Q ss_pred CCCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+.++.|-+..+++|.+.+. + ...+-+.++|++|+|||||++.+....
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3445567777777777665442 1 112339999999999999999998754
No 60
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.60 E-value=0.0028 Score=52.99 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=32.1
Q ss_pred CCCCCCccccHHHHHHHHH---HhcC---------CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 129 NKDYAPFESRMSTLNDILG---ALKN---------PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+.++.|.+..+.++.+ .+.. .-.+-+.|+|.+|+|||||++.+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445567777655544433 3321 11223899999999999999999865
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.60 E-value=0.0013 Score=57.78 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCCCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALK-----NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....++|.+..++.+-..+. ......+.++|++|+||||||+.+.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44556787766666555443 2345789999999999999999998875
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.59 E-value=0.00094 Score=56.35 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=33.6
Q ss_pred CCCCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK---N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.+++|.+..++.+.+.+. . ...+-+.|+|.+|+|||+||+.+++...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45567777665555554432 1 2234477999999999999999988643
No 64
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.0013 Score=53.02 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998764
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0027 Score=57.65 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=40.4
Q ss_pred cCCCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
|...+.++.|-+..+++|.+.+. . ...+-|-++|++|.|||.||+.+.+...
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 34456678899888888776543 1 3467899999999999999999998653
No 66
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.58 E-value=0.0028 Score=57.84 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred cCCCCCCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++..+.++.|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34456678899988888887763 1245788999999999999999999865
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.57 E-value=0.0016 Score=54.84 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCCccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 132 YAPFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.+++|.+..+..+++.+. .....-+.|+|.+|+|||+||+.+++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4457788888888776664 2233567799999999999999998764
No 68
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.57 E-value=0.0022 Score=52.47 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.+...+.......|+|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555445567899999999999999999998774
No 69
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0015 Score=52.67 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.....+|+|+|+.|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999988764
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.55 E-value=0.0019 Score=55.35 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=35.9
Q ss_pred CccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALKN--------------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+..++.+...+.. ....-+.++|.+|+|||+||+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467998888888776643 234667899999999999999998764
No 71
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0014 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998753
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.51 E-value=0.0035 Score=53.03 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=33.2
Q ss_pred CccccHHHHHHHHH-------Hhc---CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILG-------ALK---NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+++|....++++++ .+. ....+-+.|+|.+|+|||+||+.+.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45566666555555 332 4456788999999999999999998864
No 73
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.51 E-value=0.0016 Score=56.92 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.0
Q ss_pred CCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 130 KDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+.+++|.+..+..+...+.....+-+.|+|.+|+|||+||+.+.+..
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3456688988766655444444334458999999999999999999864
No 74
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0017 Score=52.98 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 138 RMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 138 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+..+.+...+.....++|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555577899999999999999999998764
No 75
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.49 E-value=0.0012 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 76
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.49 E-value=0.0016 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.|.|+|+.|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 77
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.49 E-value=0.0017 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456799999999999999999998754
No 78
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.47 E-value=0.0021 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 79
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.47 E-value=0.0019 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..|.|.|+.|+||||+++.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 80
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0032 Score=57.10 Aligned_cols=49 Identities=27% Similarity=0.241 Sum_probs=38.0
Q ss_pred CCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+.++.|-+..+++|.+.+. -...+-|.++|++|.|||+||+.+.+...
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35567788888877766553 13567789999999999999999988653
No 81
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.0041 Score=52.83 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred cCCCCCCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 128 SNKDYAPFESRMSTLNDILGALK---N---------PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+...+.++.|.+..+.++.+... . .-.+-+.|+|..|+|||||++.+.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34445567787766555443322 1 11223899999999999999999765
No 82
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.44 E-value=0.0015 Score=52.76 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||||+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 83
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0043 Score=56.36 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=38.1
Q ss_pred CCCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.++.|.+..+++|.+.+. -...+-|.++|++|.|||+||+.+.+...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 335567788877777666553 13568899999999999999999988753
No 84
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.40 E-value=0.0024 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998653
No 85
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0017 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 86
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.40 E-value=0.004 Score=53.51 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+...+|+|+|..|+|||||++.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999877654
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.38 E-value=0.0023 Score=51.90 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|+|+|..|+|||||++.+.....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987643
No 88
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.37 E-value=0.0019 Score=51.02 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.|.|+|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998654
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.0043 Score=53.86 Aligned_cols=38 Identities=32% Similarity=0.296 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCC--CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 141 TLNDILGALKNP--DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 141 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+..++... ..+.+.|+|.+|+||||||+.+++..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344455544433 35788999999999999999998865
No 90
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.36 E-value=0.0022 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999865
No 91
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.35 E-value=0.0021 Score=50.93 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987654
No 92
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.35 E-value=0.0039 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|++|+|||||++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998653
No 93
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.34 E-value=0.0026 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+...+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999998753
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.34 E-value=0.0034 Score=48.30 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 146 LGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 146 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..|.+-....++|+|..|+|||||++.+++...
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333332567899999999999999999998764
No 95
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.33 E-value=0.0054 Score=49.71 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=33.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
...++.|+|.+|+|||||+.++.. .. -..++|++....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 346899999999999999999987 21 2467888877655555444
No 96
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.0044 Score=54.69 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHhc----CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 137 SRMSTLNDILGALK----NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 137 gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+...+++++.+. .+....|.|+|+.|+||||+++.+.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33455566666553 45567799999999999999998887654
No 97
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.32 E-value=0.003 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.|.|++|+||||+++.+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999988765
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.31 E-value=0.0024 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997654
No 99
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.31 E-value=0.0024 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346799999999999999999998764
No 100
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.30 E-value=0.0028 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|+|.|+.|+||||+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998654
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.30 E-value=0.0024 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998764
No 102
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.29 E-value=0.0023 Score=49.86 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987643
No 103
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.29 E-value=0.0023 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999987654
No 104
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.099 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987653
No 105
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.27 E-value=0.0025 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.27 E-value=0.0089 Score=49.18 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=34.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccCHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQDIRK 200 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~ 200 (283)
...++.|+|.+|+|||||+..+........ .-..++|++....++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~ 74 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 74 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH
Confidence 346999999999999999999987532111 135688998876544443
No 107
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.26 E-value=0.0024 Score=55.62 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+..+||+|.|-||+||||.+..+.--..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA 73 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 73 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence 4679999999999999999988876654
No 108
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.25 E-value=0.0021 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998764
No 109
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.23 E-value=0.0029 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+|+|+|..|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 110
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.23 E-value=0.0033 Score=50.60 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+|+|.|+.|+||||+++.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998653
No 111
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.21 E-value=0.0022 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=21.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998654
No 112
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.21 E-value=0.0057 Score=52.51 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHhcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++|.+..++.+...+.. .....+.++|.+|+|||+||+.+.+..
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 56888887777766652 123579999999999999999998865
No 113
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.21 E-value=0.0031 Score=49.73 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++++|+|..|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999988765
No 114
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0028 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0023 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998754
No 116
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0031 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||+++.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 117
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.18 E-value=0.0023 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred CceEEEEEecCCchhhHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
...+++|+|..|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 118
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0035 Score=50.52 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999988765
No 119
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.17 E-value=0.0028 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997653
No 120
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.17 E-value=0.0025 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=17.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999997653
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.17 E-value=0.0032 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
....|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 122
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.16 E-value=0.0033 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 123
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0058 Score=55.22 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=37.8
Q ss_pred CCCCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 130 KDYAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 130 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.++-|.++.+++|.+.+. . ...+-|-++|++|.|||.||+.+.+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 345567788877777666543 1 3468899999999999999999987643
No 124
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.13 E-value=0.0056 Score=56.00 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=36.3
Q ss_pred CCCccccHHHHHHHH---HHhcCC--CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 132 YAPFESRMSTLNDIL---GALKNP--DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~---~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+++|.+..++.+. +++..+ ..+-+.++|++|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 466889988776544 444433 336788999999999999999998764
No 125
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0026 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999997653
No 126
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0039 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998653
No 127
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.10 E-value=0.0036 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|++.|+.|+||||+++.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998654
No 128
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.08 E-value=0.0036 Score=52.43 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 129
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.08 E-value=0.0029 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.08 E-value=0.0055 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998754
No 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.07 E-value=0.0038 Score=51.04 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|.|.|+.|+||||+++.+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998764
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.07 E-value=0.012 Score=53.67 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCC-ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 141 TLNDILGALKNPD-VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 141 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+........ ..-+.|+|.+|+||||||+.+++...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444444333 67899999999999999999988653
No 133
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.05 E-value=0.093 Score=45.68 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 138 RMSTLNDILGALKNPDV-NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 138 r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++..+.+...+.++.. +.+.++|..|+|||++|+.+.+...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34556777777776654 5699999999999999999987643
No 134
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.05 E-value=0.0051 Score=53.15 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=35.6
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46788888888887775 2334557799999999999999998853
No 135
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.03 E-value=0.0036 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++|+|..|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988765
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.03 E-value=0.0036 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998543
No 137
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.02 E-value=0.0047 Score=49.95 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=25.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ 186 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 186 (283)
..+|+|.|+.|+||||+++.+...... .+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999887542 23444
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.01 E-value=0.016 Score=47.17 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=31.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccC
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQD 197 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~ 197 (283)
...+++|+|..|+|||||++.+........ .-...+|+.-...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 347999999999999999999987433211 124578887655443
No 139
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.00 E-value=0.0046 Score=49.94 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=25.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCe
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQ 186 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 186 (283)
..+|+|.|+.|+||||+++.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999886542 24454
No 140
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.00 E-value=0.0084 Score=55.40 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGALK-------------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.++.|.+..++++.+++. ....+-+.|+|.+|+|||+||+.+.+..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 34568899998888887764 2345678999999999999999998764
No 141
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.99 E-value=0.0035 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.99 E-value=0.0048 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 143
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.98 E-value=0.0045 Score=50.08 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998654
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.97 E-value=0.0041 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 145
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.97 E-value=0.0051 Score=53.52 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 133 APFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 133 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++|++..++.+...+..+ +-+.++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 34678888888888777653 368899999999999999998753
No 146
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.0027 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|+|.|..|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.96 E-value=0.0043 Score=53.92 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|+|+|..|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987654
No 148
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.94 E-value=0.0043 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 149
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.93 E-value=0.0047 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|.|.|+.|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997653
No 150
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.92 E-value=0.0049 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHH
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
....+|+|+|+.|+|||||++.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999999984
No 151
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.91 E-value=0.004 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+-|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998653
No 152
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.89 E-value=0.0046 Score=50.09 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998654
No 153
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.88 E-value=0.0054 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997753
No 154
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.88 E-value=0.0066 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999998764
No 155
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.87 E-value=0.0096 Score=52.61 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHhc-------------C--CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALK-------------N--PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++|.+..++.+...+. . ...+.+.++|.+|+|||++|+.+.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5688888888777762 1 134678999999999999999998754
No 156
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.86 E-value=0.0052 Score=50.24 Aligned_cols=26 Identities=19% Similarity=-0.001 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...|.|.|+.|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 157
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.86 E-value=0.01 Score=49.39 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 158
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0043 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998653
No 159
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.79 E-value=0.0058 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|.+|+|||||+..+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999987765
No 160
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.77 E-value=0.0058 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 161
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.77 E-value=0.0057 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+|+|.|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999865
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.77 E-value=0.0068 Score=49.77 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++|.|.|++|+||+|.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999987653
No 163
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.76 E-value=0.0064 Score=47.97 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
.+++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999877654
No 164
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.76 E-value=0.012 Score=52.02 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.2
Q ss_pred HHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 141 TLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 141 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...++++.+. .+...+|+|+|.+|+|||||+..+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3455565555 567789999999999999999998755
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.76 E-value=0.0057 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.022 Score=49.60 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=37.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCC----CCeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKL----FDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|.|.+|+|||||+.++......... -..++|++....++...+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3468999999999999999999876432110 24689999988776665543
No 167
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.007 Score=49.10 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999987654
No 168
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.74 E-value=0.0059 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.|+|.|..|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988753
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.73 E-value=0.0068 Score=47.72 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|.|+.|+||||+++.+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987653
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.72 E-value=0.0086 Score=52.19 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|.|..|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999976654
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.72 E-value=0.012 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
...+++++|.+|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 172
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.70 E-value=0.0064 Score=49.99 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998764
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.68 E-value=0.013 Score=53.90 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCCCccccHHHHHHHHHH---hcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 131 DYAPFESRMSTLNDILGA---LKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.++.|.++.++++.+. +.+ ...+-+.|+|++|+|||+||+.+.+..
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 455677888766555544 322 123458899999999999999998764
No 174
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.68 E-value=0.0073 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 175
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.66 E-value=0.033 Score=49.68 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=53.4
Q ss_pred HHHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhc-CCCCeEEEEEeCCcc-CHHHHHHHhCcEeEEeecchhHH
Q 038843 143 NDILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENE-KLFDQVIFAEVSQNQ-DIRKIQGEIGCKILLRARSEDTL 219 (283)
Q Consensus 143 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~-~~~~i~~~i~s~iivTTR~~~v~ 219 (283)
-+.++.+. -.....++|+|..|+|||||++.+.+....+ ..++ ++++-+++.. .+.++.+.+.+-|++.|-++...
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~ 240 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPAS 240 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHH
Confidence 45666665 3456789999999999999999998765432 2233 3457777664 46667777777788888776653
No 176
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.65 E-value=0.0075 Score=46.91 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++|+|..|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455799999999999999999998765
No 177
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0067 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 178
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.59 E-value=0.0077 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.0
Q ss_pred CceEEEEEecCCchhhHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.58 E-value=0.007 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
...+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 180
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.54 E-value=0.0089 Score=51.72 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+|+|.|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998754
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.53 E-value=0.033 Score=48.89 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=37.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|.|.+|+||||||.++........ .-..++|++....++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999999987643211 124688999988777665544
No 182
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.054 Score=46.72 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh-hc-CCCCeEEEEEeCC-ccCH
Q 038843 139 MSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE-NE-KLFDQVIFAEVSQ-NQDI 198 (283)
Q Consensus 139 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~ 198 (283)
+..++.+...+.++..+.+.++|+.|+||||+|..+.+... .. .|.| ..+++.+. ...+
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~i 64 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGI 64 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCH
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCH
Confidence 44566677777766688999999999999999999987521 11 1333 35566543 3443
No 183
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.51 E-value=0.015 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+.++|.+|+|||+||+.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 184
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.028 Score=48.74 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC---------CC-----CeEEEEEeCCccCHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK---------LF-----DQVIFAEVSQNQDIRKIQG 203 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~ 203 (283)
...++.|.|.+|+|||+||.++........ .. ..++|++....++...+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 457899999999999999999987532111 11 4688999988876665544
No 185
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.48 E-value=0.0094 Score=47.15 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++++|+|..|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999987654
No 186
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.48 E-value=0.0055 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=16.9
Q ss_pred CceEEEEEecCCchhhHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
...+++|+|+.|+|||||++.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 187
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.48 E-value=0.02 Score=52.95 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=34.9
Q ss_pred cCCCCCCccccHHHHHHHHHH---hcCC---------CceEEEEEecCCchhhHHHHHHHHh
Q 038843 128 SNKDYAPFESRMSTLNDILGA---LKNP---------DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 128 ~~~~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+...+.++.|.+..+.++.+. +.+. -.+-+.|+|.+|+||||||+.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344566788887766555443 3221 1234899999999999999999865
No 188
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.47 E-value=0.0072 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998754
No 189
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.45 E-value=0.021 Score=50.34 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCC---C-eEEEEEeCCccCH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLF---D-QVIFAEVSQNQDI 198 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~vs~~~~~ 198 (283)
...++.|+|..|+|||||+.++.......... . .++|++....+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 45899999999999999999998765211111 2 3588887665433
No 190
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.45 E-value=0.0082 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++|+|.|+.|+||||+++.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999997753
No 191
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.44 E-value=0.0061 Score=52.37 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+|+|.|..|+||||+|+.+.+..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998753
No 192
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.42 E-value=0.008 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+++|+|..|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988764
No 193
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.42 E-value=0.0098 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.41 E-value=0.0083 Score=48.93 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..|.|.|+.|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 195
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.40 E-value=0.0088 Score=49.68 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=27.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEEC
Confidence 456899999999999999999875443 334556553
No 196
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.40 E-value=0.011 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988765
No 197
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.39 E-value=0.0079 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+++|+|..|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999876
No 198
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.39 E-value=0.0089 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+++|+|..|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999998654
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.37 E-value=0.0065 Score=59.63 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.0
Q ss_pred CCCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 132 YAPFESRMSTLNDILGALKN-------------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.++.|.+..++++.+++.. .....|.|+|.+|+||||||+.+.+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45577887777777666541 345679999999999999999998753
No 200
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.36 E-value=0.022 Score=50.23 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=33.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDI 198 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 198 (283)
..+++.|.|.+|+||||||.++....... =..++|++....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence 45789999999999999999998765422 235788888766554
No 201
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.35 E-value=0.029 Score=49.57 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=36.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
...++.|.|.+|+|||||+.++....... =..++|++....++.. ..+.+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-ra~rl 109 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-YAKNL 109 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-HHHHc
Confidence 34799999999999999999998875522 1346788877666644 33444
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.02 Score=47.08 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
...++.|.|.+|+|||||+.++....... =..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 34689999999999999998887664421 235777776543
No 203
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.33 E-value=0.0088 Score=49.29 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 63 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFL 63 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 346899999999999999999875432 23455555
No 204
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.33 E-value=0.034 Score=48.16 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
.++.++..+ ....++.|.|.+|+||||||.++..+..... ..++|++...
T Consensus 57 ~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~ 106 (315)
T 3bh0_A 57 ELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 106 (315)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred HHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC
Confidence 344554323 2346899999999999999999987765332 5688888753
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.32 E-value=0.01 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|++|+||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997654
No 206
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.31 E-value=0.01 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.28 E-value=0.016 Score=47.13 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=28.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
..+++|.|.+|+|||||++.+........ ..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc
Confidence 46899999999999999999986654221 2456666543
No 208
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.28 E-value=0.011 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998764
No 209
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.27 E-value=0.012 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987643
No 210
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.26 E-value=0.015 Score=50.90 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+++|+|..|+|||||++.+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999987765
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.25 E-value=0.019 Score=47.84 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++.+.|.||+|||||+..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999987654
No 212
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.23 E-value=0.027 Score=51.41 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 140 STLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 140 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..+..++.++.+++ +.+.|.|.+|+|||+++..+......
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34455555555444 48999999999999999999887653
No 213
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.20 E-value=0.011 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 214
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.18 E-value=0.011 Score=49.06 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 215
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.14 E-value=0.026 Score=49.87 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=34.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIR 199 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (283)
..+++.|.|.+|+||||||.++....... =..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH
Confidence 44789999999999999999998775422 2357888887666543
No 216
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.14 E-value=0.013 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.13 E-value=0.026 Score=46.60 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=24.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....|+|.|+.|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998875
No 218
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.13 E-value=0.011 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+++|+|..|+|||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.13 E-value=0.016 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|.+|+||||++..+.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999987765
No 220
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.12 E-value=0.012 Score=49.74 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 456899999999999999999876532 23455555
No 221
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.12 E-value=0.028 Score=48.55 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 139 MSTLNDILGALKN---PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 139 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++.+.+++.+ .....+.|+|.+|+|||+||..+++...
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455555553 1256788999999999999999998754
No 222
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.09 E-value=0.012 Score=55.89 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCCCCCccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 129 NKDYAPFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 129 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+....+++|.+..++.+...+..+ ..+.|+|..|+||||||+.+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 344556888888887777766655 588999999999999999998764
No 223
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.09 E-value=0.014 Score=54.08 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=34.6
Q ss_pred CccccHHHHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+..++.+...+..+ .-+.++|.+|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 3668888888877776644 367899999999999999998754
No 224
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.08 E-value=0.011 Score=50.42 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..-.. ...+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEE
Confidence 446899999999999999999876432 33455554
No 225
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.07 E-value=0.012 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999998654
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.07 E-value=0.015 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||+..+.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999988765
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.06 E-value=0.017 Score=49.62 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=24.8
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
....++|+|+|-||+||||+|..+......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 456789999999999999999999877653
No 228
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.05 E-value=0.015 Score=49.08 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-....+++|+|..|+|||||++.+.....
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34567999999999999999999876543
No 229
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.04 E-value=0.019 Score=44.71 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 142 LNDILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 142 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..++.+.+.. .....|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445555555 66778999999999999999988743
No 230
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.03 E-value=0.014 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.|.++|.+|+|||||.+.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 231
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.03 E-value=0.011 Score=50.01 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..-.. ...+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE
Confidence 457899999999999999999986543 23455555
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.03 E-value=0.014 Score=48.69 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 233
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.03 E-value=0.025 Score=52.43 Aligned_cols=46 Identities=4% Similarity=-0.141 Sum_probs=35.1
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....|.+-.+.+.+... .....+|.+.|+.|+||||+|+.+.....
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34566666666666552 34567899999999999999999998876
No 234
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.027 Score=44.33 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 235
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.02 E-value=0.015 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+|.|.|++|+||+|.|+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999987653
No 236
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.01 E-value=0.014 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+++|+|..|+|||||.+.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 237
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.026 Score=44.34 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+.+ +.......|+|+|.+|+|||||.+.+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44566778999999999999999999854
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.01 E-value=0.032 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|.++|.+|+||||++..+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987665
No 239
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.01 E-value=0.014 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|.|+|+.|+||||||+.+....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998754
No 240
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.00 E-value=0.015 Score=46.70 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+.+-+.....+.-.|+++|.+|+|||||...+.++.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3344444445556788999999999999999888653
No 241
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.00 E-value=0.03 Score=47.81 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=29.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCC-eEEEEEeC
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFD-QVIFAEVS 193 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs 193 (283)
...+++|.|.+|+|||||++.+....... -. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 44689999999999999999998876533 22 45666654
No 242
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.00 E-value=0.012 Score=49.01 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+.--.. ...+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 446899999999999999999986532 23455555
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.99 E-value=0.014 Score=49.43 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEE
Confidence 457899999999999999999876542 23455555
No 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.99 E-value=0.012 Score=49.55 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE
Confidence 446899999999999999999976543 23455555
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.98 E-value=0.045 Score=49.10 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=34.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcC----CCCeEEEEEeCCccCHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEK----LFDQVIFAEVSQNQDIRKI 201 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i 201 (283)
...++.|+|.+|+|||||+.++.-...... .-..++|++....++...+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 347999999999999999998764322111 2245889987766554443
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.97 E-value=0.022 Score=55.69 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 132 YAPFESRMSTLNDILGALK----N---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 132 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.++.|.+..+++|.+.+. . ...+-|.++|++|.|||+||+.+.+..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3446666665555554432 1 246789999999999999999998764
No 247
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.95 E-value=0.014 Score=48.29 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.94 E-value=0.027 Score=51.12 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
..++|.++|.+|+||||++..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999877654
No 249
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.92 E-value=0.023 Score=53.17 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=32.8
Q ss_pred ccccHHHHHHHHHHhc------CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 135 FESRMSTLNDILGALK------NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 135 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.|.+...+.+.+.+. +.....+.++|.+|+||||||+.+....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5676666665544332 2356789999999999999999998764
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.92 E-value=0.013 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=26.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 346899999999999999999876543 23455555
No 251
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.92 E-value=0.019 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998775
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.92 E-value=0.011 Score=48.35 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=26.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 68 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIY 68 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEE
Confidence 346899999999999999999976532 23455554
No 253
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.91 E-value=0.015 Score=49.09 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=26.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. . .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEE
Confidence 456899999999999999999986542 1 455555
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.90 E-value=0.015 Score=44.93 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 255
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.87 E-value=0.015 Score=48.89 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 456899999999999999999976532 23455555
No 256
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.87 E-value=0.015 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|.++|.+|+|||||.+.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998663
No 257
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.87 E-value=0.059 Score=43.31 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.8
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
.|+|=|.-|+||||.++.+.+....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3778899999999999999988763
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.86 E-value=0.021 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|.+|+||||++..+.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987765
No 259
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.85 E-value=0.016 Score=49.27 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEE
Confidence 456899999999999999999976543 23455555
No 260
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.84 E-value=0.015 Score=49.30 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++.|+|.+|+|||||+.++.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999987544
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.84 E-value=0.017 Score=49.93 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++|+|..|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998654
No 262
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.83 E-value=0.016 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++++|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.81 E-value=0.019 Score=52.84 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 457999999999999999999987765
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.81 E-value=0.018 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 265
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.81 E-value=0.016 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 266
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.80 E-value=0.064 Score=46.55 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=36.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
+++-|.|.+|+|||||+.++.........=..++|++....++... .+++
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-a~~l 78 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-LRSM 78 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-HHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-HHHh
Confidence 3789999999999999999887755221124578999887776543 4444
No 267
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.80 E-value=0.017 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998653
No 268
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.80 E-value=0.037 Score=51.79 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHh--cCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 137 SRMSTLNDILGAL--KNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 137 gr~~~~~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+....+.+.... .-....+|+|+|+.|+|||||++.+.....
T Consensus 350 ~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 350 SFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3444444444433 123457899999999999999999998765
No 269
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.79 E-value=0.06 Score=52.39 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=35.5
Q ss_pred CccccHHHHHHHHHHhcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+..++.+...+.. .....+.++|.+|+|||+||+.+.+..
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888888777777651 122468999999999999999998875
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.78 E-value=0.029 Score=50.89 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|.++|.+|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 271
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.78 E-value=0.017 Score=48.92 Aligned_cols=35 Identities=26% Similarity=0.147 Sum_probs=26.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE
Confidence 446899999999999999999875432 23455555
No 272
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.77 E-value=0.012 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 273
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.75 E-value=0.028 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHhc-CCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 145 ILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 145 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+++.+. ......|+++|.+|+|||||.+.+.+.
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455553 445567899999999999999998753
No 274
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.75 E-value=0.015 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||.+.+..-..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999886543
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.75 E-value=0.022 Score=49.20 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998653
No 276
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.75 E-value=0.019 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+++.|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 367789999999999999999876
No 277
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.74 E-value=0.018 Score=45.21 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...|+++|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 278
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.74 E-value=0.019 Score=49.74 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.++|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.73 E-value=0.028 Score=44.07 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.....|+|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998765
No 280
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.72 E-value=0.016 Score=44.35 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|.|+|.+|+|||||.+.+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 281
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.71 E-value=0.016 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.68 E-value=0.016 Score=49.46 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=26.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+..-.. ...+.+++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~ 81 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLF 81 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEEC
Confidence 456899999999999999999986543 234555553
No 283
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.66 E-value=0.019 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 284
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.63 E-value=0.018 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+|+|.+|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999987654
No 285
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.61 E-value=0.016 Score=45.60 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 286
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.60 E-value=0.077 Score=42.93 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=25.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeE
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQV 187 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~ 187 (283)
..|+|-|.-|+||||+++.+.+... ..++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEE
Confidence 4688999999999999999998875 345443
No 287
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.59 E-value=0.017 Score=50.01 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++|+|..|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 355789999999999999999987543
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.59 E-value=0.023 Score=43.94 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.....|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999764
No 289
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.59 E-value=0.055 Score=45.28 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=27.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
++|+|.|-||+||||+|..+....... .. .++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-CC-cEEEEcCC
Confidence 578889999999999999998877632 22 34555543
No 290
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.58 E-value=0.038 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=26.7
Q ss_pred HHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 143 NDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 143 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+++.+. -....+++|+|+.|+|||||++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34444442 345679999999999999999999865
No 291
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.57 E-value=0.018 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.56 E-value=0.028 Score=48.31 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|.+|+||||++..+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987765
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.55 E-value=0.034 Score=50.26 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=25.3
Q ss_pred cCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 150 KNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 150 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
......+++|+|..|+|||||.+.+.....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446668999999999999999999987653
No 294
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.53 E-value=0.019 Score=43.76 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..-|+++|.+|+|||||.+.+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999999998764
No 295
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.53 E-value=0.05 Score=48.25 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=34.0
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIR 199 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (283)
...++.|.|.+|+||||||.++....... =..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH
Confidence 34688999999999999999998775422 2367889887665543
No 296
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.53 E-value=0.023 Score=45.85 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|.++|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345788999999999999999998764
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.52 E-value=0.042 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..++|+|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 298
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.49 E-value=0.042 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+..+|+|+|.+|+|||||.+.+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 299
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.47 E-value=0.032 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++|+|.|.||+||||+|..+.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 46889999999999999999987765
No 300
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.45 E-value=0.025 Score=44.60 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|+|.+|+|||||...+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999997653
No 301
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.44 E-value=0.021 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 302
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.42 E-value=0.02 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+|+|.+|+|||||.+.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 303
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.41 E-value=0.027 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHH
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3556999999999999999999987
No 304
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.41 E-value=0.049 Score=51.24 Aligned_cols=37 Identities=5% Similarity=-0.004 Sum_probs=27.8
Q ss_pred HHHHHHh--cCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 143 NDILGAL--KNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 143 ~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
+.+.+.+ ......+|.|.|++|+||||+|+.+.....
T Consensus 383 r~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 383 KILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp HHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3444444 234557899999999999999999987754
No 305
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.39 E-value=0.026 Score=51.28 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=34.3
Q ss_pred CccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALKN--------------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++|.+..++.+...+.. ...+-|.++|++|+||||+|+.+.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366777777766555421 1346789999999999999999998764
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.38 E-value=0.021 Score=43.41 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999987653
No 307
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.38 E-value=0.025 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 308
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.38 E-value=0.022 Score=44.64 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|.+|+|||||.+.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999998753
No 309
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.37 E-value=0.021 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998664
No 310
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.37 E-value=0.024 Score=43.18 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.1
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-|+++|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997653
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.37 E-value=0.023 Score=43.81 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|.+|+|||||.+.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568999999999999999997653
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.36 E-value=0.021 Score=43.75 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+++|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998663
No 313
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.36 E-value=0.034 Score=45.18 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCC-CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 141 TLNDILGALKNP-DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 141 ~~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+..+..++..- ..+.+.|+|++|+||||+|..+.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555555432 23479999999999999999888764
No 314
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.34 E-value=0.027 Score=49.75 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....+++|+|..|+|||||.+.+....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445699999999999999999886654
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.32 E-value=0.022 Score=43.57 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+++|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.32 E-value=0.022 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+++|+|..|+|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999754
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.022 Score=43.58 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-.|+++|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 318
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.29 E-value=0.024 Score=43.87 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|..|+|||||.+.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999998763
No 319
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.28 E-value=0.029 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.++.+|+|..|+|||||+..++--
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348899999999999999999753
No 320
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.28 E-value=0.061 Score=44.19 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=28.5
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccC
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQD 197 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 197 (283)
.|+|.|.||+||||+|..+....... . ..++-|+.....+
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~~~ 41 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASD-Y-DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTT-C-SCEEEEEECTTSC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC-C-CeEEEEeCCCCcC
Confidence 36779999999999999998887633 2 3355566544333
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.26 E-value=0.03 Score=43.98 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998764
No 322
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.25 E-value=0.027 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999997653
No 323
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.24 E-value=0.024 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|+++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5799999999999999988543
No 324
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.23 E-value=0.024 Score=43.96 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999987753
No 325
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.23 E-value=0.025 Score=43.24 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999997653
No 326
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.22 E-value=0.027 Score=44.69 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=24.9
Q ss_pred HHHhcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 146 LGALKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 146 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+.+.....-.|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 21 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp GGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred HHHhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 33344555677999999999999999998653
No 327
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.19 E-value=0.046 Score=47.89 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-....+++|+|.+|+|||||.+.+...
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999754
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.16 E-value=0.025 Score=43.73 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999997653
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.15 E-value=0.051 Score=47.58 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.....+|+|+|.+|+|||||+..+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998654
No 330
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.14 E-value=0.025 Score=44.59 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999998887653
No 331
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.13 E-value=0.034 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||||..+....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999998653
No 332
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.13 E-value=0.033 Score=49.46 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-....+++|+|..|+|||||++.+.....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567999999999999999999977543
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.12 E-value=0.029 Score=49.63 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++|+|..|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987644
No 334
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.12 E-value=0.031 Score=49.37 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|+.|+|||||.+.+.--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 335
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.12 E-value=0.03 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 336
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.12 E-value=0.072 Score=43.76 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
......|.|.|..|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445678999999999999999999987654
No 337
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.11 E-value=0.026 Score=43.08 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-.|+++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999865
No 338
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.10 E-value=0.025 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999853
No 339
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.10 E-value=0.035 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+++++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999987765
No 340
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.10 E-value=0.028 Score=43.90 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|.|+|.+|+|||||.+.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998664
No 341
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.06 E-value=0.028 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+...|+++|.+|+|||||.+.+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999874
No 342
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.06 E-value=0.028 Score=44.19 Aligned_cols=24 Identities=33% Similarity=0.130 Sum_probs=20.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999877654
No 343
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.04 E-value=0.027 Score=43.97 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998764
No 344
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.04 E-value=0.027 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.02 E-value=0.031 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+.|.|.|..|+||||||..+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999865
No 346
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.01 E-value=0.017 Score=48.49 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|.|..|+||||+++.+....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999887654
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.01 E-value=0.028 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998663
No 348
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.01 E-value=0.028 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3568999999999999999988654
No 349
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.00 E-value=0.046 Score=44.20 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=23.4
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+.+..+|+|+||.|+||+|.|..+.+..
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 3456899999999999999999886643
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.99 E-value=0.025 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.|+|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999998753
No 351
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.99 E-value=0.03 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-.|+|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 352
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.98 E-value=0.037 Score=51.49 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.++|++|+||||+|+.+.....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999976653
No 353
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.97 E-value=0.029 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988664
No 354
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.95 E-value=0.053 Score=46.68 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
++++.+.+. ..+++++|..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345555554 3588999999999999999998 54
No 355
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.93 E-value=0.028 Score=44.01 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 556788999999999999999998654
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.92 E-value=0.03 Score=49.45 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 357
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.035 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|.+|+|||||...+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 358
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.91 E-value=0.032 Score=43.40 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 359
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.91 E-value=0.03 Score=43.59 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 360
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.91 E-value=0.024 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999875
No 361
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.89 E-value=0.022 Score=45.65 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=22.5
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.....|+|+|..|+|||||.+.+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445689999999999999999886543
No 362
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.88 E-value=0.12 Score=42.76 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCC
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFD 185 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 185 (283)
...|.|.|..|+||||+++.+...... .++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 468999999999999999999988653 3455
No 363
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.88 E-value=0.04 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+++|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997653
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.88 E-value=0.035 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45689999999999999999998654
No 365
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.85 E-value=0.04 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+|+|.|+.|+||||+++.+....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997764
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.85 E-value=0.031 Score=43.76 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||...+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998653
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.84 E-value=0.031 Score=43.47 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|.|+|.+|+|||||.+.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998754
No 368
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.83 E-value=0.036 Score=49.07 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.83 E-value=0.033 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44689999999999999999998654
No 370
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.82 E-value=0.054 Score=42.99 Aligned_cols=25 Identities=20% Similarity=-0.081 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++.|+|..|+||||++..+..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977766543
No 371
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.82 E-value=0.09 Score=45.95 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHH
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
+...+++.+.|.||+||||+|..+....... =..++-|+.....++...+
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhHHh
Confidence 4456788889999999999999998776532 1235566666555555544
No 372
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.81 E-value=0.086 Score=49.30 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.7
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 134 PFESRMSTLNDILGALK--NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
..+.|.+-.+.+.+..- .....+|.+.|++|+||||+|+.+.....
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 34455555566666552 34467899999999999999999987644
No 373
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.80 E-value=0.032 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.80 E-value=0.031 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 375
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.80 E-value=0.031 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|..|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998753
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.78 E-value=0.032 Score=44.33 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999997654
No 377
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.76 E-value=0.034 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
....|+|+|.+|+|||||.+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999875
No 378
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.72 E-value=0.035 Score=44.64 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..--|+|+|.+|+|||||.+.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998763
No 379
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.034 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998654
No 380
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.035 Score=43.85 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.72 E-value=0.033 Score=44.33 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..-.|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998764
No 382
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.72 E-value=0.034 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.72 E-value=0.039 Score=49.06 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999998653
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.71 E-value=0.032 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998765
No 385
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.064 Score=44.01 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=32.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
...++.|.|.+|+|||+||.++..+...+ .-..+++++.... ...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~--~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER--ARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC--HHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC--HHHHHHHH
Confidence 34689999999999999999976543221 2234666666533 44444443
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.70 E-value=0.14 Score=41.69 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=26.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeE
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQV 187 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~ 187 (283)
...|.|.|+.|+||||+++.+.+.... ..+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc
Confidence 468899999999999999999887653 245543
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.69 E-value=0.038 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.--|+|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.69 E-value=0.039 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44689999999999999999998654
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.043 Score=43.42 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...--|+|+|.+|+|||||...+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 445678999999999999999998763
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.68 E-value=0.081 Score=47.82 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+|+++|.+|+||||++..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999988765
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.67 E-value=0.029 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+.--.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.66 E-value=0.032 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.7
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998753
No 393
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.04 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35678999999999999999998764
No 394
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.63 E-value=0.035 Score=43.72 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998763
No 395
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.63 E-value=0.028 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.1
Q ss_pred CceEEEEEecCCchhhHHHHHHH
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~ 175 (283)
..-.|+|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999984
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.61 E-value=0.034 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....++|+|..|+|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998754
No 397
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.038 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.-.|+|+|.+|+|||||.+.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 398
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.57 E-value=0.042 Score=43.36 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999874
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.57 E-value=0.037 Score=43.55 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+|+|.+|+|||||...+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 400
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.56 E-value=0.34 Score=44.30 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh-------------CcE
Q 038843 144 DILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI-------------GCK 208 (283)
Q Consensus 144 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i-------------~s~ 208 (283)
+.++.|. =...+.++|.|-+|+|||+|++.+.++... .+-+.++++-+++.. .+.++++.+ .+-
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 3666665 245578999999999999999999887531 345778888887775 355565555 344
Q ss_pred eEEeecchhH
Q 038843 209 ILLRARSEDT 218 (283)
Q Consensus 209 iivTTR~~~v 218 (283)
+|+.|-++..
T Consensus 221 vV~~t~d~p~ 230 (482)
T 2ck3_D 221 LVYGQMNEPP 230 (482)
T ss_dssp EEEECTTSCH
T ss_pred EEEECCCCCH
Confidence 5666666554
No 401
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.55 E-value=0.042 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
-.++|.|++|+||||+|+.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4679999999999999999987653
No 402
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.55 E-value=0.04 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.....|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999765
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.55 E-value=0.037 Score=43.54 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+|+|..|+|||||.+.+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998764
No 404
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.55 E-value=0.045 Score=50.12 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+|.++|++|+||||+++.+.....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456889999999999999999987754
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.52 E-value=0.046 Score=48.08 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 145 ILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 145 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.++.+. =....+++|+|..|+|||||.+.+.+...
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344443 23557999999999999999999998864
No 406
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.50 E-value=0.083 Score=51.33 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred CccccHHHHHHHHHHhcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+..++.+...+.. .....+.++|.+|+|||+||+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888887777766641 233578999999999999999998765
No 407
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.50 E-value=0.039 Score=43.38 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+|+|.+|+|||||...+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998764
No 408
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.49 E-value=0.042 Score=44.14 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=21.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998754
No 409
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.48 E-value=0.038 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999977664
No 410
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.47 E-value=0.26 Score=44.97 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=46.3
Q ss_pred HHHHhcC-CCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh-------CcEeEEeecc
Q 038843 145 ILGALKN-PDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI-------GCKILLRARS 215 (283)
Q Consensus 145 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i-------~s~iivTTR~ 215 (283)
.++.|.. ...+.++|+|.+|+|||||++.+..+.... +-+.++++.+++.. ...+++..+ .+-+|+.|-+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~ 219 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN 219 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC
Confidence 3444441 123468999999999999999998876532 22556777777664 455666655 3445555554
Q ss_pred hh
Q 038843 216 ED 217 (283)
Q Consensus 216 ~~ 217 (283)
..
T Consensus 220 d~ 221 (473)
T 1sky_E 220 EP 221 (473)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.46 E-value=0.039 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 412
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.46 E-value=0.052 Score=44.73 Aligned_cols=30 Identities=13% Similarity=-0.041 Sum_probs=23.2
Q ss_pred EEEEEecCCchhhHHHHHHHHhhhhcCCCCe
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKAENEKLFDQ 186 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 186 (283)
.|.+.|.||+||||+|..+...... ..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCE
Confidence 4778899999999999998877653 23444
No 413
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.46 E-value=0.13 Score=45.25 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCceEEEEEecCCchhhHHHHHHHHhhhh-cCCCCeEEEEEeCCccCHHHHH
Q 038843 151 NPDVNMLGIYGMGGIRKTTLPKEVARKAEN-EKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 151 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
+...+++.+.|.||+||||+|..+...... ... ..++-|+.....++...+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g-~~vllid~D~~~~l~~~~ 66 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN-EQFLLISTDPAHNLSDAF 66 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT-SCEEEEECCSSCHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCChHHHh
Confidence 556689999999999999999999876651 111 234555555444444443
No 414
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.43 E-value=0.039 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|+|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998755
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=44.03 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|.+|+|||||...+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.42 E-value=0.049 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999765
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.41 E-value=0.041 Score=43.26 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|+|..|+|||||...+.+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999997653
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.041 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.40 E-value=0.04 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|.|+|..|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.38 E-value=0.17 Score=41.10 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
...|.+-|..|+||||+++.+.+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999988753
No 421
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.38 E-value=0.039 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..+.|+|+|.+|+|||||.+.+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4688999999999999999999865
No 422
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.38 E-value=0.089 Score=44.63 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHHHHHhcC------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 141 TLNDILGALKN------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 141 ~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++++.+.|.. .....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 34555555542 245789999999999999999998654
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.37 E-value=0.04 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-.|+|+|..|+|||||...+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.34 E-value=0.044 Score=43.70 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998653
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.34 E-value=0.039 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=20.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999997653
No 426
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.31 E-value=0.072 Score=45.75 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
++++...+. ..+++|+|+.|+|||||.+.+.....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccccc
Confidence 345555554 34889999999999999999986543
No 427
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.30 E-value=0.097 Score=41.63 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=26.7
Q ss_pred eEEEEE-ecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 038843 155 NMLGIY-GMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQ 194 (283)
Q Consensus 155 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 194 (283)
++|+|+ +.||+||||+|..+....... .. .++-++...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~-g~-~vlliD~D~ 40 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS-GY-NIAVVDTDP 40 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT-TC-CEEEEECCT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC-CC-eEEEEECCC
Confidence 578887 789999999999998876532 12 344555543
No 428
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.30 E-value=0.051 Score=44.79 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 180 (283)
....|.|.|+.|+||||+++.+.+....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988653
No 429
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.30 E-value=0.053 Score=48.51 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=26.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAE 191 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 191 (283)
...+++|+|..|+|||||.+.+.--.. ..+.+++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~ 80 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQID 80 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEES
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEEC
Confidence 457899999999999999999986432 24556554
No 430
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.046 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+|+|..|+|||||...+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998763
No 431
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.28 E-value=0.042 Score=43.64 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|+|..|+|||||...+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 345678999999999999999997653
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.046 Score=43.75 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 433
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.23 E-value=0.05 Score=44.76 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|+|.+|+|||||.+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345789999999999999999998753
No 434
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.23 E-value=0.49 Score=43.41 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=52.1
Q ss_pred HHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc-CHHHHHHHh--------------CcE
Q 038843 145 ILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ-DIRKIQGEI--------------GCK 208 (283)
Q Consensus 145 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i--------------~s~ 208 (283)
.++.|. =...+.++|.|-+|+|||+|++.+.++... .+-+.++++-+++.. .+.++++.+ .+-
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 566665 345678999999999999999999887531 345788899887775 355666665 245
Q ss_pred eEEeecchhHH
Q 038843 209 ILLRARSEDTL 219 (283)
Q Consensus 209 iivTTR~~~v~ 219 (283)
+++.|-++...
T Consensus 234 vV~~t~d~p~~ 244 (498)
T 1fx0_B 234 LVYGQMNEPPG 244 (498)
T ss_dssp EEEECTTSCHH
T ss_pred EEEeCCCCCHH
Confidence 56666665543
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.21 E-value=0.044 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=20.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..-.|+|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999765
No 436
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.16 E-value=0.049 Score=43.44 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.-.|+|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 457899999999999999999765
No 437
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.14 E-value=0.05 Score=43.61 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..--|+|+|.+|+|||||...+.+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998653
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.10 E-value=0.054 Score=42.69 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|..|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999987653
No 439
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.10 E-value=0.036 Score=44.75 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.....|+|+|..|+|||||...+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345788999999999999999998764
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.09 E-value=0.051 Score=43.25 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998753
No 441
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.047 Score=49.98 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....+++|+|..|+|||||++.+..-..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 3557899999999999999999987643
No 442
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.04 E-value=0.11 Score=43.83 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCC--CceEEEEEecCCchhhHHHHHHHHh
Q 038843 141 TLNDILGALKNP--DVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 141 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...-+..||... ...-+.++|++|.|||.||..+.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 345567777643 3457999999999999999999875
No 443
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.02 E-value=0.048 Score=53.47 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=37.0
Q ss_pred CCCCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 131 DYAPFESRMSTLNDILGALKN-------------PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 131 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++.|.+..++.+.+.+.. .....+.++|.+|+|||+||+.+.+...
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 345567777777777776541 1346688999999999999999998754
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.01 E-value=0.031 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=10.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999988755
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.99 E-value=0.052 Score=47.93 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++|+|..|+|||||.+.+....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3589999999999999999998654
No 446
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.99 E-value=0.064 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999997653
No 447
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.99 E-value=0.091 Score=51.84 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=35.0
Q ss_pred CccccHHHHHHHHHHhcC---------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 134 PFESRMSTLNDILGALKN---------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 134 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.++|.+..++.+...+.. .....+.|+|..|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 367888887777766641 123578999999999999999998765
No 448
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.95 E-value=0.084 Score=43.34 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999997654
No 449
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.95 E-value=0.063 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+|.+.|+.|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.95 E-value=0.11 Score=46.06 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCceEEEEE-ecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 152 PDVNMLGIY-GMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 152 ~~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
...++|+|+ |.||+||||+|..+......+ .. .++-++..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~-g~-rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM-GK-KVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH-TC-CEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC-CC-CEEEEECC
Confidence 457899998 599999999999998776533 22 35566644
No 451
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.051 Score=43.40 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998653
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.93 E-value=0.038 Score=48.29 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...++|+|..|+|||||++.+..-..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999987643
No 453
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.92 E-value=0.05 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred EEEEecCCchhhHHHHHHHHh
Q 038843 157 LGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 157 i~I~G~gGiGKTtLa~~v~~~ 177 (283)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 454
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.91 E-value=0.16 Score=41.00 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=27.0
Q ss_pred EEEEE-ecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q 038843 156 MLGIY-GMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQ 196 (283)
Q Consensus 156 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 196 (283)
+|+|+ +.||+||||+|..+..-.... . .+.-++.....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~-g--~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ-G--ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT-S--CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc-C--CEEEEECCCCC
Confidence 56664 889999999999998877633 2 45566654443
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.91 E-value=0.12 Score=43.32 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+++|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45778999999999999999998764
No 456
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.87 E-value=0.054 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.+.|+|+|.+|+|||||.+.+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999865
No 457
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.84 E-value=0.043 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHhh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-+.++|.+|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999998653
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.056 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.1
Q ss_pred ceEEEEEecCCchhhHHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.-.|+|+|.+|+|||||.+.+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 459
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.82 E-value=0.037 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
-.|+|+|..|+|||||.+.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999998765
No 460
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.81 E-value=0.055 Score=43.69 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999997753
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.79 E-value=0.12 Score=43.52 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
....|+++|.+|+|||||...+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998754
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.75 E-value=0.083 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...|.+-|..|+||||+++.+.+...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998775
No 463
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.74 E-value=0.056 Score=42.70 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
--|+|+|..|+|||||.+.+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997653
No 464
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.68 E-value=0.12 Score=47.02 Aligned_cols=52 Identities=10% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
.++.+...+. ...++.|.|.+|+|||||+.++......... ..++|++....
T Consensus 192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~s 243 (454)
T 2r6a_A 192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEMS 243 (454)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSSC
T ss_pred HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCCC
Confidence 4555553332 3468999999999999999999887653221 25777776543
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.65 E-value=0.088 Score=41.19 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...-.|+|+|.+|+|||||...+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 55677999999999999999998543
No 466
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.65 E-value=0.18 Score=43.72 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=30.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQ 202 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 202 (283)
.++...|.||+||||+|..+....... . ..++-|+.....++...+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G-~rVLlvD~D~~~~l~~~l 60 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-G-KKTLVISTDPAHSLSDSL 60 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T-CCEEEEECCSSCCHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-C-CcEEEEeCCCCcCHHHHh
Confidence 556667999999999999998776532 1 234555655444554443
No 467
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.62 E-value=0.073 Score=48.34 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.....++|+|..|+|||||++.+.+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4557899999999999999999998754
No 468
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.50 E-value=0.054 Score=43.55 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
.--|+|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998764
No 469
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.50 E-value=0.064 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEecCCchhhHHHHHHHHh
Q 038843 156 MLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 156 vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
No 470
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.50 E-value=0.15 Score=43.64 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...+.|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35688999999999999999999765
No 471
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.48 E-value=0.038 Score=47.76 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..+++|+|..|+|||||.+.+....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999997543
No 472
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.42 E-value=0.074 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57899999999999999999765
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.41 E-value=0.093 Score=40.06 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHH
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVAR 176 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~ 176 (283)
.++.+|+|..|+|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999864
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.39 E-value=0.067 Score=49.97 Aligned_cols=27 Identities=41% Similarity=0.506 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.++....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999987643
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.37 E-value=0.067 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.+.-..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998643
No 476
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.35 E-value=0.14 Score=46.43 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHhc----C-------CCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 137 SRMSTLNDILGALK----N-------PDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 137 gr~~~~~~l~~~l~----~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
|.++.++.+.+.+. . .....|+|+|.+|+|||||.+.+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 55666666666553 1 123589999999999999999998764
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.33 E-value=0.084 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
..-|.|.|.+|+||||||..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457889999999999999998874
No 478
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.31 E-value=0.17 Score=45.27 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=15.1
Q ss_pred CCceEEEEE-ecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIY-GMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~-G~gGiGKTtLa~~v~~~~~ 179 (283)
...++|+|+ |-||+||||+|..+.....
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 466888887 8999999999988876654
No 479
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.26 E-value=0.17 Score=45.99 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
.++.++..+. ...++.|.|.+|+||||||.++..+...... ..++|++...+
T Consensus 189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~~ 240 (444)
T 2q6t_A 189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEMP 240 (444)
T ss_dssp HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSSC
T ss_pred hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCCC
Confidence 3555553332 3468899999999999999999887653211 34777776533
No 480
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.26 E-value=0.16 Score=44.40 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCccCHHHHHHHh
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQNQDIRKIQGEI 205 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 205 (283)
.++++...+. ...++.|.|.+|+||||||.++..+... +=..++|++... +...+...+
T Consensus 35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHH
Confidence 3445544332 3368899999999999999999887653 123567777643 344554444
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.18 E-value=0.075 Score=48.84 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.+++|+|..|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999997654
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.074 Score=43.09 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.--|+|+|.+|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997653
No 483
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.08 E-value=0.075 Score=47.04 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
..++|+|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999998654
No 484
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.08 E-value=0.064 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||++.++.-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 485
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.08 E-value=0.086 Score=49.21 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+....
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999997643
No 486
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.07 E-value=0.1 Score=42.81 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.0
Q ss_pred CceEEEEE-ecCCchhhHHHHHHHHhhhh
Q 038843 153 DVNMLGIY-GMGGIRKTTLPKEVARKAEN 180 (283)
Q Consensus 153 ~~~vi~I~-G~gGiGKTtLa~~v~~~~~~ 180 (283)
..++|+|+ +-||+||||+|..+......
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 31 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ 31 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh
Confidence 46788887 67999999999999887663
No 487
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.07 E-value=0.19 Score=45.63 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q 038843 141 TLNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFAEVSQN 195 (283)
Q Consensus 141 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 195 (283)
.+++++..+. ...++.|.|.+|+||||||.++..+..... ..++|++...+
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms 236 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG 236 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSC
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCC
Confidence 4555554332 346899999999999999999988866431 35777776543
No 488
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.06 E-value=0.086 Score=49.66 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.7
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhhhcCCCCeEEEE
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAENEKLFDQVIFA 190 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 190 (283)
...+++|+|..|+|||||++.+..-.. ...+.+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~ 402 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILM 402 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEE
Confidence 457899999999999999999976543 23455554
No 489
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.05 E-value=0.07 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchhhHHHHHHHHhh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
.-.|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999997653
No 490
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.02 E-value=0.36 Score=39.51 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.3
Q ss_pred eEEEEEecCCchhhHHHHHHH
Q 038843 155 NMLGIYGMGGIRKTTLPKEVA 175 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~ 175 (283)
+.+.|+|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 588999999999998665554
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.26 E-value=0.028 Score=44.82 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=22.9
Q ss_pred hcCCCceEEEEEecCCchhhHHHHHHHHh
Q 038843 149 LKNPDVNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 149 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
+.....-.|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33445567899999999999999888654
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.93 E-value=0.081 Score=50.15 Aligned_cols=27 Identities=41% Similarity=0.506 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+.....
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987543
No 493
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.92 E-value=0.085 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
...+++|+|..|+|||||++.+..-..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999986543
No 494
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.92 E-value=0.16 Score=42.34 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCCceEEEEE-ecCCchhhHHHHHHHHhhhhcCCCCeEEEEEeC
Q 038843 151 NPDVNMLGIY-GMGGIRKTTLPKEVARKAENEKLFDQVIFAEVS 193 (283)
Q Consensus 151 ~~~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 193 (283)
....++|+|. +-||+||||+|..+..... + .. .++-|+..
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g~-~VlliD~D 64 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-K-NN-KVLLIDMD 64 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-TS-CEEEEEEC
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-C-CC-CEEEEECC
Confidence 3457888885 8899999999999988877 3 33 34555554
No 495
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.89 E-value=0.093 Score=44.43 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhhHHHHHHHHh
Q 038843 154 VNMLGIYGMGGIRKTTLPKEVARK 177 (283)
Q Consensus 154 ~~vi~I~G~gGiGKTtLa~~v~~~ 177 (283)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357899999999999999999864
No 496
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.88 E-value=0.19 Score=41.17 Aligned_cols=28 Identities=18% Similarity=-0.223 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchhhHHHHHHHHhhh
Q 038843 152 PDVNMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 152 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
....++.|.|..|+||||++..+.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3457889999999999999998888765
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.083 Score=50.06 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchhhHHHHHHHHhh
Q 038843 153 DVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 153 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
...+++|+|..|+|||||.+.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45799999999999999999998654
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.082 Score=50.08 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHhhh
Q 038843 155 NMLGIYGMGGIRKTTLPKEVARKAE 179 (283)
Q Consensus 155 ~vi~I~G~gGiGKTtLa~~v~~~~~ 179 (283)
.+++|+|..|+|||||++.+.--..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5799999999999999999987543
No 499
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.79 E-value=0.38 Score=42.92 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHHhc-CCCceEEEEEecCCchhhHHHHHHHHhhhhc-CCCCeEEEEEeCCcc-CHHHHHHHhCcEeEEeecchhH
Q 038843 142 LNDILGALK-NPDVNMLGIYGMGGIRKTTLPKEVARKAENE-KLFDQVIFAEVSQNQ-DIRKIQGEIGCKILLRARSEDT 218 (283)
Q Consensus 142 ~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~-~~~~i~~~i~s~iivTTR~~~v 218 (283)
--..++.+. =...+.++|+|.+|+|||+|++.+.+....+ ..+. ++++-+++.. .+.++.+.+.+-|++.|-++..
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~~EV~d~~~~~~G~VV~atadep~ 240 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERPEEVTDIRESTNAIVIAAPFDMPP 240 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCHHHHSSSSSSCCSEEEECCTTSCH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCcchHHHHHHHhCCeEEEECCCCCH
Confidence 346777776 3456789999999999999999998875432 1233 3556666553 2333333333345555555443
No 500
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.77 E-value=0.18 Score=42.40 Aligned_cols=36 Identities=14% Similarity=-0.015 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHhh
Q 038843 142 LNDILGALKNPDVNMLGIYGMGGIRKTTLPKEVARKA 178 (283)
Q Consensus 142 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 178 (283)
+++|++.+...- ..++++|.+|+|||||.+.+....
T Consensus 88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence 455666654322 578999999999999999988653
Done!