BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038850
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 3 QEAEEQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAA 62
QE E+ N + + P+ R+KKI+K DED+ +++EA + +++ ELF+ L +S A
Sbjct: 66 QEIEQVN-DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124
Query: 63 IEKKRKTIKLGDMRVA 78
E KR+T++ D+ A
Sbjct: 125 EENKRRTLQKNDIAAA 140
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 7 EQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKK 66
E+ T+ P+ R+KKI+K DED+ +++EA + +R+ E+F+ L +S E K
Sbjct: 71 EKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENK 130
Query: 67 RKTIKLGDMRVA 78
R+T++ D+ A
Sbjct: 131 RRTLQKNDIAAA 142
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 7 EQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKK 66
E+ T+ P+ R+KKI+K DED+ +++EA + +R+ E+F+ L +S E K
Sbjct: 61 EKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENK 120
Query: 67 RKTIKLGDMRVA 78
R+T++ D+ A
Sbjct: 121 RRTLQKNDIAAA 132
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1
SV=2
Length = 117
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ RVK ++K D D+ EA+FI++R+ ELF+ +A+ + A + KRKT++ D+
Sbjct: 41 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 99
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ RVK ++K D D+ EA+FI++R+ ELF+ +A+ + A + KRKT++ D+
Sbjct: 40 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 98
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ RVK ++K D D+ EA+FI++R+ ELF+ +A+ + A + KRKT++ D+
Sbjct: 42 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 100
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 7 EQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKK 66
EQ + + P+ R+KKI+K DED+ +++EA + +++ ELF+ L +S A E K
Sbjct: 56 EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 115
Query: 67 RKTIKLGDMRVA 78
R+T++ D+ A
Sbjct: 116 RRTLQKNDIAAA 127
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis
thaliana GN=NFYC5 PE=2 SV=1
Length = 186
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
EFP+ R+K+I+K D D++ + +EA ++S++ E+F+ L +S A E R TI+ D+
Sbjct: 36 EFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDV 95
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis
thaliana GN=NFYC8 PE=2 SV=1
Length = 187
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 7 EQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKK 66
E N + + P+ R+KKI+K D D+ + SEA ++S++ E+F+ L +S A E K
Sbjct: 27 EGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESK 86
Query: 67 RKTIKLGDMRVA 78
R T++ ++ A
Sbjct: 87 RVTLQKSNVDAA 98
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
+ P+ R+KKI+K D D++ V++EA I +++ E+F+ L +S A E KR T++ D+
Sbjct: 54 QLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDI 113
Query: 76 RVA 78
A
Sbjct: 114 SNA 116
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 10 TETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKT 69
T+ FP+ R+KKI+K + ++N VT+EA ++S++ E+ + L +S +E R+T
Sbjct: 57 TDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQT 116
Query: 70 IKLGD 74
+K D
Sbjct: 117 LKRSD 121
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+KLDED+ +++EA + +++ ++F+ L ++ + KR+T++ D+
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 101
Query: 76 RVA 78
+A
Sbjct: 102 AMA 104
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 7 EQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKK 66
E T+ P+ R+KKI+K DED+ +++EA I +++ E+F+ L ++ E K
Sbjct: 67 EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126
Query: 67 RKTIKLGDMRVA 78
R+T++ D+ A
Sbjct: 127 RRTLQKNDIAAA 138
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+KLDED+ +++EA + +++ ++F+ L ++ + KR+T++ D+
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 101
Query: 76 RVA 78
+A
Sbjct: 102 AMA 104
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+KLDED+ +++EA + +++ ++F+ L ++ + KR+T++ D+
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 101
Query: 76 RVA 78
+A
Sbjct: 102 AMA 104
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+KLDED+ +++EA + +++ ++F+ L ++ + KR+T++ D+
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 101
Query: 76 RVA 78
+A
Sbjct: 102 AMA 104
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3
SV=1
Length = 87
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ RVK+IIK DED++ ++ + ++S +TELF+ LA ++ + A +KRK I+ D+
Sbjct: 10 LPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDV 68
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTI 70
FP +VKKI++ DEDI KV+ I RS E F+ L +KS E A + K I
Sbjct: 52 HFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRI 106
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+K D+D+NK++SEA + +++ E+ + + +S KR+T++ D+
Sbjct: 270 ELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDI 329
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTI 70
FP R+KKI++ DE+I KV + I+SR+ ELFL L +K+ + + KT+
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM 65
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTI 70
FP R+KKI++ DE+I KV + I+SR+ ELFL L +K+ + + KT+
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM 65
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2
SV=1
Length = 205
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTI 70
FP R+KKI++ DE+I KV + I+SR+ ELFL L +K+ + + KT+
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM 65
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTI 70
FP R+KKI++ DE+I KV + I+SR+ ELFL L +K+ + + KT+
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM 65
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
E P+ R+KKI+KLDED+ +++EA + +++ ++F+ L ++ + KR+T++ D+
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 101
Query: 76 RVA 78
+A
Sbjct: 102 AMA 104
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
+FP+ R+KKI++ DE++ K+ S ++S+ ELF+ L K+ + KK K I + +
Sbjct: 8 KFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHL 67
Query: 76 R 76
+
Sbjct: 68 K 68
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P R++K++K DED+ +++EA I +++ E+F+ L ++ A KR+T++ D+
Sbjct: 160 LPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADI 218
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSA 59
FPV R+KKI++ D+D+ KV I+S++ ELF++ + ++S
Sbjct: 24 FPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESC 66
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMR 76
P+ ++KKI K+D D + A++ +TELF+++ E+S A KRK ++ D
Sbjct: 92 LPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKDFS 151
Query: 77 VA 78
A
Sbjct: 152 NA 153
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus
GN=Chrac1 PE=1 SV=1
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ R++ I+K +++ + EAL + +++TELF+++LA S K +K + D+
Sbjct: 19 LPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTYSDL 77
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 4 EAEEQNTETTRPEFPVGRVKKIIKLDEDI-NK-VTSEALFIVSRSTELFLRFLAEKSAEA 61
E ++Q +T P+ R+KK++K D+D+ NK +++EA F+ ++ +E+F+ L ++
Sbjct: 98 EHDDQAVKTL--HLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLH 155
Query: 62 AIEKKRKTIKLGDM 75
A + +R+T++ D+
Sbjct: 156 AKKNQRRTLQRSDI 169
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMR 76
FPV R+KK+++ D+DI KV V+++ ELF+ L E++ A + K + ++
Sbjct: 12 FPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRVSPSHLK 71
Query: 77 VA 78
A
Sbjct: 72 QA 73
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens
GN=CHRAC1 PE=1 SV=1
Length = 131
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 17 FPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ R++ I+K +++ + EAL + +++TELF++ LA S K++K + D+
Sbjct: 19 LPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDL 77
>sp|Q54F38|H3V1_DICDI Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1
Length = 619
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 15 PEFPVGR-VKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLG 73
P P+ R V++I+ L +D ++T AL + +TE +L L E S A RKTI+
Sbjct: 547 PRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSV 606
Query: 74 DM 75
DM
Sbjct: 607 DM 608
>sp|Q6CLM5|DPB3_KLULA DNA polymerase epsilon subunit C OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB3 PE=3 SV=1
Length = 166
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAE-AAIEKKRKTIKLG 73
P P+ + KKI + D + + A + +TELF++ LAE++ A I K+ KT++L
Sbjct: 9 PRIPISKCKKIARTDPEYILTSQAAFAATAFTTELFIQMLAEETCSLAQIHKQTKTLRLN 68
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75
P+ RV+KI+K D ++ K++ + + S++ E F+ + ++ R+TI+ D+
Sbjct: 67 HLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDI 126
>sp|B5E4P5|ADDA_STRP4 ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=addA PE=3 SV=1
Length = 1216
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|B1IBR6|ADDA_STRPI ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=addA PE=3 SV=1
Length = 1216
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|B8ZQ32|ADDA_STRPJ ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=addA
PE=3 SV=1
Length = 1216
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|Q8DPR6|ADDA_STRR6 ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=addA PE=3 SV=1
Length = 1216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|Q97QP9|ADDA_STRPN ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=addA PE=3 SV=1
Length = 1216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|Q04KF8|ADDA_STRP2 ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=addA
PE=3 SV=1
Length = 1216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|B2IPX3|ADDA_STRPS ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain CGSP14) GN=addA PE=3 SV=1
Length = 1216
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 25 IIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKL 72
I+ +D+D NK S + I+SR L ++++A+ A + KTIKL
Sbjct: 810 ILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKL 857
>sp|B0BAG0|CLPX_CHLTB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=clpX
PE=3 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 4 EAEEQNTETTRPEFPVGRVKKIIK-----LDEDINKVTSEALFIVSRSTELF----LRFL 54
E E+ T PEF +GR I+ LDE + +T A IV + TELF ++ +
Sbjct: 290 ETEDLITFGMIPEF-IGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLI 348
Query: 55 AEKSAEAAIEKKRKTIKLG 73
EK A AI +K K K G
Sbjct: 349 FEKEALYAIAQKAKQAKTG 367
>sp|B0B8T1|CLPX_CHLT2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=clpX PE=3 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 4 EAEEQNTETTRPEFPVGRVKKIIK-----LDEDINKVTSEALFIVSRSTELF----LRFL 54
E E+ T PEF +GR I+ LDE + +T A IV + TELF ++ +
Sbjct: 290 ETEDLITFGMIPEF-IGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLI 348
Query: 55 AEKSAEAAIEKKRKTIKLG 73
EK A AI +K K K G
Sbjct: 349 FEKEALYAIAQKAKQAKTG 367
>sp|P27344|DPB3_YEAST DNA polymerase epsilon subunit C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB3 PE=1 SV=2
Length = 201
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKS 58
P FP+ +VKKI K D + ++ A+ + + ELF++ L E+S
Sbjct: 10 PVFPISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEES 53
>sp|Q9PLM1|CLPX_CHLMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=clpX PE=3 SV=1
Length = 419
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 15 PEFPVGRVKKIIK-----LDEDINKVTSEALFIVSRSTELF----LRFLAEKSAEAAIEK 65
PEF +GR I+ LDE + +T A IV + TELF ++ + EK A AI +
Sbjct: 301 PEF-IGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFAEENVKLIFEKEALYAIAQ 359
Query: 66 KRKTIKLG 73
K K K G
Sbjct: 360 KAKQAKTG 367
>sp|Q3KKY9|CLPX_CHLTA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=clpX PE=3 SV=1
Length = 419
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 15 PEFPVGRVKKIIK-----LDEDINKVTSEALFIVSRSTELF----LRFLAEKSAEAAIEK 65
PEF +GR I+ LDE + +T A IV + TELF ++ + EK A AI +
Sbjct: 301 PEF-IGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIAQ 359
Query: 66 KRKTIKLG 73
K K K G
Sbjct: 360 KAKQAKTG 367
>sp|O84711|CLPX_CHLTR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=clpX PE=3 SV=1
Length = 419
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 15 PEFPVGRVKKIIK-----LDEDINKVTSEALFIVSRSTELF----LRFLAEKSAEAAIEK 65
PEF +GR ++ LDE + +T A IV + TELF ++ + EK A AI +
Sbjct: 301 PEF-IGRFNCVVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIAQ 359
Query: 66 KRKTIKLG 73
K K K G
Sbjct: 360 KAKQAKTG 367
>sp|P0DJH6|CENPW_CHICK Centromere protein W OS=Gallus gallus GN=CENPW PE=1 SV=1
Length = 76
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 14 RPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIK 71
R P G ++KIIK + ++ + +V S LFL LAE++ A E K K IK
Sbjct: 2 RRTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIK 59
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 17 FPVGRVKKIIK--LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGD 74
P+ V +I+K L E+ K++ EA V F+ F+ +++E ++KRKTI D
Sbjct: 12 LPIANVARIMKSALPENA-KISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 75 MRVA 78
+ +A
Sbjct: 71 VLLA 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,754,841
Number of Sequences: 539616
Number of extensions: 631526
Number of successful extensions: 2071
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 72
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)