Query 038848
Match_columns 446
No_of_seqs 175 out of 1232
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 8E-31 2.7E-35 219.2 2.8 80 2-83 1-80 (90)
2 1egw_A MADS box transcription 100.0 3.4E-30 1.1E-34 210.0 3.5 73 2-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 99.9 3.3E-29 1.1E-33 213.0 1.6 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 99.9 1.3E-28 4.4E-33 206.6 0.4 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 99.9 3.7E-28 1.3E-32 207.6 0.7 69 1-71 9-77 (103)
6 1j1d_C Troponin I, TNI; THIN f 67.1 41 0.0014 29.7 10.0 58 94-152 24-81 (133)
7 1deq_A Fibrinogen (alpha chain 59.2 44 0.0015 34.3 9.8 39 29-72 24-62 (390)
8 1ez3_A Syntaxin-1A; three heli 57.5 38 0.0013 28.1 7.8 68 88-158 9-76 (127)
9 1g6u_A Domain swapped dimer; d 57.4 49 0.0017 23.8 7.0 28 127-154 15-45 (48)
10 3efg_A Protein SLYX homolog; x 57.2 32 0.0011 27.5 6.9 17 90-106 12-28 (78)
11 3he5_A Synzip1; heterodimeric 53.1 50 0.0017 23.8 6.5 18 136-153 31-48 (49)
12 1j1e_C Troponin I, TNI; THIN f 49.4 76 0.0026 29.3 8.9 56 94-150 24-79 (180)
13 4gfh_A DNA topoisomerase 2; to 45.6 37 0.0013 39.5 7.5 44 25-74 957-1000(1177)
14 3twe_A Alpha4H; unknown functi 45.2 27 0.00093 22.4 3.6 20 90-109 6-25 (27)
15 1s94_A S-syntaxin; three helix 39.9 1.5E+02 0.0053 26.1 9.4 65 92-158 43-107 (180)
16 1fxk_A Prefoldin; archaeal pro 37.0 86 0.0029 25.2 6.6 12 62-73 1-12 (107)
17 3teq_A Stromal interaction mol 35.9 44 0.0015 28.3 4.6 62 94-161 30-93 (101)
18 1ytz_I Troponin I; muscle, THI 35.2 2.2E+02 0.0076 26.3 9.6 57 94-152 22-78 (182)
19 1ik9_A DNA repair protein XRCC 34.8 84 0.0029 29.4 7.0 50 89-156 150-199 (213)
20 2zqm_A Prefoldin beta subunit 34.5 1.1E+02 0.0038 24.8 7.0 12 62-73 6-17 (117)
21 3qx3_A DNA topoisomerase 2-bet 33.4 80 0.0028 35.3 7.5 26 45-74 598-623 (803)
22 2k48_A Nucleoprotein; viral pr 33.3 90 0.0031 26.6 6.1 32 124-155 67-101 (107)
23 1go4_E MAD1 (mitotic arrest de 33.1 2.2E+02 0.0074 23.9 8.5 25 90-114 17-41 (100)
24 1p9i_A Cortexillin I/GCN4 hybr 32.0 45 0.0015 22.0 3.2 25 131-155 1-25 (31)
25 3ghg_A Fibrinogen alpha chain; 31.7 93 0.0032 33.3 7.3 21 136-156 131-151 (562)
26 2dfs_A Myosin-5A; myosin-V, in 30.1 1.4E+02 0.0048 34.3 9.0 16 22-37 920-935 (1080)
27 3t98_B Nucleoporin NUP58/NUP45 29.5 2.4E+02 0.0081 23.2 8.8 64 87-155 7-70 (93)
28 1ytz_T Troponin T; muscle, THI 29.3 2.1E+02 0.007 24.2 7.8 28 125-152 38-65 (107)
29 1gmj_A ATPase inhibitor; coile 27.8 1.7E+02 0.0059 23.9 6.7 14 95-108 36-49 (84)
30 1m1j_A Fibrinogen alpha subuni 27.5 1.6E+02 0.0056 30.9 8.1 29 39-72 32-60 (491)
31 3iot_A Maltose-binding protein 27.2 46 0.0016 32.9 4.0 17 129-145 355-372 (449)
32 3ghg_A Fibrinogen alpha chain; 25.8 3.4E+02 0.012 29.1 10.3 17 128-144 172-188 (562)
33 1t3u_A Conserved hypothetical 25.3 61 0.0021 26.4 3.8 23 86-108 24-46 (104)
34 2kg5_A ARF-GAP, RHO-GAP domain 24.2 37 0.0013 28.1 2.3 37 123-165 53-89 (100)
35 4fi5_A Nucleoprotein; structur 24.1 1.3E+02 0.0044 25.9 5.6 64 90-160 27-93 (113)
36 3lss_A Seryl-tRNA synthetase; 23.4 2E+02 0.007 30.1 8.1 12 380-391 387-398 (484)
37 3cvf_A Homer-3, homer protein 23.2 1.6E+02 0.0055 23.7 5.7 16 90-105 25-40 (79)
38 2ke4_A CDC42-interacting prote 23.1 3.2E+02 0.011 22.5 9.8 77 70-155 7-85 (98)
39 3mq9_A Bone marrow stromal ant 22.9 3.2E+02 0.011 27.2 9.3 10 143-152 457-466 (471)
40 2ky6_A Mediator of RNA polymer 22.8 45 0.0015 30.5 2.6 21 36-56 116-136 (166)
41 2dfs_A Myosin-5A; myosin-V, in 22.8 2.5E+02 0.0087 32.2 9.4 22 133-154 1020-1041(1080)
42 2zvf_A Alanyl-tRNA synthetase; 22.4 1.5E+02 0.0052 25.6 6.1 15 128-142 81-95 (171)
43 3l4j_A DNA topoisomerase 2; to 22.0 1.4E+02 0.0047 33.3 6.7 43 26-74 538-580 (757)
44 2ic9_A Nucleocapsid protein; h 21.2 1.1E+02 0.0037 25.7 4.4 40 124-163 37-79 (96)
45 2w6b_A RHO guanine nucleotide 20.9 1.7E+02 0.0058 22.2 5.0 29 81-109 6-34 (56)
46 1m1j_C Fibrinogen gamma chain; 20.8 3.1E+02 0.011 28.1 8.7 24 50-73 11-34 (409)
47 3cve_A Homer protein homolog 1 20.7 1.7E+02 0.0056 23.3 5.2 17 90-106 19-35 (72)
48 2l5g_B Putative uncharacterize 20.3 1.2E+02 0.0041 21.9 3.8 23 90-112 14-36 (42)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.96 E-value=8e-31 Score=219.25 Aligned_cols=80 Identities=28% Similarity=0.518 Sum_probs=73.5
Q ss_pred CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCchhhhhh
Q 038848 2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSK 81 (446)
Q Consensus 2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe~er~K 81 (446)
||+||+|++|+|+++|+|||+|||+||||||.||||||||+||||||||+|++++| ++++|++||+||+..++..+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f--~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--ASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEE--ESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEe--CCCCHHHHHHHHHhcCcccccC
Confidence 89999999999999999999999999999999999999999999999999999996 3489999999999987765544
Q ss_pred hc
Q 038848 82 KM 83 (446)
Q Consensus 82 Km 83 (446)
..
T Consensus 79 ~~ 80 (90)
T 3p57_A 79 TN 80 (90)
T ss_dssp CH
T ss_pred Ch
Confidence 33
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.96 E-value=3.4e-30 Score=210.01 Aligned_cols=73 Identities=29% Similarity=0.558 Sum_probs=68.3
Q ss_pred CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCch
Q 038848 2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPE 76 (446)
Q Consensus 2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe 76 (446)
||+||+|++|+|+++|+|||+|||+||||||.||||||||+||||||||.|++++| ++++|++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~--~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--ASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEE--ESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeC--CCCCHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999997 45789999999988654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.95 E-value=3.3e-29 Score=213.01 Aligned_cols=71 Identities=25% Similarity=0.469 Sum_probs=68.0
Q ss_pred CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcC
Q 038848 1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNN 73 (446)
Q Consensus 1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~ 73 (446)
|||+||+|++|+|+.+|+|||+|||+||||||.||||||||+||||||||.|++|+| ++|+++.||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f--~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF--STPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEE--ECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCccee--cCCCHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999999998 56789999998865
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.94 E-value=1.3e-28 Score=206.65 Aligned_cols=70 Identities=24% Similarity=0.399 Sum_probs=66.4
Q ss_pred CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhc
Q 038848 1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFN 72 (446)
Q Consensus 1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk 72 (446)
|||+||+|++|+|+.+|+|||+|||+||||||.||||||||+||||||||.|++|+| ++++|+.||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f--~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEE--ECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEe--cCCCHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999998 5688999988654
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.93 E-value=3.7e-28 Score=207.60 Aligned_cols=69 Identities=25% Similarity=0.403 Sum_probs=65.6
Q ss_pred CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHh
Q 038848 1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARF 71 (446)
Q Consensus 1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRY 71 (446)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||.|++|+| ++++|+.||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f--~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEE--ECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeee--cCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998 567888888754
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=67.15 E-value=41 Score=29.69 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038848 94 VVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRM 152 (446)
Q Consensus 94 IeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRk 152 (446)
+.+..++|++.++...+..-..+..++ ---+|++|+.++|+++...|-+.+..+.+.+
T Consensus 24 l~kA~e~l~kE~e~k~eeKkkiLaER~-~pL~id~ls~~~L~e~~keLh~~I~~LEeEK 81 (133)
T 1j1d_C 24 LQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDEER 81 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666655544433333333344 2236899999999998877765555444443
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.19 E-value=44 Score=34.28 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=22.9
Q ss_pred hhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhc
Q 038848 29 LKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFN 72 (446)
Q Consensus 29 fKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk 72 (446)
+.++.+-|---|+..|+ +...-.-||+-=.++.+|++..
T Consensus 24 vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 24 VERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred hhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhh
Confidence 34555555545667776 3333234666666888888775
No 8
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=57.51 E-value=38 Score=28.10 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038848 88 TYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQI 158 (446)
Q Consensus 88 eyLkqrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~Leqi 158 (446)
+|+ .+++.++..|.+++....+ +..+..+.+....-+.-.-++|..+...+...-..|+.+++.|++.
T Consensus 9 ~F~-~~v~~I~~~i~~i~~~v~~--l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 9 EFF-EQVEEIRGFIDKIAENVEE--VKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3466666666666554442 2222222322222222223577888888888888888888888543
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=57.41 E-value=49 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHH---HHHHHHHHHHHH
Q 038848 127 DDFNINELQGLVWLME---ERKKDLRKRMDY 154 (446)
Q Consensus 127 ddLSleELqqLe~~LE---ekLK~VRkRke~ 154 (446)
++.+.+||..|+..|+ ++|..++.++..
T Consensus 15 egfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888876654 444444444443
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.17 E-value=32 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNSR 106 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkK 106 (446)
|.+++.+|+.++.-+.+
T Consensus 12 le~Ri~~LE~klAfqE~ 28 (78)
T 3efg_A 12 LEARLVELETRLSFQEQ 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777776655544
No 11
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.08 E-value=50 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038848 136 GLVWLMEERKKDLRKRMD 153 (446)
Q Consensus 136 qLe~~LEekLK~VRkRke 153 (446)
+|...||+.+..+|++++
T Consensus 31 dliaylekeianlrkkie 48 (49)
T 3he5_A 31 DLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456667777777777764
No 12
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=49.39 E-value=76 Score=29.34 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038848 94 VVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRK 150 (446)
Q Consensus 94 IeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRk 150 (446)
+.+..++|++.++...+..-..+..++ ---+|++|+.++|+++...|-+.+..+.+
T Consensus 24 l~kA~e~L~~E~e~k~eEKkkiLaER~-kPLnid~Lse~~L~e~ckELh~~I~~LEe 79 (180)
T 1j1e_C 24 LQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDE 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655444433333333344 22378899999999888777555444433
No 13
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=45.55 E-value=37 Score=39.48 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=31.2
Q ss_pred chhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCC
Q 038848 25 KVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNM 74 (446)
Q Consensus 25 R~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~l 74 (446)
.++|+|+- .|.+-.++- .+++|++.|+.+.| .++++||+.|..+
T Consensus 957 ~~~L~k~t-~L~~s~~~~-Nm~~~d~~g~i~k~----~~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 957 KIGFYERF-KLISPISLM-NMVAFDPHGKIKKY----NSVNEILSEFYYV 1000 (1177)
T ss_dssp HHCHHHHT-TCEEEECCS-CCEEECTTSCEEEC----SSHHHHHHHHHHH
T ss_pred HHhHHHhc-cCcceecce-EEEEEcCCCCccCc----CCHHHHHHHHHHH
Confidence 35666654 355544442 58899999998877 5799999999763
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.19 E-value=27 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNSRKNK 109 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkKKNr 109 (446)
|-.+++.+++.+.|++++.+
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888887754
No 15
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=39.86 E-value=1.5e+02 Score=26.07 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038848 92 ERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQI 158 (446)
Q Consensus 92 qrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~Leqi 158 (446)
++++.++..|+++.....+ +..+..+.+....-+.---++|..|...+...-+.|+.++..|++.
T Consensus 43 ~~v~~I~~~i~~i~~~v~~--l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDA--VKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777666655443 2223333332222122234788889899999999999999988643
No 16
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.00 E-value=86 Score=25.16 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=8.3
Q ss_pred chHHHHHHHhcC
Q 038848 62 PVVEQLLARFNN 73 (446)
Q Consensus 62 psVe~VIdRYk~ 73 (446)
|.++.++.+|..
T Consensus 1 ~~~Q~~i~~f~~ 12 (107)
T 1fxk_A 1 QNVQHQLAQFQQ 12 (107)
T ss_dssp CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 456777777765
No 17
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=35.87 E-value=44 Score=28.28 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 038848 94 VVKSQDQLKKNSRKNKVMEVSNLM--EQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPP 161 (446)
Q Consensus 94 IeKLqeQLkKLkKKNrEkEl~elm--~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~Leqi~~L 161 (446)
+...++..+|++||..- ++ .+..-+..+|+++ ..+.+....|++.-..+++|...+.+++.|
T Consensus 30 l~~A~e~~eKl~KKrsS-----~~gs~~~ahs~slD~vD-~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l 93 (101)
T 3teq_A 30 LMVAKEGAEKIKKKRNT-----LFGTFHVAHSSSLDDVD-HKILTAKQALSEATAALRERLHRWQQIEIL 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHCHHHHHTCGGGGGTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-----hheeeehhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666555331 11 2234456677666 556677788888888888988888777654
No 18
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=35.20 E-value=2.2e+02 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038848 94 VVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRM 152 (446)
Q Consensus 94 IeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRk 152 (446)
+.+..++|++.++...+..-..+..++ ---+|++ +.++|+++...|-+.+..+.+.+
T Consensus 22 l~kA~e~L~~E~e~k~eeKkkiLaER~-kPLnid~-se~~L~e~ckELh~~I~~LEeEK 78 (182)
T 1ytz_I 22 LQLAVTEIEKEAAAKEVEKQNYLAEHS-PPLSLPG-SMQELQELSKKLHAKIDSVDEER 78 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555444433333333444 2236788 99999999887776666665554
No 19
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.83 E-value=84 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848 89 YLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYE 156 (446)
Q Consensus 89 yLkqrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~Le 156 (446)
-|.+.+.++++|++++-+...+.|... +..|..+|.++...||.....|.
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L------------------~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDL------------------YKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666677777776655444443321 33677888888888888776553
No 20
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.48 E-value=1.1e+02 Score=24.84 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.2
Q ss_pred chHHHHHHHhcC
Q 038848 62 PVVEQLLARFNN 73 (446)
Q Consensus 62 psVe~VIdRYk~ 73 (446)
+.++.++.+|..
T Consensus 6 ~e~Q~~i~~~~~ 17 (117)
T 2zqm_A 6 PQVQAMLGQLES 17 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666654
No 21
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=33.45 E-value=80 Score=35.29 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=20.1
Q ss_pred EEEeCCCCCCCccCCCCchHHHHHHHhcCC
Q 038848 45 IIIYSPDESEPAMWPSRPVVEQLLARFNNM 74 (446)
Q Consensus 45 VIVFSP~GK~pefWPS~psVe~VIdRYk~l 74 (446)
+++|.+.++.+.| .++++||+.|..+
T Consensus 598 ~~l~d~~g~~pk~----~~l~eiL~~F~~~ 623 (803)
T 3qx3_A 598 MVLFDHMGCLKKY----ETVQDILKEFFDL 623 (803)
T ss_dssp EEEECTTSCEEEE----SCHHHHHHHHHHH
T ss_pred EEEECCCCCccee----CCHHHHHHHHHHH
Confidence 5667777777776 5799999999763
No 22
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.28 E-value=90 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=21.2
Q ss_pred CCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848 124 KKTDDFN---INELQGLVWLMEERKKDLRKRMDYY 155 (446)
Q Consensus 124 e~LddLS---leELqqLe~~LEekLK~VRkRke~L 155 (446)
.+.|+++ ++.-+.-...|+.++.+++..+..+
T Consensus 67 ~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 67 VDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 4555666777888888888777655
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.10 E-value=2.2e+02 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNSRKNKVMEVS 114 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkKKNrEkEl~ 114 (446)
|+++|+.|+.+-.+|++++...|+.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666655544
No 24
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=32.00 E-value=45 Score=22.03 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848 131 INELQGLVWLMEERKKDLRKRMDYY 155 (446)
Q Consensus 131 leELqqLe~~LEekLK~VRkRke~L 155 (446)
+++|+.|...||..-+.++.+.++|
T Consensus 1 mdqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888876
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.74 E-value=93 Score=33.28 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038848 136 GLVWLMEERKKDLRKRMDYYE 156 (446)
Q Consensus 136 qLe~~LEekLK~VRkRke~Le 156 (446)
..+..|+..|++++.+|..|+
T Consensus 131 snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333555555666666666553
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.12 E-value=1.4e+02 Score=34.26 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=0.0
Q ss_pred hhcchhhhhhhhhhhh
Q 038848 22 KKRKVGLLKKVSELTT 37 (446)
Q Consensus 22 sKRR~GLfKKAsELSt 37 (446)
.+.+..|-+|+.||..
T Consensus 920 ~~~~~~LE~kl~eLq~ 935 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQR 935 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555555443
No 27
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.53 E-value=2.4e+02 Score=23.20 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848 87 ETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYY 155 (446)
Q Consensus 87 EeyLkqrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~L 155 (446)
-+|+.+.+.+.+++|...+...++.|-.... . ..-..++..+|......+.+..-.+..|+..|
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s--~---s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~l 70 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLAT--Q---ANNSHITPQDLSMAMQKIYQTFVALAAQLQSI 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--H---HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887776654432111 0 11245777777776666665555555555544
No 28
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=29.30 E-value=2.1e+02 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038848 125 KTDDFNINELQGLVWLMEERKKDLRKRM 152 (446)
Q Consensus 125 ~LddLSleELqqLe~~LEekLK~VRkRk 152 (446)
+|++|+.++|+++...|-+.+..+.+.+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998877766655554443
No 29
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.82 E-value=1.7e+02 Score=23.88 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 038848 95 VKSQDQLKKNSRKN 108 (446)
Q Consensus 95 eKLqeQLkKLkKKN 108 (446)
++.++||++|+++.
T Consensus 36 qkekEqL~~LKkkl 49 (84)
T 1gmj_A 36 ARAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35567777877664
No 30
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.47 E-value=1.6e+02 Score=30.94 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=17.2
Q ss_pred cCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhc
Q 038848 39 CDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFN 72 (446)
Q Consensus 39 CGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk 72 (446)
.|+..| .++..-.-||+-=.++.+|++-.
T Consensus 32 ~D~pgC-----aDeDwGvkCPSGCrLqglL~kqe 60 (491)
T 1m1j_A 32 KNWPIC-----VDDDWGTKCPSGCRMQGIIDDTD 60 (491)
T ss_dssp TCCCBC-----CTTSTTTEECCSTTHHHHHHHHH
T ss_pred CCCCCC-----ccccccCCCCCccchhhHHHHhh
Confidence 456666 44444445676666777776653
No 31
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=27.20 E-value=46 Score=32.86 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=8.3
Q ss_pred CCHH-HHHHHHHHHHHHH
Q 038848 129 FNIN-ELQGLVWLMEERK 145 (446)
Q Consensus 129 LSle-ELqqLe~~LEekL 145 (446)
.+.+ -|.++...+++.+
T Consensus 355 ~~~eeal~~~~~~~~~i~ 372 (449)
T 3iot_A 355 QTVDAALAAAQTNAAAMA 372 (449)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 3443 3455555555443
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.77 E-value=3.4e+02 Score=29.06 Aligned_cols=17 Identities=6% Similarity=0.218 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHHHH
Q 038848 128 DFNINELQGLVWLMEER 144 (446)
Q Consensus 128 dLSleELqqLe~~LEek 144 (446)
.+++++..+++++|++.
T Consensus 172 ~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHH
Confidence 67788888887777664
No 33
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=25.32 E-value=61 Score=26.45 Aligned_cols=23 Identities=4% Similarity=0.097 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038848 86 QETYLKERVVKSQDQLKKNSRKN 108 (446)
Q Consensus 86 qEeyLkqrIeKLqeQLkKLkKKN 108 (446)
+|++|++-...++++++.+++..
T Consensus 24 ~ee~l~~aA~~vd~~~~~i~~~~ 46 (104)
T 1t3u_A 24 ERANLESAARYLDGKMREIRSSG 46 (104)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666666666677666666543
No 34
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=24.24 E-value=37 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=23.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 038848 123 GKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQES 165 (446)
Q Consensus 123 Ge~LddLSleELqqLe~~LEekLK~VRkRke~Leqi~~LQ~s~ 165 (446)
++.|-.|+.+||.+|. +..+-.|+..|..+..+....
T Consensus 53 ~~~L~~Lt~eDLkeLG------It~~GhRkkIL~aI~~Lr~~~ 89 (100)
T 2kg5_A 53 AGAARGLGHEELKQLG------ISATGHRKRILRLLQTGTEEG 89 (100)
T ss_dssp HHHHTTCCHHHHHHHT------CCCHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHhcCHHHHHHCC------CCChhHHHHHHHHHHHHHhcc
Confidence 3446678888888763 333445666666666666554
No 35
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.07 E-value=1.3e+02 Score=25.89 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 038848 90 LKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFN---INELQGLVWLMEERKKDLRKRMDYYEQINP 160 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLS---leELqqLe~~LEekLK~VRkRke~Leqi~~ 160 (446)
|+.++...+.||.--+.|.++.+. ++ +.+.|+++ ++.-+.-...|+.+|.+++..+...-...+
T Consensus 27 Lq~Ei~~~E~QL~~ArQKLkdA~~-----~~--e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k 93 (113)
T 4fi5_A 27 LQREINAHEGQLVIARQKVRDAEK-----QY--EKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGK 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----Hh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555554444433221 11 23445444 455566777788888888888776654333
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.44 E-value=2e+02 Score=30.10 Aligned_cols=12 Identities=17% Similarity=-0.058 Sum_probs=5.6
Q ss_pred ccccccCCCCCC
Q 038848 380 NINIGSSSSLGG 391 (446)
Q Consensus 380 ~~~~~~~~~~~~ 391 (446)
-..|.|.|..|.
T Consensus 387 ~~EIsS~Snc~d 398 (484)
T 3lss_A 387 FRELVSCSNCTD 398 (484)
T ss_dssp EEEEEEEEECTT
T ss_pred eeEEEEecCccc
Confidence 344555554443
No 37
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.22 E-value=1.6e+02 Score=23.70 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNS 105 (446)
Q Consensus 90 LkqrIeKLqeQLkKLk 105 (446)
|+.++..++.+++..+
T Consensus 25 Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 25 LEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666554
No 38
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.05 E-value=3.2e+02 Score=22.55 Aligned_cols=77 Identities=14% Similarity=0.341 Sum_probs=38.9
Q ss_pred HhcCCchhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 038848 70 RFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKV-MEVSNLMEQF-HLGKKTDDFNINELQGLVWLMEERKKD 147 (446)
Q Consensus 70 RYk~lpe~er~KKm~dqEeyLkqrIeKLqeQLkKLkKKNrE-kEl~elm~q~-~~Ge~LddLSleELqqLe~~LEekLK~ 147 (446)
-|..+|...|.++ |+++|.+++.+|+|..+...- ..|..+..+. -.| +...+ ..+|.+....|+..-.+
T Consensus 7 d~s~LPpeqRkkk-------L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G-D~~s~-~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 7 DFSHLPPEQQRKR-------LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG-DPASL-EPQIAETLSNIERLKLE 77 (98)
T ss_dssp CSSSSCHHHHHHH-------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC-CGGGS-HHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHH-HHHHHHHHHHHHHHHHH
Confidence 3566776655443 456677777777666544222 1122221111 223 22233 56777777777666555
Q ss_pred HHHHHHHH
Q 038848 148 LRKRMDYY 155 (446)
Q Consensus 148 VRkRke~L 155 (446)
+.+=...|
T Consensus 78 l~K~q~~L 85 (98)
T 2ke4_A 78 VQKYEAWL 85 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.87 E-value=3.2e+02 Score=27.24 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 038848 143 ERKKDLRKRM 152 (446)
Q Consensus 143 ekLK~VRkRk 152 (446)
..|++.++.+
T Consensus 457 ~~~~~~~~~~ 466 (471)
T 3mq9_A 457 HKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 40
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=22.81 E-value=45 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.4
Q ss_pred hhccCCcEEEEEeCCCCCCCc
Q 038848 36 TTLCDVNAFIIIYSPDESEPA 56 (446)
Q Consensus 36 StLCGaeVAVIVFSP~GK~pe 56 (446)
+.-|+++|-+++|||+.+.|.
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 345999999999999988653
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.81 E-value=2.5e+02 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038848 133 ELQGLVWLMEERKKDLRKRMDY 154 (446)
Q Consensus 133 ELqqLe~~LEekLK~VRkRke~ 154 (446)
+|++....|++....+++.++.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433333
No 42
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.38 E-value=1.5e+02 Score=25.59 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHH
Q 038848 128 DFNINELQGLVWLME 142 (446)
Q Consensus 128 dLSleELqqLe~~LE 142 (446)
+.+.++|+.+...|.
T Consensus 81 ~~d~~~lr~~~~~l~ 95 (171)
T 2zvf_A 81 DADMQALQKLAERLA 95 (171)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 677777777765543
No 43
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=22.00 E-value=1.4e+02 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=27.4
Q ss_pred hhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCC
Q 038848 26 VGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNM 74 (446)
Q Consensus 26 ~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~l 74 (446)
++|+|+ ..|.+-.++. .++++.+.|+.+.| .++++||+.|..+
T Consensus 538 ~~L~k~-t~Lq~sf~~~-nm~l~d~~g~~~~~----~~l~eiL~~f~~~ 580 (757)
T 3l4j_A 538 IGFYER-FKLISPISLM-NMVAFDPHGKIKKY----NSVNEILSEFYYV 580 (757)
T ss_dssp HCHHHH-TTCEEEEECS-CCEEECTTSCEEEC----SSHHHHHHHHHHH
T ss_pred HHHHHh-cCCeEEeccc-eEEEEcCCCCcccc----CCHHHHHHHHHHH
Confidence 466654 3344444432 34566888886665 5799999999763
No 44
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.21 E-value=1.1e+02 Score=25.71 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=25.1
Q ss_pred CCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 038848 124 KKTDDFN---INELQGLVWLMEERKKDLRKRMDYYEQINPPPQ 163 (446)
Q Consensus 124 e~LddLS---leELqqLe~~LEekLK~VRkRke~Leqi~~LQ~ 163 (446)
.+.|+++ ++.-+.-...|+.+|.+++..+..+-....+..
T Consensus 37 ~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k~~~ 79 (96)
T 2ic9_A 37 LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQKLAS 79 (96)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3444444 455566778888889888888887644443333
No 45
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.93 E-value=1.7e+02 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=20.0
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 038848 81 KKMMNQETYLKERVVKSQDQLKKNSRKNK 109 (446)
Q Consensus 81 KKm~dqEeyLkqrIeKLqeQLkKLkKKNr 109 (446)
|..+|.-.-|+.+++.|+.+.+++++..+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666678888888888777766543
No 46
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.76 E-value=3.1e+02 Score=28.09 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.2
Q ss_pred CCCCCCccCCCCchHHHHHHHhcC
Q 038848 50 PDESEPAMWPSRPVVEQLLARFNN 73 (446)
Q Consensus 50 P~GK~pefWPS~psVe~VIdRYk~ 73 (446)
++...-.++|..=.+.+.|.+|+.
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~ 34 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRL 34 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHH
T ss_pred CCcccCCcCCCcccHHHHHHHHHh
Confidence 344555678877789999999976
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.66 E-value=1.7e+02 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.392 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNSR 106 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkK 106 (446)
|+.++..++.+++..+.
T Consensus 19 Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666667766666553
No 48
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.27 E-value=1.2e+02 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038848 90 LKERVVKSQDQLKKNSRKNKVME 112 (446)
Q Consensus 90 LkqrIeKLqeQLkKLkKKNrEkE 112 (446)
...+|+|.++++.+++++.++.|
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!