BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038852
(851 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
++ NL N Y +G DE + +++ +E P S+ + +L + G EA++ +
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 237 MLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN--- 293
L + Y NL + + G+ ++A E + Q+ L D E W+N
Sbjct: 61 ALELDPRSAEAWY-NLGNAYYKQGDYDEAIEYY----QKALELD----PRSAEAWYNLGN 111
Query: 294 ----QGKDKEAMQSYKSLMERNFR 313
QG EA++ Y+ +E + R
Sbjct: 112 AYYKQGDYDEAIEYYQKALELDPR 135
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 23/200 (11%)
Query: 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV 248
G+++E + + IET P + + +L F G I A+ ++
Sbjct: 149 GRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------- 199
Query: 249 YNNLISGFLNLGNLEKANELFDE-----LKQRCLVYD-GVVNATFMEWWFNQGKDKEAMQ 302
N + ++NLGN+ K +FD L+ L + VV+ ++ QG A+
Sbjct: 200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 303 SYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFEQMLDNHQPPNIQAVNSDTFNIM 362
+Y+ +E A CN A+ + L + ++D+ N +
Sbjct: 259 TYRRAIELQPHFPDAYCNL-ANALKEKGSVAEAEDCYNTAL------RLCPTHADSLNNL 311
Query: 363 VNECFKHGKFSEAIETFKKA 382
N + G EA+ ++KA
Sbjct: 312 ANIKREQGNIEEAVRLYRKA 331
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
+Y+NL N Y + G++ E + +R + P + Y +L V AG + AV
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAV----- 121
Query: 237 MLSRQLGADSLVYN-NLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295
Q +L YN +L +LGNL KA +E K C + F W N G
Sbjct: 122 ----QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA-CYLKAIETQPNFAVAWSNLG 176
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 148 AMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
A Y+ YD+A+ +Y+ ++ PN ++ NL N Y +G DE + +++ +E P
Sbjct: 18 AYYKQGDYDEAI---EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264
++ + +L + G EA++ + L +Y N NLGN ++
Sbjct: 75 --NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--------LYPNNAEAKQNLGNAKQ 122
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPP 572
+V+ + + +TPA+ D + E G EE+ R+ A+RWG A P P P
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEV-RLEEAERWGLAEPRPIP 490
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPP 572
+V+ + + +TPA+ D + E G EE+ R+ A+RWG A P P P
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEV-RLEEAERWGLAEPRPIP 490
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPP 572
+V+ + + +TPA+ D + E G EE+ R+ A+RWG A P P P
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEV-RLEEAERWGLAEPRPIP 490
>pdb|2W4B|A Chain A, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
pdb|2W4B|B Chain B, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
Length = 470
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 162 FKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG--PSSNTYRHLTK 219
FKY F +++ P SY L C + ++ R +E P G PS Y LT+
Sbjct: 230 FKYLFSKSEFDPIYPSYTALYKRPCKRSFIRFINSIARPTVEYVPDGRLPSEGDY-LLTQ 288
Query: 220 G------FVDAGRIGEAVDLLRDMLSRQLGADSLVY 249
V ++G DL+ D L+ G +S++Y
Sbjct: 289 DEAWNLKDVRKRKLGPGHDLVADSLAANRGVESMLY 324
>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
Length = 470
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 162 FKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG--PSSNTYRHLTK 219
FKY F +++ P SY L C + ++ R +E P G PS Y LT+
Sbjct: 230 FKYLFSKSEFDPIYPSYTALYKRPCKRSFIRFINSIARPTVEYVPDGRLPSEGDY-LLTQ 288
Query: 220 G------FVDAGRIGEAVDLLRDMLSRQLGADSLVY 249
V ++G DL+ D L+ G +S++Y
Sbjct: 289 DEAWNLKDVRKRKLGPGHDLVADSLAANRGVESMLY 324
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 148 AMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
A Y+ YD+A+ +Y+ ++ PN ++ NL N Y +G DE + +++ +E P
Sbjct: 18 AYYKQGDYDEAI---EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDML 238
++ + +L + G EA++ + L
Sbjct: 75 --NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|3QKY|A Chain A, Crystal Structure Of Rhodothermus Marinus Bamd
Length = 261
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR--YCENEMLEEAEKLLREIS 422
E + GK+ AIE FK T+ ++ +A D Y +AR Y E L A + R I
Sbjct: 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFY---LARAYYQNKEYLLAASEYERFIQ 80
Query: 423 TKSLSPDV 430
+ P V
Sbjct: 81 IYQIDPRV 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,083,834
Number of Sequences: 62578
Number of extensions: 822626
Number of successful extensions: 1819
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 41
length of query: 851
length of database: 14,973,337
effective HSP length: 107
effective length of query: 744
effective length of database: 8,277,491
effective search space: 6158453304
effective search space used: 6158453304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)