Query 038850
Match_columns 78
No_of_seqs 111 out of 713
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 99.9 4.4E-26 1.5E-30 146.0 7.7 74 5-78 30-103 (119)
2 1n1j_B NF-YC; histone-like PAI 99.9 1.9E-25 6.4E-30 138.5 6.6 70 9-78 12-81 (97)
3 1jfi_A Transcription regulator 99.9 7.3E-25 2.5E-29 136.2 7.3 69 10-78 5-73 (98)
4 2byk_A Chrac-16; nucleosome sl 99.9 2.5E-25 8.7E-30 146.1 4.4 69 10-78 13-82 (140)
5 2byk_B Chrac-14; nucleosome sl 99.8 8.7E-22 3E-26 127.5 6.0 66 13-78 6-72 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 3.5E-21 1.2E-25 118.1 7.0 67 12-78 4-71 (93)
7 3b0c_W CENP-W, centromere prot 99.8 1.1E-19 3.7E-24 108.1 6.1 65 13-78 1-66 (76)
8 1b67_A Protein (histone HMFA); 99.8 1.4E-18 4.8E-23 100.9 6.5 62 16-78 2-63 (68)
9 1jfi_B DR1 protein, transcript 99.7 1.4E-16 4.7E-21 108.1 6.6 68 10-78 9-77 (179)
10 1ku5_A HPHA, archaeal histon; 99.5 3.7E-14 1.3E-18 82.7 6.5 64 14-78 4-67 (70)
11 1f1e_A Histone fold protein; a 99.5 7.1E-14 2.4E-18 92.9 7.3 69 9-78 75-143 (154)
12 2nqb_C Histone H2A; nucleosome 99.5 1.1E-13 3.8E-18 88.9 6.8 66 13-78 20-85 (123)
13 1id3_C Histone H2A.1; nucleoso 99.5 8.8E-14 3E-18 90.3 6.3 67 12-78 21-87 (131)
14 1tzy_A Histone H2A-IV; histone 99.5 1.4E-13 4.7E-18 89.1 6.8 66 13-78 22-87 (129)
15 2f8n_G Core histone macro-H2A. 99.5 1.2E-13 4E-18 88.5 6.1 66 13-78 19-84 (120)
16 1f1e_A Histone fold protein; a 99.4 2.1E-13 7.3E-18 90.5 6.5 63 15-78 3-66 (154)
17 1f66_C Histone H2A.Z; nucleoso 99.4 3.2E-13 1.1E-17 87.3 6.5 66 13-78 24-90 (128)
18 2f8n_K Histone H2A type 1; nuc 99.4 3.7E-13 1.3E-17 89.0 6.6 66 13-78 41-106 (149)
19 1tzy_D Histone H4-VI; histone- 99.3 3.8E-12 1.3E-16 79.2 6.1 63 15-78 28-90 (103)
20 2yfw_B Histone H4, H4; cell cy 99.3 3.9E-12 1.3E-16 79.2 6.1 63 15-78 28-90 (103)
21 2hue_C Histone H4; mini beta s 99.3 8.5E-12 2.9E-16 75.2 6.1 63 15-78 9-71 (84)
22 2jss_A Chimera of histone H2B. 99.3 7.8E-12 2.7E-16 85.1 5.9 66 13-78 102-168 (192)
23 3b0c_T CENP-T, centromere prot 99.3 5.8E-12 2E-16 79.6 4.8 66 12-78 3-68 (111)
24 1id3_B Histone H4; nucleosome 99.2 1.5E-11 5.2E-16 76.6 6.1 63 15-78 27-89 (102)
25 1taf_B TFIID TBP associated fa 99.1 3.7E-10 1.3E-14 66.3 7.3 65 13-78 3-67 (70)
26 2hue_B Histone H3; mini beta s 98.8 1.1E-08 3.9E-13 60.9 5.1 61 17-78 4-69 (77)
27 2yfv_A Histone H3-like centrom 98.5 1.3E-07 4.4E-12 58.8 4.8 64 15-78 26-96 (100)
28 3nqj_A Histone H3-like centrom 98.5 2.2E-07 7.5E-12 55.9 5.7 62 17-78 4-71 (82)
29 1taf_A TFIID TBP associated fa 98.3 1.5E-06 5.3E-11 50.5 6.2 57 21-78 6-62 (68)
30 1tzy_C Histone H3; histone-fol 98.3 1.6E-06 5.3E-11 56.5 6.2 63 15-78 61-128 (136)
31 3nqu_A Histone H3-like centrom 98.2 1.9E-06 6.5E-11 56.3 5.4 46 33-78 84-129 (140)
32 3r45_A Histone H3-like centrom 98.2 1.7E-06 5.8E-11 57.4 5.1 65 14-78 75-145 (156)
33 2ly8_A Budding yeast chaperone 98.2 1.9E-06 6.6E-11 55.1 4.7 48 30-77 60-107 (121)
34 1bh9_B TAFII28; histone fold, 98.1 2.4E-06 8.2E-11 51.9 4.0 65 13-78 13-78 (89)
35 3b0b_B CENP-S, centromere prot 98.1 3.4E-06 1.1E-10 52.9 4.1 56 22-77 25-82 (107)
36 3v9r_A MHF1, uncharacterized p 98.1 9.6E-06 3.3E-10 49.4 6.0 45 33-77 31-75 (90)
37 4dra_A Centromere protein S; D 98.1 4E-06 1.4E-10 53.1 4.3 55 22-77 33-90 (113)
38 3ksy_A SOS-1, SON of sevenless 98.0 1.2E-05 4.1E-10 65.1 6.4 67 10-77 98-164 (1049)
39 2l5a_A Histone H3-like centrom 97.9 4.9E-06 1.7E-10 58.3 3.1 48 30-77 174-221 (235)
40 4dra_E Centromere protein X; D 97.9 8.4E-05 2.9E-09 44.7 7.7 66 12-77 8-75 (84)
41 3b0b_C CENP-X, centromere prot 97.9 7.4E-05 2.5E-09 44.6 7.3 65 13-77 5-71 (81)
42 2nqb_D Histone H2B; nucleosome 97.9 3.2E-05 1.1E-09 49.5 5.6 58 20-78 37-95 (123)
43 3vh5_A CENP-S; histone fold, c 97.9 1.5E-05 5.2E-10 52.0 4.1 55 22-77 25-82 (140)
44 1tzy_B Histone H2B; histone-fo 97.8 3.7E-05 1.3E-09 49.4 5.7 57 21-78 41-98 (126)
45 2l5a_A Histone H3-like centrom 97.8 4.1E-05 1.4E-09 53.6 6.2 65 14-78 12-80 (235)
46 2jss_A Chimera of histone H2B. 97.6 0.00016 5.3E-09 48.9 6.0 58 20-78 7-65 (192)
47 1h3o_B Transcription initiatio 96.9 0.0043 1.5E-07 36.5 6.5 61 15-76 4-65 (76)
48 3v9r_B MHF2, uncharacterized p 95.7 0.037 1.3E-06 33.4 5.8 60 17-76 2-70 (88)
49 2ly8_A Budding yeast chaperone 95.2 0.054 1.9E-06 34.3 5.6 58 15-72 3-67 (121)
50 1wwi_A Hypothetical protein TT 89.4 1.2 4E-05 29.1 5.9 59 16-75 2-60 (148)
51 1h3o_A Transcription initiatio 86.6 1.5 5E-05 25.5 4.5 43 20-63 10-52 (75)
52 1r4v_A Hypothetical protein AQ 83.2 1.7 5.8E-05 28.9 4.2 59 16-75 26-84 (171)
53 3kw6_A 26S protease regulatory 81.1 0.96 3.3E-05 25.2 2.1 39 40-78 27-69 (78)
54 2dzn_B 26S protease regulatory 75.1 1.8 6.3E-05 24.3 2.1 28 51-78 37-64 (82)
55 2krk_A 26S protease regulatory 73.2 2.2 7.4E-05 24.6 2.1 28 51-78 50-77 (86)
56 3vlf_B 26S protease regulatory 73.1 2 7E-05 24.6 2.0 38 41-78 26-67 (88)
57 3uk6_A RUVB-like 2; hexameric 71.1 13 0.00043 25.3 6.0 61 18-78 260-326 (368)
58 3aji_B S6C, proteasome (prosom 70.6 1.9 6.5E-05 24.1 1.5 28 51-78 40-67 (83)
59 1bh9_A TAFII18; histone fold, 70.5 9.3 0.00032 19.8 5.4 40 21-60 5-44 (45)
60 3k1j_A LON protease, ATP-depen 68.2 13 0.00044 27.9 6.0 47 32-78 312-371 (604)
61 1g8p_A Magnesium-chelatase 38 62.8 22 0.00075 23.8 5.9 45 34-78 267-318 (350)
62 2v1u_A Cell division control p 62.7 15 0.00052 24.7 5.0 60 19-78 203-272 (387)
63 3h4m_A Proteasome-activating n 53.0 9 0.00031 25.2 2.5 29 50-78 226-254 (285)
64 2qby_A CDC6 homolog 1, cell di 51.3 51 0.0018 21.9 6.3 59 19-77 199-267 (386)
65 1ixz_A ATP-dependent metallopr 49.7 11 0.00038 24.5 2.5 39 40-78 210-252 (254)
66 1lv7_A FTSH; alpha/beta domain 48.3 12 0.00041 24.3 2.5 28 51-78 221-248 (257)
67 2c9o_A RUVB-like 1; hexameric 47.0 32 0.0011 24.7 4.8 61 18-78 367-433 (456)
68 4b4t_I 26S protease regulatory 46.2 12 0.00042 27.9 2.5 28 51-78 392-419 (437)
69 1iy2_A ATP-dependent metallopr 45.5 14 0.00047 24.5 2.5 39 40-78 234-276 (278)
70 4b4t_J 26S protease regulatory 43.8 14 0.00047 27.2 2.4 28 51-78 358-385 (405)
71 4b4t_K 26S protease regulatory 43.4 14 0.00049 27.1 2.5 39 40-78 368-410 (428)
72 4b4t_L 26S protease subunit RP 43.1 15 0.0005 27.2 2.5 28 51-78 391-418 (437)
73 4b4t_M 26S protease regulatory 41.5 13 0.00045 27.4 2.0 28 51-78 391-418 (434)
74 1fnn_A CDC6P, cell division co 39.7 55 0.0019 22.0 4.9 44 34-77 214-269 (389)
75 4b4t_H 26S protease regulatory 37.5 17 0.00057 27.4 2.0 38 41-78 405-446 (467)
76 2e0c_A 409AA long hypothetical 35.1 21 0.00072 26.3 2.3 23 51-73 199-221 (409)
77 2iv0_A Isocitrate dehydrogenas 34.3 22 0.00077 26.2 2.3 23 51-73 199-221 (412)
78 1x0l_A Homoisocitrate dehydrog 34.2 22 0.00074 25.6 2.2 23 51-73 146-168 (333)
79 3flk_A Tartrate dehydrogenase/ 33.9 23 0.00077 25.8 2.2 22 51-72 168-189 (364)
80 3dms_A Isocitrate dehydrogenas 32.8 24 0.00083 26.2 2.3 22 51-72 216-237 (427)
81 3blx_B Isocitrate dehydrogenas 32.2 26 0.00088 25.4 2.3 22 51-72 165-186 (354)
82 3blx_A Isocitrate dehydrogenas 32.1 26 0.00088 25.4 2.3 22 51-72 159-180 (349)
83 2qz4_A Paraplegin; AAA+, SPG7, 31.9 11 0.00036 24.3 0.2 29 50-78 217-245 (262)
84 2d4v_A Isocitrate dehydrogenas 31.1 27 0.00092 26.0 2.3 23 51-73 206-228 (429)
85 1ebo_A Ebola virus envelope pr 30.2 86 0.0029 19.4 4.1 39 18-56 21-59 (131)
86 3fes_A ATP-dependent CLP endop 29.7 38 0.0013 20.4 2.5 26 52-77 87-112 (145)
87 1hqs_A Isocitrate dehydrogenas 28.7 26 0.00089 26.0 1.8 23 51-73 197-219 (423)
88 2r62_A Cell division protease 27.3 27 0.00092 22.6 1.6 28 51-78 222-249 (268)
89 1tyo_A Isocitrate dehydrogenas 27.3 28 0.00096 25.9 1.8 23 51-73 209-231 (435)
90 3fh2_A Probable ATP-dependent 26.2 48 0.0016 19.9 2.5 24 53-76 88-111 (146)
91 1w5s_A Origin recognition comp 25.3 91 0.0031 21.1 4.1 59 17-76 215-287 (412)
92 2d1c_A Isocitrate dehydrogenas 23.5 44 0.0015 25.4 2.3 22 51-72 167-188 (496)
93 1f8v_D Mature capsid protein g 23.4 30 0.001 17.6 0.9 10 20-29 5-14 (40)
94 1k6k_A ATP-dependent CLP prote 23.2 53 0.0018 19.4 2.3 25 52-76 85-109 (143)
95 2qby_B CDC6 homolog 3, cell di 22.2 1.8E+02 0.0062 19.4 5.7 57 19-77 199-265 (384)
96 3zri_A CLPB protein, CLPV; cha 22.0 59 0.002 20.6 2.4 26 52-77 104-130 (171)
97 1khy_A CLPB protein; alpha hel 21.5 54 0.0018 19.4 2.0 26 51-76 87-112 (148)
98 1nov_D Nodamura virus coat pro 21.5 34 0.0012 17.7 0.9 9 20-28 5-13 (44)
99 2y1q_A CLPC N-domain, negative 20.6 72 0.0025 18.9 2.5 24 53-76 86-109 (150)
100 1xdx_A Tctex1 light chain prot 20.1 70 0.0024 18.9 2.3 44 13-56 9-57 (114)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.93 E-value=4.4e-26 Score=146.01 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=68.8
Q ss_pred HhhhcCCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 5 AEEQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 5 ~e~e~~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.|.++.+.+..+||++|||||||.||++++||++|++++++|+|+||++|+..|++.|..++||||+|+||..|
T Consensus 30 ~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~A 103 (119)
T 4g92_C 30 LESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAA 103 (119)
T ss_dssp HTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999864
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.92 E-value=1.9e-25 Score=138.55 Aligned_cols=70 Identities=29% Similarity=0.520 Sum_probs=60.6
Q ss_pred cCCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 9 NTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 9 ~~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..+.+.+.||++|||||||.||++++||++|++++++|+|+|+++|++.||+.|+.++||||+|+||..|
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999864
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.91 E-value=7.3e-25 Score=136.25 Aligned_cols=69 Identities=32% Similarity=0.537 Sum_probs=59.8
Q ss_pred CCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 10 TETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 10 ~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.....+.||++||+||||.|+++++||++|++++++|+|+|+++|++.||+.|+..+||||+|+||..|
T Consensus 5 ~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~a 73 (98)
T 1jfi_A 5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 73 (98)
T ss_dssp -----CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred ccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 455678999999999999999999999999999999999999999999999999999999999999875
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.91 E-value=2.5e-25 Score=146.11 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=51.6
Q ss_pred CCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCccCchhhhcC
Q 038850 10 TETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAA-IEKKRKTIKLGDMRVA 78 (78)
Q Consensus 10 ~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a-~~~~rkti~~~Di~~A 78 (78)
.....+.||++|||||||.+|++++||++|++++++|+|+||++|+..||++| ++.+||||+|+||..|
T Consensus 13 ~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~A 82 (140)
T 2byk_A 13 PPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQV 82 (140)
T ss_dssp ----------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999 9999999999999864
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.85 E-value=8.7e-22 Score=127.51 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=59.2
Q ss_pred CCCCCChHHHHHHhh-cCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIK-LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK-~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
....||++||+|||| .+|++.+||+||++++++|+|+||.+|+..|++.|...+||||+++||..|
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~A 72 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQT 72 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 357899999999999 699999999999999999999999999999999999999999999999864
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.84 E-value=3.5e-21 Score=118.13 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=61.8
Q ss_pred CCCCCCChHHHHHHhhcC-cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 12 TTRPEFPVGRVKKIIKLD-EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 12 ~~~~~lP~arVkrImK~d-~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.....||+++|+||||.+ |++.+||+||..++++|+|+||.+|+..|+.+|.+.|||||+++||..|
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~A 71 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFA 71 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 456799999999999998 9999999999999999999999999999999999999999999999764
No 7
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.79 E-value=1.1e-19 Score=108.14 Aligned_cols=65 Identities=34% Similarity=0.425 Sum_probs=59.1
Q ss_pred CCCCCChHHHHHHhh-cCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIK-LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK-~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|...||.++|+|||| .+|++ +||+||..+++.++++|+++|+.+|++.|...+||||+++||..|
T Consensus 1 g~~~LP~A~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A 66 (76)
T 3b0c_W 1 GRRTVPRGTLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAA 66 (76)
T ss_dssp ---CCCHHHHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred CCCcccccHHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 457899999999999 78974 899999999999999999999999999999999999999999764
No 8
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.76 E-value=1.4e-18 Score=100.90 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=58.9
Q ss_pred CCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 16 ~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.||.++|+||||.. +..++|++|..+++.|+|.|+.+|++.|+.+|...||+||+++||..|
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A 63 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 58999999999999 667999999999999999999999999999999999999999999754
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=1.4e-16 Score=108.14 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=60.7
Q ss_pred CCCCCCCCChHHHHHHhhcC-cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 10 TETTRPEFPVGRVKKIIKLD-EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 10 ~~~~~~~lP~arVkrImK~d-~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.......||++.|.||||.. | ..+||+||..+|.+|++.||.+|+..|++.|...+||||+++||..|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~A 77 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 77 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 34456789999999999976 6 56999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.51 E-value=3.7e-14 Score=82.74 Aligned_cols=64 Identities=27% Similarity=0.409 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 14 RPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 14 ~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...||.+.|+||+|.. ++.++|+++...+..+++.|+..+++.|..+|...|||||+.+||..|
T Consensus 4 ~~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 (70)
T ss_dssp -CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred cccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 3579999999999976 678999999999999999999999999999999999999999999753
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.49 E-value=7.1e-14 Score=92.86 Aligned_cols=69 Identities=28% Similarity=0.260 Sum_probs=63.6
Q ss_pred cCCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 9 NTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 9 ~~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..+.....||++.|.||||.. ++.+||.+|...+..++|.|+.++++.|.++|...|||||+.+||..|
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~A 143 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKA 143 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 455667899999999999998 667999999999999999999999999999999999999999999754
No 12
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.47 E-value=1.1e-13 Score=88.92 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=62.3
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||.|+||.+....+|+.+|+++++.++|+|..++.+.|++.|+..++++|+++||..|
T Consensus 20 agL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lA 85 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 85 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 368999999999999988888999999999999999999999999999999999999999999754
No 13
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.47 E-value=8.8e-14 Score=90.27 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=63.0
Q ss_pred CCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 12 TTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 12 ~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++||++||.|+||.+....+|+.+|+++++.++|+|..++.+.|++.|+..++++|+++||..|
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lA 87 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLA 87 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence 3468999999999999988888999999999999999999999999999999999999999999754
No 14
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.46 E-value=1.4e-13 Score=89.15 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=62.3
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||.|+||.+....+|+.+|+++++.++|+|..++.+.|++.|+..++++|+++||..|
T Consensus 22 agLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lA 87 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLA 87 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 368999999999999988888999999999999999999999999999999999999999999754
No 15
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.45 E-value=1.2e-13 Score=88.52 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=62.0
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||.|+||.+....+|+.+|+++++.++|+|..++.+.|.+.|+..++++|+++||..|
T Consensus 19 agLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lA 84 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLA 84 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence 368999999999999987778999999999999999999999999999999999999999999754
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.43 E-value=2.1e-13 Score=90.55 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCChHHHHHHhhcC-cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKLD-EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~d-~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..||.+.|+||||.. |+ .+||.+|...+..+++.|+.+++++|.++|.+.|||||+.+||..|
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a 66 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKAL 66 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 479999999999998 87 7999999999999999999999999999999999999999999643
No 17
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.42 E-value=3.2e-13 Score=87.32 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=61.2
Q ss_pred CCCCCChHHHHHHhhcCcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDI-NKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv-~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||.|+||..... .+|+.+|+++++.++|+|..++.+.|++.|+..++++|+++||..|
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lA 90 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 90 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 36899999999999998765 4999999999999999999999999999999999999999999754
No 18
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.42 E-value=3.7e-13 Score=89.04 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=62.3
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||.|+||.+....+|+.+|+++++.++|+|..++.+.|++.|+..++++|+++||..|
T Consensus 41 agLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lA 106 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLA 106 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 368999999999999988888999999999999999999999999999999999999999999754
No 19
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.31 E-value=3.8e-12 Score=79.25 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..||.+.|+||++.. .+.+||.++...+..++|.|++.++..|..+|+..+|+||+.+||..|
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~A 90 (103)
T 1tzy_D 28 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 90 (103)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 349999999999987 458999999999999999999999999999999999999999999754
No 20
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.31 E-value=3.9e-12 Score=79.25 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=57.9
Q ss_pred CCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..||.+.|+||++.. .+.+||.++...+..++|.|++.++..|..+|+..+|+||+.+||..|
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~A 90 (103)
T 2yfw_B 28 QGITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYA 90 (103)
T ss_dssp --CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 349999999999987 458999999999999999999999999999999999999999999754
No 21
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.27 E-value=8.5e-12 Score=75.15 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=59.0
Q ss_pred CCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..||.+.|+||++.. ++.+||.++...+..+++.|++.++..|..+|+..|||||+.+||..|
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~A 71 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 71 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 459999999999987 568999999999999999999999999999999999999999999754
No 22
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.26 E-value=7.8e-12 Score=85.10 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=61.1
Q ss_pred CCCCCChHHHHHHhhcCcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDI-NKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv-~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++||++||+|+||..... .+|+.+|+++++..+|+|..++.+.|++.|+..|+++|+++||..|
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lA 168 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLA 168 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 46899999999999998665 5899999999999999999999999999999999999999999754
No 23
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.25 E-value=5.8e-12 Score=79.56 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=55.7
Q ss_pred CCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 12 TTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 12 ~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.....||.+-|+||||.. ++.+||.++...+..+++.|++.++..|..+|+..|||||+.+||..|
T Consensus 3 ~~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~la 68 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELL 68 (111)
T ss_dssp -------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 345689999999999988 567999999999999999999999999999999999999999999743
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.24 E-value=1.5e-11 Score=76.63 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..||.+-|+||++.. .+.+||.++...+..++|.|++.++.+|..+|+..+||||+.+||..|
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~A 89 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYA 89 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 459999999999987 578999999999999999999999999999999999999999999754
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.11 E-value=3.7e-10 Score=66.34 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
....||.+-|++|.++- ++.++|.|+...++..+|+-+.+++++|.++++..||+||+.+||..|
T Consensus 3 ~~s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~A 67 (70)
T 1taf_B 3 YGSSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMS 67 (70)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred ccccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 45689999999999998 557999999999999999999999999999999999999999999764
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.77 E-value=1.1e-08 Score=60.90 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=50.4
Q ss_pred CChHHHHHHhhc----C-cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 17 FPVGRVKKIIKL----D-EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 17 lP~arVkrImK~----d-~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+|.....|+++. - ++ -+++.+|..++..|+|.|+..|.+.++.+|...||+||.++||..|
T Consensus 4 i~k~PF~RLVRei~~~~~~~-~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa 69 (77)
T 2hue_B 4 IRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 69 (77)
T ss_dssp SCHHHHHHHHHHHHHTTCSS-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHH
Confidence 455544454443 2 34 5899999999999999999999999999999999999999999753
No 27
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.52 E-value=1.3e-07 Score=58.75 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCCChHHHHHHhhc----C-c--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKL----D-E--DINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~----d-~--dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+-+|.....|+++. - + ..-+++.+|..++..|+|.|+-.|.+.++.+|...||.||..+||..|
T Consensus 26 llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa 96 (100)
T 2yfv_A 26 LLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLA 96 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 34555555555553 1 1 135899999999999999999999999999999999999999999753
No 28
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.52 E-value=2.2e-07 Score=55.91 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=50.4
Q ss_pred CChHHHHHHhhcC-----c-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 17 FPVGRVKKIIKLD-----E-DINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 17 lP~arVkrImK~d-----~-dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+|.....|+++.- + .--+++.+|..++..|+|.|+-.|.+.|+.+|...||+||.++||.-|
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa 71 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLA 71 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHH
Confidence 4555555555531 1 224899999999999999999999999999999999999999998743
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.34 E-value=1.5e-06 Score=50.49 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 21 RVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 21 rVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.|.+|+|.- ++.+++..++..+...++.++..+++.|..+|...||+||+.+||..|
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLA 62 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 578899885 667999999999999999999999999999999999999999999754
No 30
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.31 E-value=1.6e-06 Score=56.47 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=51.8
Q ss_pred CCCChHHHHHHhhc-----CcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 15 PEFPVGRVKKIIKL-----DEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 15 ~~lP~arVkrImK~-----d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+-+|...+.|+++. .++ -+++.+|..++..|+|.|+..|.+.++.+|...||.||..+||..|
T Consensus 61 lLIpk~PF~RLVREI~~~~~~~-~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa 128 (136)
T 1tzy_C 61 LLIRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHH
Confidence 34555555555443 244 5899999999999999999999999999999999999999999753
No 31
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.24 E-value=1.9e-06 Score=56.33 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 33 NKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 33 ~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
-+++.+|+.++..|+|.|+..|.+.|+.+|...||.||..+||..|
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLA 129 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLA 129 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 4899999999999999999999999999999999999999999753
No 32
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=57.42 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCCChHHHHHHhhc-----Cc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 14 RPEFPVGRVKKIIKL-----DE-DINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 14 ~~~lP~arVkrImK~-----d~-dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.+-+|...+.|+++. .+ .--+++.+|+.++..|+|.|+..|.+.|+.+|...||.||..+||..|
T Consensus 75 eLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLA 145 (156)
T 3r45_A 75 HLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLA 145 (156)
T ss_dssp CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 345666666666653 11 124899999999999999999999999999999999999999999753
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.9e-06 Score=55.06 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=44.2
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 30 EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 30 ~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
.++.+||.++...+..+++.|++.++..|..++...+||||+..||.-
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~ 107 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 107 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 467799999999999999999999999999999999999999999864
No 34
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=98.13 E-value=2.4e-06 Score=51.94 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCchhhhcC
Q 038850 13 TRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEK-KRKTIKLGDMRVA 78 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~-~rkti~~~Di~~A 78 (78)
....||-+.|||+|+.--+ ..++.+...+++-.+-+|+.+|++.|.+...+. .+.-|++.||..|
T Consensus 13 Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA 78 (89)
T 1bh9_B 13 RRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREA 78 (89)
T ss_dssp HHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 3568999999999996544 369999999999999999999999999999865 4669999999765
No 35
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.09 E-value=3.4e-06 Score=52.90 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=48.2
Q ss_pred HHHHhhcCcC--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 22 VKKIIKLDED--INKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 22 VkrImK~d~d--v~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
|.||.+.-.. -.++|.+++..++..++-|+..++..+..+|+..|||||+.+||.-
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~L 82 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKL 82 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHH
Confidence 6667664211 1379999999999999999999999999999999999999999974
No 36
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=9.6e-06 Score=49.41 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=42.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 33 NKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 33 ~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
..+|.++...++..++.++..++..+..+|+..|||||+.+||..
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L 75 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLML 75 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 469999999999999999999999999999999999999999964
No 37
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.07 E-value=4e-06 Score=53.08 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHHHhhcC---cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 22 VKKIIKLD---EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 22 VkrImK~d---~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
|-||++.- .++ .+|.++..+++..++-|+..+++.+..+|+..|||||+.+||..
T Consensus 33 V~rIvke~gaer~~-~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~L 90 (113)
T 4dra_A 33 VGCLCEEVALDKEM-QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 90 (113)
T ss_dssp HHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHH
Confidence 55677642 233 59999999999999999999999999999999999999999964
No 38
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.97 E-value=1.2e-05 Score=65.09 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCCCCCCCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 10 TETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 10 ~~~~~~~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
.....++||++||.|.+|..- ..+|+..|++.++..+|+...++.+-|++.++..+++.|+++||..
T Consensus 98 ~~~~~l~~pv~~~~~~l~~~~-~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ 164 (1049)
T 3ksy_A 98 KRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKV 164 (1049)
T ss_dssp CCSSSCSSCHHHHHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHH
T ss_pred cccCCccccHHHHHHHhhccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccc
Confidence 344578999999999996543 3599999999999999999999999999999999999999999864
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=4.9e-06 Score=58.30 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=45.5
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 30 EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 30 ~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
.++.+||.++...+..+++.|++.++..|..++...+||||+..||.-
T Consensus 174 gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ 221 (235)
T 2l5a_A 174 GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 221 (235)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 377899999999999999999999999999999999999999999864
No 40
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.90 E-value=8.4e-05 Score=44.73 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCCCCChHHHHHHhhcC--cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 12 TTRPEFPVGRVKKIIKLD--EDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 12 ~~~~~lP~arVkrImK~d--~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
.....||..-|.||++.. .+-.+|+.+|..++++=+++|+.+-...|...|...+...|..+||.+
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 346789999999999963 345699999999999999999999999999999988999999999864
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.89 E-value=7.4e-05 Score=44.64 Aligned_cols=65 Identities=17% Similarity=0.359 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHhhc--CcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 13 TRPEFPVGRVKKIIKL--DEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 13 ~~~~lP~arVkrImK~--d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
....||..-|.||++. ..+-.+|+++|..++++=+++|+.+-...|...|...+...|..+||.+
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 3678999999999996 3345699999999999999999999999999999999999999999864
No 42
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.86 E-value=3.2e-05 Score=49.51 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=52.4
Q ss_pred HHHHHHhh-cCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 20 GRVKKIIK-LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 20 arVkrImK-~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.-|.|++| .+||. .||..|...+..-...+.+.++.+|...+..++|+||+.+||..|
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtA 95 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTA 95 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHH
Confidence 45888888 58886 599999999999999999999999999999999999999999764
No 43
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.85 E-value=1.5e-05 Score=52.04 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHhhc---CcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 22 VKKIIKL---DEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 22 VkrImK~---d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
|-+|.+. +.+ ..+|.++...++..++-|+..++..+..+|+..||+||+.+||..
T Consensus 25 VgkIvee~~~~~~-~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkL 82 (140)
T 3vh5_A 25 TGALAQDVAEDKG-VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKL 82 (140)
T ss_dssp HHHHHHHHHHHHT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 4455553 223 369999999999999999999999999999999999999999964
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.84 E-value=3.7e-05 Score=49.41 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=52.1
Q ss_pred HHHHHhh-cCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 21 RVKKIIK-LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 21 rVkrImK-~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
-|.|++| .+||. .||..|...+..-...+.+.++.+|...+..++|+||+.+||..|
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtA 98 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTA 98 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 5888888 58996 599999999999999999999999999999999999999999764
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=4.1e-05 Score=53.61 Aligned_cols=65 Identities=28% Similarity=0.299 Sum_probs=54.7
Q ss_pred CCCCChHH-HHHHhhcCc---CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 14 RPEFPVGR-VKKIIKLDE---DINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 14 ~~~lP~ar-VkrImK~d~---dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
-..+|..| ||.|.+.-. +--+.+++|+.++..|+|.|+-.|-+.++.+|...+|-||.++||..|
T Consensus 12 I~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLa 80 (235)
T 2l5a_A 12 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLA 80 (235)
T ss_dssp CSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHH
T ss_pred ccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHH
Confidence 35788888 566766422 235899999999999999999999999999999999999999998743
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.59 E-value=0.00016 Score=48.93 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=52.4
Q ss_pred HHHHHHhh-cCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 20 GRVKKIIK-LDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 20 arVkrImK-~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..|.|++| .+||. .+|.+|...+..-+..+.+.|+.+|...+...+|+||+.+||..|
T Consensus 7 ~yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~A 65 (192)
T 2jss_A 7 SYIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTA 65 (192)
T ss_dssp HHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHH
T ss_pred HHHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45888998 58886 599999999999999999999999999999999999999999754
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.91 E-value=0.0043 Score=36.49 Aligned_cols=61 Identities=10% Similarity=0.261 Sum_probs=55.2
Q ss_pred CCCChHHHHHHhhc-CcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhhh
Q 038850 15 PEFPVGRVKKIIKL-DEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 15 ~~lP~arVkrImK~-d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
--|+-.++..+++. ||. ..+..++-.++..-+..||...+..|...|+..|..||..+||.
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvq 65 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 65 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 35788899999985 776 47999999999999999999999999999999999999999985
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.037 Score=33.40 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=46.2
Q ss_pred CChHHHHHHhhc--CcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCccCchhhh
Q 038850 17 FPVGRVKKIIKL--DEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEK-------KRKTIKLGDMR 76 (78)
Q Consensus 17 lP~arVkrImK~--d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~-------~rkti~~~Di~ 76 (78)
+|..-|-||++. ..+-.+|+++|..++++=.+.|+.+-...|++..... +...|+-.|+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 688899999995 3344589999999999999999999999998876652 22567777664
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.054 Score=34.31 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=44.6
Q ss_pred CCCChHHH-HHHhhc-Cc--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCccCc
Q 038850 15 PEFPVGRV-KKIIKL-DE--DINKVTSEALFIVSRSTELFLRFLAEKSAEAAIE---KKRKTIKL 72 (78)
Q Consensus 15 ~~lP~arV-krImK~-d~--dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~---~~rkti~~ 72 (78)
..+|..|+ |.|.+. .+ ..-+.+++|..++..|+|.|+-.|-+.++.+|.. +|-+.|+.
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~ 67 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG 67 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH
Confidence 46888885 557653 22 2348999999999999999999999999998875 45566653
No 50
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=89.42 E-value=1.2 Score=29.09 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhh
Q 038850 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75 (78)
Q Consensus 16 ~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di 75 (78)
-.|.+++.|+++.-.+.. |-++-..-++.-.+-=+.+|..-|...|+.+||..|.+.|+
T Consensus 2 vm~~~~~e~lFR~aa~Ld-vdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLD-VDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCC-CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 368899999999766654 33444444555566667889999999999999999999997
No 51
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=86.59 E-value=1.5 Score=25.52 Aligned_cols=43 Identities=30% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038850 20 GRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAI 63 (78)
Q Consensus 20 arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~ 63 (78)
.||..||+. .++..+++|+..+++.|+|.=+..|.+.-...|+
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467778876 5888999999999999999998888887665554
No 52
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=83.18 E-value=1.7 Score=28.92 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCchhh
Q 038850 16 EFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDM 75 (78)
Q Consensus 16 ~lP~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~~a~~~~rkti~~~Di 75 (78)
-.|.+++.|+++.-.+.. |-++-..-+..-.+-=+-+|..-|...|+.+||..|.+.||
T Consensus 26 vmg~~kferlFR~aagLD-vdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDID-LTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 679999999999866653 44555556666667778889999999999999999999997
No 53
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=81.15 E-value=0.96 Score=25.16 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 40 LFIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 40 ~~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++..++-| |..|+.+|...|...++..|+.+|+..|
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~A 69 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 69 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 44556666655 7789999999999999999999998764
No 54
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=75.09 E-value=1.8 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|-..++..|+.+|+..|
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~A 64 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEA 64 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 4557777777888888889999998653
No 55
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=73.20 E-value=2.2 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|.+..+..|+.+|+..|
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~A 77 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMA 77 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4568888888888888999999998754
No 56
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=73.05 E-value=2 Score=24.59 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 41 FIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 41 ~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..++..|+-| |..|+.+|...|.+.++..|+.+|+..|
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~A 67 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKA 67 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 4455555555 6778888888888888999999998754
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.07 E-value=13 Score=25.34 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=42.9
Q ss_pred ChHHHHHHhhc--CcCccccchHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 18 PVGRVKKIIKL--DEDINKVTSEALFIVSRSTE----LFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 18 P~arVkrImK~--d~dv~~vs~eA~~~i~~A~E----lFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+..-++.|++. ...-..++.++...+...+. -.+..+...|...|...++..|+.+||..|
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a 326 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRV 326 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 44455566552 11113588888888887775 356678888888888889999999998753
No 58
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=70.62 E-value=1.9 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|...++..|+.+|+..|
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~A 67 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKA 67 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 5568888888888888899999998654
No 59
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=70.50 E-value=9.3 Score=19.76 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=35.9
Q ss_pred HHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 038850 21 RVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAE 60 (78)
Q Consensus 21 rVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~~A~~ 60 (78)
-|+.+|=.-.|...-..|.+.++-...--||..++.+|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788888888888999999999999999999999998865
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.24 E-value=13 Score=27.94 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 32 INKVTSEALFIVSRST-------------ELFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 32 v~~vs~eA~~~i~~A~-------------ElFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++.+|...+...+ .--+..|...|...|...++..|+.+||..|
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A 371 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEA 371 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 3468888887776643 3456678888989999999999999998764
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.80 E-value=22 Score=23.82 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 34 KVTSEALFIVSRSTE-------LFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 34 ~vs~eA~~~i~~A~E-------lFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
.++.++...+...+. --+..+...|...|...++.+|+.+||..|
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a 318 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRV 318 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 688888888766543 235567778888888889999999998753
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=62.69 E-value=15 Score=24.72 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=43.4
Q ss_pred hHHHHHHhhcC----cCccccchHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 19 VGRVKKIIKLD----EDINKVTSEALFIVSRSTE------LFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 19 ~arVkrImK~d----~dv~~vs~eA~~~i~~A~E------lFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..-+..|++.- -.-..++.++...+...+. ..+..++..++..+...++.+|+.+|+..|
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a 272 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSA 272 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 45556666531 0113578888888888776 567788899999998888999999998653
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.03 E-value=9 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 50 FLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 50 Fi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
-+..|+..|...|...++..|+.+|+..|
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~a 254 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKA 254 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHH
Confidence 36678889999998899999999998754
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.33 E-value=51 Score=21.94 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=41.0
Q ss_pred hHHHHHHhhcC----cCccccchHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 19 VGRVKKIIKLD----EDINKVTSEALFIVSRSTE------LFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 19 ~arVkrImK~d----~dv~~vs~eA~~~i~~A~E------lFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
..-+..|++.. -....++.++...+...+. ..+..++..++..+...++..|+.+|+..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~ 267 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYM 267 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHH
Confidence 44566666531 1113578888888877665 34556888888888888889999999864
No 65
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.69 E-value=11 Score=24.45 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 40 LFIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 40 ~~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++..++=| +..++..|...|...++..|+.+|+..|
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 44455544433 4567778888888888889999998764
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.32 E-value=12 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+..++..|...|...++..|+.+|+..|
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 5567888888888889999999998754
No 67
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.98 E-value=32 Score=24.72 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=41.8
Q ss_pred ChHHHHHHhhcC--cCccccchHHHHHHHHHH-H---HHHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 18 PVGRVKKIIKLD--EDINKVTSEALFIVSRST-E---LFLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 18 P~arVkrImK~d--~dv~~vs~eA~~~i~~A~-E---lFi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+..-+..|++.. .....++.++..+++..+ . -....|...|...|...++..|+.+||..|
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 445566666531 111247888887777655 2 245567888888888899999999999753
No 68
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.17 E-value=12 Score=27.90 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|.+.++..|+.+|+..|
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~A 419 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 6778999999999999999999998764
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=45.49 E-value=14 Score=24.51 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 40 LFIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 40 ~~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++..++=| +..++..|...|...++..|+.+|+..|
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a 276 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 34444444332 4567778888888888889999998764
No 70
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.79 E-value=14 Score=27.24 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|.+.++..|+.+|+..|
T Consensus 358 i~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 358 VKGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 6778999999998899999999998754
No 71
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.37 E-value=14 Score=27.12 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 40 LFIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 40 ~~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
...++..++-| |..|+.+|...|.+.++..|+.+|+..|
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 34455555443 6789999999999999999999998764
No 72
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.14 E-value=15 Score=27.20 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|.+.++..|+.+|+..|
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKA 418 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 6678899999998899999999998754
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.53 E-value=13 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
|..|+.+|...|.+.++..|+.+|+..|
T Consensus 391 i~~l~~eA~~~a~r~~~~~i~~~Df~~A 418 (434)
T 4b4t_M 391 LKAVTVEAGMIALRNGQSSVKHEDFVEG 418 (434)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 6778899999998889999999998654
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.74 E-value=55 Score=21.98 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHH------------HHHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 34 KVTSEALFIVSRST------------ELFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 34 ~vs~eA~~~i~~A~------------ElFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
.++.++...+...+ =.++..++..++..+...++..|+.+|+..
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 57888888887777 245678888899888888889999998864
No 75
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.51 E-value=17 Score=27.39 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=28.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 41 FIVSRSTELF----LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 41 ~~i~~A~ElF----i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
..+++.|+-| |..|+.+|...|.+.+++.|+.+|+..|
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~A 446 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKA 446 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 3445554433 6778999999998889999999998754
No 76
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=35.11 E-value=21 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++..|+++|++.+||.|+.-
T Consensus 199 ~eRiar~AFe~A~~r~rkkVt~v 221 (409)
T 2e0c_A 199 TQRITRLAIQYAIEHKRKKVTIM 221 (409)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEE
Confidence 67899999999999888876643
No 77
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=34.26 E-value=22 Score=26.24 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++..|+++|++.+|+.|+.-
T Consensus 199 ~eRiar~AFe~A~~r~rkkVt~v 221 (412)
T 2iv0_A 199 TKRLVRMAIRYAIENNRKSVTLV 221 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEE
Confidence 67899999999999888876643
No 78
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=34.15 E-value=22 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++.-|+++|++.+||.|+.-
T Consensus 146 ~eRiar~AF~~A~~r~rkkvt~v 168 (333)
T 1x0l_A 146 SERIGRAALRIAEGRPRKTLHIA 168 (333)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE
Confidence 66888999999998878766543
No 79
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=33.86 E-value=23 Score=25.81 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCc
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKL 72 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~ 72 (78)
++.++.-|+++|++.+||.|+.
T Consensus 168 ~eRIar~AFe~A~~r~~kkVt~ 189 (364)
T 3flk_A 168 VDRILKYAFDLAEKRERKHVTS 189 (364)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEE
Confidence 6788899999999988876654
No 80
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=32.78 E-value=24 Score=26.17 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCc
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKL 72 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~ 72 (78)
++.++..|+++|++.+||.|+.
T Consensus 216 ~eRIar~AFe~A~~r~rkkVT~ 237 (427)
T 3dms_A 216 TERLVRKAIQYAIDNDRKSVTL 237 (427)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEE
Confidence 6789999999999888887664
No 81
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=32.16 E-value=26 Score=25.42 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCc
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKL 72 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~ 72 (78)
++.++.-|+++|++.+||.|+.
T Consensus 165 ~eRiar~AFe~A~~r~rkkVt~ 186 (354)
T 3blx_B 165 SERVIRYAFEYARAIGRPRVIV 186 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEE
Confidence 5688899999999988886654
No 82
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=32.13 E-value=26 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCCCccCc
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKL 72 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~ 72 (78)
++.++..|+++|++.+|+.|+.
T Consensus 159 ~eRiar~AF~~A~~r~rkkVt~ 180 (349)
T 3blx_A 159 TERIARFAFDFAKKYNRKSVTA 180 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEE
Confidence 5688899999999887876654
No 83
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=31.95 E-value=11 Score=24.31 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 50 FLRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 50 Fi~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
-+..|+..|...|...++..|+.+|+..|
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a 245 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYA 245 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 35667778888888788899999998754
No 84
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=31.12 E-value=27 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++..|+++|++.+||.|+.-
T Consensus 206 ~eRIar~AFe~A~~r~rkkVT~v 228 (429)
T 2d4v_A 206 SERLIRRTIQYALEHGKPSVSLV 228 (429)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE
Confidence 57899999999999888876643
No 85
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=30.17 E-value=86 Score=19.38 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=22.4
Q ss_pred ChHHHHHHhhcCcCccccchHHHHHHHHHHHHHHHHHHH
Q 038850 18 PVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAE 56 (78)
Q Consensus 18 P~arVkrImK~d~dv~~vs~eA~~~i~~A~ElFi~~L~~ 56 (78)
-++|+..+|+..-+...-=.--..-.++|+++|+..-++
T Consensus 21 eiar~~gl~~nqn~LicgLRqLANeTtqaLqLfLRaTTE 59 (131)
T 1ebo_A 21 EIARIKKLIGEADGLIEGLRQLANETTQALQLFLRATTE 59 (131)
T ss_dssp HHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999975332210111223346788888876443
No 86
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=29.68 E-value=38 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 52 RFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 52 ~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
..+...|+..|+..|...|..+||.-
T Consensus 87 ~~vl~~A~~~A~~~~~~~v~~eHlLl 112 (145)
T 3fes_A 87 KQILELSGMFANKLKTNYIGTEHILL 112 (145)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 34556677778888888888888753
No 87
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=28.70 E-value=26 Score=25.99 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++..|+++|++.+|+.|+.-
T Consensus 197 ~eRiar~AFe~A~~r~rkkVt~v 219 (423)
T 1hqs_A 197 TSRLVRAAIDYAIEHGRKSVTLV 219 (423)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Confidence 67899999999998888877643
No 88
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.31 E-value=27 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhhcC
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMRVA 78 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~~A 78 (78)
+..++..|...|...+++.|+.+|+..|
T Consensus 222 l~~l~~~a~~~a~~~~~~~i~~~~~~~a 249 (268)
T 2r62_A 222 LANIINEAALLAGRNNQKEVRQQHLKEA 249 (268)
T ss_dssp HHHHHHHHHHTTSSSCCCSCCHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 5567777777777778889999998764
No 89
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=27.27 E-value=28 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCch
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLG 73 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~ 73 (78)
++.++..|+++|++.+|+.|+.-
T Consensus 209 ~eRIar~AFe~A~~r~rkkVT~v 231 (435)
T 1tyo_A 209 TRRLMERALEWALRNGNTVVTIM 231 (435)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEE
Confidence 67889999999998878776643
No 90
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=26.20 E-value=48 Score=19.93 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCCccCchhhh
Q 038850 53 FLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 53 ~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
.+...|+..|+..+...|..+||.
T Consensus 88 ~vL~~A~~~a~~~~~~~i~~eHlL 111 (146)
T 3fh2_A 88 KVLELSLREGLQMGHKYIGTEFLL 111 (146)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCcHHHHH
Confidence 455566677777788888888774
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=25.32 E-value=91 Score=21.10 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=41.1
Q ss_pred CChHHHHHHhhc-----CcCccccchHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCCccCchhhh
Q 038850 17 FPVGRVKKIIKL-----DEDINKVTSEALFIVSRSTE---------LFLRFLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 17 lP~arVkrImK~-----d~dv~~vs~eA~~~i~~A~E---------lFi~~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
|+..-+..|++. ..+ ..++.++...+...+. .++..++..+...+...++..++.+|+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 344556666642 111 2477788888877777 4788888888888888888888887765
No 92
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=23.49 E-value=44 Score=25.44 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCCCccCc
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKL 72 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~ 72 (78)
++.++.-|+++|++.+|+.|+.
T Consensus 167 ieRIar~AFe~A~~r~rkkVT~ 188 (496)
T 2d1c_A 167 SEKIVRFAFELARAEGRKKVHC 188 (496)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEE
Confidence 6788899999999887776654
No 93
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=23.40 E-value=30 Score=17.60 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=8.3
Q ss_pred HHHHHHhhcC
Q 038850 20 GRVKKIIKLD 29 (78)
Q Consensus 20 arVkrImK~d 29 (78)
.|||+|+|+.
T Consensus 5 ErVk~ilks~ 14 (40)
T 1f8v_D 5 EGVLRVLNQI 14 (40)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4899999974
No 94
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=23.23 E-value=53 Score=19.35 Aligned_cols=25 Identities=4% Similarity=0.049 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCCccCchhhh
Q 038850 52 RFLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 52 ~~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
..+...|+..|+..|...|...||.
T Consensus 85 ~~~l~~A~~~A~~~~~~~i~~ehLL 109 (143)
T 1k6k_A 85 QRVLQRAVFHVQSSGRNEVTGANVL 109 (143)
T ss_dssp HHHHHHHHHHHHSSSCSCBCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHH
Confidence 3456677777777777788877764
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.23 E-value=1.8e+02 Score=19.39 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=36.2
Q ss_pred hHHHHHHhhcC----cCccccchHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCchhhhc
Q 038850 19 VGRVKKIIKLD----EDINKVTSEALFIVSRSTE------LFLRFLAEKSAEAAIEKKRKTIKLGDMRV 77 (78)
Q Consensus 19 ~arVkrImK~d----~dv~~vs~eA~~~i~~A~E------lFi~~L~~~A~~~a~~~~rkti~~~Di~~ 77 (78)
..-+..|++.- -.-..++.++...+...+. ..+..+...++..|. +...|+.+||..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~ 265 (384)
T 2qby_B 199 AEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDK 265 (384)
T ss_dssp HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHH
Confidence 34555555531 1113578888877777665 234567777777766 667899888864
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=21.98 E-value=59 Score=20.61 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH-hCCCCccCchhhhc
Q 038850 52 RFLAEKSAEAAI-EKKRKTIKLGDMRV 77 (78)
Q Consensus 52 ~~L~~~A~~~a~-~~~rkti~~~Di~~ 77 (78)
..+.+.|+..|+ +-|...|..+||.-
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLL 130 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFL 130 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHH
Confidence 456677888888 88999998888753
No 97
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=21.47 E-value=54 Score=19.38 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCCCccCchhhh
Q 038850 51 LRFLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 51 i~~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
+..+...|+..|...+...|..+||.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlL 112 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFV 112 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHH
Confidence 34556677777777777788877764
No 98
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=21.46 E-value=34 Score=17.71 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=7.8
Q ss_pred HHHHHHhhc
Q 038850 20 GRVKKIIKL 28 (78)
Q Consensus 20 arVkrImK~ 28 (78)
.|||+|+|+
T Consensus 5 ErVk~ilks 13 (44)
T 1nov_D 5 ERVRSILKS 13 (44)
T ss_pred HHHHHHHHH
Confidence 489999997
No 99
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=20.56 E-value=72 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCccCchhhh
Q 038850 53 FLAEKSAEAAIEKKRKTIKLGDMR 76 (78)
Q Consensus 53 ~L~~~A~~~a~~~~rkti~~~Di~ 76 (78)
.+...|+..|...+...|..+||.
T Consensus 86 ~vL~~A~~~A~~~~~~~i~~ehlL 109 (150)
T 2y1q_A 86 KVIELSMDEARKLGHSYVGTEHIL 109 (150)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHcCCCeecHHHHH
Confidence 455667777777777777777764
No 100
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=20.08 E-value=70 Score=18.89 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCCCCChHHHHHHhhcC-----cCccccchHHHHHHHHHHHHHHHHHHH
Q 038850 13 TRPEFPVGRVKKIIKLD-----EDINKVTSEALFIVSRSTELFLRFLAE 56 (78)
Q Consensus 13 ~~~~lP~arVkrImK~d-----~dv~~vs~eA~~~i~~A~ElFi~~L~~ 56 (78)
-...||..+|+.|++.- .+..=-...+.......++.-...|.+
T Consensus 9 ~~~~f~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~ 57 (114)
T 1xdx_A 9 EEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTA 57 (114)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999962 111111234444555555555555543
Done!