BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038845
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 38 GTLHRVGGKLGWTPSV--NFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDK 95
T+H+VG GWT V ++ +W+S F+V D L+FN++ +NVL+V++ ++SCN
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 96 GFIKNITKGGRDVFQLTEPRPYYFLSG-RGFCWGGLKAAIFVQ 137
+ T G D L P +YFL G G C G K I V
Sbjct: 62 SPAASYTSGA-DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 39 TLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFI 98
++ VGG GWT N W + F D L+FN++ +M+NV+ VN+ + +CN
Sbjct: 1 AVYVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58
Query: 99 KNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAI 134
K T GRD +L + + Y+ + G C G+K A+
Sbjct: 59 KVYTS-GRDQIKLPKGQSYFICNFPGHCQSGMKIAV 93
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 47 LGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGR 106
+GW+ +VN + +SF D L+F + K +NV+ VN Y SC+ + + G+
Sbjct: 5 IGWSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSS-GQ 60
Query: 107 DVFQLTEPRPYYFLSGRGFCWGGLKAAI 134
D +LT + Y+ S G C GG+K AI
Sbjct: 61 DRIKLTRGQNYFICSFPGHCGGGMKIAI 88
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 39 TLHRVGGKLGWT--PSVNF-TEWSSHESFYVNDWLIFNFDKNMYNVLEVN-KTSYESCND 94
T+H VG GW+ S NF ++W++ ++F V D L FNF N +NV E+ K S+++CN
Sbjct: 4 TVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 63
Query: 95 KGFIKNITKGGRDVFQLTEPRPYYFLSGRG-FCWGGLKAAIFV 136
++ + + +L E +YF+ G C G K +I V
Sbjct: 64 VNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 41 HRVGGKLGWTPSVN---FTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGF 97
+ VGG + W + + W++ ++F V D L F+F M++V V K ++++C +
Sbjct: 4 YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63
Query: 98 IKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFV 136
I ++T + T YY + C G K +I V
Sbjct: 64 ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 2 RSVLKVKPMEVMCSKIRGLITKXXXXXXXXGCVSGTGTLHRVGGKLGWTPSVNFTEWSSH 61
R+V+K +P EV + + G V G G H + ++P F + S+
Sbjct: 80 RAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTS 139
Query: 62 ESF 64
E F
Sbjct: 140 EMF 142
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 26.6 bits (57), Expect = 8.4, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 39 TLHRVGGKLGWTPSVNFTEWSSHE--SFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKG 96
TL + GK T SV F E++ E S Y+N W N+ N ES D
Sbjct: 973 TLIDINGK---TKSV-FFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIK 1028
Query: 97 FIKNITKGGRDVFQL 111
I+ + G +F+L
Sbjct: 1029 DIREVIANGEIIFKL 1043
>pdb|3C7E|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 43
Arabinoxylan Arabinofuranohydrolase From Bacillus
Subtilis.
pdb|3C7F|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 43
Arabinoxylan Arabinofuranohydrolase From Bacillus
Subtilis In Complex With Xylotriose.
pdb|3C7H|A Chain A, Crystal Structure Of Glycoside Hydrolase Family 43
Arabinoxylan Arabinofuranohydrolase From Bacillus
Subtilis In Complex With Axos-4- 0.5.
pdb|3C7O|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 43
Arabinoxylan Arabinofuranohydrolase From Bacillus
Subtilis In Complex With Cellotetraose
Length = 487
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 79 YNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQE 138
Y +NK + N G I+ + V Q++ PY + F W G I ++
Sbjct: 320 YRSPHINKLVH---NADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGR---ILTEK 373
Query: 139 TAPTPAPVQARNGSPSSTGSWI 160
+ PV ++ + G WI
Sbjct: 374 STAPGGPVNNQHVTSIQNGDWI 395
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 41 HRVGGKLGWTPSVNFTEWSS 60
HR GG L W P VN W+
Sbjct: 111 HRAGGDLEWNPFVNDYTWTD 130
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 47 LGWTPSVNFTEWSSHESFYVN--DWLIFNFDKN--MYNVLEVNKTS--YESCNDKGFIKN 100
LG+TP + T + +++Y N IF N + N+L + + S + C++ G I
Sbjct: 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369
Query: 101 ITKGGR 106
I G
Sbjct: 370 ILGNGE 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,551,982
Number of Sequences: 62578
Number of extensions: 235859
Number of successful extensions: 303
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 18
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)